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G."],"authorGivenName":["I.","C.","D.M.","G."],"authorOrcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0002-6785-4049"],"authorRor":["https://ror.org/03kk7td41","https://ror.org/041kmwe10"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"These data are cellulolytic decomposition in eight Welsh upland rivers with contrasting land-use, moorland and exotic conifer, in response to riparian deciduous leaf addition. Eight sampling reaches were chosen at two sites, Llyn Brianne (4 reaches) and Plynlimon (4 reaches). The experiment consisted of adding deciduous leaves to half of the reaches whilst the other half were maintained as a control (no addition of deciduous leaves). To characterise the cellulolytic decomposition of the studied streams, cotton strips were placed and then collected during January 2013 (before deciduous leaf addition) and March 2013 (after deciduous leaf addition) in each sampling reach. \n\nThe main goal of this survey was to examine how aquatic biodiversity and litter decomposition respond to leaf addition in moorland and conifer forested rivers. Dr Isabelle Durance was responsible for organising the surveys, Dr Dan Perkins was in charge of collecting, processing and sorting the samples. The work was carried out under Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) project (Grant reference NERC NE/J014818/1). DURESS was a project funded by the Natural Environment Research Council (NERC) Biodiversity and Ecosystem Service Sustainability (BESS) programme. \n","documentType":"GEMINI_DOCUMENT","familyName":["Durance","Gutierrez-Canovas","Perkins","Woodward"],"fullName":["Durance, I.","Gutierrez-Canovas, C.","Perkins, D.M.","Woodward, G."],"funder":["Natural Environment Research Council"],"givenName":["Isabelle","I.","C.","D.M.","G."],"grant":["NE/J014818/1"],"identifier":"53b4ec90-cb8a-49c6-a6f9-18a77f980b0f","incomingCitationCount":0,"keyword":["Wales","Plynlimon","Llyn Brianne","decomposition","cellulolytic decomposition","land use","ecosystem services"],"keywordsOther":["decomposition","cellulolytic decomposition","land use","ecosystem services"],"keywordsPlace":["Wales","Plynlimon","Llyn Brianne"],"licence":"Open government licence","lineage":"Each stream was divided into an upstream control zone and a downstream experimental zone. Samples of algal biofilm were collected from tiles previously placed on each sampling site. Deciduous leaves were added directly to the stream and by fixing 'Onion bags' of leaves the stream bed and bank. Samples were collected two occasions, January (3-16/01/2013), and March (11-14/03/2013) in all the streams in both the upstream reference zones and downstream experimental zones. Six experimental units (cotton strips) were placed randomly in each reach of the experimental sites before and after the manipulation. At the end of the 'before' (T1) and after (T2) experimental periods, strips were recovered from the streams and frozen immediately at ~20 degrees Celsius. Back at the laboratory calico strips were rinsed thoroughly in tap water and oven dried to constant mass at 65 degrees Celsius and the tensile strength was measured using a Hounsfield machine (Maywood Instruments Ltd., Basingstoke, UK) with a 25 kN load cell and 40 mm test gap (after Jenkins et al. 2013). One estimate of breaking strain was obtained per strip. Three untreated strips (which were also rinsed thoroughly in tap water after being taken to the field and returned, then oven dried to constant mass before tensile strength testing) were used as controls for any loss of strength from transport and washing in tap water.","locations":["POLYGON((-3.785 52.107, -3.785 52.518, -3.641 52.518, -3.641 52.107, -3.785 52.107))"],"metadataDate":"2026-06-29T16:08:27.000Z","orcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0002-6785-4049"],"organisation":["Cardiff University","Imperial College London","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2017-03-29T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/53b4ec90-cb8a-49c6-a6f9-18a77f980b0f","10.5285/53b4ec90-cb8a-49c6-a6f9-18a77f980b0f","doi:10.5285/53b4ec90-cb8a-49c6-a6f9-18a77f980b0f"],"resourceType":"Dataset","rightsHolder":["Cardiff University"],"ror":["https://ror.org/03kk7td41","https://ror.org/041kmwe10","https://ror.org/04xw4m193"],"shortenedDescription":"These data are cellulolytic decomposition in eight Welsh upland rivers with contrasting land-use, moorland and exotic conifer, in response to riparian deciduous leaf addition. Eight sampling reaches were chosen at two sites, Llyn Brianne (4 reaches) and Plynlimon (4…","state":"published","supplementalDescription":["Hladyz, S., Åbjörnsson, K., Giller, P. S., & Woodward, G. (2011). Impacts of an aggressive riparian invader on community structure and ecosystem functioning in stream food webs. Journal of Applied Ecology, 48(2), 443-452","Jenkins, G.B., Woodward, G. and Hildrew, A.G., 2013. Long-term amelioration of acidity accelerates decomposition in headwater streams. Global change biology, 19(4), pp.1100-1106.","Layer, K., Riede, J.O., Hildrew, A.G. and Woodward, G., 2010. Food web structure and stability in 20 streams across a wide pH gradient. Advances In Ecological Research, 42, pp.265-299."],"title":"Cellulolytic decomposition in Welsh upland rivers in response to organic matter addition (2013)","version":1.0,"view":["public","danor"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute"],"authorFamilyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"authorFullName":["Barwell, L.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"authorGivenName":["L.","K.","G.","F.","D.E.L","R.","B.V"],"authorOrcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127"],"availability":"Available","catalogue":"eidc","dataFormat":["TIFF","GeoPackage"],"description":"This dataset scores the relative risks of Phytophthora x alni infection for 50034 fragments in Scotland identified as containing any of the three alder species susceptible to the pathogen (common alder, Italian alder and grey alder). Fragment risk scores integrate climate suitability (using pathogen-specific temperature-dependent growth curves and a relative humidity threshold), proximity to rivers/flooding, connectivity to other alder fragments via flood events and recent planting of alder under forestry grant schemes. Data and models used to score risk factors are variable in their time frames, but are broadly representative of the period from 2013 to 2023. Phytophthora disease of alder has been widespread in southern England since at least 1995 and became more prevalent in annual surveys between 1994 and 2003. It has been confirmed at several riparian sites in Scotland. P. x alni diseases are reported only from the alder genus.","documentType":"GEMINI_DOCUMENT","familyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"fullName":["Louise Barwell","Barwell, L.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"funder":["Natural Environment Research Council","Scotland's Plant Health Centre","Department for Environment Food and Rural Affairs"],"givenName":["L.","K.","G.","F.","D.E.L","R.","B.V"],"grant":["NE/V019813/1","PHC2023/02","TH12224FR10"],"identifier":"824f9ba8-7d1c-4a82-b5ec-a4f850f1d370","incomingCitationCount":0,"keyword":["Environmental risk","Environmental survey","biodiversity","exotic species","forest","forestry","habitat","pathogenic organism","pest","phytopathology","risk assessment","Scotland"],"keywordsOther":["biodiversity","exotic species","forest","forestry","habitat","pathogenic organism","pest","phytopathology","risk assessment","Scotland"],"keywordsTheme":["Environmental risk","Environmental survey"],"licence":"Open government licence","lineage":"We employed an iterative and collaborative co-production process that brought together stakeholders with diverse expertise from across Scotland's plant health sector representing forestry, conservation, horticulture, and government agencies through a semi-structured process of survey and workshops. Fragments containing alder species were extracted from the National Forest Estate Sub-compartments 2019, Native Woodland Survey of Scotland and global database of host-Phytophthora detections, removing any felled areas since 2013 using the National Forest Inventory. Key risk factors (climate suitability, proximity to rivers/flooding, connectivity to other alder fragments via flood events and recent planting of alder) and their scoring were agreed with 15 cross-sectoral stakeholders through a self-completion survey and two workshops. The final report was peer reviewed by the Plant Health Centre. In addition, a knowledge integration and validation workshop (November 13, 2024) examined the adequacy of the outputs for horizon scanning and decision-making across sectors. Validation of the climate suitability models has been attempted using independent UK and European detections of Phytophthora x alni.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T17:23:53.000Z","orcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-10-08T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/824f9ba8-7d1c-4a82-b5ec-a4f850f1d370","10.5285/824f9ba8-7d1c-4a82-b5ec-a4f850f1d370","doi:10.5285/824f9ba8-7d1c-4a82-b5ec-a4f850f1d370"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset scores the relative risks of Phytophthora x alni infection for 50034 fragments in Scotland identified as containing any of the three alder species susceptible to the pathogen (common alder, Italian alder and grey alder). Fragment risk scores integrate climate…","state":"published","title":"Spatial risk analysis for Phytophthora x alni infection of alder fragments in Scotland","topic":["0/Environmental risk/","0/Environmental survey/"],"version":1.0,"view":["public","tinzha"]},{"availability":"Unknown","catalogue":"eidc","description":"This data collection contains modelled and experimental datasets, used to investigate how air pollution and changes in climate may impact the floral scents that pollinators use to locate flowers (Volatile Organic Compounds (VOCs)). \nThe data collection includes GIS shapefiles of modelled data (surface ozone, ozone flux (POD1IAM), nitrogen dioxide) from the global EMEP (European Monitoring and Evaluation Programme) chemical transport model, with a seasonal average value calculated for the grassland growing season (mid-April to mid-July), for the USA and UK, per 1° by 1° grid cell, for the year 2018. Further data files include experimental data on flower number and flower size of UK wildflowers following ozone and warming treatments, collected in 2021 at the UKCEH solardome site in North Wales, UK. Hourly data on ozone concentration and meteorological conditions in the solardomes are also provided.  \n","documentType":"GEMINI_DOCUMENT","familyName":["Hayes"],"fullName":["Hayes, F."],"funder":["Natural Environment Research Council"],"givenName":["F."],"grant":["NE/T004819/1"],"identifier":"da266048-d4b2-47bb-a94e-9c64605fbb40","incomingCitationCount":0,"keyword":["air pollution","climate","floral VOCs","grasslands"],"keywordsOther":["air pollution","climate","floral VOCs","grasslands"],"licence":"Non-Open government licence","metadataDate":"2026-06-27T18:46:01.000Z","organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"publicationDate":"2024-01-08T00:00:00.000Z","recordType":"Data collection","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/da266048-d4b2-47bb-a94e-9c64605fbb40"],"resourceType":"Aggregation","ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"shortenedDescription":"This data collection contains modelled and experimental datasets, used to investigate how air pollution and changes in climate may impact the floral scents that pollinators use to locate flowers (Volatile Organic Compounds (VOCs)). \nThe data collection includes GIS…","state":"published","title":"Impacts of air pollution and climate change on floral VOC signals","version":1.0,"view":["public","glenn"]},{"authorAffiliation":["University of St Andrews","UK Centre for Ecology & Hydrology"],"authorFamilyName":["Miller","Smeaton","Garbutt","Austin"],"authorFullName":["Miller, L.C.","Smeaton, C.","Garbutt, A.","Austin, W.E.N."],"authorGivenName":["L.C.","C.","A.","W.E.N."],"authorOrcid":["https://orcid.org/0000-0003-2876-4312","https://orcid.org/0000-0003-4535-2555","https://orcid.org/0000-0002-9145-9786","https://orcid.org/0000-0001-6544-3468"],"authorRor":["https://ror.org/02wn5qz54","https://ror.org/00pggkr55"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"The dataset comprises of physical and biogeochemical measurements of belowground (root) biomass from across four Scottish saltmarshes. Sites were chosen to represent contrasting habitats types in Scotland, in particular sediment types, vegetation and sea level history. The data provide a quantitative measure of belowground (root) biomass, organic carbon content and belowground (root) carbon. Samples were collected using a wide gauge gouge corer. The samples were processed to determine belowground (root) biomass, the organic carbon was quantified through elemental analysis and these two data sets were combined to calculate the belowground (root) carbon content. The data were collected to help create a detailed picture of saltmarsh carbon storage in surficial soils across Scotland.\n\nThe work was carried out under the NERC programme - Carbon Storage in Intertidal Environment (C-SIDE), NERC grant reference NE/R010846/1","documentType":"GEMINI_DOCUMENT","familyName":["Smeaton","Miller","Garbutt","Austin"],"fullName":["Smeaton, C.","Miller, L.C.","Garbutt, A.","Austin, W.E.N."],"funder":["Natural Environment Research Council"],"givenName":["C.","L.C.","A.","W.E.N."],"grant":["NE/R010846/1"],"identifier":"032627e0-5780-4601-b9b3-e684403cee70","incomingCitationCount":0,"keyword":["Scotland","United Kingdom","C-SIDE","soil","sediment","biomass","carbon","organic carbon","organic matter","salt marsh","root","coastal","wetland","blue carbon"],"keywordsOther":["C-SIDE","soil","sediment","biomass","carbon","organic carbon","organic matter","salt marsh","root","coastal","wetland","blue carbon"],"keywordsPlace":["Scotland","United Kingdom"],"licence":"Open government licence","lineage":"Soil cores were taken at each sampling location using a wide diameter gouge corer. The location of the sample was recorded using GPS. Prior to analysis the samples were stored at 4 degrees Celsius at the University of St Andrews. Belowground (root) biomass, organic carbon content and belowground (root) carbon data was produced using standard analytical procedures (detailed in the supporting documentation). All laboratory equipment were calibrated in accordance with the laboratory practises at the University of St Andrews. Results were recorded on to lab sheets and transferred into an Excel file. Results were exported as comma separated value (.csv) files for ingestion into the EIDC.","locations":["POLYGON((-7.09 55.74, -7.09 58.99, -0.46 58.99, -0.46 55.74, -7.09 55.74))"],"metadataDate":"2026-06-29T16:51:55.000Z","orcid":["https://orcid.org/0000-0003-4535-2555","https://orcid.org/0000-0003-2876-4312","https://orcid.org/0000-0002-9145-9786","https://orcid.org/0000-0001-6544-3468"],"organisation":["University of St Andrews","UK Centre for Ecology & Hydrology","The University Court of the University of St Andrews","NERC EDS Environmental Information Data Centre"],"publicationDate":"2022-02-01T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/032627e0-5780-4601-b9b3-e684403cee70","10.5285/032627e0-5780-4601-b9b3-e684403cee70","doi:10.5285/032627e0-5780-4601-b9b3-e684403cee70"],"resourceType":"Dataset","rightsHolder":["The University Court of the University of St Andrews"],"ror":["https://ror.org/02wn5qz54","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"shortenedDescription":"The dataset comprises of physical and biogeochemical measurements of belowground (root) biomass from across four Scottish saltmarshes. Sites were chosen to represent contrasting habitats types in Scotland, in particular sediment types, vegetation and sea level history.…","state":"published","supplementalName":["C-SIDE website"],"title":"Physical and biogeochemical measurements of belowground biomass and carbon content from Scottish salt marshes, 2021","version":1.0,"view":["public","danor"]},{"authorAffiliation":["University of Birmingham","British Geological Survey"],"authorFamilyName":["Comer-Warner","Romeijn","Krause","Gooddy","Ullah"],"authorFullName":["Comer-Warner, S.","Romeijn, P.","Krause, S.","Gooddy, D.C.","Ullah, S."],"authorGivenName":["Sophie","P.","S.","D.C."],"authorOrcid":["https://orcid.org/0000-0003-1260-3151","https://orcid.org/0000-0001-9270-2453","https://orcid.org/0000-0003-2521-2248","https://orcid.org/0000-0002-6015-1332","https://orcid.org/0000-0002-9153-8847"],"authorRor":["https://ror.org/03angcq70","https://ror.org/04a7gbp98"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"The dataset contains carbon dioxide and methane emissions, as well as resorufin production (as a proxy for microbial metabolic activity) and dissolved oxygen concentrations, resulting from laboratory incubation experiments of streambed sediments. The sediments were collected from the upper 10 centimetres of the streambed in the River Tern and the River Lambourn in September 2015, with three samples collected from each river. These samples were collected from three areas: silt-dominated sediment underneath vegetation (fine), sand-dominated sediment from unvegetated zones (medium) and gravel-dominated sediment from unvegetated zones (coarse). The sediment was used in laboratory incubation experiments to determine the effect of temperature, organic matter content, substrate type and geological origin on streambed microbial metabolic activity, and carbon dioxide and methane production.\n\nThe work was carried out as part of a Natural Environment Research Council (NERC) funded PhD (NERC award number 1602135). The work was also part funded through the Seventh Framework Programme (EU grant number 607150).","documentType":"GEMINI_DOCUMENT","familyName":["Comer-Warner","Romeijn","Krause","Gooddy","Ullah"],"fullName":["Comer-Warner, S.","Romeijn, P.","Krause, S.","Gooddy, D.C.","Ullah, S."],"funder":["Natural Environment Research Council"],"givenName":["Sophie","P.","S.","D.C."],"identifier":"3a0a5132-797c-4ed5-98b9-1c17eaa2f2b7","incomingCitationCount":0,"keyword":["River Tern","River Lambourn","Sandstone","Microbial metabolic activity","Resazurin","Resorufin","Substrate type","Greenhouse gas production","streambed","chalk","carbon dioxide","sediment","methane","geology","greenhouse gas"],"keywordsOther":["Sandstone","Microbial metabolic activity","Resazurin","Resorufin","Substrate type","Greenhouse gas production","streambed","chalk","carbon dioxide","sediment","methane","geology","greenhouse gas"],"keywordsPlace":["River Tern","River Lambourn"],"licence":"Open government licence","lineage":"Sediment was collected using a shovel before being sieved (0.8 cm for fine, and 1.6 cm for medium and coarse) and homogenised prior to storage. The sediment was stored airtight in the cold and dark. Sediment of varying organic matter content from two geological origins (chalk and sandstone) was incubated at five temperatures (5, 9, 15, 21 and 26°C). Resorufin production was measured using a GGUN-FL30 on-line fluorometer, dissolved oxygen was measured using a Pyro-science Firesting fixed needle-type probe, and carbon dioxide and methane concentrations were measured using an Agilent 7890A Gas Chromatograph - Flame Ionisation Detector. The carbon dioxide and methane concentrations were converted to production per hour by calculating the difference in concentration between zero and five hours and normalising the production by the length of the incubation period. The data was then converted to emissions per volume of dry sediment using the Bunsen coefficient and the volume of sediment in each jar, resulting in units of milligrams of carbon per square metre per hour.  Greenhouse gas concentrations were corrected for any machine drift using results from a standard gas mixture ran periodically during gas analysis. The resorufin concentration was converted to production per hour by calculating the difference in concentration between zero and five hours and normalising the production by the length of the incubation period. The production was then normalised by the concentration of resazurin added to the jar, resulting in units of nanograms of resorufin per microgram of resazurin per hour. Data were entered into an Excel spreadsheet and exported as a comma separated value file (.csv) for ingestion into the EIDC.","locations":["POLYGON((-2.547 51.447, -2.547 52.854, -1.38 52.854, -1.38 51.447, -2.547 51.447))"],"metadataDate":"2026-06-29T17:10:00.000Z","orcid":["https://orcid.org/0000-0003-1260-3151","https://orcid.org/0000-0001-9270-2453","https://orcid.org/0000-0003-2521-2248","https://orcid.org/0000-0002-6015-1332","https://orcid.org/0000-0002-9153-8847"],"organisation":["University of Birmingham","British Geological Survey","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2018-05-04T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/3a0a5132-797c-4ed5-98b9-1c17eaa2f2b7","10.5285/3a0a5132-797c-4ed5-98b9-1c17eaa2f2b7","doi:10.5285/3a0a5132-797c-4ed5-98b9-1c17eaa2f2b7"],"resourceType":"Dataset","ror":["https://ror.org/03angcq70","https://ror.org/04a7gbp98","https://ror.org/04xw4m193"],"shortenedDescription":"The dataset contains carbon dioxide and methane emissions, as well as resorufin production (as a proxy for microbial metabolic activity) and dissolved oxygen concentrations, resulting from laboratory incubation experiments of streambed sediments. The sediments were…","state":"published","supplementalDescription":["Lemke, D., Schnegg, P. A., Schwientek, M., Osenbrück K. & Cirpka, O. A. On-line fluorometry of multiple reactive and conservative tracers in streams. Environ. Earth Sci. 69, 349-358 (2013) ","Hoogsteen, M. J. J., Lantinga, E. A., Bakker, E. J., Groot, J. C. J. & Tittonell, P. A. Estimating soil organic carbon through loss on ignition: Effects of ignition conditions and structural water loss. Eur. J. Soil Sci. 66, 320-328 (2015). "],"supplementalName":["Related paper"],"title":"Carbon dioxide and methane emissions from incubated streambed sediments from the rivers Tern and  Lambourn, England (2015)","version":1.0,"view":["public","danor"]},{"altTitle":["ESPA P4GES"],"authorAffiliation":["Laboratoire des Radio Isotopes, Université d'Antananarivo"],"authorFamilyName":["Razakamanarivo","Razafimbelo","Andriamananjara","Rianahary","Razafindrakoto","Harinirina"],"authorFullName":["Razakamanarivo, H.","Razafimbelo, T.","Andriamananjara, A.","Rianahary, A.","Razafindrakoto, M.","Harinirina, A."],"authorGivenName":["H.","T.","A.","M."],"authorOrcid":["https://orcid.org/0000-0003-3126-8192","https://orcid.org/0000-0003-2101-9715"],"authorRor":["https://ror.org/02w4gwv87"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"Data comprise soil profile (soil texture and pit description during fieldwork) and soil chemistry (bulk density, carbon content, carbon stock and organic carbon content obtained with thirteen carbon isotope analysis) from samples taken in the Ankeniheny Zahamena forest corridor, Madagascar.\n\nData were collected as part of a project funded by the Ecosystem Services for Poverty Alleviation (ESPA) programme under work package 4 P4GES project, grant references: NE/K008692/1, NE/K010115/1, and NE/K010220-1. ","documentType":"GEMINI_DOCUMENT","familyName":["Razakamanarivo","Razafimbelo","Andriamananjara","Rianahary","Razafindrakoto","Harinirina"],"fullName":["Razakamanarivo, H.","Razafimbelo, T.","Andriamananjara, A.","Rianahary, A.","Razafindrakoto, M.","Harinirina, A."],"funder":["Natural Environment Research Council"],"givenName":["Herintsitohaina","H.","T.","A.","M."],"grant":["NE/K008692/1","NE/K010115/1","NE/K010220/1"],"identifier":"c3884aa0-b083-469d-8a0d-fdbbb79aff05","incomingCitationCount":1,"keyword":["Madagascar","CAZ","Ankeniheny Zahamena forest corridor","ESPA","soil","carbon","delta 13C","bulk density","MIRS"],"keywordsOther":["soil","carbon","delta 13C","bulk density","MIRS"],"keywordsPlace":["Madagascar","CAZ","Ankeniheny Zahamena forest corridor"],"keywordsProject":["ESPA"],"licence":"Open government licence","lineage":"Two methods were applied for the soil sampling. One for bulk density samples and the other for soil carbon sampling.\n\nSoil sampling by auger for soil carbon determination. It is done in the 4 subplots every 10 cm depth for 0 to 100 cm. That means 0-10 cm, 10-20 cm, 20-30 cm, 30-40 cm, 40-50 cm, 50-60 cm, 60-70 cm, 70-80 cm, 80-90 cm and 90-100 cm depth.\n\nSoil sampling by cylinder for bulk density sampling. The metallic cylinder used for this sampling has a diameter of 8.1cm. It was performed in the soil pits located in the 3 subplots (subplot n°1, n°2 and n°3), according to the depths: 0-10 cm, 10-20 cm, 20-30 cm, 50-60 cm and 80-90 cm. These samples are used for the bulk density measurement. Some samples, to estimate the moisture were also taken in addition to these samples to the cylinder.\n\nSoil profile description. This activity was conducted in the subplot 1 soil pit located in the center of each plot, with a depth of 1.30 m. Its objectives was to determine and describe the different soil horizons, know their colors (by using the soil color of Munsell), their textures and structures and root depth. The abundance of roots and porosity were also observed and recorded.\n\nSoil sample were labelled and sent to the sample preparation room, where they undergo the following preparations:\n-\tair drying at least 3 days\n-\tsieving through a sieve with 2 mm size\n-\tsieved sample collected in a plastic bag and weighed again\n-\tcoarse soil (rocks) and coarse root fraction > 2 mm were also recovered in another bag and weighed\n-\tfor classic soil analysis were done on the soil sample, it was ground to 200 microns\nDifferent type of analysis is used for the quantification of the soil organic carbon.\nSoil drying to determine the moisture. To determine the moisture of the soil samples, they are dried in stoves at 105°C during 48 hours. After, they are weighted and the moisture is obtained by the difference between the weight before and after the drying. \n\nWalkley & Black method. The Walkley-Black titration method is one of the classical methods for rapid analysis of soil organic carbon. The organic material is oxidized without external heating by a sulfuric potassium dichromate solution. It is considered that the heat of solution of H2SO4 (120° C) is sufficient to oxidize 77% of carbon. The excess dichromate is determined by Mohr's salt (NH4) 2 Fe (SO4) 2, 6 H2O. The data obtained using these chemical analysis served as calibration reference for further soil analysis using spectrometry. \n\nMid Infra Red Spectroscopy (MIRS) soil analysis. The MIRS approach appeared to be a relatively recent soil analysis method. The principle is based on the absorption of infrared radiation by the organic matter. This absorption is related to the chemical composition of the samples. The measure of the light intensity absorbed at each wavelength leads to a characteristic spectrum of the studied product. Subsequently, it predicts the carbon organic contents by interpretation of the spectra. \n\nCarbon stable isotope analysis using 13C. A few soil samples were collected according their land use and carbon stock along the soil profile. These samples were sent to the Laboratoire de Biochimie et Physiologie Moléculaire des Plantes (LBMP montpelier) for stable isotope analysis.","locations":["POLYGON((43.191 -25.69, 43.191 -11.945, 50.484 -11.945, 50.484 -25.69, 43.191 -25.69))"],"metadataDate":"2026-06-29T16:55:43.000Z","orcid":["https://orcid.org/0000-0003-3126-8192","https://orcid.org/0000-0003-2101-9715"],"organisation":["Laboratoire des Radio Isotopes, Université d'Antananarivo","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"publicationDate":"2017-03-03T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c3884aa0-b083-469d-8a0d-fdbbb79aff05","10.5285/c3884aa0-b083-469d-8a0d-fdbbb79aff05","doi:10.5285/c3884aa0-b083-469d-8a0d-fdbbb79aff05"],"resourceType":"Dataset","ror":["https://ror.org/02w4gwv87","https://ror.org/04xw4m193"],"shortenedDescription":"Data comprise soil profile (soil texture and pit description during fieldwork) and soil chemistry (bulk density, carbon content, carbon stock and organic carbon content obtained with thirteen carbon isotope analysis) from samples taken in the Ankeniheny Zahamena forest…","state":"published","supplementalName":["Ecosystem services for poverty alleviation (ESPA)","P4GES: Can Paying for Global Ecosystem Services reduce poverty?","Laboratory of Radioisotopes"],"title":"Soil profile and chemistry data in the Ankeniheny Zahamena forest corridor, Madagascar","version":1.0,"view":["public","jgar"]},{"authorAffiliation":["University of Stirling","University of O'Higgins"],"authorFamilyName":["Jump","Greenwood","Venegas González","Paredes Berríos"],"authorFullName":["Jump, A.","Greenwood, S.","Venegas González, A.","Paredes Berríos, P."],"authorGivenName":["Alistair","Sarah","Alejandro","Pablo"],"authorOrcid":["https://orcid.org/0000-0002-2167-6451","https://orcid.org/0000-0001-9104-7936","https://orcid.org/0000-0003-4568-4533","https://orcid.org/0009-0004-8188-8044"],"authorRor":["https://ror.org/045wgfr59","https://ror.org/044cse639"],"availability":"Embargoed","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains forest structure and microclimate measurements collected from 60 plots of 125 m² each in La Campana National Park, Chile. The forest structure data record tree identity, species, condition, canopy cover, stem and resprouting characteristics, as well as biometric variables such as perimeter, height, and diameter at breast height. Plot-level information includes elevation and tree identifiers.\nMicroclimate data include soil moisture and temperature measured at three levels: underground, at ground level, and 30 cm above ground. These measurements provide fine-scale information on local environmental conditions within the forest.\nData were collected during the 2023-2024 austral summer season using systematic field surveys and standard forestry instruments. The dataset is designed to support research into forest mortality and resilience in Mediterranean-type ecosystems, where climate stress and disturbance are key drivers of change.\nThe resource was produced through collaboration between the University of Stirling (Scotland) and Universidad de O'Higgins (Chile), led by Prof. Alistair Jump, Dr. Sarah Greenwood, and Dr. Alejandro Venegas González.","documentType":"GEMINI_DOCUMENT","familyName":["Paredes-Berríos","Jump","Greenwood","Venegas González","Paredes Berríos"],"fullName":["Paredes-Berríos, P.","Jump, A.","Greenwood, S.","Venegas González, A.","Paredes Berríos, P."],"funder":["Natural Environment Research Council"],"givenName":["Pablo","Alistair","Sarah","Alejandro"],"grant":["NERC NE/Y004205/1"],"identifier":"23f751c8-11af-4991-8f37-a9baef1961eb","incomingCitationCount":0,"keyword":["Climate and climate change","Biodiversity","Central Chile","drought","forest ecology","Forest mortality","Mediterranean climate","Mediterranean forest","Mediterranean wood","tree mortality"],"keywordsOther":["Central Chile","drought","forest ecology","Forest mortality","Mediterranean climate","Mediterranean forest","Mediterranean wood","tree mortality"],"keywordsTheme":["Climate and climate change","Biodiversity"],"licence":"Open government licence","lineage":"The dataset was generated through systematic field surveys conducted during the 2023-2024 austral summer in La Campana National Park, Chile. Data collection was carried out across 60 temporary forest plots, each covering 125 m², established to characterise forest structure and near-ground microclimatic conditions.\nForest structure data were recorded for all trees with a minimum diameter at breast height (DBH) of 5 cm. Tree perimeter was measured in the field using diameter tapes, and DBH values were derived from perimeter measurements during data processing. Tree height was measured using a Haglöf Vertex 5 hypsometer. Additional variables collected included species identity, tree condition, canopy cover, stem characteristics, and resprouting status. Resprouting was recorded in the field and aggregated into a dedicated column within the dataset. Plot-level attributes, including elevation and tree identifiers, were also recorded.\nMicroclimate data were collected using TOMST TMS dataloggers deployed within each plot. Sensors recorded soil moisture and temperature at three vertical positions: below ground, at ground level, and 30 cm above ground. Measurements were logged at 15-minute intervals, providing high-resolution temporal data on local microclimatic conditions.\nFollowing field collection, datasets were compiled and standardised into consistent units (C°) and formats. Diameter values were calculated from measured perimeters. Data cleaning procedures were applied to remove void entries and obvious outliers resulting from recording or sensor errors. Basic consistency checks were performed to ensure logical ranges and internal coherence across variables.\nFormal calibration of instruments was not undertaken prior to field deployment. Measurements reflect standard forestry field practices.\nThe data represent a single-season snapshot and are therefore limited in their ability to capture interannual variability. The absence of formal sensor calibration may introduce minor systematic measurement uncertainty in microclimate variables. Visual or instrument-based estimates (e.g. canopy cover and height) may also be subject to observer-related variability. Despite these limitations, the dataset provides robust, fine-scale information suitable for assessing forest structure, microclimate, and ecological resilience in Mediterranean-type ecosystems.","locations":["POLYGON((-71.145 -32.985, -71.145 -32.95, -71.1 -32.95, -71.1 -32.985, -71.145 -32.985))"],"metadataDate":"2026-06-27T19:14:36.000Z","orcid":["https://orcid.org/0000-0002-2167-6451","https://orcid.org/0000-0001-9104-7936","https://orcid.org/0000-0003-4568-4533","https://orcid.org/0009-0004-8188-8044"],"organisation":["University of Stirling","University of O'Higgins","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-05-28T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/23f751c8-11af-4991-8f37-a9baef1961eb","10.5285/23f751c8-11af-4991-8f37-a9baef1961eb","doi:10.5285/23f751c8-11af-4991-8f37-a9baef1961eb"],"resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/044cse639","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains forest structure and microclimate measurements collected from 60 plots of 125 m² each in La Campana National Park, Chile. The forest structure data record tree identity, species, condition, canopy cover, stem and resprouting characteristics, as…","state":"published","title":"Forest structure, canopy health and microclimate condition assessments in La Campana National Park, Chile, during 2023-2024 season","topic":["0/Climate and climate change/","0/Biodiversity/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["University of Hull"],"authorFamilyName":["Delorme","Murphy","McLelland"],"authorFullName":["Delorme, P.","Murphy, B.J.","McLelland, S.J."],"authorGivenName":["P.","B.J.","S.J."],"authorOrcid":["https://orcid.org/0000-0002-5865-714X","https://orcid.org/0000-0002-1223-0917"],"authorRor":["https://ror.org/04nkhwh30"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains the elevation data of a 10m long, 20cm wide experimental river. This river was generated in an experimental flume (Total Environment Simulator) of the University of Hull. This river was formed spontaneously by imposing water and sediment flux at the upstream boundary of a flat sand bed. This model doesn’t attempt to reproduce any natural river, it’s a generic model design to explore the influence of discharge variation on the river evolution. We regularly measure the topography of the experimental area to follow the evolution of the river width, depth, slope, and conveyance capacity. The elevation is measured in metres.  The associated table contains the experimental characteristics: time (seconds), water discharge (L/min), and morphological characteristics extracted from the DEM. This is the raw data, so the width is in pixels, the depth is in metres and the conveyance capacity is in metre pixel.","documentType":"GEMINI_DOCUMENT","familyName":["Delorme","Murphy","McLelland"],"fullName":["Delorme, P.","Murphy, B.J.","McLelland, S.J."],"funder":["Natural Environment Research Council"],"givenName":["P.","B.J.","S.J."],"grant":["NE/S015795/2"],"identifier":"7b2071d6-da02-4f48-a87e-ccab19a737bd","incomingCitationCount":0,"keyword":["Hydrology","Modelling","flood sequencing","morphological evolution","experimental rivers","elevation"],"keywordsOther":["flood sequencing","morphological evolution","experimental rivers","elevation"],"keywordsTheme":["Hydrology","Modelling"],"licence":"Open government licence","lineage":"The data have been generated using a terrestrial laser scanner (Faro Focus X330). The laser scanner is in a fixed position above the experimental area. Seven targets (coordinates known) are erected in the area. Each scan is therefore reoriented using the location of the target, using the Faro software (Scene). We only accept scans with a re-orientation error lower than 0.5 mm. If the error is higher, we redo the scan.\n\nThe duration of a scan is about 10 minutes and the time between each scan depends on the experimental conditions (the exact duration between each scan can be found in the experimental data file).\n\nOnce the scan has been reoriented, we pre-process it using CloudCompare to select only the experimental area (remove the wall and instrument), we then convert this into a tiff file to analyse with python. \n\nThe scanner can’t see the surface under water, consequently we have to ensure that the experimental area is dry before we start scanning. If the surface is not dry the scan returns NaN values.\n","metadataDate":"2026-06-29T16:11:37.000Z","orcid":["https://orcid.org/0000-0002-5865-714X","https://orcid.org/0000-0002-1223-0917"],"organisation":["University of Hull","NERC EDS Environmental Information Data Centre"],"publicationDate":"2024-04-30T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7b2071d6-da02-4f48-a87e-ccab19a737bd","10.5285/7b2071d6-da02-4f48-a87e-ccab19a737bd","doi:10.5285/7b2071d6-da02-4f48-a87e-ccab19a737bd"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Hull"],"ror":["https://ror.org/04nkhwh30","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains the elevation data of a 10m long, 20cm wide experimental river. This river was generated in an experimental flume (Total Environment Simulator) of the University of Hull. This river was formed spontaneously by imposing water and sediment flux at…","state":"published","title":"Digital Elevation Model of an experimental river generated in a flume under variable discharge conditions","topic":["0/Hydrology/","0/Modelling/"],"version":1.0,"view":["public","jenroe"]},{"authorAffiliation":["Nord University","University of Cambridge","SMART Research Institute"],"authorFamilyName":["Eycott","Turner","Luke","Advento"],"authorFullName":["Eycott, A.E.","Turner, E.C.","Luke, S.H.","Advento, A.D."],"authorGivenName":["A. E.","E.C.","S. H.","A. D."],"authorOrcid":["https://orcid.org/0000-0002-8609-1091","https://orcid.org/0000-0003-2715-2234","https://orcid.org/0000-0002-8335-5960"],"authorRor":["https://ror.org/030mwrt98","https://ror.org/013meh722"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"Data comprise sunflower seed predation rates (i.e. number of seeds remaining) after 24 hours under different treatments in eighteen experimental plots plots established in 2013 as part of the Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) programme. Eighteen plots were examined across three estates - plots in Ujung Tanjung and Kandista estates were planted in 1987 to 1992 and are mature or over-mature oil palm, while Libo plots were replanted in 2014. Plots were organised in triplets and in Ujung Tanjung and Kandista, for each triplet one plot was assigned to each of three vegetation treatments: Reduced vegetation cover, normal vegetation management and enhanced vegetation cover.\n\nThe project 'Managing tropical agricultural ecosystems for resistance and recovery of ecosystem processes' was funded by the Natural Environment Research Council under NE/P00458X/1.","documentType":"GEMINI_DOCUMENT","familyName":["Turner","Eycott","Luke","Advento"],"fullName":["Turner, E.","Eycott, A.E.","Turner, E.C.","Luke, S.H.","Advento, A.D."],"funder":["Natural Environment Research Council"],"givenName":["Edgar","A. E.","E.C.","S. H.","A. D."],"grant":["NE/P00458X/1"],"identifier":"1256d475-f321-4a9b-b4ed-927e5b825d3f","incomingCitationCount":0,"keyword":["Indonesia","Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) ","Environmental survey","oil palm"],"keywordsOther":["oil palm"],"keywordsPlace":["Indonesia"],"keywordsProject":["Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) "],"keywordsTheme":["Environmental survey"],"licence":"Open government licence","lineage":"Granivory was measured once in mature oil palm in 2014 and five times in both mature and replanted stands during 2016-2017. The basic unit for the granivory test was ten shelled sunflower seeds placed on a paper disc of approx. 15 cm diameter, covered by a polystyrene disposable plate held approx. 10cm above the soil surface with kebab sticks in order to keep the rain off. For each replicate four treatments were applied: two of the paper discs had 1cm of thick chassis grease applied round the edge and two were in cages such that there were cage + grease, cage only, grease only, and open. The traps were metal grid boxes approximately 35 x 20 x 14 cm, with no holes wider than 1cm. One test (four treatments) was carried out at each of the three sampling positions in the plot. Samples were placed out in the field for approximately 24 hours before being assessed. \nBasic data checks were carried out (checks for impossible values, such as 11 of 10 seeds remaining). We have error-checked 50% of the data entry against the original field sheets, finding an acceptable error rate of <1% and correcting errors when we encountered them. All changes were recorded and that information remains with the dataset. \nSee Luke et al. (2019, doi: 10.3389/ffgc.2019.00075) for further details of the experimental set-up.","locations":["POLYGON((100.003 0.516, 100.003 1.812, 101.662 1.812, 101.662 0.516, 100.003 0.516))"],"metadataDate":"2026-06-29T17:18:44.000Z","orcid":["https://orcid.org/0000-0002-8609-1091","https://orcid.org/0000-0003-2715-2234","https://orcid.org/0000-0002-8335-5960"],"organisation":["University of Cambridge","Nord University","SMART Research Institute","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2019-11-19T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1256d475-f321-4a9b-b4ed-927e5b825d3f","10.5285/1256d475-f321-4a9b-b4ed-927e5b825d3f","doi:10.5285/1256d475-f321-4a9b-b4ed-927e5b825d3f"],"resourceType":"Dataset","ror":["https://ror.org/013meh722","https://ror.org/030mwrt98","https://ror.org/04xw4m193"],"shortenedDescription":"Data comprise sunflower seed predation rates (i.e. number of seeds remaining) after 24 hours under different treatments in eighteen experimental plots plots established in 2013 as part of the Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) programme.…","state":"published","supplementalDescription":["Luke, S. H., Advento, A. D., Aryawan, A. A. K., Adhy, D. N., Ashton-Butt, A., Barclay, H., … Turner, E. C. (2020). Managing Oil Palm Plantations More Sustainably: Large-Scale Experiments Within the Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) Programme. Frontiers in Forests and Global Change, 2.","Eycott, A.E., Advento, A.D., Waters, H.S., Luke, S.H., Aryawan, A.A.K., Hood, A.S., … Turner, E.C. (2019). Resilience of ecological functions to drought in an oil palm agroecosystem. Environmental Research Communications, 1(10), 101004."],"supplementalName":["BEFTA website"],"title":"Sunflower seed predation rates in Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) plots, Kandista and Ujun Tanjung estates, Indonesia","topic":["0/Environmental survey/"],"version":1.0,"view":["public","jgar"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University"],"authorFamilyName":["Perry","Wachowiak","Donnelly","Cavers"],"authorFullName":["Perry, A.","Wachowiak, W.","Donnelly, K.","Cavers, S."],"authorGivenName":["A.","W.","K.","S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"availability":"Available","catalogue":"eidc","dataFormat":["Plain text"],"description":"This dataset contains details of the phenotypes (height, bud set and budburst) and genotypes (via SNP array) of trees from a common garden multi-species pine (Pinus sylvestris, Pinus mugo and Pinus uncinata) glasshouse trial between 2010 and 2013.","documentType":"GEMINI_DOCUMENT","familyName":["Perry","Wachowiak","Donnelly","Cavers"],"fullName":["Perry, A.","Wachowiak, W.","Donnelly, K.","Cavers, S."],"funder":["Natural Environment Research Council"],"givenName":["A.","W.","K.","S."],"grant":["NE/K012177/1"],"identifier":"55118e26-cf5c-41d6-9157-738fce6bdddf","incomingCitationCount":0,"keyword":["Phenology","budburst","height","SNP array","genotypes","Scots pine"],"keywordsOther":["budburst","height","SNP array","genotypes","Scots pine"],"keywordsTheme":["Phenology"],"licence":"Open government licence","lineage":"A common garden glasshouse trial was established in 2010 using seed from natural populations from three species of pine: Pinus sylvestris (SY), Pinus mugo (MU), Pinus uncinata (UN). Open-pollinated seeds were collected from three to five trees per population from twenty-eight natural populations in Europe covering the geographic range of each species. The collection consisted of thirteen populations of SY, nine MU, and six UN. The trial was divided into 25 randomized blocks with up to five families per population, of which the first 18 blocks were analysed by Wachowiak et al. (2018a).\n\nPhenotypes (height, bud set and budburst) were assessed in the glasshouse during spring (budburst), autumn (bud set) and winter (height) between 2010 and 2013. \n\nA subset of trees were selected to be genotyped using a multi-species SNP array. Trees were genotyped using a multi-species SNP array (Perry et al., 2020). DNA was extracted from needles using a Qiagen DNeasy 96 kit following the manufacturer’s instructions. Needles were dried on silica gel prior to extraction and DNA was quantified using a Qubit spectrophotometer to ensure a minimum standardized concentration of 35ng/µl. The quality of genomic DNA was also checked visually for fragmentation on 1 % agarose gel.\n\nGenotyping was done at Edinburgh Genomics following DNA amplification, fragmentation, chip hybridisation, single-base extension through DNA ligation and signal amplification performed according to the Affymetrix Axiom® Assay protocol. Genotyping was performed in 384-well format on a GeneTitan according to the manufacturer’s procedure. Genotype calls were performed using Axiom Analysis Suite software as recommended by the manufacturer (ThermoFisher). Samples were assigned to an analysis group based on their call rate (CR) and dish QC (DQC: a metric provided by ThermoFisher which is generated by measuring signals at multiple sites in the genome known not to vary among individuals), using the following thresholds: DQC ‘high’ ≥ 0.82; DQC ‘low’ < 0.82; CR ‘high’ ≥ 96; CR ‘low’ < 96. Analyses: 1) DQC high + CR high; 2) DQC high + CR low; 3) DQC low + CR low. High quality samples (N=529), with high CR and DQC, were used to set thresholds for allele calls. Posteriors for allele calls were subsequently used as priors for analyses 2 (N = 753) and 3 (N = 251).","locations":["POLYGON((-3.358 55.877, -3.358 56.003, -3.013 56.003, -3.013 55.877, -3.358 55.877))"],"metadataDate":"2026-06-29T18:18:34.000Z","orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University","NERC EDS Environmental Information Data Centre"],"publicationDate":"2021-08-31T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/55118e26-cf5c-41d6-9157-738fce6bdddf","10.5285/55118e26-cf5c-41d6-9157-738fce6bdddf","doi:10.5285/55118e26-cf5c-41d6-9157-738fce6bdddf"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains details of the phenotypes (height, bud set and budburst) and genotypes (via SNP array) of trees from a common garden multi-species pine (Pinus sylvestris, Pinus mugo and Pinus uncinata) glasshouse trial between 2010 and 2013.","state":"published","title":"Single nucleotide polymorphism (SNP) genotypes and phenotypes for marker-trait association analysis of three pine species grown in a glasshouse","topic":["0/Phenology/"],"version":1.0,"view":["public","margla"]},{"authorAffiliation":["Centre for Ecology & Hydrology","University of Leeds","Met Office"],"authorFamilyName":["Comyn-Platt","Hayman","McNorton","Gedney"],"authorFullName":["Comyn-Platt, E.","Hayman, G.D.","McNorton, J.","Gedney, N."],"authorGivenName":["Edward ","G.D.","J.","N."],"authorOrcid":["https://orcid.org/0000-0001-7821-4998","https://orcid.org/0000-0003-3825-4156"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/024mrxd33","https://ror.org/01ch2yn61"],"availability":"Available","catalogue":"eidc","dataFormat":["NetCDF"],"description":"This dataset is a model output from the JULES land surface model driven with the Watch Forcing Data methodology applied to Era-Interim (WFDEI) data. It provides monthly global methane emissions from natural wetlands on 0.5 x 0.5 degree grid between 1980-2014. It includes the following variables:\n - fch4_wetl: modelled methane flux from natural wetland, in mg CH4 m-2 day-1\n - fwetl: fraction of wetland\n - cs: soil carbon in each of these four soil carbon pools: decomposable plant material, resistant plant material, microbial biomass and humus), in kg m-2 \n - t_soil: sub-surface temperature of the four modelled soil layers (0-0.1 m, 0.1-0.35 m, 0.35-1.0 m and 1.0-2.0 m), in K","documentType":"GEMINI_DOCUMENT","familyName":["Comyn-Platt","Hayman","McNorton","Gedney"],"fullName":["Comyn-Platt, E.","Hayman, G.D.","McNorton, J.","Gedney, N."],"funder":["Natural Environment Research Council"],"givenName":["Edward ","G.D.","J.","N."],"grant":["NE/N015746/1"],"identifier":"6ce61e91-6912-4fe2-a095-12136af86347","incomingCitationCount":0,"keyword":["Methane emissions","Methane fluxes","Carbon fluxes","Land Surface Model","JULES","wetlands ecosystem","methane"],"keywordsOther":["Methane emissions","Methane fluxes","Carbon fluxes","Land Surface Model","JULES","wetlands ecosystem","methane"],"licence":"Open government licence","lineage":"Data is produced by the JULES v 4.5 model. JULES was driven with the Watch Forcing Data methodology applied to Era-Interim (WFDEI) meteorological data. Ancillary data used in the simulation are:  (1) Van Genuchten soil properties from the Harmonised World Soil Database  (HWSD); (2) International Geosphere-Biosphere Programme (IGBP) land cover data; (3) High-resolution global topographic index values (Marthews, 2015; https://doi.org/10.5285/6b0c4358-2bf3-4924-aa8f-793d468b92be). JULES output was reprojected on to a 2D grid and the natural wetland methane emissions were scaled to give a global total of 180 Tg of methane in 2000 in post processing.","locations":["POLYGON((-180 -90, -180 90, 180 90, 180 -90, -180 -90))"],"metadataDate":"2026-06-27T19:11:52.000Z","orcid":["https://orcid.org/0000-0001-7821-4998","https://orcid.org/0000-0003-3825-4156"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","University of Leeds","Met Office","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2018-01-25T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/6ce61e91-6912-4fe2-a095-12136af86347","10.5285/6ce61e91-6912-4fe2-a095-12136af86347","doi:10.5285/6ce61e91-6912-4fe2-a095-12136af86347"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/024mrxd33","https://ror.org/01ch2yn61","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset is a model output from the JULES land surface model driven with the Watch Forcing Data methodology applied to Era-Interim (WFDEI) data. It provides monthly global methane emissions from natural wetlands on 0.5 x 0.5 degree grid between 1980-2014. It includes…","state":"published","title":"Monthly global methane emissions from natural wetlands modelled by JULES with dynamic vegetation (1980-2014) v1.0","version":1.0,"view":["public","nuri"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorFamilyName":["Brown","Van Dijk","Pickard"],"authorFullName":["Brown, A.M.","Van Dijk, N.","Pickard, A.E."],"authorGivenName":["A.M.","N.","A.E."],"authorOrcid":["https://orcid.org/0000-0001-6878-4065","https://orcid.org/0000-0003-1069-3720"],"authorRor":["https://ror.org/00pggkr55"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"Greenhouse gas (GHG) concentrations and physio-chemical water properties are available for a two-year period (January 2020 - December 2021) across twenty-six locations in the River Clyde and its tributaries and two locations within the Clyde estuary to support understanding of the GHG sources and sinks and their associated mechanisms in the Clyde catchment.","documentType":"GEMINI_DOCUMENT","familyName":["Brown","Van Dijk","Pickard"],"fullName":["Brown, A.M.","Van Dijk, N.","Pickard, A.E."],"funder":["Natural Environment Research Council"],"givenName":["A.M.","N.","A.E."],"identifier":"c3527258-c9ab-40d9-af0c-ddedabbd67a1","incomingCitationCount":1,"keyword":["UK","Scotland","River Clyde catchment ","Climate and climate change","Water quality","nitrous oxide","riverine","greenhouse gas","estuary","nitrogen oxides","water quality","methane"],"keywordsOther":["nitrous oxide","riverine","greenhouse gas","estuary","nitrogen oxides","water quality","methane"],"keywordsPlace":["UK","Scotland","River Clyde catchment "],"keywordsTheme":["Climate and climate change","Water quality"],"licence":"Open government licence","lineage":"The field data were collected between Jan 2020 and Dec 2021 monthly and analysed within the lab at UKCEH as part of an IAPETUS 2 DTP NERC funded PHD.  \nData were carefully quality controlled to check analytical methods data was correct including cross checking of data from different and methodologies and between surveys.   Any suspect data have been removed.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T17:07:06.000Z","orcid":["https://orcid.org/0000-0001-6878-4065","https://orcid.org/0000-0003-1069-3720"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","University of Glasgow"],"publicationDate":"2023-03-10T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c3527258-c9ab-40d9-af0c-ddedabbd67a1","10.5285/c3527258-c9ab-40d9-af0c-ddedabbd67a1","doi:10.5285/c3527258-c9ab-40d9-af0c-ddedabbd67a1"],"resourceType":"Dataset","rightsHolder":["University of Glasgow","UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"shortenedDescription":"Greenhouse gas (GHG) concentrations and physio-chemical water properties are available for a two-year period (January 2020 - December 2021) across twenty-six locations in the River Clyde and its tributaries and two locations within the Clyde estuary to support understanding…","state":"published","title":"Greenhouse gas and water chemistry measurements for the Clyde river, tributaries and estuary, 2021-2022","topic":["0/Climate and climate change/","0/Water quality/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["University of Cambridge"],"authorFamilyName":["Criswell","Head"],"authorFullName":["Criswell, K.E.","Head, J.J."],"authorGivenName":["K.E.","J.J."],"authorRor":["https://ror.org/013meh722"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)","Plain text","STL","TIFF"],"description":"Computed tomography (CT) scans of 212 museum specimens, including mostly cartilaginous and bony fishes as well as several reptiles and amphibians, were obtained to quantitatively study vertebral column morphology and regionalisation. The specimens are housed in the University of Cambridge Museum of Zoology or the Natural History Museum in London (specimen identification numbers can be found in the supporting documentation). \n\nThese data consist of \n1) series of tiff images that can be imported into CT segmenting software to reconstruct their shape in three dimensions; \n2) STL files of each vertebra for a subset of the specimens scanned;\n3) 3D landmark coordinates or measurements for each vertebra for a subset of taxa scanned;\n4) tables of results from regionalisation analyses, and\n5) photographs of eight fossil fish specimens\n\nSupplemental files include details of the data collection procedures, specimen identification numbers and updated taxonomy, and CT scanning parameters for all scans.","documentType":"GEMINI_DOCUMENT","familyName":["Criswell","Head"],"fullName":["Criswell, K.E.","Head, J.J."],"funder":["Natural Environment Research Council"],"givenName":["K.E.","J.J."],"grant":["NE/S000739/1"],"identifier":"1c76e443-da02-4bc4-a041-0f79adc016be","incomingCitationCount":0,"keyword":["Evolutionary ecology","morphology","fish","anatomy","axial regionalisation","vertebral column"],"keywordsOther":["morphology","fish","anatomy","axial regionalisation","vertebral column"],"keywordsTheme":["Evolutionary ecology"],"licence":"Open government licence","lineage":"Computed tomography scans of museum specimens were obtained at the Cambridge Biotomography Centre using a Nikon  XTEK H 225 ST MicroCT scanner. Post-processing to optimise CT reconstructions and minimise scan artefacts was performed in Nikon’s CT-Pro program, and scan reslicing was performed using VG STUDIOMAX (Volume Graphics). Segmentation of CT scans resulting STL files was performed in either Mimics (Materialise) or VG STUDIOMAX (Volume Graphics). Landmark coordinates of vertebrae were plotted using Stratovan Checkpoint. Regionalisation analyses were conducted in the R software environment, with method details described in the supporting documentation for the data ","metadataDate":"2026-06-27T14:03:01.000Z","organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre"],"publicationDate":"2024-01-15T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1c76e443-da02-4bc4-a041-0f79adc016be","10.5285/1c76e443-da02-4bc4-a041-0f79adc016be","doi:10.5285/1c76e443-da02-4bc4-a041-0f79adc016be"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/04xw4m193"],"shortenedDescription":"Computed tomography (CT) scans of 212 museum specimens, including mostly cartilaginous and bony fishes as well as several reptiles and amphibians, were obtained to quantitatively study vertebral column morphology and regionalisation. The specimens are housed in the…","state":"published","supplementalName":["hox gene expression predicts tetrapod-like axial regionalization in the skate, Leucoraja erinacea"],"title":"Morphological and morphometric data on the axial skeletons of vertebrates from museum specimens","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","shar1"]},{"authorAffiliation":["University of Glasgow"],"authorFamilyName":["Bass","Coleman","Waldron","Scott"],"authorFullName":["Bass, A.M.","Coleman, M.","Waldron, S.","Scott, M."],"authorGivenName":["A.M.","M.","S."],"authorOrcid":["https://orcid.org/0000-0003-3982-6582","https://orcid.org/0000-0002-2683-0761","https://orcid.org/0000-0002-3709-0623"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This data set covers high resolution (30-min frequency) water quality and dissolved carbon data from a peatland river in Southwest Scotland (5.8 km2), part of the Whitelee Wind Farm complex. The data set covers approx. 2.5 years including two full hydrological years and 261 individual flood events between 23/05/2012 and 16/12/2014. Carbon data was measured using a Scan Spectrolyser – a field deployable UV-Vis light spectrometer. ","documentType":"GEMINI_DOCUMENT","familyName":["Bass","Coleman","Waldron","Scott"],"fullName":["Bass, A.M.","Coleman, M.","Waldron, S.","Scott, M.","Bass, A."],"funder":["Natural Environment Research Council"],"givenName":["A.M.","M.","S.","Adrian"],"identifier":"4c591c29-01c9-493b-806e-7253e2682376","incomingCitationCount":0,"keyword":["Hydrology","Water quality","Peatland ","Spectrolyser","UV-Vis","Hysteresis","Discharge event","Time-series","Hydrograph","River chemistry","Dissolved organic matter","organic matter","hydrography","flood","peat","dissolved organic carbon","particulate organic carbon"],"keywordsOther":["Peatland ","Spectrolyser","UV-Vis","Hysteresis","Discharge event","Time-series","Hydrograph","River chemistry","Dissolved organic matter","organic matter","hydrography","flood","peat","dissolved organic carbon","particulate organic carbon"],"keywordsTheme":["Hydrology","Water quality"],"licence":"Open government licence","lineage":"Data was initially collected as part of a NERC funded PhD project, and subsequently further analysed by Bass AM and co-authors for publication. Water quality sensors were calibrated against standard solutions for pH and conductivity. Dissolved organic carbon (DOC) data was calibrated against data analysed on a Thermolox(TM) TOC analyser. ","locations":["POLYGON((-4.328 55.658, -4.328 55.686, -4.282 55.686, -4.282 55.658, -4.328 55.658))"],"metadataDate":"2026-06-29T18:02:19.000Z","orcid":["https://orcid.org/0000-0003-3982-6582","https://orcid.org/0000-0002-2683-0761","https://orcid.org/0000-0002-3709-0623"],"organisation":["University of Glasgow","NERC EDS Environmental Information Data Centre"],"publicationDate":"2023-08-18T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/4c591c29-01c9-493b-806e-7253e2682376","10.5285/4c591c29-01c9-493b-806e-7253e2682376","doi:10.5285/4c591c29-01c9-493b-806e-7253e2682376"],"resourceType":"Dataset","rightsHolder":["University of Glasgow"],"ror":["https://ror.org/04xw4m193","https://ror.org/00vtgdb53"],"shortenedDescription":"This data set covers high resolution (30-min frequency) water quality and dissolved carbon data from a peatland river in Southwest Scotland (5.8 km2), part of the Whitelee Wind Farm complex. The data set covers approx. 2.5 years including two full hydrological years…","state":"published","title":"Physico-chemical properties and discharge of a peatland river, Drumtree, Scotland, May 2012 to December 2014","topic":["0/Hydrology/","0/Water quality/"],"version":1.0,"view":["public","clwe"]},{"authorAffiliation":["University of Stirling","University of Manchester","UK Centre for Ecology & Hydrology","Universität Innsbruck","Helmholtz Zentrum München","Bangor University","Lancaster University"],"authorFamilyName":["Broadbent","Pritchard","Newbold","Giunta","Schloter","Bahn","Griffiths","Bardgett"],"authorFullName":["Broadbent, A.","Pritchard, W.","Newbold, L.","Giunta, A.","Schloter, M.","Bahn, M.","Griffiths, R.","Bardgett, R."],"authorGivenName":["A.","W.","L.","M.","R."],"authorOrcid":["https://orcid.org/0000-0002-8438-7163"],"authorRor":["https://ror.org/045wgfr59","https://ror.org/027m9bs27","https://ror.org/00pggkr55","https://ror.org/054pv6659","https://ror.org/00cfam450","https://ror.org/006jb1a24","https://ror.org/04f2nsd36"],"availability":"Embargoed","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains information about soil biogeochemical parameters from a lab manipulation experiment that was part of a study testing freeze-thaw and drought effects on alpine soil microbial communities and biogeochemistry. The soil was collected from Vent, Austria in March 2021. It was then shipped to the Soil and Ecosystem Ecology Lab at the University of Manchester, where the experiment was conducted in April -  August 2021.  Various soil biogeochemical properties were measured on destructively harvested samples at five experimental timepoints. The soil samples had been subjected to different treatment combinations throughout the experiment (see lineage for details). For details on each parameter, see the supporting documentation.","documentType":"GEMINI_DOCUMENT","familyName":["Broadbent","Pritchard","Newbold","Giunta","Schloter","Bahn","Griffiths","Bardgett"],"fullName":["Arthur Broadbent","Broadbent, A.","Pritchard, W.","Newbold, L.","Giunta, A.","Schloter, M.","Bahn, M.","Griffiths, R.","Bardgett, R."],"funder":["Natural Environment Research Council"],"givenName":["A.","W.","L.","M.","R."],"grant":["NE/T007222/1"],"identifier":"d7b9c848-2bd2-4c33-b017-151116081abf","incomingCitationCount":0,"keyword":["Climate and climate change","Soil","alpine","biogeochemistry","climate change"],"keywordsOther":["alpine","biogeochemistry","climate change"],"keywordsTheme":["Climate and climate change","Soil"],"licence":"Open government licence","lineage":"Soil (10-cm depth) was collected in the field (field site near Vent, Austria) using a spade and shipped to the University of Manchester on ice. An incubation experiment was run testing freeze-thaw and drought effects. The experimental treatments included freeze-thaw cycle frequency (0, 1, 2 and 4 cycles of freezing and thawing) followed by drought intensity (9 point gradient of 10-60% Water Holding Capacity (WHC) of soil). Samples were destructively harvested and soil biogeochemical data were measured using a Seal AA3 Segmented Flow Multi-chemistry analyser (Seal Analytical, UK), a 5000A TOC analyser (Shimadzu, Japan), and an Elementar Vario EL elemental analyser (Hanau, Germany) at the Soil and Ecosystem Ecology Lab at the University of Manchester. Specifically, dissolved organic carbon (DTOC) and nitrogen (DON); dissolved NH4+ (DNH4) and NO3- (DNO3); KCl-extracted NH4+ (ENH4) and NO3- (ENO3); Microbial biomass C (MBC), N (MBN), and C:N ratio (MBCN); soil %C (pct_C), %N (pct_N) and C:N ratio (CN_ratio). All instruments were calibrated to cover the full range of sample values. This varied depending on the timepoint, instrument and variable being analysed. Standard practice and protocols within the Soil Ecology and Ecosystem lab at the University of Manchester were followed at all times. Any samples that fell outwith the calibrated range of the instrument were re-analysed with a new calibration to cover the extended range. Appropriate quality control standards were inserted approximately every 20 samples on every run on each instrument to determine the readings were accurate. Three blanks of the extraction matrix (i.e., water, KCl or K2SO4) were measured during every run and subtracted from the samples to account for background concentrations. If errors were detected, the instruments were repaired, and samples were re-run. Raw data were converted into concentrations (per gram of dry soil).","locations":["POLYGON((10.897 46.863, 10.897 46.863, 10.897 46.863, 10.897 46.863, 10.897 46.863))"],"metadataDate":"2026-06-27T18:59:53.000Z","orcid":["https://orcid.org/0000-0002-8438-7163"],"organisation":["University of Stirling","University of Manchester","UK Centre for Ecology & Hydrology","Universität Innsbruck","Helmholtz Zentrum München","Bangor University","Lancaster University","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-11-28T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/d7b9c848-2bd2-4c33-b017-151116081abf","10.5285/d7b9c848-2bd2-4c33-b017-151116081abf","doi:10.5285/d7b9c848-2bd2-4c33-b017-151116081abf"],"resourceType":"Dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/045wgfr59","https://ror.org/027m9bs27","https://ror.org/00pggkr55","https://ror.org/054pv6659","https://ror.org/00cfam450","https://ror.org/006jb1a24","https://ror.org/04f2nsd36","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains information about soil biogeochemical parameters from a lab manipulation experiment that was part of a study testing freeze-thaw and drought effects on alpine soil microbial communities and biogeochemistry. The soil was collected from Vent, Austria…","state":"published","title":"Soil biogeochemical data from an incubation experiment testing freeze-thaw and drought effects on alpine soil from Vent, Austria","topic":["0/Climate and climate change/","0/Soil/"],"version":1.0,"view":["public","clwe"]},{"authorAffiliation":["Centre for Ecology & Hydrology","Bangor University"],"authorFamilyName":["Marshall","Cooper","Glanville","Jones"],"authorFullName":["Marshall, M.R.","Cooper, D.M.","Glanville, H.C.","Jones, D."],"authorGivenName":["M.R.","D.M.","H.C. ","D."],"authorOrcid":["https://orcid.org/0000-0003-2869-0616","https://orcid.org/0000-0001-7578-7918","https://orcid.org/0000-0002-8192-6678"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/006jb1a24"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"Data are presented of tensiometer measurements as centimetres of water from a field experiment in the Conwy catchment. The data were collected between October 2013 and January 2015 using tensiometers inserted into boreholes.\n\nThe data were collected by trained members of staff from Bangor University and the Centre for Ecology & Hydrology.\n\nThe samples were taken to provide supporting information for assessing the relationship between soil microbial populations and soil moisture status.\n\nThe data were collected for the NERC project 'The Multi-Scale Response of Water quality, Biodiversity and Carbon Sequestration to Coupled Macronutrient Cycling from Source to Sea' (NE/J011991/1). The project is also referred to as Turf2Surf.","documentType":"GEMINI_DOCUMENT","familyName":["Cooper","Marshall","Glanville","Jones"],"fullName":["Cooper, D.M.","Marshall, M.R.","Glanville, H.C.","Jones, D."],"funder":["Natural Environment Research Council"],"givenName":["D.M.","M.R.","H.C. ","D."],"grant":["NE/J011991/1"],"identifier":"875ca233-ffaa-45c2-b4d2-db7d21bc0e61","incomingCitationCount":0,"keyword":["Tensiometer","Conwy catchment","Environmental survey","Soil","Turf2Surf (T2S)","Macronutrient Cycling Programme","MCP"],"keywordsInstrument":["Tensiometer"],"keywordsOther":["Turf2Surf (T2S)","Macronutrient Cycling Programme","MCP"],"keywordsPlace":["Conwy catchment"],"keywordsTheme":["Environmental survey","Soil"],"licence":"Open government licence","lineage":"Tensiometers were inserted vertically into holes bored using a hand auger. Soil water potential was measured using refillable Delta-T Devices type SWT4R tensiometers connected to a Delta-T logger. Data were regularly downloaded using Delta-T software to a laptop. \nData were entered into an Excel spreadsheet and exported as a .csv file for ingestion into the EIDC\n","locations":["POLYGON((-3.784 53.201, -3.784 53.204, -3.781 53.204, -3.781 53.201, -3.784 53.201))"],"metadataDate":"2026-06-29T16:55:52.000Z","orcid":["https://orcid.org/0000-0003-2869-0616","https://orcid.org/0000-0001-7578-7918","https://orcid.org/0000-0002-8192-6678"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre","Bangor University"],"publicationDate":"2018-06-21T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/875ca233-ffaa-45c2-b4d2-db7d21bc0e61","10.5285/875ca233-ffaa-45c2-b4d2-db7d21bc0e61","doi:10.5285/875ca233-ffaa-45c2-b4d2-db7d21bc0e61"],"resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193","https://ror.org/006jb1a24"],"shortenedDescription":"Data are presented of tensiometer measurements as centimetres of water from a field experiment in the Conwy catchment. The data were collected between October 2013 and January 2015 using tensiometers inserted into boreholes.\n\nThe data were collected by trained members…","state":"published","supplementalDescription":["Project website"],"supplementalName":["Turf2Surf"],"title":"Tensiometer measurements from a field experiment in the Conwy valley, North Wales, UK (2013 - 2015)","topic":["0/Environmental survey/","0/Soil/"],"version":1.0,"view":["public","danor"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorFamilyName":["Morton","Marston","O'Neil","Rowland"],"authorFullName":["Morton, R.D.","Marston, C.G.","O'Neil, A.W.","Rowland, C.S."],"authorGivenName":["R.D.","C.G.","A.W.","C.S."],"authorOrcid":["https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3591-1034","https://orcid.org/0000-0002-0459-506X"],"authorRor":["https://ror.org/00pggkr55"],"availability":"Controlled","catalogue":"eidc","dataFormat":["TIFF"],"description":"This is a 25m pixel data set representing the land surface of Great Britain, classified into 21 UKCEH land cover classes, based upon Biodiversity Action Plan broad habitats. It is a three-band raster in GeoTiff format, produced by rasterising three properties of the classified land parcels dataset. The first band gives the most likely land cover type; the second band gives the per-parcel probability of the land cover, the third band is a measure of parcel purity. The probability and purity bands (scaled 0 to 100) combine to give an indication of uncertainty.  A full description of this and all UKCEH LCM2023 products are available from the LCM2023 product documentation.","documentType":"GEMINI_DOCUMENT","familyName":["Marston","Morton","O'Neil","Rowland"],"fullName":["Marston, C.G.","Morton, R.D.","O'Neil, A.W.","Rowland, C.S."],"funder":["Natural Environment Research Council"],"givenName":["C.G.","R.D.","A.W.","C.S."],"grant":["NE/R016429/1"],"identifier":"ab10ea4a-1788-4d25-a6df-f1aff829dfff","incomingCitationCount":1,"keyword":["Great Britain","Land cover","Biodiversity Action Plan","habitat","map","land cover"],"keywordsOther":["Biodiversity Action Plan","habitat","map","land cover"],"keywordsPlace":["Great Britain"],"keywordsTheme":["Land cover"],"licence":"Non-Open government licence","lineage":"UKCEH's automated land cover algorithms classify 10 m pixels across the whole of UK. Training data were automatically selected from stable land covers over the interval of 2020 to 2022. A Random Forest classifier used these to classify four composite images representing per season median surface reflectance. Seasonal images were integrated with context layers (e.g., height, aspect, slope, coastal proximity, urban proximity and so forth) to reduce confusion among classes with similar spectra.  \n\nLand cover was validated by organising the 10 m pixel classification into a land parcel framework (the LCM2023 classified land parcels product). The classified land parcels were compared to known land cover producing a confusion matrix to determine overall and per class accuracy. Details are available from the product documentation.\n\nThe 25 m rasterised land parcels product is created by pixelating the corresponding land parcel product.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"metadataDate":"2026-06-27T13:54:20.000Z","orcid":["https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0003-3591-1034","https://orcid.org/0000-0002-0459-506X"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"publicationDate":"2024-05-17T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/ab10ea4a-1788-4d25-a6df-f1aff829dfff","10.5285/ab10ea4a-1788-4d25-a6df-f1aff829dfff","doi:10.5285/ab10ea4a-1788-4d25-a6df-f1aff829dfff"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"shortenedDescription":"This is a 25m pixel data set representing the land surface of Great Britain, classified into 21 UKCEH land cover classes, based upon Biodiversity Action Plan broad habitats. It is a three-band raster in GeoTiff format, produced by rasterising three properties of the…","state":"published","title":"Land Cover Map 2023 (25m rasterised land parcels, GB)","topic":["0/Land cover/"],"version":1.0,"view":["public","rafbar"]},{"authorAffiliation":["Swansea University","US Forest Service"],"authorFamilyName":["Laino","Cabo","Parsons","Hudak","Doerr","Santin"],"authorFullName":["Laino, D.","Cabo, C.","Parsons, R.A.","Hudak, A.T.","Doerr, S.","Santin, C."],"authorGivenName":["D.","C.","R.A.","A.T.","S"],"authorOrcid":["https://orcid.org/0000-0002-7106-0559","https://orcid.org/0000-0002-0387-9052","https://orcid.org/0000-0001-5091-8993","https://orcid.org/0000-0001-7480-1458","https://orcid.org/0000-0002-8700-9002","https://orcid.org/0000-0001-9901-2658"],"authorRor":["https://ror.org/053fq8t95","https://ror.org/03zmjc935"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)","OUT","PRT5","S3D","SF","BND","GBND","Q","SMV","SZ","TXT"],"description":"This dataset contains outputs of wildfire simulations in Fire Dynamics Simulator (FDS) in forest environments. It includes three simulations, each representing different simulation parameters. The forest plot used for the simulations consists of a 40 x 40 m Pinus ponderosa plot scanned with a Riegl-VZ400i in Sycan Marsh, Oregon, USA, during the summer of 2019. The inputs of the simulations are available at Cabo et al., 2025 https://doi.org/10.5285/467a735f-b03c-4c30-8781-82f0e11aec28 . These simulations serve as an example on how ground-based LiDAR data can be used to run 3D-spatially explicit wildfire simulations.\n\nThe dataset includes CSV files containing the numeric results of the simulations; OUT, TXT, and INI files containing the specifications of the simulation (software version, date, number of threads, simulation domain, units, etc.); and FDS-specific output files which contain data related to the simulation paramaters : .PRT5 (Part 5 / Particle Files), .S3D(3D Smoke Files), .SF (Slice Files), .BND (Boundary Files), .GBND (Gas/Global Boundary Files), .Q (Plot3D Files), .smv (Smokeview Files), and .SZ (Smokeview Sizing Files).","documentType":"GEMINI_DOCUMENT","familyName":["Laino","Cabo","Parsons","Hudak","Doerr","Santin"],"fullName":["Diego Laino","Laino, D.","Cabo, C.","Parsons, R.A.","Hudak, A.T.","Doerr, S.","Santin, C."],"funder":["Natural Environment Research Council"],"givenName":["D.","C.","R.A.","A.T.","S"],"grant":["NE/T001194/1"],"identifier":"f9180989-6528-404e-8110-e3dcc205a6a1","incomingCitationCount":0,"keyword":["Environmental risk","Modelling","Climate and climate change","wildfire","forestry","computational fluid dynamics models","FDS","LiDAR"],"keywordsOther":["wildfire","forestry","computational fluid dynamics models","FDS","LiDAR"],"keywordsTheme":["Environmental risk","Modelling","Climate and climate change"],"licence":"Open government licence","lineage":"One 40x40 m2 plot point cloud was manually labelled into the different fuel layers present in the scene, Each point was labelled into either \"ground\", \"understorey\", \"stem\" or \"canopy\". Each layer was then voxelized at 20 cm for simulations 1 and 2 and 10 cm for simulation 3, and each voxel was assigned a layer-specific averaged bulk density value. Then the voxels were converted into Fire Dynamics Simulator (FDS) BDF input files.\n\nFire Dynamics Simulator (FDS) 6.9.1 was used to run three wildfire simulations. Simulations 1 and 2 were run using 9 MPI processes and took approximately 25 min, whereas simulation 3 was run using 16 and took approximately 68.16 h.\n\nThe simulations were run in April-May 2024 on an MSI laptop equipped with a 13th-generation Intel Core i9-13980HX processor (2.20 GHz) and an NVIDIA RTX 3500 Ada Generation Laptop GPU (12 GB VRAM).","locations":["POLYGON((-121.169 42.84, -121.169 42.857, -121.153 42.857, -121.153 42.84, -121.169 42.84))"],"metadataDate":"2026-07-02T16:12:37.000Z","orcid":["https://orcid.org/0000-0002-7106-0559","https://orcid.org/0000-0002-0387-9052","https://orcid.org/0000-0001-5091-8993","https://orcid.org/0000-0001-7480-1458","https://orcid.org/0000-0002-8700-9002","https://orcid.org/0000-0001-9901-2658"],"organisation":["Swansea University","US Forest Service","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-07-02T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f9180989-6528-404e-8110-e3dcc205a6a1","10.5285/f9180989-6528-404e-8110-e3dcc205a6a1","doi:10.5285/f9180989-6528-404e-8110-e3dcc205a6a1"],"resourceType":"Dataset","rightsHolder":["Swansea University"],"ror":["https://ror.org/053fq8t95","https://ror.org/03zmjc935","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains outputs of wildfire simulations in Fire Dynamics Simulator (FDS) in forest environments. It includes three simulations, each representing different simulation parameters. The forest plot used for the simulations consists of a 40 x 40 m Pinus ponderosa…","state":"published","supplementalDescription":["These files can be viewed on the free software Smokeview, a specialized visualization and analysis tool for FDS output."],"title":"Wildfire simulation outputs from Fire Dynamics Simulator (FDS) using real-world fuel data from forest plots, Oregon, USA, 2019","topic":["0/Environmental risk/","0/Modelling/","0/Climate and climate change/"],"version":1.0,"view":["public","glenn"]},{"authorAffiliation":["Cardiff University","Imperial College London"],"authorFamilyName":["Durance","Feeley","Perkins","Pye","Gutierrez-Canovas","Ormerod","Woodward"],"authorFullName":["Durance, I.","Feeley, H.B.","Perkins, D.M.","Pye, M.C.","Gutierrez-Canovas, C.","Ormerod, S.J.","Woodward, G."],"authorGivenName":["I.","H.B.","D.M.","M.C.","C.","S.J.","G."],"authorOrcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0003-0386-0586","https://orcid.org/0000-0002-6785-4049","https://orcid.org/0000-0002-8174-302X"],"authorRor":["https://ror.org/03kk7td41","https://ror.org/041kmwe10"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"These data are leaf litter decomposition rate in eight Welsh upland rivers with contrasting land-use, moorland and exotic conifer, in response to riparian deciduous leaf addition. Eight sampling reaches were chosen at two sites, Llyn Brianne (4 reaches) and Plynlimon (4 reaches). The experiment consisted of adding deciduous leaves to half of the reaches whilst the other half were maintained as a control (no addition of deciduous leaves). To characterise the leaf litter decomposition of the studied streams, onion bags were placed during November 2012, and then collected during January 2013 (before deciduous leaf addition) and March 2013 (after deciduous leaf addition) in each sampling reach. \n\nThe main goal of this survey was to examine how aquatic biodiversity and litter decomposition respond to leaf addition in moorland and conifer forested rivers. Dr Isabelle Durance was responsible for organising the surveys, Dr Hugh Feeley, Dr Dan Perkins and Marian Pye were in charge of collecting, processing and sorting the samples. The work was carried out under Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) project (Grant reference NERC NE/J014818/1). DURESS was a project funded by the Natural Environment Research Council (NERC) Biodiversity and Ecosystem Service Sustainability (BESS) programme. \n","documentType":"GEMINI_DOCUMENT","familyName":["Durance","Feeley","Perkins","Pye","Gutierrez-Canovas","Ormerod","Woodward"],"fullName":["Durance, I.","Feeley, H.B.","Perkins, D.M.","Pye, M.C.","Gutierrez-Canovas, C.","Ormerod, S.J.","Woodward, G."],"funder":["Natural Environment Research Council"],"givenName":["Isabelle","I.","H.B.","D.M.","M.C.","C.","S.J.","G."],"grant":["NE/J014818/1"],"identifier":"c121f915-6f64-4b74-aa24-cd70708a29d2","incomingCitationCount":0,"keyword":["Wales","Plynlimon","Llyn Brianne","diversity","leaf litter decomposition","decomposition","land use","ecosystem services"],"keywordsOther":["diversity","leaf litter decomposition","decomposition","land use","ecosystem services"],"keywordsPlace":["Wales","Plynlimon","Llyn Brianne"],"licence":"Open government licence","lineage":"Each stream was divided into an upstream control zone and a downstream experimental zone. Samples of leafs were collected on each sampling occasion. Deciduous leaves were added directly to the stream and by fixing 'Onion bags' of leaves the stream bed and bank. Samples were collected two occasions, January (3-16/01/2013), and March (11-14/03/2013) in all the streams in both the upstream reference zones and downstream experimental zones. \n\nIn early November 2012, 48 replicate litter bags (24 per reference zone and 24 per experimental zone) of two mesh types, fine and course filled with air dried deciduous leaves were secured in pairs to randomly distributed metal poles each of the study streams. The mesh bags were then covered with cobbles to facilitate biological colonisation. At the end of the 'before' treatment half the litter bags or 6 fine and 6 coarse mesh litter bags were removed gently from both the reference and experimental study zones within each stream. At the same time 6 new fine mesh and 6 new coarse mesh litter bags were added to each pole to measure the decomposition during the 'after' manipulation period. These bags were left until the end the experimental period. At this point all of the remaining litter bags were removed. \n\nDirectly upon collection, all litter bags were preserved in 70 per cent ethanol on site, within individual clear polystyrene bags, marked with an identifying code and transported back to the laboratory for processing. Once in the laboratory the leaf material from each litter bag was rinsed carefully under tap water under a fine sieve and air dried at room temperature. All macroinvertebrates were separated from the contents of each litter bag.\n\nData was exported to a comma separated values files for ingestion into the Environmental Information Data Centre (EIDC).","locations":["POLYGON((-3.785 52.107, -3.785 52.518, -3.641 52.518, -3.641 52.107, -3.785 52.107))"],"metadataDate":"2026-06-29T16:58:28.000Z","orcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0003-0386-0586","https://orcid.org/0000-0002-6785-4049","https://orcid.org/0000-0002-8174-302X"],"organisation":["Cardiff University","Imperial College London","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2017-04-19T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c121f915-6f64-4b74-aa24-cd70708a29d2","10.5285/c121f915-6f64-4b74-aa24-cd70708a29d2","doi:10.5285/c121f915-6f64-4b74-aa24-cd70708a29d2"],"resourceType":"Dataset","ror":["https://ror.org/03kk7td41","https://ror.org/041kmwe10","https://ror.org/04xw4m193"],"shortenedDescription":"These data are leaf litter decomposition rate in eight Welsh upland rivers with contrasting land-use, moorland and exotic conifer, in response to riparian deciduous leaf addition. Eight sampling reaches were chosen at two sites, Llyn Brianne (4 reaches) and Plynlimon…","state":"published","title":"Leaf litter decomposition in Welsh upland rivers in response to organic matter addition (2012 - 2013)","version":1.0,"view":["public","danor"]},{"authorAffiliation":["University of St. Andrews"],"authorFamilyName":["Smeaton","Miller","Austin"],"authorFullName":["Smeaton, C.","Miller, L.C.","Austin, W.E.N."],"authorGivenName":["C.","L.C.","W.E.N."],"authorOrcid":["https://orcid.org/0000-0003-4535-2555","https://orcid.org/0000-0003-2876-4312","https://orcid.org/0000-0001-6544-3468"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"The dataset details the quantification of three different pools of organic matter (labile, recalcitrant, and refractory) within 1211 down core soil samples collect from across UK saltmarsh sites between 2018 - 2021. Additionally, the dataset presents a measure of organic matter reactivity using the carbon reactivity index (CRI).\n\nThe work was carried out under the NERC programme - Carbon Storage in Intertidal Environment (C-SIDE), NERC grant reference NE/R010846/1","documentType":"GEMINI_DOCUMENT","familyName":["Smeaton","Miller","Austin"],"fullName":["Smeaton, C.","Miller, L.C.","Austin, W.E.N."],"funder":["Natural Environment Research Council"],"givenName":["C.","L.C.","W.E.N."],"grant":["NE/R010846/1"],"identifier":"9a62bb8a-dd88-42d2-9af2-25ec338110e6","incomingCitationCount":0,"keyword":["UK","Scotland","Wales","England","C-SIDE","Carbon Storage in Intertidal Environments","Soil","Reactivity","Labile","Recalcitrant","LOI","soil texture","soil","sediment","salt marsh","organic matter","organic carbon","loss on ignition","intertidal zone","carbon","blue carbon","bulk density","wetland","coastal area","citizen science"],"keywordsOther":["Reactivity","Labile","Recalcitrant","LOI","soil texture","soil","sediment","salt marsh","organic matter","organic carbon","loss on ignition","intertidal zone","carbon","blue carbon","bulk density","wetland","coastal area","citizen science"],"keywordsPlace":["UK","Scotland","Wales","England"],"keywordsProject":["C-SIDE","Carbon Storage in Intertidal Environments"],"keywordsTheme":["Soil"],"licence":"Open government licence","lineage":"Across UK saltmarshes wide diameter (60mm) soil cores were collected. The location of each coring site was recorded using Differential Global Positioning System (DGPS). Prior to analysis the samples were stored at 4 degrees Celsius at the University of St Andrews. Upon return to the laboratory the cores were described following the Troels-Smith scheme. The cores were sub-sampled at 1cm intervals resulting in 1221 samples. Thermogravimetric analysis was undertaken using standard analytical procedures (detailed in the supporting documentation). All laboratory equipment were calibrated in accordance with the laboratory practises at the University of St Andrews. Results were recorded on to lab sheets and transferred into an Excel file. Results were exported as comma separated value (.csv) files for ingestion into the EIDC.","locations":["POLYGON((-8.02 49.844, -8.02 60.974, 2.177 60.974, 2.177 49.844, -8.02 49.844))"],"metadataDate":"2026-06-29T18:21:16.000Z","orcid":["https://orcid.org/0000-0003-4535-2555","https://orcid.org/0000-0003-2876-4312","https://orcid.org/0000-0001-6544-3468"],"organisation":["University of St. Andrews","NERC EDS Environmental Information Data Centre","The University Court of the University of St Andrews"],"publicationDate":"2023-07-19T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9a62bb8a-dd88-42d2-9af2-25ec338110e6","10.5285/9a62bb8a-dd88-42d2-9af2-25ec338110e6","doi:10.5285/9a62bb8a-dd88-42d2-9af2-25ec338110e6"],"resourceType":"Dataset","rightsHolder":["The University Court of the University of St Andrews"],"ror":["https://ror.org/04xw4m193"],"shortenedDescription":"The dataset details the quantification of three different pools of organic matter (labile, recalcitrant, and refractory) within 1211 down core soil samples collect from across UK saltmarsh sites between 2018 - 2021. Additionally, the dataset presents a measure of organic…","state":"published","title":"Labile, recalcitrant, and refractory organic matter in soil samples from UK saltmarshes collected between 2018 and 2021","topic":["0/Soil/"],"version":1.0,"view":["public","tinzha"]}],"rows":20,"url":"http://catalogue.ceh.ac.uk:443/eidc/documents?page=5&facet=funder%7C(The%20Saiga%20Conservation%20Alliance,%20UK%20OR%20Natural%20Environment%20Research%20Council)"}