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Hutton Institute","2RSPB Centre for Conservation Science","Royal Botanic Garden Edinburgh","Bryophyte Consultant"],"authorFamilyName":["Mitchell","Albon","Bellamy","Ellis","Hodgetts","Johnstone","Stockan","Taylor"],"authorFullName":["Mitchell, R.J.","Albon, S.D.","Bellamy, P.E.","Ellis, C.J.","Hodgetts, N.G.","Johnstone, C.","Stockan, J.A.","Taylor, A.F.S."],"authorGivenName":["R.J.","S.D.","P.E.","C.J.","N.G.","C.","J.A.","A.F.S."],"authorOrcid":["https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0002-0811-1333","https://orcid.org/0000-0003-2234-2119","https://orcid.org/0000-0003-1916-8746","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-0727-8171"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This is a database of all known birds, bryophytes, fungi, invertebrates, lichens and mammals that use Scots Pine (Pinus sylvestris) in the UK. Scots pine is the UK’s only native conifer that is used commercially and is the most common tree in the UK’s native Caledonian pine woods.  In total 1589 species are listed in the database. For each species a level of association with Scots pine is provided, ranging from obligate (only found on Scots pine) to cosmopolitan (found on a wide range of other tree species). Data on the ecology of each Scots pine associated species were collated: part of tree used, and use made of tree (feeding, roosting, breeding). Data on use or otherwise of 34 other tree species were also collated for each of the 1589 species.  ","documentType":"GEMINI_DOCUMENT","familyName":["Mitchell","Albon","Bellamy","Ellis","Hodgetts","Johnstone","Stockan","Taylor"],"fullName":["Mitchell, R.J.","Albon, S.D.","Bellamy, P.E.","Ellis, C.J.","Hodgetts, N.G.","Johnstone, C.","Stockan, J.A.","Taylor, A.F.S."],"funder":["Natural Environment Research Council"],"givenName":["R.J.","S.D.","P.E.","C.J.","N.G.","C.","J.A.","A.F.S."],"grant":["NE/X004449/1"],"identifier":"97f8c19b-7451-4809-b011-0f9cf3eb8430","incomingCitationCount":0,"keyword":["UK","Biodiversity"],"keywordsPlace":["UK"],"keywordsTheme":["Biodiversity"],"licence":"Open government licence","lineage":"Existing data sources were collated during 2023/24, in order to identify as comprehensively as possible those species that use Scots Pine, Pinus sylvestris (Scots pine-associated species) and the nature of this association in the UK. The data sources included quality controlled databases of records of species, peer reviewed literature, published books and grey literature. A complete list of data sources used is provided together with an assessment of the quality of that data: peer reviewed or quality controlled dataset versus grey literature and whether the data are from the UK or not. Information on the species ecology and their use of 34 other tree species was also collated. The data were collated in a pre-defined standard format to enable consistency across taxa.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"metadataDate":"2026-06-29T16:12:14.000Z","orcid":["https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0002-0811-1333","https://orcid.org/0000-0003-2234-2119","https://orcid.org/0000-0003-1916-8746","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-0727-8171"],"organisation":["James Hutton Institute","2RSPB Centre for Conservation Science","Royal Botanic Garden Edinburgh","Bryophyte Consultant","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-01-20T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/97f8c19b-7451-4809-b011-0f9cf3eb8430","10.5285/97f8c19b-7451-4809-b011-0f9cf3eb8430","doi:10.5285/97f8c19b-7451-4809-b011-0f9cf3eb8430"],"resourceType":"Dataset","rightsHolder":["James Hutton Institute"],"ror":["https://ror.org/04xw4m193"],"shortenedDescription":"This is a database of all known birds, bryophytes, fungi, invertebrates, lichens and mammals that use Scots Pine (Pinus sylvestris) in the UK. Scots pine is the UK’s only native conifer that is used commercially and is the most common tree in the UK’s native Caledonian…","state":"published","title":"Scots pine-associated biodiversity in the UK (Scots pine Ecol)","topic":["0/Biodiversity/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","Forest Research","University of Edinburgh","UK Centre for Ecology and Hydrology"],"authorFamilyName":["Baker","Cottrell","Ennos","Perry","Cavers"],"authorFullName":["Baker, J.","Cottrell, J.","Ennos, R.","Perry, A.","Cavers, S."],"authorGivenName":["James","Joan","Richard","Annika","Stephen"],"authorRor":["https://ror.org/00pggkr55"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)","R"],"description":"These data comprise 12 different measurements, including single traits (e.g. needle length) as well as repeated, yearly phenology measurements over time (autumn 2022 to summer 2025) from a common garden trial of juniper trees planted in Cardrona, the Scottish Borders. Seeds from 16 natural juniper populations were germinated, and seedlings were raised in a glasshouse at the UKCEH, Edinburgh, then planted in the field in August 2022. The field site is a seminatural research site owned by Forestry and Land Scotland and managed by Forest Research. It occupies a hillside at approximately 350 metres of elevation and with a west-southwest aspect, and grazing is controlled by deer fences and culls. \nThis deposit also includes R scripts that can be used for transformations and analyses of the data, including univariate and multivariate analyses of quantitative data and correlating these measurements with climate variables (downloaded for each source population location from the CHELSA database).\nThese plants were part of a PhD project conducted to evaluate the standing genetic diversity and adaptive capability of natural populations.","documentType":"GEMINI_DOCUMENT","familyName":["Baker","Cottrell","Ennos","Perry","Cavers"],"fullName":["Baker, J.","Cottrell, J.","Ennos, R.","Perry, A.","Cavers, S."],"funder":["Natural Environment Research Council","Scottish Forestry Trust","Scottish Research","The Botanist Foundation"],"givenName":["James","Joan","Richard","Annika","Stephen","J."],"grant":["NE/V019813/1"],"identifier":"6952cab2-35be-494f-9253-5873e7fa7f74","incomingCitationCount":0,"keyword":["Biodiversity","Evolutionary ecology","Phenology","Common juniper tree","Juniperus communs","Common garden trial","Quantitative genetics"],"keywordsOther":["Common juniper tree","Juniperus communs","Common garden trial","Phenology","Quantitative genetics","Evolutionary ecology"],"keywordsTheme":["Biodiversity","Evolutionary ecology","Phenology"],"licence":"Open government licence","lineage":"These data were recorded in the field by the depositor with the exception of the 2022 bud burst phenology data, which was recorded in the glasshouse prior to transplantation at the field site. The data included in this submission are the raw measurements, and the included R scripts include all processing and analytical steps for quantitative and phenological data. \n\nThe Chlorophyll fluorescence data was pre-processed by hand, using field notes to remove erroneous scans and match scans to the appropriate plants due to the nature of data recording and the need for proprietary software (\"Hansatech\") to access the raw data.","locations":["POLYGON((-3.185 55.591, -3.185 55.639, -3.108 55.639, -3.108 55.591, -3.185 55.591))"],"metadataDate":"2026-06-29T16:50:47.000Z","organisation":["UK Centre for Ecology & Hydrology","Forest Research","University of Edinburgh","UK Centre for Ecology and Hydrology","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-02-05T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/6952cab2-35be-494f-9253-5873e7fa7f74","10.5285/6952cab2-35be-494f-9253-5873e7fa7f74","doi:10.5285/6952cab2-35be-494f-9253-5873e7fa7f74"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"shortenedDescription":"These data comprise 12 different measurements, including single traits (e.g. needle length) as well as repeated, yearly phenology measurements over time (autumn 2022 to summer 2025) from a common garden trial of juniper trees planted in Cardrona, the Scottish Borders.…","state":"published","title":"Quantitative genetics of common juniper trees in a common garden trial in Cardrona, Scotland, 2022-2025","topic":["0/Biodiversity/","0/Evolutionary ecology/","0/Phenology/"],"version":1.0,"view":["public","glenn"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute"],"authorFamilyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"authorFullName":["Barwell, L.J.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"authorGivenName":["L. J.","K.","G.","F.","D. E. L.","R.","B. V."],"authorOrcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127"],"availability":"Available","catalogue":"eidc","dataFormat":["TIFF","GeoPackage"],"description":"This dataset maps the risks of Phytophthora pluvialis infection for 11098 forest fragments in Scotland identified as containing the known hosts Douglas fir or western hemlock. Key risk factors and their scoring were agreed with 15 cross-sectoral stakeholders through a self-completion survey and two workshops. Fragment risk scores integrate climate suitability and proximity to other fragments/infected sites, recent planting of these hosts (forestry grant schemes), inspected premises and water courses. Infections of P. pluvialis have been reported on Douglas fir and Western hemlock in Cornwall, Devon, Cumbria, Wales and Scotland since the outbreak was first detected in 2021. Outside of the UK, pine species (Pinus radiata, P. strobus, P. patula) are also susceptible to the pathogen. The scored fragment data were intersected with the boundaries of conservancies, local authorities and active P. pluvialis demarcated areas to summarise the distribution of risks across regions in Scotland.  ","documentType":"GEMINI_DOCUMENT","familyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"fullName":["Louise Barwell","Barwell, L.J.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"funder":["Natural Environment Research Council","Scotland's Plant Health Centre","Department for Environment Food and Rural Affairs"],"givenName":["L. J.","K.","G.","F.","D. E. L.","R.","B. V."],"grant":["NE/V019813/1","PHC2023/02","TH12224FR10"],"identifier":"921fcc2e-7491-4058-a21b-3d1de0be1507","incomingCitationCount":0,"keyword":["Scotland","Environmental risk","exotic species","forestry","habitat","pathogenic organism","pest","phytopathology","risk assessment","western hemlock","Phytophthora pluvialis","Pseudotsuga menziesii","Tsuga heterophylla","Douglas fir"],"keywordsOther":["exotic species","forestry","habitat","pathogenic organism","pest","phytopathology","risk assessment","western hemlock","Phytophthora pluvialis","Pseudotsuga menziesii","Tsuga heterophylla","Douglas fir"],"keywordsPlace":["Scotland"],"keywordsTheme":["Environmental risk"],"licence":"Open government licence","lineage":"We employed an iterative and collaborative co-production process that brought together stakeholders with diverse expertise from across Scotland’s plant health sector including forestry, conservation, horticulture, and government agencies. The distributions of Douglas fir and western hemlock fragments in Scotland were mapped using the National Forest Estate Subcompartments 2019 and the Native Woodland Survey of Scotland. This was supplemented with Scottish Forestry Phytophthora surveillance data and Statutory Plant Health Notices (SPHNs) since 2013 and detections on Douglas fir or western hemlock in a global Phytophthora database. Felled areas since 2013 were removed using the National Forest Inventory. Key risk factors and their scoring were agreed with 15 cross-sectoral stakeholders through a self-completion survey and two workshops. The consensus among workshop participants was for climate suitability to be the primary risk factor. The final report was peer reviewed by the Plant Health Centre. In addition, a knowledge integration and validation workshop (November 13, 2024) examined the adequacy of the outputs for horizon scanning and decision-making across sectors. Validation of the climate suitability models for other Phytophthora species has been attempted using independent UK and European detections.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T17:05:21.000Z","orcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-10-22T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/921fcc2e-7491-4058-a21b-3d1de0be1507","10.5285/921fcc2e-7491-4058-a21b-3d1de0be1507","doi:10.5285/921fcc2e-7491-4058-a21b-3d1de0be1507"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset maps the risks of Phytophthora pluvialis infection for 11098 forest fragments in Scotland identified as containing the known hosts Douglas fir or western hemlock. Key risk factors and their scoring were agreed with 15 cross-sectoral stakeholders through…","state":"published","title":"Spatial risk analysis for Phytophthora pluvialis infection of Douglas fir and western hemlock in Scotland","topic":["0/Environmental risk/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["University of Edinburgh","UK Centre for Ecology & Hydrology"],"authorFamilyName":["Shortman","Perry","Cavers"],"authorFullName":["Shortman, J.","Perry, A.","Cavers, S."],"authorGivenName":["J.","A. ","S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/01nrxwf90","https://ror.org/00pggkr55"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains phenotypic data on Scots pine cones and seeds sampled from individual trees in a long-term common garden trial. For each tree, overall cone counts were conducted and five cones were sampled in February 2024. Seventeen phenotypic traits were measured for each cone between June and July 2024. Traits include cone length, cone width, cone dry weight, scale length, scale width, scale count, stalk length, profile and colour, seed number and mean seed weight. ","documentType":"GEMINI_DOCUMENT","familyName":["Shortman","Perry","Cavers"],"fullName":["Shortman, J.","Perry, A.","Cavers, S."],"funder":["Natural Environment Research Council"],"givenName":["J.","A. ","S."],"grant":["NE/V019813/1"],"identifier":"b98e92cf-6ff5-42e2-8053-021ea04db01c","incomingCitationCount":0,"keyword":["Scotland","Phenology","genetic variation","Caledonian pinewood","common garden experiment","phenotype","Pinus sylvestris","reproductive traits","Scots pine"],"keywordsOther":["genetic variation","Caledonian pinewood","common garden experiment","phenotype","Pinus sylvestris","reproductive traits","Scots pine"],"keywordsPlace":["Scotland"],"keywordsTheme":["Phenology"],"licence":"Open government licence","lineage":"A long-term common garden trial was established in 2012 at Yair (latitude 55.603625, longitude -2.893025), using five-year-old saplings. It contains trees from 8 families (where a family comprises individuals grown from seed sampled from a single common tree) from each of 21 Scottish pinewoods and is arranged into four complete randomised blocks (see supporting document for reference). \n\nOver four days in February 2024, cone number was measured as a count of all visible cones on the south-facing side of each tree. Then, five cones were sampled from each tree for trait measurement. Cone length, cone width, cone dry weight, scale length, scale width, scale count, stalk length, profile, colour, seed number and mean seed weight were all recorded for every cone. Cone ratio (cone width / length) and seed viability (number of filled seeds / number of empty seeds) were also recorded. ","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T16:37:23.000Z","orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2139-9236"],"organisation":["University of Edinburgh","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-01-21T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b98e92cf-6ff5-42e2-8053-021ea04db01c","10.5285/b98e92cf-6ff5-42e2-8053-021ea04db01c","doi:10.5285/b98e92cf-6ff5-42e2-8053-021ea04db01c"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/01nrxwf90","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains phenotypic data on Scots pine cones and seeds sampled from individual trees in a long-term common garden trial. For each tree, overall cone counts were conducted and five cones were sampled in February 2024. Seventeen phenotypic traits were measured…","state":"published","title":"Long-term multisite Scots pine trial, Scotland: cone and seed phenotypes, 2024 ","topic":["0/Phenology/"],"version":1.0,"view":["public","katwri"]},{"authorAffiliation":["The James Hutton Institute","RSPB Centre for Conservation Science","Royal Botanic Garden Edinburgh","Bryophyte Consultant"],"authorFamilyName":["Mitchell","Albon","Bellamy","Ellis","Hodgetts","Johnstone","Stockan","Taylor"],"authorFullName":["Mitchell, R.J.","Albon, S.D.","Bellamy, P.E.","Ellis, C.J.","Hodgetts, N.G.","Johnstone, C.","Stockan, J.A.","Taylor, A.F.S."],"authorGivenName":["R.J.","S.D.","P.E.","C.J.","N.G.","C.","J.A.","A.F.S."],"authorOrcid":["https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0002-0811-1333","https://orcid.org/0000-0003-2234-2119","https://orcid.org/0000-0003-1916-8746","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-0727-8171"],"authorRor":["https://ror.org/03rzp5127","https://ror.org/0138va192","https://ror.org/0349vqz63"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"Here we collate a database of all known birds, bryophytes, fungi, invertebrates, lichens and mammals that use Sitka spruce (Picea sitchensis) in the UK. Sitka spruce is the most commonly planted commercial tree species in the UK. In total 564 species are listed in the database. For each species we provide a level of association with Sitka spruce, ranging from obligate (only found on Sitka spruce) to cosmopolitan (found on a wide range of other tree species). Data on the ecology of each Sitka spruce associated species were collated: part of tree used, and use made of tree (feeding, roosting, breeding). Data on use or otherwise of 34 other tree species were also collated for each of the 564 species. ","documentType":"GEMINI_DOCUMENT","familyName":["Mitchell","Albon","Bellamy","Ellis","Hodgetts","Johnstone","Stockan","Taylor"],"fullName":["Mitchell, R.J.","Albon, S.D.","Bellamy, P.E.","Ellis, C.J.","Hodgetts, N.G.","Johnstone, C.","Stockan, J.A.","Taylor, A.F.S."],"funder":["Natural Environment Research Council","UK Research and Innovation"],"givenName":["R.J.","S.D.","P.E.","C.J.","N.G.","C.","J.A.","A.F.S."],"grant":["NE/X004449/1"],"identifier":"1ce52c10-e3ab-4996-b9b7-052c70b3c1ba","incomingCitationCount":0,"keyword":["biodiversity","commercial forest","Picea sitchensis","forest plantation","Sitka spruce","species","forestry"],"keywordsOther":["biodiversity","commercial forest","Picea sitchensis","forest plantation","Sitka spruce","species","forestry"],"licence":"Open government licence","lineage":"Existing data sources were collated during 2023/24, in order to identify as comprehensively as possible those species that use Sitka spruce, Picea sitchensis (Sitka spruce-associated species) and the nature of this association in the UK. The data sources included quality controlled databases of records of species, peer reviewed literature, published books and grey literature. A complete list of data sources used is provided together with an assessment of the quality of that data: peer reviewed or quality controlled dataset versus grey literature and whether the data are from the UK or not. Information on the species ecology and their use of 34 other tree species was also collated. The data were collated in a pre-defined standard format to enable consistency across taxa.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"metadataDate":"2026-06-29T17:21:32.000Z","orcid":["https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0002-0811-1333","https://orcid.org/0000-0003-2234-2119","https://orcid.org/0000-0003-1916-8746","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-0727-8171"],"organisation":["The James Hutton Institute","RSPB Centre for Conservation Science","Royal Botanic Garden Edinburgh","Bryophyte Consultant","NERC EDS Environmental Information Data Centre"],"publicationDate":"2024-12-16T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1ce52c10-e3ab-4996-b9b7-052c70b3c1ba","10.5285/1ce52c10-e3ab-4996-b9b7-052c70b3c1ba","doi:10.5285/1ce52c10-e3ab-4996-b9b7-052c70b3c1ba"],"resourceType":"Dataset","rightsHolder":["The James Hutton Institute"],"ror":["https://ror.org/03rzp5127","https://ror.org/0138va192","https://ror.org/0349vqz63","https://ror.org/04xw4m193"],"shortenedDescription":"Here we collate a database of all known birds, bryophytes, fungi, invertebrates, lichens and mammals that use Sitka spruce (Picea sitchensis) in the UK. Sitka spruce is the most commonly planted commercial tree species in the UK. In total 564 species are listed in the…","state":"published","title":"Sitka spruce-associated biodiversity in the UK (Sitka spruce Ecol)","version":1.0,"view":["public","elsdhi"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","Forest Research","University of Edinburgh"],"authorFamilyName":["Baker","Cottrell","Ennos","Perry","Cavers"],"authorFullName":["Baker, J.","Cottrell, J.","Ennos, R.","Perry, A.","Cavers, S."],"authorGivenName":["James","Joan","Richard","Annika","Stephen"],"authorOrcid":["https://orcid.org/0009-0003-0514-4644"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03wcc3744","https://ror.org/01nrxwf90"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"These data describe the rates of filled, viable and germinating seeds from over 60 maternal juniper trees from across the UK. 12 populations from the Scottish Highlands to Southern English Downs were sampled in Fall 2023. Four different methods of seed viability testing were applied, and germination was monitored for over a year in response to nine different combinations of pretreatments and stratifications. Reproducible analyses and visualizations from an associated study are provided with an R project. This trial was conducted to determine the optimal treatment for juniper stratification and to quantify the variability in seedlot quality/viability among populations.","documentType":"GEMINI_DOCUMENT","familyName":["Baker","Cottrell","Ennos","Perry","Cavers"],"fullName":["James Baker","Baker, J.","Cottrell, J.","Ennos, R.","Perry, A.","Cavers, S."],"funder":["Forest Research","Scottish Forestry Trust","The Botanist Foundation","UK Centre for Ecology & Hydrology","Natural Environment Research Council"],"givenName":["James","Joan","Richard","Annika","Stephen"],"grant":["NE/V019813/1"],"identifier":"64607f86-0228-4a03-9d87-6e36435028a1","incomingCitationCount":0,"keyword":["Evolutionary ecology","germination","stratification","Common Juniper","seed (biology)","plant population","conservation","conservation of species","forest conservation","forest biodiversity"],"keywordsOther":["germination","stratification","Common Juniper","seed (biology)","plant population","conservation","conservation of species","forest conservation","forest biodiversity"],"keywordsTheme":["Evolutionary ecology"],"licence":"Open government licence","lineage":"Berries were collected from populations in fall 2023, weighed, and inspected for parasitism. Seeds were extracted with a food processor; filled and empty seeds were separated using the float test, then surface sanitized and dried. Dried seeds were weighed  and stored at 4 degrees C until used. Seeds were then treated with  one of two different pretreatments, consisting of soaking them in water or a 1% Citric Acid solution for 48 hours. A Control group was also included that was not pretreated. Next, seeds were subject to one of 4 different thermal stratification treatments: A warm stratification followed by a cold stratification; just a warm stratification; just a cold stratification; and a control without a stratification treatment. Germination was then monitored for over a year, and the differences among seedlots, populations and regions of the UK were quantified. \nAdditional seedlot quality and seed viability data were also collected for all 60 seedlots included in the germination trial. The field cut test (the proportion of seeds that are visibly filled with healthy embryonic tissue when bisected), the estimated numbers of filled and empty seeds from the float test, tetrazolium chloride (TZ) staining and X-ray viability are each applied to each seedlot. These results are then compared and contrasted to evaluate their relative accuracy and precision.","locations":["POLYGON((-8.702 49.864, -8.702 59.445, 1.768 59.445, 1.768 49.864, -8.702 49.864))"],"metadataDate":"2026-06-29T16:04:52.000Z","orcid":["https://orcid.org/0009-0003-0514-4644"],"organisation":["UK Centre for Ecology & Hydrology","Forest Research","University of Edinburgh","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-09-25T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/64607f86-0228-4a03-9d87-6e36435028a1","10.5285/64607f86-0228-4a03-9d87-6e36435028a1","doi:10.5285/64607f86-0228-4a03-9d87-6e36435028a1"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03wcc3744","https://ror.org/01nrxwf90","https://ror.org/04xw4m193"],"shortenedDescription":"These data describe the rates of filled, viable and germinating seeds from over 60 maternal juniper trees from across the UK. 12 populations from the Scottish Highlands to Southern English Downs were sampled in Fall 2023. Four different methods of seed viability testing…","state":"published","title":"Seed traits, seed viability and germination rates of seeds collected from 12 natural Juniper (Juniperus communis) populations in the UK, 2023-2025","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","elsdhi"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute"],"authorFamilyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"authorFullName":["Barwell, L.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"authorGivenName":["L.","K.","G.","F.","D.E.L","R.","B.V"],"authorOrcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127"],"availability":"Available","catalogue":"eidc","dataFormat":["TIFF","GeoPackage"],"description":"This dataset scores the relative risks of Phytophthora x alni infection for 50034 fragments in Scotland identified as containing any of the three alder species susceptible to the pathogen (common alder, Italian alder and grey alder). Fragment risk scores integrate climate suitability (using pathogen-specific temperature-dependent growth curves and a relative humidity threshold), proximity to rivers/flooding, connectivity to other alder fragments via flood events and recent planting of alder under forestry grant schemes. Data and models used to score risk factors are variable in their time frames, but are broadly representative of the period from 2013 to 2023. Phytophthora disease of alder has been widespread in southern England since at least 1995 and became more prevalent in annual surveys between 1994 and 2003. It has been confirmed at several riparian sites in Scotland. P. x alni diseases are reported only from the alder genus.","documentType":"GEMINI_DOCUMENT","familyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"fullName":["Louise Barwell","Barwell, L.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"funder":["Natural Environment Research Council","Scotland's Plant Health Centre","Department for Environment Food and Rural Affairs"],"givenName":["L.","K.","G.","F.","D.E.L","R.","B.V"],"grant":["NE/V019813/1","PHC2023/02","TH12224FR10"],"identifier":"824f9ba8-7d1c-4a82-b5ec-a4f850f1d370","incomingCitationCount":0,"keyword":["Environmental risk","Environmental survey","biodiversity","exotic species","forest","forestry","habitat","pathogenic organism","pest","phytopathology","risk assessment","Scotland"],"keywordsOther":["biodiversity","exotic species","forest","forestry","habitat","pathogenic organism","pest","phytopathology","risk assessment","Scotland"],"keywordsTheme":["Environmental risk","Environmental survey"],"licence":"Open government licence","lineage":"We employed an iterative and collaborative co-production process that brought together stakeholders with diverse expertise from across Scotland's plant health sector representing forestry, conservation, horticulture, and government agencies through a semi-structured process of survey and workshops. Fragments containing alder species were extracted from the National Forest Estate Sub-compartments 2019, Native Woodland Survey of Scotland and global database of host-Phytophthora detections, removing any felled areas since 2013 using the National Forest Inventory. Key risk factors (climate suitability, proximity to rivers/flooding, connectivity to other alder fragments via flood events and recent planting of alder) and their scoring were agreed with 15 cross-sectoral stakeholders through a self-completion survey and two workshops. The final report was peer reviewed by the Plant Health Centre. In addition, a knowledge integration and validation workshop (November 13, 2024) examined the adequacy of the outputs for horizon scanning and decision-making across sectors. Validation of the climate suitability models has been attempted using independent UK and European detections of Phytophthora x alni.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T17:23:53.000Z","orcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-10-08T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/824f9ba8-7d1c-4a82-b5ec-a4f850f1d370","10.5285/824f9ba8-7d1c-4a82-b5ec-a4f850f1d370","doi:10.5285/824f9ba8-7d1c-4a82-b5ec-a4f850f1d370"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset scores the relative risks of Phytophthora x alni infection for 50034 fragments in Scotland identified as containing any of the three alder species susceptible to the pathogen (common alder, Italian alder and grey alder). Fragment risk scores integrate climate…","state":"published","title":"Spatial risk analysis for Phytophthora x alni infection of alder fragments in Scotland","topic":["0/Environmental risk/","0/Environmental survey/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","Forest Research","James Hutton Institute"],"authorFamilyName":["Perry","Baden","Beaton","Cottrell","Dickenmann","Donnelly","Lobo-Guerrero Villegas","Mullett","Nemeth","Stockan","Cavers"],"authorFullName":["Perry, A.","Baden, R.","Beaton, J.K.","Cottrell, J.E.","Dickenmann, L.","Donnelly, K.","Lobo-Guerrero Villegas, J.P.","Mullett, M.","Nemeth, K.","Stockan, J.A.","Cavers, S."],"authorGivenName":["Annika","Richard","Joan K","Joan E","Luisa","Kevin","Juan Pablo","Martin","Krisztian","Jenni A","Stephen"],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-7633-9113","https://orcid.org/0000-0002-6013-0347","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03wcc3744","https://ror.org/03rzp5127"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"The dataset contains disease survey data for Scots pine trees in a long-term progeny-provenance common garden trial planted in three sites in Scotland. Trees were originally collected from 21 provenances of native Caledonian pinewood from across the native range in Scotland. \n\nDisease surveys were performed annually between August and September from 2015 to 2025 (excluding 2019 and 2020) for one site (FS) and in 2016 and 2022 for two sites (FE and FW). Susceptibility to Dothistroma needle blight (DNB, caused by Dothistroma septosporum) for each tree was estimated by recording two traits: 'direct susceptibility' (estimated percentage of needles with lesions) and 'indirect susceptibility' (estimated years needle retention). Indirect susceptibility was recorded to ensure needle loss associated with susceptibility to DNB was also captured. In addition to annual measures of susceptibility, long-term susceptibility was also estimated for each tree.","documentType":"GEMINI_DOCUMENT","familyName":["Perry","Baden","Beaton","Cottrell","Dickenmann","Donnelly","Lobo-Guerrero Villegas","Mullett","Nemeth","Stockan","Cavers"],"fullName":["Annika Perry","Perry, A.","Baden, R.","Beaton, J.K.","Cottrell, J.E.","Dickenmann, L.","Donnelly, K.","Lobo-Guerrero Villegas, J.P.","Mullett, M.","Nemeth, K.","Stockan, J.A.","Cavers, S."],"funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Department for Environment Food and Rural Affairs"],"givenName":["Annika","Richard","Joan K","Joan E","Luisa","Kevin","Juan Pablo","Martin","Krisztian","Jenni A","Stephen"],"grant":["NE/V019813/1","BB/W020378/1","CFP2206"],"identifier":"c3b45aac-a497-4e57-9ee0-8cdd8677f5de","incomingCitationCount":0,"keyword":["Evolutionary ecology","Environmental survey","adaptive capacity","Caledonian pinewood","Common garden experiment","Tree health","Pinus sylvestris","Scots pine","Dothistroma needle blight","Dothistroma septosporum"],"keywordsOther":["adaptive capacity","Caledonian pinewood","Common garden experiment","Tree health","Pinus sylvestris","Scots pine","Dothistroma needle blight","Dothistroma septosporum"],"keywordsTheme":["Evolutionary ecology","Environmental survey"],"licence":"Open government licence","lineage":"Disease surveys were performed by visual observation. Recorders were experienced in detection and identification of symptoms of Dothistroma needle blight.\n\nAnnual direct susceptibility was recorded in 5% increments where 1% is equivalent to negligible symptoms. Annual indirect susceptibility was recorded in 0.5 year increments of needle retention, except for 2016 which was recorded in 0.25 year increments. \n\nFrom 2015 to 2017 (inclusive) a single value for each of direct and indirect susceptibility was recorded per tree. From 2018 to 2025 separate estimates were made for each trait for the top, middle and bottom of the crown for each tree and a mean value calculated per tree per year for each trait. \n\nFor the FS site (where nine annual surveys were conducted), long-term direct and indirect susceptibility were calculated using an Area Under the Disease Progress (AUDPS) approach. For the FE and FW sites (where two annual surveys were conducted), long-term direct and indirect susceptibility values for each tree were obtained from the mean value across the two surveys for each trait.","locations":["POLYGON((-6.064 55.473, -6.064 58.043, -1.999 58.043, -1.999 55.473, -6.064 55.473))"],"metadataDate":"2026-06-29T18:26:04.000Z","orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-7633-9113","https://orcid.org/0000-0002-6013-0347","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","Forest Research","James Hutton Institute","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-05-07T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c3b45aac-a497-4e57-9ee0-8cdd8677f5de","10.5285/c3b45aac-a497-4e57-9ee0-8cdd8677f5de","doi:10.5285/c3b45aac-a497-4e57-9ee0-8cdd8677f5de"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03wcc3744","https://ror.org/03rzp5127","https://ror.org/04xw4m193"],"shortenedDescription":"The dataset contains disease survey data for Scots pine trees in a long-term progeny-provenance common garden trial planted in three sites in Scotland. Trees were originally collected from 21 provenances of native Caledonian pinewood from across the native range in…","state":"published","title":"Long-term multisite Scots pine trial, Scotland: annual Dothistroma needle blight surveys, 2015-2025","topic":["0/Evolutionary ecology/","0/Environmental survey/"],"version":1.0,"view":["public","elsdhi"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute"],"authorFamilyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"authorFullName":["Barwell, L.J.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"authorGivenName":["L.J.","K.","G.","F.","D. E. L.","R.","B. V."],"authorOrcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127"],"availability":"Available","catalogue":"eidc","dataFormat":["TIFF","GeoPackage"],"description":"This dataset maps the risks of Phytophthora ramorum infection for 47587 fragments of Heather heathland (UKCEH Landcover Map class H9) and 74869 fragments of Heather grassland (UKCEH Landcover Map class H10). Fragment risk scores integrate climate suitability for P. ramorum (using pathogen-specific temperature-dependent growth curves and a relative humidity threshold), proximity to Larch/infected Larch within 500m or 5000m, proximity to other (non-Larch) wider environment infections within 1500m, habitat suitability within the fragment for sporulating hosts (Vaccinium myrtillus, V. vitis-idaea, Acrostaphylos uva-versi) and the reservoir host Rhododendron ponticum, proximity to inspected premises with confirmed infections and the presence of water courses. The maximum possible risk score for heathland fragments across all risk factors was 11.5, but in practice the maximum assigned for any fragment was 10.5 for Heather (H9) and 11 for Heather grassland (H10). Fragments were also classified as low, medium or high risk (overall_risk_as_range).","documentType":"GEMINI_DOCUMENT","familyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"fullName":["Louise Barwell","Barwell, L.J.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"funder":["Natural Environment Research Council","Scotland's Plant Health Centre","Department for Environment Food and Rural Affairs"],"givenName":["L.J.","K.","G.","F.","D. E. L.","R.","B. V."],"grant":["NE/V019813/1","PHC2023/02","TH12224FR10"],"identifier":"00601c2a-ac86-467d-8696-689cf20e35d3","incomingCitationCount":0,"keyword":["Scotland","Environmental risk","exotic species","habitat","pathogenic organism","pest","phytopathology","Phytophthora ramorum","risk assessment","heathland"],"keywordsOther":["exotic species","habitat","pathogenic organism","pest","phytopathology","Phytophthora ramorum","risk assessment","heathland"],"keywordsPlace":["Scotland"],"keywordsTheme":["Environmental risk"],"licence":"Open government licence","lineage":"We employed an iterative and collaborative co-production process that brought together stakeholders with diverse expertise from across Scotland’s plant health sector, including forestry, conservation, horticulture, and government agencies to co-design the risk framework. Heathland fragments in Scotland were identified using the Land Cover Map 2023 (land parcels, GB). Risks were scored separately for the two classes of heathland defined in the LCM. Heathland 9 relates to LCM Class ‘Heather’ (>25% cover Heather) and heathland 10 is Heather grassland (≤25% cover heather). Key risk factors for P. ramorum infection and their scoring were agreed with 15 cross-sectoral stakeholders through a self-completion survey and two workshops. The previous risk analysis for P. ramorum risks to heathland fragments has been updated to include new P. ramorum detection data in Larch woodlands and inspected premises provided by Scottish Forestry and SASA. New climate suitability models for P. ramorum growth are used. The risk scoring has been adjusted to reduce the emphasis on proximity to inspected premises as a pathway of spread, reflecting stakeholder perspectives on improved biosecurity practices in trade. The scored fragment data were intersected with the boundaries of local authorities, terrestrial protected areas, and P. ramorum policy zones to summarise the distribution of risks across regions in Scotland.\n\nThe final report was peer reviewed by the Plant Health Centre. In addition, a knowledge integration and validation workshop (November 13, 2024) examined the adequacy of the outputs for horizon scanning and decision-making across sectors. Validation of the climate suitability models for P. ramorum has been attempted using independent UK and European detections. This spatial risk framework cannot yet be fully validated until future detections are available, because previous detections are used within the model and are not independent of the risk scores assigned. Previous risk frameworks were cross-validated against subsequent, independent P. ramorum detections, as proof of concept.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T18:12:17.000Z","orcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-09-19T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/00601c2a-ac86-467d-8696-689cf20e35d3","10.5285/00601c2a-ac86-467d-8696-689cf20e35d3","doi:10.5285/00601c2a-ac86-467d-8696-689cf20e35d3"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset maps the risks of Phytophthora ramorum infection for 47587 fragments of Heather heathland (UKCEH Landcover Map class H9) and 74869 fragments of Heather grassland (UKCEH Landcover Map class H10). Fragment risk scores integrate climate suitability for P.…","state":"published","title":"Spatial risk analysis for Phytophthora ramorum infection in heathland fragments in Scotland","topic":["0/Environmental risk/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute"],"authorFamilyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"authorFullName":["Barwell, L.J.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"authorGivenName":["L.J.","K.","G.","F.","D.E.L.","R.","B.V."],"authorOrcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127"],"availability":"Available","catalogue":"eidc","dataFormat":["TIFF","GeoPackage"],"description":"This dataset maps the potential vulnerability to Phytophthora pinifolia infection for 82 core fragments of the Caledonian Pinewood Inventory (CPI) in Scotland. Fragment risk scores integrate climate suitability for pathogen growth, proximity to other pine fragments and inspected premises and recent planting under forestry grant schemes. Data and models used to assess risks are variable in their time frames, but are broadly representative of the period from 2013 to 2023. The risk maps for Caledonian Pine assess the vulnerability of CPI fragments, if P. pinifolia were to arrive, and the most probable areas of introduction and establishment. P. pinifolia has not been detected in the UK but is on the UK Plant Health Risk Register. All known host species are within the genus Pinus, either recorded as naturally occurring disease affecting the shoots and needles of Pinus radiata, or established through pathogenicity trials on other species within the genus, albeit with varying levels of susceptibility. The only known source region for the pathogen is Chile. P. pinifolia has been ranked 8th among Phytophthora species mostly likely to arrive among the 109 Phytophthora species assessed, with this higher risk predominantly driven by the model component describing climatic similarity between forest, agricultural and urban habitats in Chile and the UK. A Rapid Pest Risk Analysis for P. pinifolia considered it unlikely to enter the UK due to restrictions on import of living pine species from non-EU countries, though transport may still be possible with other, unknown, hosts.","documentType":"GEMINI_DOCUMENT","familyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"fullName":["Louise Barwell","Barwell, L.J.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"funder":["Natural Environment Research Council"],"givenName":["L.J.","K.","G.","F.","D.E.L.","R.","B.V."],"grant":["NE/V019813/1"],"identifier":"ddee75ae-2ad0-4d16-81a9-20928d89e872","incomingCitationCount":1,"keyword":["Scotland","Environmental risk","exotic species","forest pest","forestry","habitat","pathogenic organism","phytopathology","risk assessment"],"keywordsOther":["exotic species","forest pest","forestry","habitat","pathogenic organism","phytopathology","risk assessment"],"keywordsPlace":["Scotland"],"keywordsTheme":["Environmental risk"],"licence":"Open government licence","lineage":"We employed an iterative and collaborative co-production process that brought together stakeholders with diverse expertise from across Scotland's plant health sector including forestry, conservation, horticulture, and government agencies. Risk factors and their scoring were agreed with 15 cross-sectoral stakeholders through a self-completion survey and two workshops. Overall risk scores integrate climate suitability (using pathogen-specific temperature-dependent growth curves and relative humidity thresholds), with proximity to other pine fragments, inspected premises and planting under forestry grant schemes. As agreed in the first workshop, climate suitability was given the greatest weight in the scoring of the risk factors. Due to the absence of any P. pinifolia detections in the UK, the spatial risk frameworks exclude proximity to infected areas. The final report was peer reviewed by the Plant Health Centre. In addition, a knowledge integration and validation workshop (November 13, 2024) examined the adequacy of the outputs for horizon scanning and decision-making across sectors. Validation of pathogen-specific climate suitability models has been attempted for other Phytophthora species using independent UK and European detections, but is not possible for P. pinifolia as the pathogen has not been detected in Europe.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T17:26:41.000Z","orcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-10-22T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/ddee75ae-2ad0-4d16-81a9-20928d89e872","10.5285/ddee75ae-2ad0-4d16-81a9-20928d89e872","doi:10.5285/ddee75ae-2ad0-4d16-81a9-20928d89e872"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset maps the potential vulnerability to Phytophthora pinifolia infection for 82 core fragments of the Caledonian Pinewood Inventory (CPI) in Scotland. Fragment risk scores integrate climate suitability for pathogen growth, proximity to other pine fragments…","state":"published","title":"Spatial risk analysis for Phytophthora pinifolia infection of Caledonian Pinewood Inventory fragments in Scotland","topic":["0/Environmental risk/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute"],"authorFamilyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"authorFullName":["Barwell, L.J.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"authorGivenName":["L. J.","K.","G.","F.","D.E.L.","R.","B. V."],"authorOrcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127"],"availability":"Available","catalogue":"eidc","dataFormat":["TIFF"],"description":"This dataset is a ranked list of risks to Scotland from 196 Phytophthora species, including most of the approximately 240 formally described or provisionally named species in the genus globally. Arrival and establishment risks are scored and joined with information on surveillance of known hosts within inspected premises in Scotland (introduction risks). Potential impacts are scored using information on global Phytophthora-host interactions extracted from a global database of Phytophthora records to identify at risk hosts and score the level of threat to hosts and habitats within Scotland. The ranked list was developed to support prioritisation among future Phytophthora threats to Scotland. All risks were scored by the UKCEH project team, informed by a self-completion survey and two workshops with 15 stakeholders from across Scotland's plant health sector, including forestry, conservation, horticulture, and government agencies.","documentType":"GEMINI_DOCUMENT","familyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"fullName":["Louise Barwell","Barwell, L.J.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"funder":["Natural Environment Research Council","Scotland's Plant Health Centre","Department for Environment Food and Rural Affairs"],"givenName":["L.","L. J.","K.","G.","F.","D.E.L.","R.","B. V."],"grant":["NE/V019813/1","PHC2023/02","TH12224FR10"],"identifier":"72e8f817-01a6-42d2-b187-a5ebf43853a1","incomingCitationCount":1,"keyword":["Environmental risk","Scotland","pathogenic organism","pest","risk assessment","exotic species","environmental impact","forestry","habitat","biodiversity"],"keywordsOther":["Scotland","pathogenic organism","pest","risk assessment","exotic species","environmental impact","forestry","habitat","biodiversity"],"keywordsTheme":["Environmental risk"],"licence":"Open government licence","lineage":"To develop a ranked list of threats to Scotland from Phytophthora species we joined predictions from new models of probability of arrival into the UK through trade (Barwell et al. 2025), and current climate suitability for establishment in 342 pixels (approximately 15x15 km grid) in Scotland (Green et al. 2024). These were integrated with information on Phytophthora distributions, host associations and interceptions extracted from a global database of Phytophthora records. Potential impacts on Scotland's priority plants and habitats were assessed through scoring the number of susceptible host genera on Scotland's Biodiversity List, and within NVC habitats and National Forest Estate Subcompartments in Scotland.  Each risk metric was scored from 0 (low risk) to 3 (high risk) and these scores were summed to produce an overall risk score for each Phytophthora species. Some species are missing scores for climate suitability in Scotland  (n=37) or UK arrival risk (n=89) due to the absence of data on source regions or thermal tolerance traits to inform the underlying models. \n\nThe final report (L. J. Barwell, G. Amankwaa, F. Asaaga, K. Turvey, D. E. L. Cooke, R. Mitchell, & B. V. Purse (2025). Improved preparedness for Phytophthora prevention in Scotland: Project Final Report. PHC2023/02. Scotland's Centre of Expertise for Plant Health (PHC). https://www.planthealthcentre.scot/projects/improved-preparedness-Phytophthora-prevention-scotland) was peer-reviewed by Scotland’s Plant Health Centre. Underlying models of pathogen-specific climate suitability have been evaluated against independent detection data in the UK and Europe where available. Arrival risk models integrating trade flows from source regions and pathogen traits explained up to 78% (61.8, 84.6) of variance in the probability of a new detections since 2005 across Phytophthora species globally. Interceptions and host associations were derived from a global cross-sectoral database compiling information from multiple data providers and sectors to capture the broadest picture possible of Phytophthora host use and prevalence. Where possible, pathologists validated the records and rankings against their knowledge of pathogen behaviour. \n\nHowever, users of the list should be mindful that not all Phytophthora species are  included in the ranking presented here due to lack of knowledge on their distributions and hosts, and that a considerable proportion of global Phytophthora diversity may be unknown to science. Some of the most impactful Phytophthora species were only described after their emergence in regions that were likely outside of their native range and with unknown source regions. Moreover, quantitative metrics capturing the severity of interactions (e.g. pathogenicity) between Phytophthora species and their hosts are only available for a fraction of the host-pathogen interactions captured in our data and are not considered within the qualitative ranking presented here.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T17:12:01.000Z","orcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-09-19T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/72e8f817-01a6-42d2-b187-a5ebf43853a1","10.5285/72e8f817-01a6-42d2-b187-a5ebf43853a1","doi:10.5285/72e8f817-01a6-42d2-b187-a5ebf43853a1"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset is a ranked list of risks to Scotland from 196 Phytophthora species, including most of the approximately 240 formally described or provisionally named species in the genus globally. Arrival and establishment risks are scored and joined with information…","state":"published","supplementalDescription":["Final report"],"supplementalName":["L. J. Barwell, G. Amankwaa, F. Asaaga, K. Turvey, D. E. L. Cooke, R. Mitchell, & B. V. Purse (2025)."],"title":"Ranked current and anticipated threats to Scotland from global Phytophthora species","topic":["0/Environmental risk/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute"],"authorFamilyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"authorFullName":["Barwell, L.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"authorGivenName":["L.","K.","G.","F.","D. E. L.","R.","B. V."],"authorOrcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127"],"availability":"Available","catalogue":"eidc","dataFormat":["TIFF","GeoPackage"],"description":"This dataset maps the risks of Phytophthora ramorum infection for 79062 larch fragments identified in Scotland, of which 79060 were assigned a risk score. Two fragments without climate and/or habitat suitability scores were excluded. Fragment risk scores integrate multiple risk factors. The primary risk factor is climate suitability for P. ramorum using pathogen-specific temperature-dependent growth curves and a relative humidity threshold. Other risk factors integrated are proximity to larch/infected larch within 500m or 5000m and other (non-Larch) wider environment infections within 1500m. Presence of alternative hosts are scored using habitat suitability within the fragment for sporulating hosts (Vaccinium myrtillus, V. vitis-idaea, Acrostaphylos uva-versi) and the reservoir host Rhododendron ponticum. Additionally, proximity to inspected premises with confirmed infections and the presence of water courses are also assessed. The maximum possible risk score for a larch fragment is 12. Fragments were also classified as low, medium or high risk. ","documentType":"GEMINI_DOCUMENT","familyName":["Barwell","Turvey","Amankwaa","Asaaga","Cooke","Mitchell","Purse"],"fullName":["Louise Barwell","Barwell, L.","Turvey, K.","Amankwaa, G.","Asaaga, F.","Cooke, D.E.L.","Mitchell, R.","Purse, B.V."],"funder":["Natural Environment Research Council","Scotland's Plant Health Centre","Department for Environment Food and Rural Affairs"],"givenName":["L","L.","K.","G.","F.","D. E. L.","R.","B. V."],"grant":["NE/V019813/1","PHC2023/02","TH12224FR10"],"identifier":"f6809e00-91cb-494d-babd-5d60d938ad97","incomingCitationCount":1,"keyword":["Environmental risk","Phytophthora ramorum","Larch","Scotland","forestry","exotic species","habitat","pathogenic organism","pest","phytopathology","risk assessment"],"keywordsOther":["Phytophthora ramorum","Larch","Scotland","forestry","exotic species","habitat","pathogenic organism","pest","phytopathology","risk assessment"],"keywordsTheme":["Environmental risk"],"licence":"Open government licence","lineage":"We employed an iterative and collaborative co-production process that brought together stakeholders with diverse expertise from across Scotland’s plant health sector, including forestry, conservation, horticulture, and government agencies to co-design the risk framework. Larch fragments in Scotland were compiled from the National Forest Estate Sub-compartments Scotland 2019, the Native Woodland Survey of Scotland, survey data, Statutory Plant Health Notices and larch layers from Scottish Forestry, and a Phytophthora database. Any areas felled since 2013 were identified and removed using the National Forest Inventory GB from 2013 to 2023 and completed Statutory Plant Health Notices. Key risk factors and their scoring were agreed with 15 cross-sectoral stakeholders through a self-completion survey and two workshops. The risk scoring has been adjusted to reduce the emphasis on proximity to inspected premises as a pathway of spread, reflecting stakeholder perspectives on improved biosecurity practices in trade.  The previous risk analysis for P. ramorum infection for Scotland’s larch fragments (https://doi.org/10.5285/29726cda-09f5-4661-8fd4-ddaa5555466a) has been updated to reflect the removal of larch since 2013 through Statutory Plant Health Notices and other clear-felling, to include new P. ramorum detection data in larch woodlands and inspected premises provided by Scottish Forestry and SASA. In addition, new climate suitability models of pathogen growth are used to score risk of establishment and new species distribution models have been used to score risks of transmission from alternative host species of P. ramorum. The scored fragment data were intersected with the boundaries of local authorities, Scottish Forestry Conservancies, and P. ramorum policy zones to summarise the distribution of risks across regions in Scotland.\n\nThe final report was peer reviewed by the Plant Health Centre. In addition, a knowledge integration and validation workshop (November 13, 2024) examined the adequacy of the outputs for horizon scanning and decision-making across sectors. Validation of the climate suitability models for P. ramorum has been attempted using independent UK and European detections for P. ramorum. This spatial risk framework cannot yet be fully validated until future detection data are available, because previous detections are used within the model and are not independent of the risk scores assigned. However, the previous risk framework for Larch has been cross-validated against subsequent, independent P. ramorum detections, as proof of concept.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T18:31:34.000Z","orcid":["https://orcid.org/0000-0002-1643-1046","https://orcid.org/0009-0001-2611-3391","https://orcid.org/0000-0003-0334-5867","https://orcid.org/0000-0003-2675-9464","https://orcid.org/0000-0002-9154-7954","https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0001-5140-2710"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-10-17T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f6809e00-91cb-494d-babd-5d60d938ad97","10.5285/f6809e00-91cb-494d-babd-5d60d938ad97","doi:10.5285/f6809e00-91cb-494d-babd-5d60d938ad97"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset maps the risks of Phytophthora ramorum infection for 79062 larch fragments identified in Scotland, of which 79060 were assigned a risk score. Two fragments without climate and/or habitat suitability scores were excluded. Fragment risk scores integrate multiple…","state":"published","title":"Spatial risk analysis for Phytophthora ramorum infection in Larch fragments in Scotland","topic":["0/Environmental risk/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorGivenName":["A.","J. K.","J. A.","J. E.","G. 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Each nursery contained Scots pine trees grown using seed collected from 21 native Caledonian pinewood provenances, with 8 seedlings from each of 10 families per provenance (total 1680 trees per nursery) included.\n\nThis dataset was created as part of a multi-site long term garden experimental trial investigating the effect of nursery environment on Scots pine growth and development, and is part of the newLEAF and PROTREE projects. \n\n\n","documentType":"GEMINI_DOCUMENT","familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government","Department for Environment Food and Rural Affairs","Economic and Social Research Council"],"givenName":["A.","J. K.","J. A.","J. E.","G. R.","S."],"grant":["NE/V019813/1","BB/L012243/1"],"identifier":"81841d93-41e2-47a7-b15a-92d1e1cf07f7","incomingCitationCount":0,"keyword":["Environmental survey","Pinus sylvestris","Scots pine","pine forest","Caledonian pinewood","Adaptive trait variation","Common garden experiment","growth","temperature","variance","tree nursery"],"keywordsOther":["Pinus sylvestris","Scots pine","pine forest","Caledonian pinewood","Adaptive trait variation","Common garden experiment","growth","temperature","variance","tree nursery"],"keywordsTheme":["Environmental survey"],"licence":"Open government licence","lineage":"Temperature was automatically recorded hourly using a data logger in each location from 2007 to 2012. Daily maximum, minimum and average temperature and temperature variances were calculated from the hourly data and are presented here.  Where more than one hourly record was missing within a 24 hour period, no temperature or temperature variances were calculated for this day and the day's record is omitted from this dataset","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T16:11:21.000Z","orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre","The James Hutton Institute"],"publicationDate":"2024-10-15T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/81841d93-41e2-47a7-b15a-92d1e1cf07f7","10.5285/81841d93-41e2-47a7-b15a-92d1e1cf07f7","doi:10.5285/81841d93-41e2-47a7-b15a-92d1e1cf07f7"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains daily temperature and temperature variance measurements recorded at three nurseries in Scotland between 2007 and 2012. Each nursery contained Scots pine trees grown using seed collected from 21 native Caledonian pinewood provenances, with 8 seedlings…","state":"published","title":"Long-term multisite Scots pine trial, Scotland: temperatures and temperature variances for tree nurseries, 2007-2012","topic":["0/Environmental survey/"],"version":1.0,"view":["public","jashun"]},{"authorAffiliation":["University of Edinburgh","Universide Eduardo Mondlane","Instituto de Investigação Agrária de Moçambique"],"authorFamilyName":["Brade","Ryan","Fernando Junior","Vilanculos","Jeque"],"authorFullName":["Brade, T.K.","Ryan, C.M.","Fernando Junior, J.","Vilanculos, A.","Jeque, C."],"authorGivenName":["T.K.","C.M.","J.","A.","C."],"authorOrcid":["https://orcid.org/0000-0002-1802-0128"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains tree species and associated measurements from an initial survey of 8 x 1 ha Permanent Sample Plots (PSP) and 2 x 1 ha biomass measurement plots established on the Eastern Plateau of Gorongosa National Park, Sofala, Mozambique, with intention of assessing the long-term impacts of tropical cyclone damage on woodland structure. Methodology used was in accordance with specifications of the Socio Ecological Observatory for Southern African Woodlands (SEOSAW) plot protocol. PSPs were established between 1st August 2019 to 1st October 2019. PSP establishment was undertaken by University of Edinburgh in collaboration with Eduardo Mondlane University and the Mozambique Institute of Agricultural Research (IIAM) with assistance of Gorongosa National Park Scientific Services Department.","documentType":"GEMINI_DOCUMENT","familyName":["Brade","Ryan","Fernando Junior","Vilanculos","Jeque"],"fullName":["Brade, T.K.","Ryan, C.M.","Fernando Junior, J.","Vilanculos, A.","Jeque, C."],"funder":["Natural Environment Research Council"],"givenName":["T.K.","C.M.","J.","A.","C."],"grant":["NE/T004258/1"],"identifier":"8ecabd05-9ad6-4e4a-861c-dd767aba57a0","incomingCitationCount":0,"keyword":["Gorongosa District","Gorongosa National Park","Mozambique","cyclone","stability","ecosystem stability"],"keywordsOther":["cyclone","stability","ecosystem stability"],"keywordsPlace":["Gorongosa District","Gorongosa National Park","Mozambique"],"licence":"Open government licence","lineage":"Data were collected using physical datasheets (copies held by the University of Edinburgh) and entered as csv during and in the period immediately following fieldwork. A series of quality assurance checks were performed on each field and any inexplicable values were cross-checked with physical records to resolve. Species names and taxonomic reference were also standardised at this point. ","locations":["POLYGON((34.162 -19.214, 34.162 -18.443, 34.847 -18.443, 34.847 -19.214, 34.162 -19.214))"],"metadataDate":"2026-06-29T17:09:48.000Z","orcid":["https://orcid.org/0000-0002-1802-0128"],"organisation":["University of Edinburgh","Universide Eduardo Mondlane","Instituto de Investigação Agrária de Moçambique","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"publicationDate":"2020-06-17T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8ecabd05-9ad6-4e4a-861c-dd767aba57a0","10.5285/8ecabd05-9ad6-4e4a-861c-dd767aba57a0","doi:10.5285/8ecabd05-9ad6-4e4a-861c-dd767aba57a0"],"resourceType":"Dataset","ror":["https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains tree species and associated measurements from an initial survey of 8 x 1 ha Permanent Sample Plots (PSP) and 2 x 1 ha biomass measurement plots established on the Eastern Plateau of Gorongosa National Park, Sofala, Mozambique, with intention of…","state":"published","title":"Vegetation data from permanent sample plots established during a 2019 field campaign in Gorongosa National Park, Gorongosa District, Mozambique","version":1.0,"view":["public","hajd"]}],"rows":20,"url":"http://catalogue.ceh.ac.uk:443/eidc/documents?facet=grant%7C(NE/X004449/1%20OR%20NE/T004258/1%20OR%20NE/V019813/1)"}