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Surveys were carried out in the early morning (05:30 to 09:30). Transects were 60 m long and were selected to provide stratified sampling, in an attempt to ensure all habitats were observed within each green space. Transect lines did not overlap. The researcher walked slowly along the transect lines noting any birds on either side of the line, within designated ranges (0-25 m, 26-50 m and 51-100 m). A single experienced ecologist was employed throughout for consistency, and used binoculars to verify more distant sightings. The data sheet was checked to ensure data was logical. There is no guarantee that certain birds were not counted twice, but as the methodology was systematic, the assumption is that the error potential was consistent throughout the entire data set.","locations":["POLYGON((-1.578 53.307, -1.578 53.456, -1.339 53.456, -1.339 53.307, -1.578 53.307))"],"metadataDate":"2026-06-29T16:44:27.000Z","orcid":["https://orcid.org/0000-0002-7786-0581","https://orcid.org/0000-0001-9989-9789"],"organisation":["University of Sheffield","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre","Wild Sheffield Consultancy"],"publicationDate":"2019-06-11T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/aff674ee-cf95-4378-b002-f41c0a5a6a4e","10.5285/aff674ee-cf95-4378-b002-f41c0a5a6a4e","doi:10.5285/aff674ee-cf95-4378-b002-f41c0a5a6a4e"],"resourceType":"Dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/04xw4m193"],"shortenedDescription":"The data records bird species and number in different green spaces within Sheffield City Region during June and July 2018. Activity of individual birds is also noted. Ten green spaces (parks) were surveyed on three occasions, with a researcher walking along six pre-designated…","state":"published","supplementalName":[" Improving well-being through urban nature (IWUN) website"],"title":"Bird abundance and diversity data from Sheffield green spaces in summer 2018","version":1.0,"view":["public","hajd"]},{"authorAffiliation":["Department of Animal and Plant Sciences, University of Sheffield","Lancaster Environment Centre, Lancaster University","Geography, College of Life and Environmental Science, University of Exeter"],"authorFamilyName":["Taylor","Janes-Bassett","Phoenix","Keane","Hartley","Davies"],"authorFullName":["Taylor, C.R.","Janes-Bassett, V.","Phoenix, G.K.","Keane, B.","Hartley, I.P.","Davies, J.A.C."],"authorGivenName":["C.R.","V. ","G.K.","B.","I.P.","J.A.C."],"authorOrcid":["https://orcid.org/0000-0003-4399-7472","https://orcid.org/0000-0002-0911-8107","https://orcid.org/0000-0001-7614-8018"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"Empirical and modelled data from a model investigation into the consequences of nitrogen (N) deposition and nutrient manipulation on carbon (C) and nutrient cycling in phosphorus (P)-limited grasslands. Empirical data show above-ground biomass C, soil organic C and total soil N from two grassland types at Wardlow Hay Cop in the Peak District national park, UK. Wardlow is a long-term nutrient manipulation experiment (> 25 years) investigating the consequences of N deposition on grassland ecosystems. These data were collected during the summer of 2019 and were combined with total soil P data collected previously to form a dataset for inclusion in a CNP biogeochemical cycling model; N14CP.\n\nWe use these empirical data to drive and calibrate the N14CP model in order to develop our understanding of the C, N and P dynamics of the two grasslands. Specifically, we investigate how potential differences in organic P cycling between the two grassland types may explain their contrasting responses to long-term N deposition and further experimental treatments. Accordingly, the bulk of this dataset is modelled data derived from the empirical data, and relates to the responses of plant C, soil C, N and P to N deposition and nutrient manipulation. This includes data on the CNP budgets of the modelled grasslands, P-cycling parameters used within the model, comparisons of empirical to modelled data, and changes in CNP pools resulting from N deposition and nutrient manipulation.\n\n","documentType":"GEMINI_DOCUMENT","familyName":["Taylor","Janes-Bassett","Phoenix","Keane","Hartley","Davies"],"fullName":["Taylor, C.R.","Janes-Bassett, V.","Phoenix, G.K.","Keane, B.","Hartley, I.P.","Davies, J.A.C."],"givenName":["C.R.","V. ","G.K.","B.","I.P.","J.A.C."],"identifier":"98b473c7-3ca9-498d-a851-31152b1f1da7","incomingCitationCount":1,"keyword":["Nitrogen deposition","Phosphorus limitation","Biogeochemical modelling","Grasslands","carbon","phosphorus","nitrogen","soil","pollutant deposition","nitrogen cycle","carbon cycle","nutrient cycle"],"keywordsOther":["carbon","phosphorus","nitrogen","soil","pollutant deposition","nitrogen cycle","carbon cycle","nutrient cycle"],"keywordsTheme":["Nitrogen deposition","Phosphorus limitation","Biogeochemical modelling","Grasslands"],"licence":"Open government licence","lineage":"Empirical data:\nAbove ground biomass carbon was determined from the dry weight of a sward harvest for each nutrient treatment and in both grasslands. Soil organic C and total soil N was determined by acid stripping dried soil to remove carbonates and then analysing it in an isotope-ratio mass spectrometer. Total soil P was taken from previous research at Wardlow. These data were converted into model-compatible units (grams per metre squared) prior to their use in the modelling study. Plant C and soil C and N was collected from all four nutrient treatments; a distilled water control, a low nitrogen (3.5 g N m-2 yr-1) a high nitrogen (14 g N m-2 yr-1) and a phosphorus addition (3.5 g P m-2 yr-1). Total soil P data was only available for the control and high nitrogen treatments.\n\nModelled data:\nThese data were used to calibrate two P-cycling parameters within the N14CP model in order to simulate the nutrient manipulation experiment within the model. After assessing the model’s performance using the empirical data, we investigated the consequences of long-term N deposition and nutrient manipulation on the C, N and P pools of soil and the above ground biomass C pool. All modelled data is in grams per metre squared unless stated otherwise in the metadata. Some modelled data, notably the timeseries, spans the years 1800 – 2020 in order to model changes on longer timescales. Note that the empirical data relates only to the year 2019 in which it was collected, which represents 24 years of experimental nutrient addition.\n","metadataDate":"2026-06-29T16:12:05.000Z","orcid":["https://orcid.org/0000-0003-4399-7472","https://orcid.org/0000-0002-0911-8107","https://orcid.org/0000-0001-7614-8018"],"organisation":["Department of Animal and Plant Sciences, University of Sheffield","Lancaster Environment Centre, Lancaster University","Geography, College of Life and Environmental Science, University of Exeter","NERC Environmental Information Data Centre","University of Sheffield","NERC EDS Environmental Information Data Centre"],"publicationDate":"2021-06-21T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/98b473c7-3ca9-498d-a851-31152b1f1da7","10.5285/98b473c7-3ca9-498d-a851-31152b1f1da7","doi:10.5285/98b473c7-3ca9-498d-a851-31152b1f1da7"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/04xw4m193"],"shortenedDescription":"Empirical and modelled data from a model investigation into the consequences of nitrogen (N) deposition and nutrient manipulation on carbon (C) and nutrient cycling in phosphorus (P)-limited grasslands. Empirical data show above-ground biomass C, soil organic C and…","state":"published","title":"Empirical and modelled carbon, nitrogen and phosphorus content of plants and soils from Wardlow Hay Cop, UK","version":1.0,"view":["public","jualob"]},{"authorAffiliation":["Rhodes University","University of Sheffield","University of Michigan","University of Cape Town","Royal Botanic Garden Edinburgh"],"authorFamilyName":["Ripley","Simpson","Raubenheimer","Singini","Jones","Burgess","Carkeek","Cramer","Dixon","Field","Hawkins","Nell","Ngqiyaza","Pallett","Reynolds","Telford","Vetter","Lehmann","Osborne"],"authorFullName":["Ripley, B.","Simpson, K.","Raubenheimer, S.","Singini, E.","Jones, E.","Burgess, T.","Carkeek, R.","Cramer, M.","Dixon, R.","Field, K.","Hawkins, H.","Nell, R.","Ngqiyaza, N.","Pallett, N.","Reynolds, L.","Telford, E.","Vetter, S.","Lehmann, C.","Osborne, C."],"authorGivenName":["Brad","Kimberley","Sarah","Edith","Emma","Tebadi","Richard","Michael","Russell","Katie","Heidi","Rhys","Nozuko","Nita","Liam","Elizabeth","Susanne","Caroline","Colin"],"authorOrcid":["https://orcid.org/0000-0002-4546-2618","https://orcid.org/0000-0001-6673-227X","https://orcid.org/0000-0001-7219-4631","https://orcid.org/0000-0002-6077-6623","https://orcid.org/0000-0003-0989-3266","https://orcid.org/0000-0002-5196-2360","https://orcid.org/0000-0001-9334-0669","https://orcid.org/0000-0001-6894-4137","https://orcid.org/0000-0002-1511-1083","https://orcid.org/0000-0002-2063-5615","https://orcid.org/0000-0002-6825-124X","https://orcid.org/0000-0002-7423-3718"],"authorRor":["https://ror.org/016sewp10","https://ror.org/05krs5044","https://ror.org/00jmfr291","https://ror.org/03p74gp79","https://ror.org/0349vqz63"],"availability":"Embargoed","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset provides physiological, morphological, and functional trait measurements for twelve African savanna tree species belonging to the Vachellia and Senegalia genera (Fabaceae family). The data encompasses six species classified as encroaching (increasing in density in African savannas) and six non-encroaching species, facilitating comparative analysis of traits facilitating encroachment ability. The variables capture sapling responses to a factorial combination of environmental conditions, specifically atmospheric carbon dioxide concentration, water availability, and interspecific grass competition.\n\nThe dataset details plant performance under elevated CO2 versus ambient CO2 and contrasts well-watered and water-limited conditions. Furthermore, the data includes comparative metrics for trees grown with and without competition from the grass species Themeda triandra. All measurements were derived from saplings grown for 11 months in large pots containing local savanna soil within open-top chambers (Rhodes University Elevated CO2 Facility, Makhanda, South Africa), culminating in physiological assessments and destructive harvesting for morphological analysis.\n\nThe work was supported by the Natural Environment Research Council (Grant NE/T000759/1).","documentType":"GEMINI_DOCUMENT","familyName":["Ripley","Simpson","Raubenheimer","Singini","Jones","Burgess","Carkeek","Cramer","Dixon","Field","Hawkins","Nell","Ngqiyaza","Pallett","Reynolds","Telford","Vetter","Lehmann","Osborne"],"fullName":["Kimberley Simpson","Ripley, B.","Simpson, K.","Raubenheimer, S.","Singini, E.","Jones, E.","Burgess, T.","Carkeek, R.","Cramer, M.","Dixon, R.","Field, K.","Hawkins, H.","Nell, R.","Ngqiyaza, N.","Pallett, N.","Reynolds, L.","Telford, E.","Vetter, S.","Lehmann, C.","Osborne, C."],"funder":["Natural Environment Research Council"],"givenName":["Brad","Kimberley","Sarah","Edith","Emma","Tebadi","Richard","Michael","Russell","Katie","Heidi","Rhys","Nozuko","Nita","Liam","Elizabeth","Susanne","Caroline","Colin"],"grant":["NE/T000759/1"],"identifier":"f7b8e72f-9bbe-4a03-8140-fada73e95b8c","incomingCitationCount":0,"keyword":["Climate and climate change","Savanna encroachment","Woody thickening","Elevated CO2","Functional traits","Drought","Tree-grass competition"],"keywordsOther":["Savanna encroachment","Woody thickening","Elevated CO2","Functional traits","Drought","Tree-grass competition"],"keywordsTheme":["Climate and climate change"],"licence":"Non-Open government licence","lineage":"Data Generation Process\n\nThe data were generated through a controlled split-plot experiment conducted at the Rhodes University Elevated CO2 Facility (RUECF) in Makhanda, South Africa.\n\nExperimental Setup and Environmental Monitoring \nData generation began with the establishment of pots in sixteen open-top chambers (OTCs) designed to impose specific environmental treatments. These treatments included manipulated atmospheric CO2 concentrations (ambient vs. elevated to ~550 ppm), water availability (automated daily irrigation vs. ambient rainfall), and interspecific competition (pots containing established Themeda triandra grass swards vs. bare soil). \n\nCultivation of Biological Material\nThe biological data component originated from twelve indigenous legume species (Vachellia and Senegalia spp.) selected based on their encroachment status. Seeds were heat-shocked to break dormancy, germinated and transplanted into the experimental OTCs. These saplings were grown under the assigned factorial treatment conditions for a period of 11 months (December 2021 - November 2022).\n\nData Acquisition\nFinal data collection was performed in two stages. In the month preceding harvest, physiological trait data were captured in situ. Subsequently, the experiment concluded with the destructive harvesting of all individuals. Morphological and functional trait data were then generated through the physical measurement and analysis of the harvested biomass.","locations":["POLYGON((-18.281 -36.315, -18.281 22.594, 52.385 22.594, 52.385 -36.315, -18.281 -36.315))"],"metadataDate":"2026-06-27T19:46:35.000Z","orcid":["https://orcid.org/0000-0002-4546-2618","https://orcid.org/0000-0001-6673-227X","https://orcid.org/0000-0001-7219-4631","https://orcid.org/0000-0002-6077-6623","https://orcid.org/0000-0003-0989-3266","https://orcid.org/0000-0002-5196-2360","https://orcid.org/0000-0001-9334-0669","https://orcid.org/0000-0001-6894-4137","https://orcid.org/0000-0002-1511-1083","https://orcid.org/0000-0002-2063-5615","https://orcid.org/0000-0002-6825-124X","https://orcid.org/0000-0002-7423-3718"],"organisation":["University of Sheffield","Rhodes University","University of Michigan","University of Cape Town","Royal Botanic Garden Edinburgh","University of Edinburgh","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-02-04T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f7b8e72f-9bbe-4a03-8140-fada73e95b8c","10.5285/f7b8e72f-9bbe-4a03-8140-fada73e95b8c","doi:10.5285/f7b8e72f-9bbe-4a03-8140-fada73e95b8c"],"resourceType":"Dataset","rightsHolder":["University of Sheffield","Rhodes University","University of Edinburgh"],"ror":["https://ror.org/016sewp10","https://ror.org/05krs5044","https://ror.org/00jmfr291","https://ror.org/03p74gp79","https://ror.org/0349vqz63","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset provides physiological, morphological, and functional trait measurements for twelve African savanna tree species belonging to the Vachellia and Senegalia genera (Fabaceae family). The data encompasses six species classified as encroaching (increasing in…","state":"published","title":"Physiological, morphological and functional traits of encroaching and non-encroaching savanna trees under contrasting CO2 concentrations, water stress, and grass competition, South Africa, 2022","topic":["0/Climate and climate change/"],"version":1.0,"view":["public","katwri"]},{"authorAffiliation":["University of Sheffield"],"authorFamilyName":["Johnson","Leake","Read"],"authorFullName":["Johnson, D.","Leake, J.R.","Read, D.J."],"authorGivenName":["D.","J.R.","D.J."],"authorRor":["https://ror.org/05krs5044"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset includes data collected during two related experiments measuring nitrogen (N), phosphorus (P) in roots and shoots.  The measurements enable functional studies of natural communities of arbuscular mycorrhizal (AM) mycelia in soil.  The experiment was carried out at the University of Sheffield using soil from the NERC Soil Biodiversity site at Sourhope in Scotland.\n\nThe work was part of the NERC Soil Biodiversity Thematic Programme, which was established in 1999 and was centred upon the intensive study of a large field experiment located at the Macaulay Land Use Research Institute (now the James Hutton Institute) farm at Sourhope in the Scottish Borders. During the experiment, the site was monitored to assess changes in above-ground biomass production (productivity), species composition and relative abundance (diversity).","documentType":"GEMINI_DOCUMENT","familyName":["Johnson","Leake","Read","Sier"],"fullName":["Johnson, D.","Leake, J.R.","Read, D.J.","Sier, A."],"funder":["Natural Environment Research Council"],"givenName":["D.","J.R.","D.J.","A."],"identifier":"88515edc-bea4-4713-b518-d91d8bfcc03b","incomingCitationCount":0,"keyword":["Soil","arbuscular mycorrhizal mycelia ","Shoots","root","phosphorus","nitrogen","soil"],"keywordsOther":["arbuscular mycorrhizal mycelia ","Shoots","root","phosphorus","nitrogen","soil"],"keywordsTheme":["Soil"],"licence":"Open government licence","lineage":"Data were collected as part of the NERC Soil Biodiversity Thematic Programme, which was established in 1999 and was centred upon the intensive study of a large field experiment located at the Macaulay Land Use Research Institute (MLURI) (now the James Hutton Institute) farm at Sourhope in the Scottish Borders (Grid reference: NT 8545 1963). Data were collected from an experimental facility using soil from the Sourhope site.   Data were collected by students and staff from the University of Sheffield, following defined protocols. Data from the programme were managed by the Centre for Ecology & Hydrology.","metadataDate":"2026-06-27T19:00:50.000Z","organisation":["University of Sheffield","NERC Environmental Information Data Centre","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"publicationDate":"2018-08-20T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/88515edc-bea4-4713-b518-d91d8bfcc03b","10.5285/88515edc-bea4-4713-b518-d91d8bfcc03b","doi:10.5285/88515edc-bea4-4713-b518-d91d8bfcc03b"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/04xw4m193","https://ror.org/00pggkr55"],"shortenedDescription":"This dataset includes data collected during two related experiments measuring nitrogen (N), phosphorus (P) in roots and shoots.  The measurements enable functional studies of natural communities of arbuscular mycorrhizal (AM) mycelia in soil.  The experiment was carried…","state":"published","supplementalDescription":["Website for the NERC Soil Biodiversity Programme\n","Johnson, D., Leake, J.R., Read, D.J., (2001). Novel in-growth core system enables functional studies of grassland mycorrhizal mycelial networks. New Phytologist 152, 555-562.","Usher, M.B., Sier, A.R., Hornung, M. and Millard, P., 2006. Understanding biological diversity in soil: the UK's Soil Biodiversity Research Programme. Applied Soil Ecology, 33(2), pp.101-113."],"supplementalName":["Soil Biodiversity website"],"title":"Measurements of nutrient cycling within grassland mycorrhizal mycelial networks [NERC Soil Biodiversity Programme]","topic":["0/Soil/"],"version":1.0,"view":["public","clamw"]},{"authorAffiliation":["Queen's University Belfast","Institute for Animal Science","University of California, Los Angeles","Czech University of Life Sciences","Queen’s University Belfast"],"authorFamilyName":["Mortlock","Esattore","Bartoš","Lyamin","Ježek","Capellini"],"authorFullName":["Mortlock, E.","Esattore, B.","Bartoš, L.","Lyamin, O.","Ježek, M.","Capellini, I."],"authorGivenName":["E.","B.","L.","O.","M.","I."],"authorOrcid":["https://orcid.org/0000-0002-1434-7107","https://orcid.org/0000-0003-1024-794X","https://orcid.org/0000-0003-2667-5930","https://orcid.org/0000-0003-2049-0943","https://orcid.org/0000-0002-4127-9947","https://orcid.org/0000-0001-8065-2436"],"authorRor":["https://ror.org/00strmv13","https://ror.org/046rm7j60","https://ror.org/0415vcw02"],"availability":"Available","catalogue":"eidc","dataFormat":["Plain text"],"description":"This dataset contains biologging data of captive red deer Cervus elaphus, to study sleep behaviour. This includes acceleration (m/s2), magnetometer (gauss), and temperature (degrees Celsius) measurements, collected using collar-mounted accelerometer and magnetometer recorders at 20Hz.\n\nThis data was collected from 18 adult individuals; 13 male, 5 female, in 2023 over three deployments. Deployment 1 (males) 13/06/23 – 1/8/23; deployment 2 (males) 04/09/23 – 08/11/23; deployment 3 (females) 13/11/23 – 21/11/23. Deer were housed at the VUZV facility, Uhrineves, Prague, Czech Republic.\n\nThis dataset was funded by NERC, as part of project “NE/X010368/1: Sleep in the landscape of fear” and was measured to aid in the creation of a classification model to detect sleep in red deer from collar accelerometers, as well as to test arousal thresholds in sleeping deer.\n","documentType":"GEMINI_DOCUMENT","familyName":["Mortlock","Esattore","Bartoš","Lyamin","Ježek","Capellini"],"fullName":["Mortlock, E.","Esattore, B.","Bartoš, L.","Lyamin, O.","Ježek, M.","Capellini, I."],"funder":["Natural Environment Research Council"],"givenName":["E.","B.","L.","O.","M.","I."],"grant":["NE/X010368/1"],"identifier":"e7fdf789-e663-4422-92c2-ea8019b3cc26","incomingCitationCount":0,"keyword":["Animal behaviour","biologging","deer","red deer","animal behaviour","accelerometery","Cervus elaphus"],"keywordsOther":["biologging","deer","red deer","animal behaviour","accelerometery","Cervus elaphus"],"keywordsTheme":["Animal behaviour"],"licence":"Open government licence","lineage":"Biologgers were calibrated immediately prior to deployment. Deer were manipulated in a standard farm handling crush and were not immobilised for deployment. Biologgers were recovered in the same manner.\n\nData was downloaded directly from the Daily Diary logger units and stored in raw format. Data has been transformed into .txt format for reusability across different software. No other processing has taken place, other than screening for device failures, which have been removed from the dataset. \n","locations":["POLYGON((14.595 50.032, 14.595 50.043, 14.606 50.043, 14.606 50.032, 14.595 50.032))"],"metadataDate":"2026-06-29T16:07:13.000Z","orcid":["https://orcid.org/0000-0002-1434-7107","https://orcid.org/0000-0003-1024-794X","https://orcid.org/0000-0003-2667-5930","https://orcid.org/0000-0003-2049-0943","https://orcid.org/0000-0002-4127-9947","https://orcid.org/0000-0001-8065-2436"],"organisation":["Queen's University Belfast","Institute for Animal Science","University of California, Los Angeles","Czech University of Life Sciences","Queen’s University Belfast","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-08-07T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e7fdf789-e663-4422-92c2-ea8019b3cc26","10.5285/e7fdf789-e663-4422-92c2-ea8019b3cc26","doi:10.5285/e7fdf789-e663-4422-92c2-ea8019b3cc26"],"resourceType":"Dataset","rightsHolder":["Queen's University Belfast"],"ror":["https://ror.org/00strmv13","https://ror.org/046rm7j60","https://ror.org/0415vcw02","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains biologging data of captive red deer Cervus elaphus, to study sleep behaviour. This includes acceleration (m/s2), magnetometer (gauss), and temperature (degrees Celsius) measurements, collected using collar-mounted accelerometer and magnetometer…","state":"published","title":"Biologging data of captive red deer, Prague, Czechia, June-November 2023","topic":["0/Animal behaviour/"],"version":1.0,"view":["public","jashun"]},{"authorAffiliation":["University of Sheffield"],"authorFamilyName":["Fairbanks","Thomson","Martin"],"authorFullName":["Fairbanks, S.","Thomson, J.","Martin, N."],"authorGivenName":["S.","J.","Nicolas"],"authorOrcid":["https://orcid.org/0000-0002-6380-559X"],"authorRor":["https://ror.org/05krs5044"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"These dataset files show the calibration of a sensor for mercury (II) ions using a Fluorimeter and either HgCl2 or HgNO3.\n\n A range of different sample conditions are tested, including sensor concentrations and relative proportions of water and a methanol co-solvent (required for solubility of the probe). Also tested was the ability of acid to affect the probes sensitivity to mercury as nitric acid is needed for the stability of HgNO3 as an analyte. File names listed show the concentration of sensor and the ratio of water to methanol tested. \n\nInductively coupled plasma mass spectrometry (ICP-MS) data are also given these are used to validate the sensors calibration and also to monitor the levels of soluble mercury content of dental amalgam samples held at either (11⁰C or 37⁰C) in water and saliva. The supernatant of these suspensions is filtered and measured using ICP-MS to give the data as reported.","documentType":"GEMINI_DOCUMENT","familyName":["Fairbanks","Thomson","Martin"],"fullName":["Fairbanks, S.","Thomson, J.","Martin, N."],"funder":["Natural Environment Research Council"],"givenName":["S.","J.","Nicolas"],"grant":["NE/T004967/1"],"identifier":"bc82f15b-8db6-4398-bfec-655a1eecf2d7","incomingCitationCount":0,"keyword":["Hg","dental amalgam","mercury"],"keywordsOther":["Hg","dental amalgam","mercury"],"licence":"Open government licence","lineage":"Calibration is done by measuring the luminescent response of the sensor (exciting at 500nm) to various concentrations of Hg(II). A linear relation to increasing mercury concentration can be applied to measure unknown sample concentrations. The calibration graphs from each of the raw fluorimeter data are given in the PowerPoint file. The file showing the dental clinical and amalgam samples are tested using a 1µM sensor to see whether a measurable response is seen to real mercury samples in different media (saliva, distilled water or amalgam separator supernatant). ","metadataDate":"2026-06-29T17:27:24.000Z","orcid":["https://orcid.org/0000-0002-6380-559X"],"organisation":["University of Sheffield","NERC EDS Environmental Information Data Centre"],"publicationDate":"2022-02-16T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/bc82f15b-8db6-4398-bfec-655a1eecf2d7","10.5285/bc82f15b-8db6-4398-bfec-655a1eecf2d7","doi:10.5285/bc82f15b-8db6-4398-bfec-655a1eecf2d7"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/04xw4m193"],"shortenedDescription":"These dataset files show the calibration of a sensor for mercury (II) ions using a Fluorimeter and either HgCl2 or HgNO3.\n\n A range of different sample conditions are tested, including sensor concentrations and relative proportions of water and a methanol co-solvent…","state":"published","title":"Fluorimeter response of ruthenium based sensor to mercury ions in water and acetonitrile","version":1.0,"view":["public","clwe"]},{"authorAffiliation":["University of Sheffield","Wageningen University","Consiglio Nazionale delle Ricerche","University of Exeter"],"authorFamilyName":["Keane","Hoosbeek","Taylor","Miglietta","Phoenix","Hartley"],"authorFullName":["Keane, J.B.","Hoosbeek, M.R.","Taylor, C.R.","Miglietta, F.","Phoenix, G.K.","Hartley, I.P."],"authorGivenName":["J.B.","M.R.","C.R.","F.","G.K.","I.P."],"authorOrcid":["https://orcid.org/0000-0001-7614-8018","https://orcid.org/0000-0003-0617-0089","https://orcid.org/0000-0003-4399-7472","https://orcid.org/0000-0003-1474-8143","https://orcid.org/0000-0002-0911-8107","https://orcid.org/0000-0002-9183-6617"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains potential activities of soil extra cellular enzyme measured from soil samples from the Phosphorus Limitation And ecosystem responses to Carbon dioxide Enrichment (PLACE). The enzyme activities measured are 1,4-β-glucosidase, cellobiohydrolase, N-acetyl β-D-glucosaminidase, leucine aminopeptidase, and acid phosphatase.\n\nSoil samples were collected in Autumn 2018 and analysed in the laboratory at Wageningen University.\n\nThe experimental design uses 35 cm x 35 cm turf mesocosms from a long term nutrient manipulation experiment. The original experiment is based at Wardlow Hay Cop in the Peak District, UK. Two adjacent P-limited grass lands on a limestone/ calcareous soil and an acidic soil have had nutrient manipulated for more than 20 years. In 2018 these mesocosms were exposed to either ambient CO2 (ca. 410 ppm) or 600 ppm.","documentType":"GEMINI_DOCUMENT","familyName":["Keane","Hoosbeek","Taylor","Miglietta","Phoenix","Hartley"],"fullName":["Keane, J.B.","Hoosbeek, M.R.","Taylor, C.R.","Miglietta, F.","Phoenix, G.K.","Hartley, I.P.","Keane, B."],"givenName":["J.B.","M.R.","C.R.","F.","G.K.","I.P.","Ben"],"identifier":"5e944db2-305f-4f15-87b4-5110224ac90d","incomingCitationCount":0,"keyword":["Environmental survey","Climate and climate change","Enzyme stoichiometry","Soil microbe","eCO2","phosphorus","nitrogen","carbon dioxide","soil"],"keywordsOther":["Enzyme stoichiometry","Soil microbe","eCO2","phosphorus","nitrogen","carbon dioxide","soil"],"keywordsTheme":["Environmental survey","Climate and climate change"],"licence":"Open government licence","lineage":"All data were generated by the authors. Enzyme analyses were conducted in triplicate (technical replication) and activities of unknown samples were calculated in reference to known substrate standards. All calculations were checked for errors prior to acceptance.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"metadataDate":"2026-06-29T18:18:30.000Z","orcid":["https://orcid.org/0000-0001-7614-8018","https://orcid.org/0000-0003-0617-0089","https://orcid.org/0000-0003-4399-7472","https://orcid.org/0000-0003-1474-8143","https://orcid.org/0000-0002-0911-8107","https://orcid.org/0000-0002-9183-6617"],"organisation":["University of Sheffield","Wageningen University","Consiglio Nazionale delle Ricerche","University of Exeter","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2021-01-13T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/5e944db2-305f-4f15-87b4-5110224ac90d","10.5285/5e944db2-305f-4f15-87b4-5110224ac90d","doi:10.5285/5e944db2-305f-4f15-87b4-5110224ac90d"],"resourceType":"Dataset","rightsHolder":["University of Sheffield","University of Exeter"],"ror":["https://ror.org/04xw4m193","https://ror.org/05krs5044","https://ror.org/03yghzc09"],"shortenedDescription":"This dataset contains potential activities of soil extra cellular enzyme measured from soil samples from the Phosphorus Limitation And ecosystem responses to Carbon dioxide Enrichment (PLACE). The enzyme activities measured are 1,4-β-glucosidase, cellobiohydrolase,…","state":"published","title":"Soil extracellular enzyme activity under controlled CO2 concentrations, Sheffield","topic":["0/Environmental survey/","0/Climate and climate change/"],"version":1.0,"view":["public","clwe"]},{"authorAffiliation":["University of Sheffield","University of Oxford"],"authorFamilyName":["Hatchwell","Green"],"authorFullName":["Hatchwell, B.J.","Green, J.P."],"authorGivenName":["B.J.","J.P."],"authorOrcid":["https://orcid.org/0000-0002-1039-4782","https://orcid.org/0000-0001-8728-2810"],"authorRor":["https://ror.org/05krs5044","https://ror.org/052gg0110"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"Dataset comprising data on the lifetime reproductive success (LRS) of 879 individually marked long-tailed tits Aegithalos caudatus, a cooperatively breeding passerine. LRS is measured in terms of the number of local recruits into the breeding population in the study area, controlling for fledgling sex and extra-pair paternity. LRS data are then partitioned into direct and indirect fitness components, quantified as genetic equivalents. Partitioning of fitness follows Hamilton’s definition of inclusive fitness: (a) direct fitness is measured as the production of offspring, stripped of the social effect of helpers on productivity; (b) indirect fitness is calculated from the mean marginal effect of a helper on productivity, adjusted for helper relatedness. Inclusive fitness is calculated by summing direct and indirect fitness.","documentType":"GEMINI_DOCUMENT","familyName":["Hatchwell","Green"],"fullName":["Hatchwell, B.J.","Green, J.P."],"funder":["Natural Environment Research Council"],"givenName":["B.J.","J.P."],"grant":["NE/R001669/1"],"identifier":"0e55f507-e5bd-4678-a5ea-8c3ffb62d3ac","incomingCitationCount":0,"keyword":["long-tailed tit","Aegithalos caudatus","lifetime reproductive success","inclusive fitness","indirect fitness","direct fitness"],"keywordsOther":["long-tailed tit","Aegithalos caudatus","lifetime reproductive success","inclusive fitness","indirect fitness","direct fitness"],"licence":"Open government licence","lineage":"Data was collected following systematic fieldwork protocols from 1994 to 2019. We studied a colour ringed population of 17-72pairs of long-tailed tits from 1994 to 2019 in an approximately 2.5 km2 section of the Rivelin Valley (53°23’N, 1°34’W), Sheffield, UK. The breeding attempts of all individuals in our study population were monitored closely throughout the breeding season. Nests were found by following pairs and subsequently monitored closely (at approximately 2-4 day intervals until they failed or broods fledged. It is estimated that more than 95% of nests within the study site are found each year with undetected nesting attempts typically failing early in the breeding cycle. Life history traits including timing of breeding (i.e. dates of laying, incubation, hatching and fledging, typically recorded ± 1 day), clutch size (n eggs), brood size (n nestlings), and the identity of parents and helpers were recorded. Nestlings in accessible nests were ringed with a unique colour-ring combination and with a British Trust for Ornithology (BTO) ring when 11 days old, and we sexed each individual using molecular techniques from blood samples taken by brachial venepuncture (under Home Office licence). More than 95% of all adults are ringed by the end of each breeding season with a BTO ring and a unique combination of two colour rings. Survival of offspring to 1 year of age was assessed from recruitment into the study population. Some birds (especially females) disperse beyond the boundaries of the study site, but we assume that local recruitment is proportional to brood productivity. We also assume that breeders that disappear from the study site are dead, an assumption validated by a high resighting probability of marked birds. Life history data are entered into an excel spreadsheet on the day of data collection, supervised by Hatchwell. At the end of each season, data are entered into a bespoke Access database that is designed to identify errors of individual identification, timing of events and magnitude of input variables. The dataset provided to the data centre uses data extracted directly from the Access database that has been subjected to quality control at the time of data collection and entry, and by the design of the database itself. See supporting documentation for method for generation of direct, indirect and inclusive fitness data.","locations":["POLYGON((-1.593 53.375, -1.593 53.393, -1.511 53.393, -1.511 53.375, -1.593 53.375))"],"metadataDate":"2026-06-29T16:41:42.000Z","orcid":["https://orcid.org/0000-0002-1039-4782","https://orcid.org/0000-0001-8728-2810"],"organisation":["University of Sheffield","University of Oxford","NERC EDS Environmental Information Data Centre"],"publicationDate":"2022-06-23T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0e55f507-e5bd-4678-a5ea-8c3ffb62d3ac","10.5285/0e55f507-e5bd-4678-a5ea-8c3ffb62d3ac","doi:10.5285/0e55f507-e5bd-4678-a5ea-8c3ffb62d3ac"],"resourceType":"Dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/052gg0110","https://ror.org/04xw4m193"],"shortenedDescription":"Dataset comprising data on the lifetime reproductive success (LRS) of 879 individually marked long-tailed tits Aegithalos caudatus, a cooperatively breeding passerine. LRS is measured in terms of the number of local recruits into the breeding population in the study…","state":"published","title":"Lifetime reproductive success and fitness estimates of long-tailed tits in the Rivelin Valley, Sheffield, UK, from 1994-2019","version":1.0,"view":["public","margla"]},{"authorAffiliation":["University of Sheffield"],"authorFamilyName":["Johnson","Leake","Read"],"authorFullName":["Johnson, D.","Leake, J.R.","Read, D.J."],"authorGivenName":["D.","J.R.","D.J."],"authorRor":["https://ror.org/05krs5044"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset includes measurements of carbon-14 transfer from plants to soil within mesh cores.  Measurements were taken in roots, shoots, soil and from respiration.  Mesh cores were either static or rotated to provide plus and minus mycorrhizal mycelial systems. Carbon-14 was traced through cores as respiration using KOH (Potassium hydroxide) traps.\n\nThe experiment was carried out at the University of Sheffield using soil from the NERC Soil Biodiversity site in Scotland.  The work was part of the NERC Soil Biodiversity Thematic Programme, which was established in 1999 and was centred upon the intensive study of a large field experiment located at the Macaulay Land Use Research Institute (now the James Hutton Institute) farm at Sourhope in the Scottish Borders. During the experiment, the site was monitored to assess changes in above-ground biomass production (productivity), species composition and relative abundance (diversity). ","documentType":"GEMINI_DOCUMENT","familyName":["Johnson","Leake","Read","Sier"],"fullName":["Johnson, D.","Leake, J.R.","Read, D.J.","Sier, A."],"funder":["Natural Environment Research Council"],"givenName":["D.","J.R.","D.J.","A."],"identifier":"39b8bd96-af67-4f61-a040-0682043df938","incomingCitationCount":0,"keyword":["Soil","Carbon 14","14C","Respiration","respiration","carbon","Plants","soil","root","Shoots","Mesh cores"],"keywordsOther":["Carbon 14","14C","Respiration","respiration","carbon","Plants","soil","root","Shoots","Mesh cores"],"keywordsTheme":["Soil"],"licence":"Open government licence","lineage":"Data were collected as part of the NERC Soil Biodiversity Thematic Programme, which was established in 1999 and was centred upon the intensive study of a large field experiment located at the Macaulay Land Use Research Institute (MLURI) (now the James Hutton Institute) farm at Sourhope in the Scottish Borders (Grid reference: NT 8545 1963). These data were collected from an experimental facility using soil from the Sourhope site. Data were collected by students and staff from the University of Sheffield, following defined protocols. Data from the programme were managed by the Centre for Ecology & Hydrology.","metadataDate":"2026-06-29T16:23:15.000Z","organisation":["University of Sheffield","UK Centre for Ecology & Hydrology","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"publicationDate":"2018-08-20T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/39b8bd96-af67-4f61-a040-0682043df938","10.5285/39b8bd96-af67-4f61-a040-0682043df938","doi:10.5285/39b8bd96-af67-4f61-a040-0682043df938"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset includes measurements of carbon-14 transfer from plants to soil within mesh cores.  Measurements were taken in roots, shoots, soil and from respiration.  Mesh cores were either static or rotated to provide plus and minus mycorrhizal mycelial systems. Carbon-14…","state":"published","supplementalDescription":["Johnson, D., Leake, J.R., Read, D.J., (2001). Novel in-growth core system enables functional studies of grassland mycorrhizal mycelial networks. New Phytologist 152, 555-562.","Johnson, D., Leake, J. R., & Read, D. J. (2002). Transfer of recent photosynthate into mycorrhizal mycelium of an upland grassland: short-term respiratory losses and accumulation of 14C. Soil Biology and Biochemistry, 34(10), 1521-1524.","Usher, M.B., Sier, A.R., Hornung, M. and Millard, P., 2006. Understanding biological diversity in soil: the UK's Soil Biodiversity Research Programme. Applied Soil Ecology, 33(2), pp.101-113.","Website for the NERC Soil Biodiversity Programme\n"],"supplementalName":["Novel in-growth core system enables functional studies of grassland mycorrhizal mycelial networks","Transfer of recent photosynthate into mycorrhizal mycelium of an upland grassland: short-term respiratory losses and accumulation of 14C","Understanding biological diversity in soil: the UK's Soil Biodiversity Research Programme","Soil Biodiversity website"],"title":"Measurements of carbon-14 transfer from plants to soil within mesh cores [NERC Soil Biodiversity Programme]","topic":["0/Soil/"],"version":1.0,"view":["public","clamw"]},{"authorAffiliation":["University of Sheffield","University of York"],"authorFamilyName":["Bray","Hodson","Watt"],"authorFullName":["Bray, R.V.A.","Hodson, M.E.","Watt, P.J."],"authorGivenName":["Roberta V A","Mark E","Penelope J"],"authorOrcid":["https://orcid.org/0009-0003-7249-6826","https://orcid.org/0000-0002-8166-1526","https://orcid.org/0000-0001-5356-6188"],"authorRor":["https://ror.org/05krs5044","https://ror.org/04m01e293"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains measurements of adult Allolobophora chlorotica (Savigny, 1826) earthworm body mass and behavioural state (active or aestivating) under drying conditions in four soils of contrasting textures (LUFA 2.1, 2.2, 2.4 and 6S). Water retention curves were generated for each soil texture using HYPROP instruments to derive water potential (pF) values from gravimetric moisture contents (wt%). Individual earthworms were subjected to gradual drying within one of the four soils in a controlled temperature environment. Each soil was sampled at three water potentials and three gravimetric moisture contents to assess behavioural (active vs aestivating) and physiological (changes in body mass) responses of Al. chlorotica to drought stress, and to determine whether these responses vary with soil texture.","documentType":"GEMINI_DOCUMENT","familyName":["Bray","Hodson","Watt"],"fullName":["Roberta Bray","Bray, R.V.A.","Hodson, M.E.","Watt, P.J."],"funder":["Natural Environment Research Council"],"givenName":["Roberta V A","Mark E","Penelope J"],"grant":["NE/S00713X/1"],"identifier":"f6b7b062-b421-422c-a1c3-3892937cad0e","incomingCitationCount":0,"keyword":["Animal behaviour","Soil","Climate and climate change","earthworm","soil texture","drought","animal behaviour","agricultural ecology","soil moisture","aestivation"],"keywordsOther":["earthworm","soil texture","drought","animal behaviour","agricultural ecology","soil moisture","aestivation"],"keywordsTheme":["Animal behaviour","Soil","Climate and climate change"],"licence":"Open government licence","lineage":"Water retention curves were generated for each soil texture using HYPROP instruments to derive water potential (pF) values from gravimetric moisture contents (wt%). Individual Allolobophora chlorotica earthworms were subjected to gradual drying within one of the four soils in a controlled temperature environment. Each soil was sampled at three water potentials (pF 1.59, 2.92 and 4.05) and three gravimetric moisture contents (19.7, 15.55 and 12.39 wt%).","metadataDate":"2026-06-29T18:10:33.000Z","orcid":["https://orcid.org/0009-0003-7249-6826","https://orcid.org/0000-0002-8166-1526","https://orcid.org/0000-0001-5356-6188"],"organisation":["University of Sheffield","University of York","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-05-28T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f6b7b062-b421-422c-a1c3-3892937cad0e","10.5285/f6b7b062-b421-422c-a1c3-3892937cad0e","doi:10.5285/f6b7b062-b421-422c-a1c3-3892937cad0e"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/04m01e293","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains measurements of adult Allolobophora chlorotica (Savigny, 1826) earthworm body mass and behavioural state (active or aestivating) under drying conditions in four soils of contrasting textures (LUFA 2.1, 2.2, 2.4 and 6S). Water retention curves were…","state":"published","title":"Body mass and behavioural responses of Allolobophora chlorotica earthworms to water potential and gravimetric moisture under drying in four soils of contrasting texture","topic":["0/Animal behaviour/","0/Soil/","0/Climate and climate change/"],"version":1.0,"view":["public","glenn"]},{"authorAffiliation":["University of Sheffield","Kākāpō Recovery, New Zealand Department of Conservation"],"authorFamilyName":["Savage","Crane","Hemmings"],"authorFullName":["Savage, J.L.","Crane, J.M.S.","Hemmings, N."],"authorGivenName":["J.L.","J.M.S.","N."],"authorOrcid":["https://orcid.org/0000-0002-4737-5673","https://orcid.org/0000-0003-4441-8399","https://orcid.org/0000-0003-2418-3625"],"authorRor":["https://ror.org/05krs5044","https://ror.org/03mh7j916"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains information on the fertility and physical characteristics of kākāpō (Strigops habroptilus) eggs laid on Anchor and Whenua Hou islands, New Zealand during the 2018/19 breeding season. Of the 252 total eggs laid, 129 failed to develop; undeveloped eggs were dissected, fixed in formalin, and then inspected using fluorescence microscopy at the University of Sheffield UK. For all eggs, data are provided on mother and clutch of origin, developmental stage reached, and maternal mating behaviour. For dissected undeveloped eggs, additional data include fertilisation status, numbers of sperm visible on the perivitelline layer, egg size and weight, dry eggshell weight, and yolk and albumen weights.","documentType":"GEMINI_DOCUMENT","familyName":["Savage","Crane","Hemmings"],"fullName":["Savage, J.L.","Crane, J.M.S.","Hemmings, N.","Savage, J."],"givenName":["J.L.","J.M.S.","N.","James"],"identifier":"cd0e9bc1-bd57-44ae-9fec-2f6239e8726d","incomingCitationCount":1,"keyword":["New Zealand","Environmental survey","Eggshells","Embryo mortality","Infertility","Kākāpō","Hatching failure","Sperm","Kakapo","Strigops habroptilus","conservation","mortality"],"keywordsOther":["Eggshells","Embryo mortality","Infertility","Kākāpō","Hatching failure","Sperm","Kakapo","Strigops habroptilus","conservation","mortality"],"keywordsPlace":["New Zealand"],"keywordsTheme":["Environmental survey"],"licence":"Open government licence","lineage":"All data were collected by the authors or by other staff within the New Zealand Department of Conservation Kākāpō Recovery Team. All data collection was carried out by trained and experienced staff following established conservation management or laboratory protocols. \n\nAll data were collected in field or lab notebooks in the first instance, then transcribed to digital spreadsheets. Measurements reported in data files were checked against original notebooks before data deposition. Original notebooks are held at the University of Sheffield, UK, and with the Kākāpō Recovery Team, NZ; the latter also maintains a comprehensive kākāpō database. \n\nSee documentation file for further methodological details and data collection roles.","locations":["POLYGON((166.478 -46.803, 166.478 -45.739, 167.675 -45.739, 167.675 -46.803, 166.478 -46.803))"],"metadataDate":"2026-06-29T18:27:17.000Z","orcid":["https://orcid.org/0000-0002-4737-5673","https://orcid.org/0000-0003-4441-8399","https://orcid.org/0000-0003-2418-3625"],"organisation":["University of Sheffield","Kākāpō Recovery, New Zealand Department of Conservation","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2020-09-18T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/cd0e9bc1-bd57-44ae-9fec-2f6239e8726d","10.5285/cd0e9bc1-bd57-44ae-9fec-2f6239e8726d","doi:10.5285/cd0e9bc1-bd57-44ae-9fec-2f6239e8726d"],"resourceType":"Dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/03mh7j916","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains information on the fertility and physical characteristics of kākāpō (Strigops habroptilus) eggs laid on Anchor and Whenua Hou islands, New Zealand during the 2018/19 breeding season. Of the 252 total eggs laid, 129 failed to develop; undeveloped…","state":"published","supplementalDescription":["Website of the New Zealand Department of Conservation Kākāpō Recovery Programme."],"supplementalName":["Kākāpō Recovery"],"title":"Kākāpō (Strigops habroptilus) egg fertility on Anchor and Whenua Hou islands, New Zealand, 2019 breeding season","topic":["0/Environmental survey/"],"version":1.0,"view":["public","clwe"]},{"authorAffiliation":["Queen's University Belfast"],"authorFamilyName":["Bach","Emmerson"],"authorFullName":["Bach, L.L.","Emmerson, M."],"authorGivenName":["L.L.","M."],"authorOrcid":["https://orcid.org/0000-0002-5483-8891","https://orcid.org/0000-0003-1034-8572"],"authorRor":["https://ror.org/00hswnk62"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"The dataset details larger mobile fish and macrofaunal abundance across six intertidal sites in the winter and summer of 2013, sampled using fyke nets. The data provide a quantitative measure of larger mobile invertebrate and fish species present in fyke nets caught over two executive tidal cycles at three sites in Essex, South East England and three more sites in Morecambe Bay, North West England. At each site, 22 sampling quadrats were placed on the mud flat covering 4 spatial scales. At each of these, unbaited fyke nets were deployed perpendicular to the shore over two tidal cycles. Upon removal, the species were identified to species level and individuals counted. For each species wet weight (g) was calculated.\n\nThis data was collected as part of Coastal Biodiversity and Ecosystem Service Sustainability (CBESS): NE/J015644/1. The project was funded with support from the Biodiversity and Ecosystem Service Sustainability (BESS) programme. BESS is a six-year programme (2011-2017) funded by the UK Natural Environment Research Council (NERC) and the Biotechnology and Biological Sciences Research Council (BBSRC) as part of the UK's Living with Environmental Change (LWEC) programme.","documentType":"GEMINI_DOCUMENT","familyName":["Emmerson","Bach"],"fullName":["Emmerson, M.","Bach, L.L."],"funder":["Natural Environment Research Council"],"givenName":["Mark","L.L.","M."],"grant":["NE/J015644/1"],"identifier":"778ac3e5-a796-46a0-8390-0b6527598d8b","incomingCitationCount":0,"keyword":["Morecambe Bay","Essex","United Kingdom","Biodiversity","Carcinus maenas","Platichthys flesus"],"keywordsOther":["Carcinus maenas","Platichthys flesus"],"keywordsPlace":["Morecambe Bay","Essex","United Kingdom"],"keywordsTheme":["Biodiversity"],"licence":"Open government licence","lineage":"The location of the sample sites was determined by randomly allocated quadrats. Twenty two 1 x 1 m quadrats were randomly allocated to each mudflat and saltmarsh site using R (R Development Core Team, 2014) to specify four different spatial scales (A = 1 quadrat only, B = 3 quadrats at 1 m to 10 m apart, C = 6 quadrats at 10 m to 100 m apart, D = 12 quadrats at 100 m to 1000 m or site maximum). At each of these, one fyke net was deployed perpendicular to the shore and over the course of two tidal cycles. The fyke net was a five hoop double fyke net (mesh size: 22mm knot to knot, 8m leader, 0.5m hoop).\n","locations":["POLYGON((0.826 51.687, 0.826 51.856, 1.005 51.856, 1.005 51.687, 0.826 51.687))"],"metadataDate":"2026-06-29T16:06:59.000Z","orcid":["https://orcid.org/0000-0002-5483-8891","https://orcid.org/0000-0003-1034-8572"],"organisation":["Queen's University Belfast","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"publicationDate":"2017-09-05T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/778ac3e5-a796-46a0-8390-0b6527598d8b","10.5285/778ac3e5-a796-46a0-8390-0b6527598d8b","doi:10.5285/778ac3e5-a796-46a0-8390-0b6527598d8b"],"resourceType":"Dataset","rightsHolder":["Queen's University Belfast"],"ror":["https://ror.org/00hswnk62","https://ror.org/04xw4m193"],"shortenedDescription":"The dataset details larger mobile fish and macrofaunal abundance across six intertidal sites in the winter and summer of 2013, sampled using fyke nets. The data provide a quantitative measure of larger mobile invertebrate and fish species present in fyke nets caught…","state":"published","title":"Coastal Biodiversity and Ecosystem Service Sustainability (CBESS) larger mobile macrofaunal abundance, biomass and species richness from fyke netting in mudflat habitats","topic":["0/Biodiversity/"],"version":1.0,"view":["public","hajd"]},{"authorAffiliation":["University of Sheffield","Natural History Museum, London"],"authorFamilyName":["Thomas","Varley","Hughes","Guillerme","Cooper","Beckerman"],"authorFullName":["Thomas, G.H.","Varley, Z.K.","Hughes, E.C.","Guillerme, T.","Cooper, N.","Beckerman, A.P."],"authorGivenName":["G.H.","Z.K.","E.C.","T.","N.","A.P."],"authorOrcid":["https://orcid.org/0000-0002-1982-6051","https://orcid.org/0009-0003-6814-7279","https://orcid.org/0000-0003-4682-6257","https://orcid.org/0000-0003-4325-1275","https://orcid.org/0000-0003-4919-8655","https://orcid.org/0000-0002-4797-9143"],"authorRor":["https://ror.org/05krs5044","https://ror.org/039zvsn29"],"availability":"Available","catalogue":"eidc","dataFormat":["Polygon file format (.ply)"],"description":"The data consists of 3D surface scans of the beaks of 662 museum specimens of sixteen species (representing fifteen families of passerine birds: Fringillidae, Ploceidae, Passeridae, Viduidae, Thraupidae, Estrildidae, Artamidae, Cardinalidae, Sittidae, Prunellidae, Motacillidae, Emberizidae, Alaudidae, Cinclidae, Bombycillidae). Each species has scans from between 23 and 31 specimens with the exception of chaffinches (Fringilla coelebs), with scans from 230 specimens representing fourteen subspecies.","documentType":"GEMINI_DOCUMENT","familyName":["Thomas","Varley","Hughes","Guillerme","Cooper","Beckerman"],"fullName":["Thomas, G.","Thomas, G.H.","Varley, Z.K.","Hughes, E.C.","Guillerme, T.","Cooper, N.","Beckerman, A.P."],"funder":["Natural Environment Research Council"],"givenName":["Gavin","G.H.","Z.K.","E.C.","T.","N.","A.P."],"grant":["NE/T000139/1"],"identifier":"e53b2c4f-fc2e-47a9-b5b7-cc3a59f790ac","incomingCitationCount":0,"keyword":["Evolutionary ecology","Aves","passerines","chaffinch","Passeriformes","morphometrics","morphology","Fringillidae","Ploceidae","Passeridae","Viduidae","Thraupidae","Estrildidae","Artamidae","Cardinalidae","Sittidae","Prunellidae","Motacillidae","Emberizidae","Alaudidae","Cinclidae","Bombycillidae","bird"],"keywordsOther":["Aves","passerines","chaffinch","Passeriformes","morphometrics","morphology","Fringillidae","Ploceidae","Passeridae","Viduidae","Thraupidae","Estrildidae","Artamidae","Cardinalidae","Sittidae","Prunellidae","Motacillidae","Emberizidae","Alaudidae","Cinclidae","Bombycillidae","bird"],"keywordsTheme":["Evolutionary ecology"],"licence":"Open government licence","lineage":"The data were generated using a MechScan Macro 3D structured white light scanner. All scans were taken at the Natural History Museum, Akeman Street, Tring. Scans were processed using FlexScan3D and output as ply format files. Linear measurement data (see metadata file) were collected using digital callipers and additional data transcribed from specimen labels.","metadataDate":"2026-06-29T18:05:23.000Z","orcid":["https://orcid.org/0000-0002-1982-6051","https://orcid.org/0009-0003-6814-7279","https://orcid.org/0000-0003-4682-6257","https://orcid.org/0000-0003-4325-1275","https://orcid.org/0000-0003-4919-8655","https://orcid.org/0000-0002-4797-9143"],"organisation":["University of Sheffield","Natural History Museum, London","Natural History Museum","NERC EDS Environmental Information Data Centre"],"publicationDate":"2024-04-04T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e53b2c4f-fc2e-47a9-b5b7-cc3a59f790ac","10.5285/e53b2c4f-fc2e-47a9-b5b7-cc3a59f790ac","doi:10.5285/e53b2c4f-fc2e-47a9-b5b7-cc3a59f790ac"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield","Natural History Museum"],"ror":["https://ror.org/05krs5044","https://ror.org/039zvsn29","https://ror.org/04xw4m193"],"shortenedDescription":"The data consists of 3D surface scans of the beaks of 662 museum specimens of sixteen species (representing fifteen families of passerine birds: Fringillidae, Ploceidae, Passeridae, Viduidae, Thraupidae, Estrildidae, Artamidae, Cardinalidae, Sittidae, Prunellidae, Motacillidae,…","state":"published","title":"Three-dimensional surface scans of the beaks of specimens of Chaffinches and other passerine birds ","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","jenroe"]},{"authorAffiliation":["University of Sheffield"],"authorFamilyName":["Pain","Harrison"],"authorFullName":["Pain, C.","Harrison, E."],"authorGivenName":["Charly","E"],"authorOrcid":["https://orcid.org/0000-0002-2050-4631"],"authorRor":["https://ror.org/05krs5044"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset comprises phenotypic data of Rhizobium leguminosarum TRX19 clones evolved in the presence or absence of lytic phages. The clones assayed were isolated from populations of R. leguminosarum which had been evolved in lab media for twenty 73hr 'transfers'. Clones were assessed for their resistance to the ancestral phages (reduction in bacterial growth), their ability to form symbioses (plant biomass, nitrogen content and nodule counts) and traits associated with colonisation (biofilm production, swimming and swarming motility and gelatinase activity).\nThis experiment tests the hypothesis that evolution for phage resistance will drive the loss of symbiosis functions in rhizobia due to antagonistic pleiotropy.","documentType":"GEMINI_DOCUMENT","familyName":["Pain","Harrison"],"fullName":["Ellie Harrison","Pain, C.","Harrison, E."],"funder":["Natural Environment Research Council"],"givenName":["Charly","E"],"grant":["NE/P017584/1"],"identifier":"12f2f235-8e18-40c7-9113-acb85de9edd7","incomingCitationCount":0,"keyword":["Evolutionary ecology","Bacteriophage","Rhizobia","Antagonistic coevolution","symbiosis"],"keywordsOther":["Bacteriophage","Rhizobia","Antagonistic coevolution","symbiosis"],"keywordsTheme":["Evolutionary ecology"],"licence":"Non-Open government licence","lineage":"This dataset contains assay data from an evolution experiment assessing the impact of evolution with different lytic phages on the symbiotic performance of rhizobia. Briefly, strain Rhizobium leguminosarum TRX19 was evolved in lab media with 1 of 3 phages or in the absence of phage. Clones were isolated from evolved populations and screened for resistance, symbiotic function and phenotypes related to colonisation.\n\nMost of the data are raw values acquired from assays of the evolved clones. These include:\ngrowth with host plant - collecting plant biomass, nodule counts and nitrogen content via Isotope ratio mass spectrometry.\nPhenotypic analysis - biofilm production, swimming and swarming motility, growth rate in liquid broth and gelatinase assays\n\nPhage resistance data is presented as RBG - reduction in bacterial growth - generated as the ratio of the density (OD600) of cultures grown in a microtitre plate either with or without phages. The ratio of phage exposed to phage free bacterial growth indicates the severity of the infection.","metadataDate":"2026-06-29T16:19:39.000Z","orcid":["https://orcid.org/0000-0002-2050-4631"],"organisation":["University of Sheffield","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-03-04T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/12f2f235-8e18-40c7-9113-acb85de9edd7","10.5285/12f2f235-8e18-40c7-9113-acb85de9edd7","doi:10.5285/12f2f235-8e18-40c7-9113-acb85de9edd7"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset comprises phenotypic data of Rhizobium leguminosarum TRX19 clones evolved in the presence or absence of lytic phages. The clones assayed were isolated from populations of R. leguminosarum which had been evolved in lab media for twenty 73hr 'transfers'.…","state":"published","title":"Phenotypic traits of Rhizobium leguminosarum TRX19 clones evolved in the presence of different lytic bacteriophages","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","glenn"]},{"authorAffiliation":["University of Sheffield"],"authorFamilyName":["Wade","Seed","McLaren","Wood","Christin","Thompson","Rees","Osborne"],"authorFullName":["Wade, R.N.","Seed, P.","McLaren, E.","Wood, E.","Christin, P.A.","Thompson, K.","Rees, M.","Osborne, C.P."],"authorGivenName":["R.N.","P.","E.","P.A.","K.","M.","Colin P."],"authorOrcid":["https://orcid.org/0000-0001-9572-8990","https://orcid.org/0000-0002-2716-4721","https://orcid.org/0000-0002-8447-3766","https://orcid.org/0000-0001-6292-8734","https://orcid.org/0000-0001-8513-9906","https://orcid.org/0000-0002-7423-3718"],"authorRor":["https://ror.org/05krs5044"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)","Phylogenetic trees (.tre)"],"description":"This dataset contains sequential biomass harvests from a plant growth experiment carried out under controlled environmental conditions in Sheffield. The experiment was carried out in three parts in 2016 and 2017, and was designed to investigate differences in growth among grasses with the C3 and C4 photosynthetic pathways, and with annual and perennial life histories. Plants were harvested approximately weekly over a period of five weeks. \n\nThe data include information on the dry biomass of roots and leaves, and the numbers of roots, leaves and shoot branches. Also included is an independent dataset of leaf anatomical characteristics derived from herbarium specimens, which was used to test how mechanical support scales with leaf size. Finally, the data include the phylogenetic relationships among species, which were used in analyses. \n\nThe work was funded by NERC standard grant NE/N003152/1.","documentType":"GEMINI_DOCUMENT","familyName":["Wade","Seed","McLaren","Wood","Christin","Thompson","Rees","Osborne"],"fullName":["Wade, R.N.","Seed, P.","McLaren, E.","Wood, E.","Christin, P.A.","Thompson, K.","Rees, M.","Osborne, C.P."],"funder":["Natural Environment Research Council"],"givenName":["R.N.","P.","E.","P.A.","K.","M.","Colin P."],"grant":["NE/N003152/1"],"identifier":"cb0d7a37-45c5-4645-b5ef-ba097d92fc20","incomingCitationCount":0,"keyword":["plant growth","leaf anatomical characteristics","phylogenetic analysis","Poaceae","growth analysis ","plant biomass","leaf area","leaf","biomass","grass","photosynthesis"],"keywordsOther":["plant growth","leaf anatomical characteristics","phylogenetic analysis","Poaceae","growth analysis ","plant biomass","leaf area","leaf","biomass","grass","photosynthesis"],"licence":"Open government licence","lineage":"A phylogeny for the species involved in the growth analysis was reconstructed using a set of sequences from four regions of the chloroplast genome that have been widely used in grass phylogenetics: trnKmatK, rbcL, ndhF and trnLtrnF. These markers were retrieved from NCBI databases when available for the species used here, and were amplified and Sanger sequenced using published protocols for species that had never been analysed. Each marker was then aligned using MUSCLE v.3.8.31, and the alignment was manually verified. The four markers were then concatenated, and a time-calibrated phylogenetic tree was inferred using Beast v1.8.4. The GTR+G+I substitution model was used, and the speciation prior was set to a Yule process. A relaxed molecular clock with a log-normal distribution was used. The monophyly of each of the BOP and PACMAD clades was enforced to root the tree, and the split of the two clades was constrained by a normal distribution with a mean of 51.2 and a standard deviation of 0.0001. Two analyses were run for 10,000,000 generations, with sampling frequency of 1,000 generations. Convergence of the runs and effective sampling sizes were monitored with Tracer v1.6, and the burn-in period was set to 5,000,000. Posterior trees from the two analyses were combined, and median ages were mapped on the highest credibility tree, which was used for comparative analyses.","metadataDate":"2026-06-27T13:49:50.000Z","orcid":["https://orcid.org/0000-0001-9572-8990","https://orcid.org/0000-0002-2716-4721","https://orcid.org/0000-0002-8447-3766","https://orcid.org/0000-0001-6292-8734","https://orcid.org/0000-0001-8513-9906","https://orcid.org/0000-0002-7423-3718"],"organisation":["University of Sheffield","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2020-08-04T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/cb0d7a37-45c5-4645-b5ef-ba097d92fc20","10.5285/cb0d7a37-45c5-4645-b5ef-ba097d92fc20","doi:10.5285/cb0d7a37-45c5-4645-b5ef-ba097d92fc20"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains sequential biomass harvests from a plant growth experiment carried out under controlled environmental conditions in Sheffield. The experiment was carried out in three parts in 2016 and 2017, and was designed to investigate differences in growth…","state":"published","title":"Growth rates of grass species with contrasting photosynthetic pathways and life histories","version":1.0,"view":["public","shar1"]},{"authorAffiliation":["University of Sheffield\t","Universidad del Rosario"],"authorFamilyName":["Nadeau","Curran","Pardo-Diaz","Salazar","Linares"],"authorFullName":["Nadeau, N.J.","Curran, E.V.","Pardo-Diaz, C.","Salazar, C.","Linares, M."],"authorGivenName":["N.J","E.V.","C.","M."],"authorOrcid":["https://orcid.org/0000-0002-9319-921X","https://orcid.org/0000-0002-1739-4603","https://orcid.org/0000-0002-7259-1183","https://orcid.org/0000-0001-9217-6588"],"authorRor":["https://ror.org/05krs5044","https://ror.org/0108mwc04"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)","JPEG"],"description":"These data comprise collection records of Heliconius butterfly samples collected in the Chocó-Darien ecoregion between the Andes and the Pacific in Ecuador and Colombia, and the Pacific coast of the Darien region of Panama. Samples were collected over five sampling trips between 2014 and 2016. Data were collected for a study of clinal variation across this region in Heliconius erato and Heliconius melpomene, so focus on these two species. However, in most cases all observed Heliconius species were collected. \n\nThe dataset includes photographs of the wings of most of the specimens, which were used for an analysis of colour and pattern variation. Many of these individuals also have genomic information available for them on the European Nucleotide Archive (ENA) - the data includes ENA accession numbers.\n\nData were collected as part of a NERC fellowship project (NE/K008498/1).","documentType":"GEMINI_DOCUMENT","familyName":["Nadeau","Curran","Pardo-Diaz","Salazar","Linares"],"fullName":["Nadeau, N.","Nadeau, N.J.","Curran, E.V.","Pardo-Diaz, C.","Salazar, C.","Linares, M."],"funder":["Natural Environment Research Council"],"givenName":["Nicola","N.J","E.V.","C.","M."],"grant":["NE/K008498/1"],"identifier":"cb23c552-caee-4221-bdd3-83b172139ae1","incomingCitationCount":0,"keyword":["Chocó","Darien","Biodiversity","Environmental survey","Heliconius melpomene","Heliconius erato","Heliconius sapho","Heliconius sara","Heliconius eleuchia","Heliconius doris","Heliconius cydno","Heliconius hecale"],"keywordsOther":["Heliconius melpomene","Heliconius erato","Heliconius sapho","Heliconius sara","Heliconius eleuchia","Heliconius doris","Heliconius cydno","Heliconius hecale"],"keywordsPlace":["Chocó","Darien"],"keywordsTheme":["Biodiversity","Environmental survey"],"licence":"Open government licence","lineage":"Sampling was performed with hand nets, targeting all observed Heliconius individuals. The collection records do not represent a standardised sampling, as collecting effort (time and number of collectors) varied between days. Species identities were confirmed by at least two experts and in listed cases also by genetic information. Photographs were taken under standardised lighting conditions (see supporting documentation). ","locations":["POLYGON((-86.133 -4.739, -86.133 12.895, -68.906 12.895, -68.906 -4.739, -86.133 -4.739))"],"metadataDate":"2026-06-29T16:35:24.000Z","orcid":["https://orcid.org/0000-0002-9319-921X","https://orcid.org/0000-0002-1739-4603","https://orcid.org/0000-0002-7259-1183","https://orcid.org/0000-0001-9217-6588"],"organisation":["University of Sheffield","University of Sheffield\t","Universidad del Rosario","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2020-06-02T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/cb23c552-caee-4221-bdd3-83b172139ae1","10.5285/cb23c552-caee-4221-bdd3-83b172139ae1","doi:10.5285/cb23c552-caee-4221-bdd3-83b172139ae1"],"resourceType":"Dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/0108mwc04","https://ror.org/04xw4m193"],"shortenedDescription":"These data comprise collection records of Heliconius butterfly samples collected in the Chocó-Darien ecoregion between the Andes and the Pacific in Ecuador and Colombia, and the Pacific coast of the Darien region of Panama. Samples were collected over five sampling…","state":"published","supplementalDescription":["GBIF dataset","E.V. Curran, S. Stankowski, C. Pardo-Diaz, C. Salazar, M. Linares, N.J. Nadeau 2020. Müllerian mimicry of a quantitative trait despite contrasting levels of genomic divergence and selection. Molecular Ecology.","Heliconius EarthCape database "],"title":"Heliconius butterfly collection records in the Chocó-Darien Rainforest (Ecuador, Colombia, Panama) 2014-2016","topic":["0/Biodiversity/","0/Environmental survey/"],"version":1.0,"view":["public","phtr"]},{"authorAffiliation":["University of Sheffield"],"authorFamilyName":["Johnson","Leake","Read"],"authorFullName":["Johnson, D.","Leake, J.R.","Read, D.J."],"authorGivenName":["D.","J.R.","D.J."],"authorRor":["https://ror.org/05krs5044"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"These measurements of soil microbial biomass carbon, soil basal respiration rate and metabolic quotient were taken from an experiment set up at the University of Sheffield, using soil from the NERC Soil Biodiversity site at Sourhope.  \n\nThe work was part of the NERC Soil Biodiversity Thematic Programme, which was established in 1999 and was centred upon the intensive study of a large field experiment located at the Macaulay Land Use Research Institute (now the James Hutton Institute) farm at Sourhope in the Scottish Borders.  During the experiment, the site was monitored to assess changes in above-ground biomass production (productivity), species composition and relative abundance (diversity).","documentType":"GEMINI_DOCUMENT","familyName":["Johnson","Leake","Read","Sier"],"fullName":["Johnson, D.","Leake, J.R.","Read, D.J.","Sier, A."],"funder":["Natural Environment Research Council"],"givenName":["D.","J.R.","D.J.","Andy"],"identifier":"e300da0a-e0db-42b3-8986-56efef2985c2","incomingCitationCount":0,"keyword":["Soil","Soil microbial biomass carbon","Soil basal respiration rate","Metabolic quotient","soil"],"keywordsOther":["Soil microbial biomass carbon","Soil basal respiration rate","Metabolic quotient","soil"],"keywordsTheme":["Soil"],"licence":"Open government licence","lineage":"Data were collected as part of the NERC Soil Biodiversity Thematic Programme, which was established in 1999 and was centred upon the intensive study of a large field experiment located at the Macaulay Land Use Research Institute (MLURI) (now the James Hutton Institute) farm at Sourhope in the Scottish Borders (Grid reference: NT 8545 1963). These data were collected from an experimental facility using soil from the Sourhope site. Data were collected by students and staff from the University of Sheffield, following defined protocols.\n\nData from the programme were managed by the Centre for Ecology & Hydrology.","metadataDate":"2026-06-29T18:19:09.000Z","organisation":["University of Sheffield","UK Centre for Ecology & Hydrology","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"publicationDate":"2018-08-20T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e300da0a-e0db-42b3-8986-56efef2985c2","10.5285/e300da0a-e0db-42b3-8986-56efef2985c2","doi:10.5285/e300da0a-e0db-42b3-8986-56efef2985c2"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"shortenedDescription":"These measurements of soil microbial biomass carbon, soil basal respiration rate and metabolic quotient were taken from an experiment set up at the University of Sheffield, using soil from the NERC Soil Biodiversity site at Sourhope.  \n\nThe work was part of the NERC…","state":"published","supplementalDescription":["Johnson, D., Leake, J. R., & Read, D. J. (2005). Liming and nitrogen fertilization affects phosphatase activities, microbial biomass and mycorrhizal colonisation in upland grassland. Plant and Soil, 271(1-2), 157-164.","Usher, M.B., Sier, A.R., Hornung, M. and Millard, P., 2006. Understanding biological diversity in soil: the UK's Soil Biodiversity Research Programme. Applied Soil Ecology, 33(2), pp.101-113."],"supplementalName":["Soil Biodiversity website"],"title":"Microbial biomass measurements from an upland grassland liming experiment [NERC Soil Biodiversity Programme]","topic":["0/Soil/"],"version":1.0,"view":["public","clamw"]},{"authorAffiliation":["University of York","University of Exeter","University of Sheffield","University of Manchester"],"authorFamilyName":["Keane","Hartley","Phoenix","Taylor"],"authorFullName":["Keane, J.B.","Hartley, I.P.","Phoenix, G.K.","Taylor, C.R."],"authorGivenName":["J.B.","I.P.","G.K.","C.R."],"authorOrcid":["https://orcid.org/0000-0001-7614-8018","https://orcid.org/0000-0002-9183-6617","https://orcid.org/0000-0002-0911-8107","https://orcid.org/0000-0003-4399-7472"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains information on bio-available phosphorus and microbial biomass phosphorus from two UK grassland soils and how this is affected by elevated CO2 (eCO2). The soils are from naturally phosphorus limited grasslands in the Peak District National Park, in northern England. The grasslands were exposed to eCO2 of 600 ppm, and ambient CO2 controls were maintained at ca. 400 ppm for three growing seasons (2018-2020). Soils were sampled once each year in October, and underwent extraction (bio-available phosphorus) or chloroform-fumigation-extraction (microbial biomass phosphorus) with 0.5M NaHCO3. Concentrations of phosphorus in the extracts were determined by ICP-OES. ","documentType":"GEMINI_DOCUMENT","familyName":["Keane","Hartley","Phoenix","Taylor"],"fullName":["Keane, J.B.","Hartley, I.P.","Phoenix, G.K.","Taylor, C.R.","Keane, B."],"funder":["Natural Environment Research Council"],"givenName":["J.B.","I.P.","G.K.","C.R.","Ben"],"grant":["NE/N0100086/1","NE/N010132/1"],"identifier":"35921c93-2d9e-4e35-8de5-adbfc37641b4","incomingCitationCount":0,"keyword":["Soil","Climate and climate change","Soil microbial biomass","Elevated CO2","phosphorus","grassland","carbon dioxide","biomass","soil"],"keywordsOther":["Soil microbial biomass","Elevated CO2","phosphorus","grassland","carbon dioxide","biomass","soil"],"keywordsTheme":["Soil","Climate and climate change"],"licence":"Open government licence","lineage":"Soils were processed in the laboratories of the University of Sheffield and soil extracts were analysed at the University of Exeter. Internal standards were used to quantify phosphorus concentrations and soil microbial phosphorus values which were unrealistic (negative) were discarded. ","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"metadataDate":"2026-06-29T18:27:12.000Z","orcid":["https://orcid.org/0000-0001-7614-8018","https://orcid.org/0000-0002-9183-6617","https://orcid.org/0000-0002-0911-8107","https://orcid.org/0000-0003-4399-7472"],"organisation":["University of York","University of Exeter","University of Sheffield","University of Manchester","NERC EDS Environmental Information Data Centre"],"publicationDate":"2023-02-14T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/35921c93-2d9e-4e35-8de5-adbfc37641b4","10.5285/35921c93-2d9e-4e35-8de5-adbfc37641b4","doi:10.5285/35921c93-2d9e-4e35-8de5-adbfc37641b4"],"resourceType":"Dataset","rightsHolder":["University of Sheffield","University of Exeter"],"ror":["https://ror.org/04xw4m193","https://ror.org/05krs5044","https://ror.org/03yghzc09"],"shortenedDescription":"This dataset contains information on bio-available phosphorus and microbial biomass phosphorus from two UK grassland soils and how this is affected by elevated CO2 (eCO2). The soils are from naturally phosphorus limited grasslands in the Peak District National Park,…","state":"published","title":"Extractable phosphorus and microbial biomass phosphorus from two UK grassland soils under elevated CO2, 2018-2020","topic":["0/Soil/","0/Climate and climate change/"],"version":1.0,"view":["public","clwe"]},{"authorAffiliation":["University of Sheffield","British Trust for Ornithology (BTO)","University of Exeter","Cranfield University"],"authorFamilyName":["Norton","Mears","Warren","Siriwardena","Plummer","Turner","Hancock","Grafius","Evans"],"authorFullName":["Norton, B.A.","Mears, M.","Warren, P.H.","Siriwardena, G.M.","Plummer, K.E.","Turner, T.","Hancock, S.","Grafius, D.R.","Evans, K.L."],"authorGivenName":["B.A.","M.","P.H.","G.M.","K.E.","T.","S.","D.R.","K.L."],"authorOrcid":["https://orcid.org/0000-0001-9354-5904","https://orcid.org/0000-0002-9947-0349","https://orcid.org/0000-0002-0550-0886","https://orcid.org/0000-0003-2010-1186","https://orcid.org/0000-0003-0076-4505","https://orcid.org/0000-0001-5659-6964","https://orcid.org/0000-0002-6833-4993","https://orcid.org/0000-0002-3492-8072"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)","Shapefile"],"description":"The data describe a set of field surveys to assess conditions along public walking routes. A spectrum of urban forms was identified in the towns of Bedford, Luton and Milton Keynes, in the UK. A sample of these were surveyed on foot to measure biodiversity and environmental conditions during the day. These were supplemented with landscape-scale remotely sensed data characterising the surrounding landscape. ","documentType":"GEMINI_DOCUMENT","familyName":["Norton","Mears","Warren","Siriwardena","Plummer","Turner","Hancock","Grafius","Evans"],"fullName":["Norton, B.A.","Mears, M.","Warren, P.H.","Siriwardena, G.M.","Plummer, K.E.","Turner, T.","Hancock, S.","Grafius, D.R.","Evans, K.L.","Norton, B."],"funder":["Natural Environment Research Council"],"givenName":["B.A.","M.","P.H.","G.M.","K.E.","T.","S.","D.R.","K.L.","Briony"],"grant":["NE/J015369/1","NE/J015067/1","NE/J015237/1"],"identifier":"65b23264-2991-4ce2-83e7-7729a3947d75","incomingCitationCount":1,"keyword":["Luton","Bedford","United Kingdom","Bedfordshire","Buckinghamshire ","Milton Keyes","F3UES","BESS","UrbanBess","Particulate matter","Transect","Point count","Pollard walk","Walking route","Public right of way","temperature","tree","butterfly","bird","noise","atmospheric particulate","urban area"],"keywordsOther":["Particulate matter","Transect","Point count","Pollard walk","Walking route","Public right of way","temperature","tree","butterfly","bird","noise","atmospheric particulate","urban area"],"keywordsPlace":["Luton","Bedford","United Kingdom","Bedfordshire","Buckinghamshire ","Milton Keyes"],"keywordsProject":["F3UES","BESS","UrbanBess"],"licence":"Open government licence","lineage":"The data were collected between May and September 2014 in Bedford, Luton and Milton Keynes, UK. A subset of 500m x 500m survey tiles (n = 109) were selected from across the three towns using a stratified sampling design. Transect routes of 700m were established in each survey tile. Butterfly visual surveys (species and abundance) were undertaken along the routes using the Pollard Walk. Trees species and abundance were recorded at eight 10-m radius survey points at 100-m intervals along the transect. Bird surveys (two 10-minute counts) were conducted at four publicly accessible points in each tile. Environmental data were collected using instruments mounted on aluminium backpack frames, carried by a field surveyor. A particulate matter counter (Dylos DC1700) recorded continuously along the transect. A separate backpack carried an Optimus Red Sound Level Meter and two ibuttons. At the eight survey points along the route, plus two additional points per route, these recorded LAeq and temperature, respectively. Measures of the surrounding environment (road density, distance from urban edge, impervious surface cover, percent industrial land use, foliage height diversity, median patch size, residential garden cover, Index of Multiple Deprivation) were calculated at the tile level from a variety of spatial data sources. Field data were manually input or uploaded as appropriate and were compiled and error checked. Quality assurance was managed by the senior researcher carrying out the processing of each dataset, overseen by the principal and co-investigators of the project. Data were compiled and exported as a csv file for deposit into the EIDC, along with shapefiles of associated spatial data. ","locations":["POLYGON((-1.064 51.648, -1.064 52.453, 0.306 52.453, 0.306 51.648, -1.064 51.648))"],"metadataDate":"2026-06-29T18:30:04.000Z","orcid":["https://orcid.org/0000-0001-9354-5904","https://orcid.org/0000-0002-9947-0349","https://orcid.org/0000-0002-0550-0886","https://orcid.org/0000-0003-2010-1186","https://orcid.org/0000-0003-0076-4505","https://orcid.org/0000-0001-5659-6964","https://orcid.org/0000-0002-6833-4993","https://orcid.org/0000-0002-3492-8072"],"organisation":["University of Sheffield","British Trust for Ornithology (BTO)","University of Exeter","Cranfield University","NERC EDS Environmental Information Data Centre","British Trust for Ornithology"],"publicationDate":"2023-04-28T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/65b23264-2991-4ce2-83e7-7729a3947d75","10.5285/65b23264-2991-4ce2-83e7-7729a3947d75","doi:10.5285/65b23264-2991-4ce2-83e7-7729a3947d75"],"resourceType":"Dataset","rightsHolder":["University of Sheffield","Cranfield University","British Trust for Ornithology","University of Exeter"],"ror":["https://ror.org/04xw4m193","https://ror.org/05krs5044","https://ror.org/05cncd958","https://ror.org/03w54w620","https://ror.org/03yghzc09"],"shortenedDescription":"The data describe a set of field surveys to assess conditions along public walking routes. A spectrum of urban forms was identified in the towns of Bedford, Luton and Milton Keynes, in the UK. A sample of these were surveyed on foot to measure biodiversity and environmental…","state":"published","supplementalDescription":["ARSF Flight 2012_208 - for RG12_10: Hyperspectral Remote Sensing Measurements. Centre for Environmental Data Analysis, 22 February 2018. ","ARSF Flight 2012_249 - for RG12_10: Hyperspectral Remote Sensing Measurements. Centre for Environmental Data Analysis, 22 February 2018. ","ARSF Flight 2012_250 - for RG12_10: Hyperspectral Remote Sensing Measurements. Centre for Environmental Data Analysis, 22 February 2018.","ARSF Flight 2012_206b - For RG12_10: Hyperspectral Remote Sensing Measurements. Centre for Environmental Data Analysis, 22 February 2018. "],"supplementalName":["NERC Airborne Research and Survey Facility (2018)"],"title":"Biodiversity and environmental conditions along public walking routes in three UK towns (Bedford, Luton and Milton Keynes), 2014","version":1.0,"view":["public","clwe"]}],"rows":20,"url":"http://catalogue.ceh.ac.uk:443/eidc/documents?facet=rightsHolder%7C(University%20College%20Dublin%20OR%20Queen's%20University%20Belfast%20OR%20University%20of%20Sheffield)"}