Murine faecal metagenome data

This data is NERC-funded but not held by the EIDC. This data is archived in the National Center for Biotechnology Information (NCBI). Data consists of metagenomic datasets of faecal pellets collected from six-week old C57Bl/6 female mice orally infected with Citrobacter rodentium harbouring genetically modified antimicrobial resistance plasmids pC15-1a or RP4, respectively. Infections performed in May 2018. Faecal pellets collected prior to infection, and six days post-infection, and used to study changes in the methylation profile of organisms present in the intestine.

Publication date: 2021-07-30

Provenance & quality

DNA was extracted from faecal pellets using Qiagen Powersoil kit and subject to Single-molecule real-time sequencing. Three biological replicates per sample consisting of : two AMR plasmids (either pC15-1a or RP4) which were either lacked (N) or were modified to express the m6A methyltransferase gene Tsp509I (T).

Correspondence/contact details

Jennifer Ritchie
University of Surrey
 j.ritchie@surrey.ac.uk

Other contacts

Custodian
National Center for Biotechnology Information (NCBI)
 j.ritchie@surrey.ac.uk
Publisher
National Center for Biotechnology Information (NCBI)
 j.ritchie@surrey.ac.uk

Additional metadata

Topic categories
Health
Keywords
Citrobacter rodentium
Last updated
01 September 2021 09:42