Murine faecal metagenome data

This data is NERC-funded but not held by the EIDC. This data is archived in the National Center for Biotechnology Information (NCBI). Data consists of metagenomic datasets of faecal pellets collected from six-week old C57Bl/6 female mice orally infected with Citrobacter rodentium harbouring genetically modified antimicrobial resistance plasmids pC15-1a or RP4, respectively. Infections performed in May 2018. Faecal pellets collected prior to infection, and six days post-infection, and used to study changes in the methylation profile of organisms present in the intestine.

Publication date: 2021-07-30

Provenance & quality

DNA was extracted from faecal pellets using Qiagen Powersoil kit and subject to Single-molecule real-time sequencing. Three biological replicates per sample consisting of : two AMR plasmids (either pC15-1a or RP4) which were either lacked (N) or were modified to express the m6A methyltransferase gene Tsp509I (T).

Correspondence/contact details

Jennifer Ritchie
University of Surrey

Other contacts

National Center for Biotechnology Information (NCBI)
National Center for Biotechnology Information (NCBI)

Additional metadata

Topic categories
Citrobacter rodentium
Last updated
01 September 2021 09:42