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Data were collected to address the hypotheses of how the functional microbial community involved in carbon and nitrogen cycling changed seasonally and with geology. Data were collected as part of the project \"The role of lateral exchange in modulating the seaward flux of C, N, P\", funded under NERC's Macronutrients Cycles research programme. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J012106/1"],"identifier":"83f83414-f644-4684-ad5b-e1237fb12fc5","incomingCitationCount":0,"givenName":["Scott","G.","C.","D.","L."],"familyName":["Warren","Leung","Whitby","Nedwell","Dong"],"fullName":["Warren, S.","Leung, G.","Whitby, C.","Nedwell, D.","Dong, L."],"keyword":["acetate","flouride","formate","magnesium","potassium","sodium","archaea","methane production potential","methane oxidation potential","mineralisation","carbon cycle","nitrogen cycle","denitrification","nitrification","bacterium","calcium","ammonium","sulphate","phosphate","nitrite","nitrate","carbon"],"keywordsOther":["acetate","flouride","formate","magnesium","potassium","sodium","archaea","methane production potential","methane oxidation potential","mineralisation","carbon cycle","nitrogen cycle","denitrification","nitrification","bacterium","calcium","ammonium","sulphate","phosphate","nitrite","nitrate","carbon"],"licence":"Open government licence","lineage":"At each site, 9 soil samples were taken within a 40 x 40 m transect at 20 m intervals. From these samples, sub-samples were taken and stored differently depending on what analysis was done. All data were collected using standard methodologies as detailed in the supporting information.","locations":["POLYGON((-2.281 50.551, -2.281 51.297, -1.619 51.297, -1.619 50.551, -2.281 50.551))"],"organisation":["University of Essex","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/83f83414-f644-4684-ad5b-e1237fb12fc5","10.5285/83f83414-f644-4684-ad5b-e1237fb12fc5"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Essex"],"ror":["https://ror.org/02nkf1q06","https://ror.org/04xw4m193"],"state":"published","title":"Carbon and nitrogen cycling in chalk, greensand and clay soils over a seasonal cycle in the Hampshire Avon catchment","version":1.0,"view":["public","hajd"],"shortenedDescription":"Data on the carbon and nitrogen cycling in soils from different geologies within the Hampshire Avon catchment, UK. The dataset also includes functional gene data, anion and cation concentrations, methane production and oxidation potential, and nitrification, denitrification..."},{"publicationDate":"2017-12-01T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Butterfly Conservation"],"authorGivenName":["M.","D.","T.","I.","Z."],"authorFamilyName":["Botham","Roy","Brereton","Middlebrook","Randle"],"authorFullName":["Botham, M.","Roy, D.","Brereton, T.","Middlebrook, I.","Randle, Z."],"authorOrcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-5147-0331"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/05jg03a59"],"catalogue":"eidc","description":"Collated indices are a relative measure of butterfly abundance across monitored sites in the UK, calculated from data collected by the UK Butterfly Monitoring Scheme (UKBMS). Collated indices are calculated annually for each individual butterfly species that has been recorded on five or more sites in that year. Based on this criterion collated indices have been calculated for the entire UKBMS time series from 1976 to the current year for the majority of species. For some rarer species the time series starts in a later year due to lack of data. Collated indices are calculated using a statistical model that accounts for missing data. The number of sites for each species ranges from 5 to several hundred and varies from year to year. Since 2008 more than 1,000 sites have been monitored across the UK each year. Collated indices are calculated so that we can determine how butterfly populations are changing over time across the UK. This data can be used, for example, to determine where to target conservation efforts and to measure the condition of the UK countryside. \n\nButterflies are recognised as important indicators of biodiversity and environmental change (e.g. as official UK Biodiversity Indicators), and have been used in numerous research studies to understand the impacts of changes in climate and the extent and condition of habitats. \n\nAlthough the UK Centre for Ecology & Hydrology (UKCEH) and Butterfly Conservation (BC) are responsible for the calculation and interpretation of the Collated indices, the collection of the data used in their creation is ultimately reliant on a large volunteer community. The UKBMS is funded by a consortium of organisations led by the Joint Nature Conservation Committee (JNCC). \n\nThis dataset is updated annually and more recent versions of the UKBMS collated indices are available.","documentType":"GEMINI_DOCUMENT","identifier":"009334d6-ee33-43fc-a259-bf4d92fb69dc","incomingCitationCount":1,"givenName":["M.","D.","T.","I.","Z."],"familyName":["Botham","Roy","Brereton","Middlebrook","Randle"],"fullName":["Botham, M.","Roy, D.","Brereton, T.","Middlebrook, I.","Randle, Z."],"keyword":["England","Scotland","Wales","Northern Ireland","United Kingdom","Biodiversity","butterflies","lepidopteran"],"keywordsPlace":["England","Scotland","Wales","Northern Ireland","United Kingdom"],"keywordsTheme":["Biodiversity"],"keywordsOther":["butterflies","lepidopteran"],"licence":"Non-Open government licence","lineage":"Collated indices are produced using a series of statistical models on butterfly transect counts recorded by a volunteer network. These indices are a relative measure of each species' abundance across the UK compared to the baseline in 1976. The statistics are presented as log10 values. These values are centred around an arbitrary value of 2 as a mean for the time series in order to help show which years are below or above average (a technique used in other biodiversity indicators).","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-5147-0331"],"organisation":["UK Centre for Ecology & Hydrology","Butterfly Conservation","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre","Centre for Ecology & Hydrology"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/009334d6-ee33-43fc-a259-bf4d92fb69dc","10.5285/009334d6-ee33-43fc-a259-bf4d92fb69dc"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/05jg03a59","https://ror.org/04xw4m193"],"state":"published","supplementalName":["UKBMS website"],"title":"United Kingdom Butterfly Monitoring Scheme: collated indices 2016","topic":["0/Biodiversity/"],"version":1.0,"view":["public","hajd"],"shortenedDescription":"Collated indices are a relative measure of butterfly abundance across monitored sites in the UK, calculated from data collected by the UK Butterfly Monitoring Scheme (UKBMS). Collated indices are calculated annually for each individual butterfly species that has been..."},{"publicationDate":"2016-04-25T00:00:00.000+00:00","authorAffiliation":["University of Glasgow"],"authorGivenName":["L. E.","S.","J."],"authorFamilyName":["Vihermaa","Waldron","Newton"],"authorFullName":["Vihermaa, L.E.","Waldron, S.","Newton, J."],"authorOrcid":["https://orcid.org/0000-0001-6263-1252","https://orcid.org/0000-0002-2683-0761","https://orcid.org/0000-0001-7594-3693"],"authorRor":["https://ror.org/00vtgdb53"],"catalogue":"eidc","description":"Aquatic carbon (dissolved inorganic carbon (DIC), dissolved organic carbon (DOC) and particulate organic carbon and the carbon isotopic composition of DIC) and nutrients (calcium, magnesium, potassium, sodium, total soluble phosphorus and silica) in rainfall fractions (rainwater, throughfall, stemflow and overland flow) were sampled in the Western Amazonian basin. The samples were collected towards the end of a wet season April - May 2012. Rainfall and throughfall samples were collected in plastic buckets. Stemflow samples were collected using stemflow collection systems. Overland samples were collected using a a plastic pipe cut lengthways directing flow into a plastic bucket. Established standard methods were used to analyse the DIC, DOC and nutrients. These methods are outlined in the lineage. The samples were taken to understand the nutrient and carbon delivery in rainwater as well as leaching from tree canopies, stems and from the soil surface.\n\nThe data collection was carried out as part of the Natural Environment Research Council (NERC) funded Amazonica project (NE/F005482/1).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/F005482/1"],"identifier":"59bdb8f6-fb1f-418f-a53c-394f6c68a334","incomingCitationCount":0,"givenName":["Leena","L. E.","S.","J."],"familyName":["Vihermaa","Waldron","Newton"],"fullName":["Vihermaa, L.","Vihermaa, L.E.","Waldron, S.","Newton, J."],"keyword":["stemflow collectors","throughfall collectors","overland flow collectors","Thermo-Fisher-Scientific Gas Bench/Delta V Plus ","Thermalox TOC 2020","Atomic Absorption Spectrometry (Perkin Elmer Analyst 400)","Peru","Amazonia","Amazon","dissolved inorganic carbon","particulate organic carbon","DIC","DOC","POC","nutrient","dissolved organic carbon","organic carbon"],"keywordsInstrument":["stemflow collectors","throughfall collectors","overland flow collectors","Thermo-Fisher-Scientific Gas Bench/Delta V Plus ","Thermalox TOC 2020","Atomic Absorption Spectrometry (Perkin Elmer Analyst 400)"],"keywordsPlace":["Peru","Amazonia","Amazon"],"keywordsOther":["dissolved inorganic carbon","particulate organic carbon","DIC","DOC","POC","nutrient","dissolved organic carbon","organic carbon"],"licence":"Open government licence","lineage":"Throughfall and rain water were collected in 31.5 centimetre diameter plastic buckets covered with fine mesh to prevent litter entering. Four replicate throughfall collectors were deployed. Eight trees without visible defects were selected for stemflow collection in the same vicinity. The stemflow collection systems were made of flexible plastic piping cut in half, attached to the tree stems with minimal use of small nails and silicon sealant to close the gaps between the pipe edge and the tree stem to direct the stemflow into the collection system into a plastic collection bucket at the bottom of the tree. Rainwater was collect at an open area near approximately two kilometres away from the throughfall collectors as a suitable site could not be found close to the location of the throughfall and stemflow sites.\n\nA plastic pipe cut in half lengthways was placed under the stream bank to capture the overland flow and set at an angle to drain into a receiver bucket through a hole cut on the side of the bucket. The bucket was covered with a lid to prevent leaves and other litter falling in. All collectors were emptied after each rain event and when sufficient volume had been collected. Samples were taken for Dissolved Organic Carbon (DOC) and Particulate Organic Carbon (POC) analysis. On a small subset Dissolved Inorganic Carbon (DIC) samples were also collected. DIC samples were collected in pre-acidified (150 micro litre of concentrated phosphoric acid) evacuated 12 millilitre (ml) exetainers (Labco Ltd). Using a 10 ml syringe (rinsed with sample water 3 times) sample was injected into the exetainers and the needle withdrawn under water to prevent air ingress. On each sampling occasion triplicate exetainers were filled. Nutrient cations were measured in rain water and throughfall only.\n\nDOC samples were collected in polyethylene bottles and filtered through pre-furnaced (8 hours at 450 degrees Celsius) 0.7 micro metre glassfibre filter paper (Whatman GF/F) on the day of sampling and stored refrigerated in Nalgene bottles. Prior to the analysis aliquots of the samples were acidified to pH 3.9 and degassed to remove any DIC and analysed for DOC concentration by combustion (Thermalox TOC 2020, Analytical Sciences). The filter papers were air-dried and stored in air tight containers with indicating silica gel as a drying agent. POC concentration was measured by loss on ignition. In the laboratory the filter papers were first oven dried (3 hours at 105 degrees Celsius) to establish the dry weight which was measured on a five figure balance. Then the filter papers were furnace (16 hours at 375 degrees Celsius) and re-weighed. The weight loss was converted to mg C assuming percentage Organic Carbon is equal to 50 percent. \n\nAliquots of the filtered water sample were analysed for calcium (Ca) and magnesium (Mg) by Atomic Absorption Spectrometry (Perkin Elmer Analyst 400). Potassium (K) and sodium (Na) concentrations were determined by flame photometry (Sherwood Scientific M410). Colorimetric method was used to measure total dissolved phosphorus (totP) and silicon (Si). Phosphorus analysis is based on the formation of a phosphomolybdate complex which is then reduced using ascorbic acid to give blue colour that can be measured at 880 or 700 Nano metres (nm). Silica was converted to a coloured compound using the Heteropoly Blue Molybdosilicate method (American Public Health Association, 1999) and measured at 650 nm.\n\nData was entered into Excel spreadsheets and exported as comma separated files for ingestion into the Environmental Information Data Centre (EIDC)","locations":["POLYGON((-69.301 -12.841, -69.301 -12.828, -69.286 -12.828, -69.286 -12.841, -69.301 -12.841))"],"orcid":["https://orcid.org/0000-0001-6263-1252","https://orcid.org/0000-0002-2683-0761","https://orcid.org/0000-0001-7594-3693"],"organisation":["University of Glasgow","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/59bdb8f6-fb1f-418f-a53c-394f6c68a334","10.5285/59bdb8f6-fb1f-418f-a53c-394f6c68a334"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00vtgdb53","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Waldron, S., E. M. Scott, L. E. Vihermaa, and J. Newton (2014), Quantifying precision and accuracy of measurements of dissolved inorganic carbon stable isotopic composition using continuous-flow isotope-ratio mass spectrometry, Rapid. Commun. Mass Sp., 28(10), 1117-1126."],"title":"Carbon and nutrient data for rainfall fractions in the Peruvian Amazon","version":1.0,"view":["public","danor"],"shortenedDescription":"Aquatic carbon (dissolved inorganic carbon (DIC), dissolved organic carbon (DOC) and particulate organic carbon and the carbon isotopic composition of DIC) and nutrients (calcium, magnesium, potassium, sodium, total soluble phosphorus and silica) in rainfall fractions..."},{"publicationDate":"2015-06-30T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","University of Glasgow","Lancaster University"],"authorGivenName":["H.","S.","J.","N."],"authorFamilyName":["Richardson","Waldron","Whitaker","Ostle"],"authorFullName":["Richardson, H.","Waldron, S.","Whitaker, J.","Ostle, N."],"authorOrcid":["https://orcid.org/0000-0001-8824-471X","https://orcid.org/0000-0003-3263-3702"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/00vtgdb53","https://ror.org/04f2nsd36"],"catalogue":"eidc","description":"Data from two laboratory-based studies, both investigating the interactive effects of abiotic and biotic controls on peatland carbon cycling. Data comprise carbon dioxide and methane fluxes in peat, litter mass remaining and respiration rate data from litter bags on peat mesocosms, and biochemical and physical properties of peat. Data was collected in from the first laboratory study, which focused on identifying the interactive effects of small-scale temperature change, water table level and plant functional type legacy effects in peat on carbon dioxide (CO2) and methane (CH4) fluxes from peat collected from Black Law Wind Farm, Lanarkshire, Scotland. Data includes CO2 and CH4 fluxes from peat mesocosms (sampled in May 2011), measured six times from October 2011 to September 2012. Data collected from the second laboratory study between October 2012 and October 2013 focused on identifying the interactive effects of small-scale temperature change and plant functional type legacy effects in peat and litter on decomposition in peatlands, and included litter mass remaining (% of initial litter mass) and respiration rate data from litter bags on peat mesocosms. Peat and litter used in this laboratory study were collected from blanket bog peatland at Black Law Wind Farm, Lanarkshire, Scotland in October 2012.\n\nPeat and litter used in both studies were analysed for their biochemical and physical properties. Biochemical and physical properties data for the first laboratory study includes bulk density, pH, total carbon (C) content, total nitrogen (N) content, ratio of C to N, C stock, N stock, total phospholipid fatty acids (PLFAs), total fungal PLFAs, total bacterial PLFAs, ratio of fungal to bacterial PLFAs, total gram-positive bacterial PLFAs, total gram-negative bacterial PLFAs and ratio of gram-positive to gram-negative bacterial PLFAs of peat. Biochemical and physical properties data for the second laboratory study include total carbon (C) content, total nitrogen (N) content and the ratio of C to N for peat and litter. Biochemical and physical data properties for peat and litter were used to better understand the effects of plant functional type legacy on greenhouse gas fluxes and litter decomposition. ","documentType":"GEMINI_DOCUMENT","identifier":"e15fbbab-1cdd-4509-81a3-aa050e927dd0","incomingCitationCount":0,"givenName":["Jeanette","H.","S.","J.","N."],"familyName":["Whitaker","Richardson","Waldron","Ostle"],"fullName":["Whitaker, J.","Richardson, H.","Waldron, S.","Ostle, N."],"keyword":["Black Law Wind Farm","South Lanarkshire","Scotland","greenhouse gas flux","peatland","carbon","flux","GHG","GC","soil biological and chemical properties","peat","greenhouse gas","litter"],"keywordsPlace":["Black Law Wind Farm","South Lanarkshire","Scotland"],"keywordsOther":["greenhouse gas flux","peatland","carbon","flux","GHG","GC","soil biological and chemical properties","peat","greenhouse gas","litter"],"licence":"Open government licence","lineage":"Data from two laboratory-based studies, both investigating the interactive effects of abiotic and biotic controls on peatland carbon cycling. Data was collected from the first laboratory study, which focused on identifying the interactive effects of small-scale temperature change, water table level and plant functional type legacy effects in peat on carbon dioxide (CO2) and methane (CH4) fluxes from peat collected from Black Law Wind Farm, Lanarkshire, Scotland. Data includes CO2 and CH4 fluxes from peat mesocosms, measured six times from October 2011 to September 2012. Data collected from the second laboratory study, which focused on identifying the interactive effects of small-scale temperature change and plant functional type legacy effects in peat and litter on decomposition in peatlands, included litter mass remaining (percent of initial litter mass) and respiration rate data from litter bags on peat mesocosms. Peat and litter used in this laboratory study were also collected from blanket bog peatland at Black Law Wind Farm, Lanarkshire, Scotland. Peat and litter used in both studies were analysed for their biochemical and physical properties. Biochemical and physical properties data for the first laboratory study includes bulk density, pH, total carbon (C) content, total nitrogen (N) content, ratio of C to N, C stock, N stock, total phospholipid fatty acids (PLFAs), total fungal PLFAs, total bacterial PLFAs, ratio of fungal to bacterial PLFAs, total gram-positive bacterial PLFAs, total gram-negative bacterial PLFAs and ratio of gram-positive to gram-negative bacterial PLFAs of peat. Biochemical and physical properties data for the second laboratory study include total carbon (C) content, total nitrogen (N) content and the ratio of C to N for peat and litter. Biochemical and physical data properties for peat and litter were used to better understand the effects of plant functional type legacy on greenhouse gas fluxes and litter decomposition. ","orcid":["https://orcid.org/0000-0001-8824-471X","https://orcid.org/0000-0003-3263-3702"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","University of Glasgow","Lancaster University","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["1434459775402","https://catalogue.ceh.ac.uk/id/e15fbbab-1cdd-4509-81a3-aa050e927dd0","10.5285/e15fbbab-1cdd-4509-81a3-aa050e927dd0"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","ror":["https://ror.org/00pggkr55","https://ror.org/00vtgdb53","https://ror.org/04f2nsd36","https://ror.org/04xw4m193"],"state":"published","title":"Measures of peatland carbon cycling from peat mesocosm incubation experiments","version":1.0,"view":["public","jgar"],"shortenedDescription":"Data from two laboratory-based studies, both investigating the interactive effects of abiotic and biotic controls on peatland carbon cycling. Data comprise carbon dioxide and methane fluxes in peat, litter mass remaining and respiration rate data from litter bags on..."},{"publicationDate":"2020-02-17T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Ricardo Energy & Environment"],"authorGivenName":["W.J.","C.","P.E.","J.R."],"authorFamilyName":["Bealey","Martin Hernandez","Levy","Stedman"],"authorFullName":["Bealey, W.J.","Martin Hernandez, C.","Levy, P.E.","Stedman, J.R."],"authorOrcid":["https://orcid.org/0000-0003-3708-5864","https://orcid.org/0000-0002-8505-1901"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset provides deposition values of sulphur and nitrogen deposition and concentration values for ammonia (NH3), sulphur dioxide (SO2) and nitrogen oxide (NOx) on the UK nature conservation protected sites, averaged over the years 2015 to 2017. The dataset also includes calculated minimum, maximum and gridded average values for each site. Protected nature sites covered are:\n(i) Special Areas of Conservation (SAC)\n(ii) Special Protection Areas (SPA)\n(iii) Sites of Special Scientific Interest (SSSI).\n\nThe data consist of values of nitrogen and acid deposition, and concentrations of ammonia (NH3) based on the Concentration Based Estimated Deposition (CBED), and concentrations of NOX and SO2 using the Pollution Climate Mapping (PCM) model.\n\nNitrogen and acid deposition data is also given for specific habitat types including:\n(i) moorland/short vegetation everywhere,\n(ii) forest everywhere, and\n(iii) the grid square average over multiple land cover types (i.e. arable, grassland, forest, moorland, urban)\n\nThese habitat-specific data are recommended for use with critical loads for the calculation of critical load exceedances using the relevant deposition/habitat type.","documentType":"GEMINI_DOCUMENT","identifier":"5537065d-4166-438a-be4f-52f59875a6e1","incomingCitationCount":0,"givenName":["Bill","W.J.","C.","P.E.","J.R."],"familyName":["Bealey","Martin Hernandez","Levy","Stedman"],"fullName":["Bealey, B.","Bealey, W.J.","Martin Hernandez, C.","Levy, P.E.","Stedman, J.R."],"keyword":["Pollution","source attribution","nitrogen deposition","natura 2000","ecosystem impacts from atmospheric pollution","critical load","acid deposition","pollutant deposition","atmospheric pollution"],"keywordsTheme":["Pollution"],"keywordsOther":["source attribution","nitrogen deposition","natura 2000","ecosystem impacts from atmospheric pollution","critical load","acid deposition","pollutant deposition","atmospheric pollution"],"licence":"Open government licence","lineage":"The Air Pollution Information System (APIS), through the 'Site Relevant Critical Loads' tool, provides critical loads for acidity and nitrogen and critical levels for ammonia, sulphur dioxide and nitrogen oxides for designated features within every SAC, SPA or A/SSSI in the UK. In addition, deposition and concentration data for nitrogen and sulphur pollutants are provided at each site to give an estimate of critical load/level exceedance.\n\nThe data provided is based on pollutant deposition gridded maps for nitrogen and acid deposition and concentration maps of ammonia, nitrogen oxides and sulphur, which are overlayed to a GIS shape file of site boundaries in the UK (e.g. SAC, SPA, SSSI). These gridded maps were then clipped to provide the pollutant values for each grid square including the area of the clipped grid. The resulting data was then queried to generate site statistics in the form of a minimum, maximum and area weighted average values for each of the pollutants.\n\nFor nitrogen and acid deposition values and ammonia concentrations, 3 year average pollutant maps were used at a resolution of 5 x 5 km from the CBED model for the years 2015-2017. For nitrogen dioxide and sulphur dioxide concentrations the 1 x 1 km PCM model was used based on the 3 year average (2015-2017). Deposition values are generated for specific habitat types (forest and semi-natural) to be used in critical load exceedance calculations.\nThe full methodology is available in the contextual metadata linked to this record.\n\nThe work of APIS is jointly funded between the Centre for Ecology & Hydrology and the UK pollution and conservation agencies including Natural Resources Wales (NRW), the Environment Agency, Northern Ireland Environment Agency, Natural England, the Joint Nature Conservation Committee (JNCC), the Scottish Environment Protection Agency (SEPA), and Scottish Natural Heritage (SNH).","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0003-3708-5864","https://orcid.org/0000-0002-8505-1901"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","Ricardo Energy & Environment","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/5537065d-4166-438a-be4f-52f59875a6e1","10.5285/5537065d-4166-438a-be4f-52f59875a6e1"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["APIS Site Relevant Critical Loads and Source Attribution"],"supplementalName":["APIS website"],"title":"Deposition and concentration of nitrogen and sulphur for protected sites in the UK (2015-2017)","topic":["0/Pollution/"],"version":1.0,"view":["public","crimar"],"shortenedDescription":"This dataset provides deposition values of sulphur and nitrogen deposition and concentration values for ammonia (NH3), sulphur dioxide (SO2) and nitrogen oxide (NOx) on the UK nature conservation protected sites, averaged over the years 2015 to 2017. The dataset also..."},{"publicationDate":"2022-09-21T00:00:00.000+00:00","authorAffiliation":["University of Leeds"],"authorGivenName":["C.S."],"authorFamilyName":["Moody"],"authorFullName":["Moody, C.S."],"authorOrcid":["https://orcid.org/0000-0002-0371-7416"],"catalogue":"eidc","description":"The data contains site characteristics (water body type, elevation, catchment area) and water chemistry data (pH, dissolved and particulate organic carbon concentrations (DOC and POC)). The composition of DOM extracted by different methods was analysed by elemental analysis; there are data for carbon, hydrogen and nitrogen content. \nThe dataset result from an experiment to determine the reliability of various methods to extract dissolved organic matter (DOM) from freshwaters in the UK. \n\n\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R013365/1"],"identifier":"3c77e7bf-78a0-433c-b260-b630e9a36cc0","incomingCitationCount":0,"givenName":["C.S.","Cat"],"familyName":["Moody"],"fullName":["Moody, C.S.","Moody, C."],"keyword":["Freshwater","DOM","Water Chemistry","Extraction"],"keywordsOther":["Freshwater","DOM","Water Chemistry","Extraction"],"licence":"Open government licence","lineage":"Water samples were collected from sites across the UK and analysed in 2018 and 2019. Laboratory analysis took place as soon as possible after collection. Data were quality checked and analysed in 2019 and 2020. ","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-0371-7416"],"organisation":["University of Leeds","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/3c77e7bf-78a0-433c-b260-b630e9a36cc0","10.5285/3c77e7bf-78a0-433c-b260-b630e9a36cc0"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Leeds"],"ror":["https://ror.org/04xw4m193","https://ror.org/024mrxd33"],"state":"published","supplementalDescription":["Moody, C.S. (2020), A comparison of methods for the extraction of dissolved organic matter from freshwaters. Water Research, 184, 116114"],"title":"Water chemistry data and elemental content of dissolved organic matter extracted from freshwaters in the UK, 2018-19","version":1.0,"view":["public","clwe"],"shortenedDescription":"The data contains site characteristics (water body type, elevation, catchment area) and water chemistry data (pH, dissolved and particulate organic carbon concentrations (DOC and POC)). The composition of DOM extracted by different methods was analysed by elemental..."},{"publicationDate":"2014-07-23T00:00:00.000+00:00","catalogue":"eidc","description":"This is a web map service (WMS) for the Land Cover Map 2007 (LCM2007), percentage cover at 1km for aggregate classes. Land Cover Map 2007 (LCM2007) is a parcel-based thematic classification of satellite image data covering the entire United Kingdom. The map updates and upgrades the Land Cover Map of Great Britain (LCMGB) 1990 and LCM2000. Like the earlier 1990 and 2000 products, LCM2007 is derived from a computer classification of satellite scenes obtained mainly from Landsat, IRS and SPOT sensors. It also covers Northern Ireland and incorporates information derived from other ancillary datasets. LCM2007 was classified using a hierarchical nomenclature corresponding to Joint Nature Conservation Committee (JNCC) Broad Habitats, which encompasses the entire range of UK habitats. In addition, it recorded further detail where possible , incorporating land cover classes sought by other users. LCM2007 is produced in both vector and raster formats, with a number of different versions containing varying levels of detail and at different spatial resolutions. This WMS is for Great Britain only.","documentType":"GEMINI_DOCUMENT","identifier":"5d324260-22d9-11e4-8c21-0800200c9a66","incomingCitationCount":0,"givenName":["Dan"],"familyName":["Morton"],"fullName":["Morton, D."],"keyword":["Great Britain","Land cover","Mapping","infoMapAccessService"],"keywordsPlace":["Great Britain"],"keywordsTheme":["Land cover","Mapping"],"keywordsOther":["infoMapAccessService"],"licence":"Non-Open government licence","lineage":"LCM2007 uses a spatial framework based on OS MasterMap (R). MasterMap was generalised to remove unnecessary detail, then the framework was segmented according to the underlying satellite data to split areas of non-uniform landscape. The data was classified according to a parcel-based supervised maximum likelihood classification procedure. The raster products are derived from the vector products. ","locations":["POLYGON((-9.23 49.84, -9.23 60.85, 2.69 60.85, 2.69 49.84, -9.23 49.84))"],"organisation":["Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Map (web service)","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/5d324260-22d9-11e4-8c21-0800200c9a66"],"resourceStatus":"Available","resourceType":"Service","ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Land Cover Map 2007 (1km percentage aggregate class, GB) Web Map Service v1.2","topic":["0/Land cover/","0/Mapping/"],"version":1.0,"view":["public","phtr"],"shortenedDescription":"This is a web map service (WMS) for the Land Cover Map 2007 (LCM2007), percentage cover at 1km for aggregate classes. Land Cover Map 2007 (LCM2007) is a parcel-based thematic classification of satellite image data covering the entire United Kingdom. The map updates..."},{"publicationDate":"2020-03-02T00:00:00.000+00:00","catalogue":"eidc","description":"Improving Wellbeing through Urban Nature (IWUN) was a three year RCUK-funded research project led by the Department of Landscape Architecture at the University of Sheffield, focusing on addressing gaps in the evidence base concerning the relationship between human health and wellbeing and urban natural environments and utilising the known benefits of connecting and interacting with nature more effectively in local service provision.  IWUN was an inter- and trans-disciplinary project involving three universities (University of Sheffield, University of Derby and Herriot Watt) and external non-academic partners (The Wildlife Trusts, Centre for Sustainable Healthcare and Sheffield Flourish).\n\nDifferent aspects of health and wellbeing were considered but the overall focus was on the role of urban natural environments in sustaining mental health. IWUN had four work packages addressing different aspects of these broad objectives within the city of Sheffield as a case study:\n- The first was an epidemiological work package addressing population level relationships between health and the quantity, quality and distribution of natural environments across the city\n- The second was a qualitative work package that explored cultures and values of nature and wellbeing across diverse user groups across the city\n- The third used a specially designed smartphone app, Shmapped, to understand the ways in which people were using green space across the city and whether connecting with nature through an app could help support mental health wellbeing\n- The fourth and final work package worked with local health and greenspace stakeholders to find out which green space interventions they thought were most likely to benefit people’s health and what the costs and benefits of implementing these interventions would be\n\nThe IWUN findings are numerous and complex and are being written up in a series of published papers, full details of which can be found here: http://iwun.uk/publications/. The papers deal with findings from individual workpackages, as well as cross cutting findings across the whole project. In addition to the peer-reviewed papers a series of eight policy and practice briefs and an Atlas of Sheffield’s Green Spaces have been published in order to communicate the findings to a wider audience. ","documentType":"GEMINI_DOCUMENT","identifier":"0d864b04-3085-41fb-9447-c3d385207ce2","incomingCitationCount":0,"givenName":["Anna"],"familyName":["Jorgensen"],"fullName":["Jorgensen, A."],"licence":"Non-Open government licence","lineage":"See individual dataset records for details.","locations":["POLYGON((-6.452 49.864, -6.452 55.812, 1.768 55.812, 1.768 49.864, -6.452 49.864))"],"organisation":["The University of Sheffield","NERC EDS Environmental Information Data Centre"],"recordType":"Data collection","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0d864b04-3085-41fb-9447-c3d385207ce2"],"resourceStatus":"Unknown","resourceType":"Aggregation","ror":["https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Information about the research and publications"],"supplementalName":["IWUN website"],"title":"Data from Improving wellbeing through urban nature [IWUN] project","version":1.0,"view":["public","hajd"],"shortenedDescription":"Improving Wellbeing through Urban Nature (IWUN) was a three year RCUK-funded research project led by the Department of Landscape Architecture at the University of Sheffield, focusing on addressing gaps in the evidence base concerning the relationship between human health..."},{"publicationDate":"2023-09-22T00:00:00.000+00:00","authorAffiliation":["University of Jyväskylä, Finland","University of Stirling","UK Centre for Ecology & Hydrology"],"authorGivenName":["P.","I.","D.A. ","M.","L.","J.","S."],"authorFamilyName":["Salmi","Pölönen","Beckmann","Calderini","May","Olszewska","Perozzi","Pääkkönen","Taipale","Hunter"],"authorFullName":["Salmi, P.","Pölönen, I.","Beckmann, D.A.","Calderini, M.","May, L.","Olszewska, J.","Perozzi, L.","Pääkkönen, S.","Taipale, S.","Hunter, P."],"authorOrcid":["https://orcid.org/0000-0003-3247-2259","https://orcid.org/0000-0002-5129-7364","https://orcid.org/0009-0007-0457-6428","https://orcid.org/0000-0003-2532-3167","https://orcid.org/0000-0003-3385-9973","https://orcid.org/0000-0002-4910-2206","https://orcid.org/0000-0002-2548-0835","https://orcid.org/0000-0001-7510-7337","https://orcid.org/0000-0001-7269-795X"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset describes the concentrations of photosynthetic pigments (Chlorophylls, carotenoids and phycocyanin) measured by HPLC and spectrophotometry in water samples of 20 lochs in Scotland. Data were collected between May and June 2022.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Academy of Finland","European Union","Stirling and Clackmannanshire ","Scottish Government"],"grant":["NE/R016429/1","321780","776480 "],"identifier":"7794cbfa-1d74-4885-b303-8c20f4608728","incomingCitationCount":0,"givenName":["P.","I.","D.A. ","M.","L.","J.","S."],"familyName":["Salmi","Pölönen","Beckmann","Calderini","May","Olszewska","Perozzi","Pääkkönen","Taipale","Hunter"],"fullName":["Salmi, P.","Pölönen, I.","Beckmann, D.A.","Calderini, M.","May, L.","Olszewska, J.","Perozzi, L.","Pääkkönen, S.","Taipale, S.","Hunter, P."],"keyword":["carotenoid","phycocyanin","phytoplankton","chlorophyll","water quality","spectrophotometry","lake"],"keywordsOther":["carotenoid","phycocyanin","phytoplankton","chlorophyll","water quality","spectrophotometry","lake"],"licence":"Open government licence","lineage":"Water samples were collected by grab sampling from the surface water layers. Sampling sites were located along the lake shores, except at Loch Leven, where boats were used to collect samples from the open water.\nChlorophylls and carotenoids were determined with High Performance Liquid Chromatography (HPLC). Phycocyanin was determined by spectrophotometry.\nSamples for HPLC and spectrophotometry were collected on glass fibre filters (GF/F Whatman or Fisherbrand MF300) so that the filters were not clogged but were notably coloured.\nThe HPLC sample filters were folded to enclose the samples and wrapped in aluminium foil before flash-freezing them by submerging them in liquid nitrogen and then storing them at -80 °C. Sample filters for spectrophotometry were stored at -20 °C.\nFilters were shipped on dry-ice to the analysis laboratories where they were stored at -80 °C (HPLC) and 20 °C (spectrophotometry) and analysed within 4-6 months of collection. Details of the HPLC protocol and spectrophotometry are given in data_descriptor.docx.\n","locations":["POLYGON((-5.164 55.925, -5.164 56.759, -2.263 56.759, -2.263 55.925, -5.164 55.925))"],"orcid":["https://orcid.org/0000-0003-3247-2259","https://orcid.org/0000-0002-5129-7364","https://orcid.org/0009-0007-0457-6428","https://orcid.org/0000-0003-2532-3167","https://orcid.org/0000-0003-3385-9973","https://orcid.org/0000-0002-4910-2206","https://orcid.org/0000-0002-2548-0835","https://orcid.org/0000-0001-7510-7337","https://orcid.org/0000-0001-7269-795X"],"organisation":["University of Jyväskylä, Finland","University of Stirling","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","University of Jyväskylä"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7794cbfa-1d74-4885-b303-8c20f4608728","10.5285/7794cbfa-1d74-4885-b303-8c20f4608728"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Jyväskylä","UK Centre for Ecology & Hydrology","University of Stirling"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Photosynthetic pigments in water samples from 20 lochs in Scotland, May-June 2022","version":1.0,"view":["public","glenn"],"shortenedDescription":"This dataset describes the concentrations of photosynthetic pigments (Chlorophylls, carotenoids and phycocyanin) measured by HPLC and spectrophotometry in water samples of 20 lochs in Scotland. Data were collected between May and June 2022."},{"publicationDate":"2019-04-24T00:00:00.000+00:00","authorAffiliation":["Rothamsted Research","Centre for Ecology & Hydrology","Bangor University"],"authorGivenName":["A.","M.","I.M.","P.R.","R.I.","T.I.","A.M.","T.H.","R.","A.R.","D.R.","D.L.","N.J.","U.","S."],"authorFamilyName":["Blaud","Abadie","Clark","Hirsch","Griffiths","Goodall","Carswell","Misselbrook","Shaw","Sánchez-Rodríguez","Chadwick","Jones","Cowan","Skiba","Reinsch"],"authorFullName":["Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Griffiths, R.I.","Goodall, T.I.","Carswell, A.M.","Misselbrook, T.H.","Shaw, R.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L.","Cowan, N.J.","Skiba, U.","Reinsch, S."],"authorOrcid":["https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0001-8659-6092","https://orcid.org/0000-0003-4649-0677"],"authorRor":["https://ror.org/0347fy350","https://ror.org/00pggkr55","https://ror.org/006jb1a24"],"catalogue":"eidc","description":"The data nitrogen gene data, soil biodiversity indices and microbial community composition, for three soil depths (0-15, 15-30 and 30-60 cm) from a three-cut silage plot trial located at three grassland sites within the UK collected between April 2016 and October 2016. The sites were Rothamsted Research at North Wyke in Devon, Bangor University at Henfaes Research Station in North Wales and Easter Bush in Scotland.\n\nAt each site measurements were taken from 16 plots, organised within a randomised complete block design where 4 plots did not receive fertilizers (controls), 4 plots received urea only, 4 plots received urea and urea-inhibitors, and 4 plots received ammonium-nitrate (Nitram). Fertiliser was applied three times and three cuts were performed, all parameters measured were following a fertiliser application. Samples were taken before the fertilizer additions, at peak growth and before the last silage cut.\n\nSoil chemical parameters were: soil nitrate, ammonium, dissolved organic carbon and nitrogen, amino acids and peptides, soil organic matter content as loss-on-ignition, pH, sodium, potassium, calcium, magnesium, permanganate oxdisable carbon citric acid extractable phosphorous, Olsen-P and total carbon, nitrogen and phosphorus. Soil biological measure were: microbial biomass carbon and nitrogen. Soil physico-chemical parameters were measured on the same samples and are available in a related dataset measured on the same soil samples and are presented in a separate dataset in the project data series (https://catalogue.ceh.ac.uk/id/7a87dde4-b54e-49b0-8751-1d59e8aebb90).\n\nMeasurements were undertaken by members of staff from the Centre of Ecology & Hydrology (Bangor, Edinburgh, Lancaster, Wallingford), Bangor University, School of Environment, Natural Resources & Geography and Rothamsted Research, Sustainable Agricultural Sciences, North Wyke.\n\nData was collected for the Newton Fund project \"UK-China Virtual Joint Centre for Improved Nitrogen Agronomy\". Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC -  Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"59f81d41-a789-4c5c-8ab8-36baa7ac2c55","incomingCitationCount":0,"givenName":["S.","A.","M.","I.M.","P.R.","R.I.","T.I.","A.M.","T.H.","R.","A.R.","D.R.","D.L.","N.J.","U."],"familyName":["Reinsch","Blaud","Abadie","Clark","Hirsch","Griffiths","Goodall","Carswell","Misselbrook","Shaw","Sánchez-Rodríguez","Chadwick","Jones","Cowan","Skiba"],"fullName":["Reinsch, S.","Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Griffiths, R.I.","Goodall, T.I.","Carswell, A.M.","Misselbrook, T.H.","Shaw, R.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L.","Cowan, N.J.","Skiba, U."],"keyword":["CINAg","Centre for improved Nitrogen agronomy","Soil","Urease Inhibitor","Soil properties","grassland","nitrogen","fertiliser","soil"],"keywordsProject":["CINAg","Centre for improved Nitrogen agronomy"],"keywordsTheme":["Soil"],"keywordsOther":["Urease Inhibitor","Soil properties","grassland","nitrogen","fertiliser","soil"],"licence":"Open government licence","lineage":"Soil samples were taken by members of the sites. At North Wyke and Henfaes farm, staff from CEH Bangor helped taking the samples. Two sets of soil cores were taken. One was sent in cooling boxes on ice to CEH Bangor for measuring soil physicochemical properties. The second set was sent to Rothamsted Research Harpenden for the analysis of nitrogen genes and microbial community composition (related dataset). The topsoil 0-15 cm were taken with the same type of corer across the sites, samples below 15 cm soil depth were sampled with corers available at the sites. Samples were wet sieved to 5 mm by staff from Bangor University and CEH Bangor. Subsamples of these were analysed for physicochemical and biological parameters.\n\nDNA extractions were performed by Rothamsted Research Harpenden. Extracts were analyzed for nitrogen genes at Rothamsted Research in Harpenden. Extracts were also sent to CEH Wallingford for analyses of Operational Taxonomic Units (OTU's).\n\nSoil community DNA was extracted from 0.25 gams soil using the MoBio DNA PowerSoil DNA isolation kit (Mo Bio Laboratories, Inc. Carlsbad, CA), following manufacturer’s protocol. Extracted DNA was quantified by fluorometer Qubit® 2.0 dsDNA BR Assay Kit (Thermo Fisher Scientific) and quality checked by nanodrop (Thermo Fisher Scientific).\n\nQuantitative-polymerase chain reaction (qPCR) protocols were as detailed in De Sosa et al. 2018.\n\nMicrobial nitrogen cycling gene abundance was investigated by qPCR targeting specific genes or genetic regions. Bacterial and archaeal communities were targeted via the 16S rRNA genes, while the fungal community abundance was targeted by the ITS region. The different genes involved in soil nitrogen cycling were investigated: \n•\tNitrogen fixation (nifH gene)\n•\tNitrification by targeting the ammonia oxidising bacteria (AOB) and archaea (AOA) (amoA gene)\n•\tDenitrifiers via the nitrite reductase (nirK and nirS genes) and the nitrous oxide reductase (nosZ genes clade I and II)\n•\tDegradation of urea was also assessed by targeting the ureC gene\n\nqPCR amplifications were performed in 10 μL volumes containing 5 μL of QuantiFast (Qiagen, Manchester, UK), 2.8 μL of nuclease-free water (Severn Biotech, Kidderminster, UK), 0.1 μL of each primer (1 μM) and 2 μL of template DNA at 5 ng μL−1, using a CFX384 Touch® Real-Time PCR Detection System (Bio-Rad, Hemel Hempstead, UK). \n\nStandards for each molecular target were obtained using a 10 fold serial dilution of PCR products amplified from an environmental reference DNA (also used as positive control) and purified by gel extraction using the Wizard® SV Gel and PCR Clean Up System (Promega, Southampton, UK) following the manufacturer's instruction and quantified by fluorometer Qubit® 2.0 dsDNA BR Assay Kit (Thermo FisherScientific). \n\nStandard curve template DNA and the negative/positive controls were amplified in triplicate. Amplification conditions for all qPCR assays consisted in 2 steps: first denaturation at 95 degrees Celsius for 5 minutes followed by 40 cycles at 95 degrees Celsius for 10 seconds and 60 degrees Celsius for 30 seconds that included annealing, elongation and reading. Each amplification was followed by melting curve (increase in temperature from 60 degrees Celsius to 95 degrees Celsius, with a reading every 0.5degrees Celsius) to assess the specificity of each assay.\n\nThe efficiency of the qPCR varied between 85.2 percent and 95.9 percent (except nozII 74.4 percent, amplicon 746 bp long), and R2 between 0.987 and 0.999. The melting curves showed specificity for all the genes, except as expected for the fungal Internal Transcribed Spacer (ITS), that showed the amplification of products of different lengths, due to the variability in length of the ITS region between different fungal taxa (Manter and Vivanco, 2007).\n\nMicrobial diversity indices:\nExtracted DNA was supplied from Rothamsted Research in Harpenden (see section 5.4.13 in main supporting document) for amplicon sequencing at the facilities of the Molecular Ecology Group, Centre for Ecology & Hydrology, Wallingford. <50 μL volumes of DNA extract were supplied in 96-well plate format, these were subject to:\n•\t16S rRNA amplicon sequencing as per Kozich 2013 (Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform), utilising V3-V4 region primers\n•\tITS rRNA amplicon sequencing employing the Kozich 2013 strategy, utilizing ITS primers by Ihrmark 2012 (New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities)\n\nAmplicons were sequenced on Illumina MiSeq platform with V3 chemistry. Resulting sequences were demultiplexed using Illumina Basespace. 16S amplicons were processed using in-house developed pipelines for quality filtering, merging and taxonomic assignment (GreenGenes database) of operational taxonomic units (OTUs). ITS amplicons were processed using the R package Dada2 for quality filtering, merging. \nR package Vegan was used to analyse amplicon sequences. Bacterial and fungal Shannon’s Index diversity scores for each sample were produced from rarefied data using diversity function. Species richness for each sample were similarly produced using ‘specnumber’ function.\n\nBacterial phylum level frequencies were produced from taxonomically identified OTU sequences (using Greengenes database), these values are a percentage of the rarefied total.\n\nAll results were entered into CSV spreadsheet.","locations":["POLYGON((-4.022 50.767, -4.022 55.873, -3.191 55.873, -3.191 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0001-8659-6092"],"organisation":["UK Centre for Ecology & Hydrology","Rothamsted Research","Centre for Ecology & Hydrology","Bangor University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/59f81d41-a789-4c5c-8ab8-36baa7ac2c55","10.5285/59f81d41-a789-4c5c-8ab8-36baa7ac2c55"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/006jb1a24","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Manter, D. K., & Vivanco, J. M. (2007). Use of the ITS primers, ITS1F and ITS4, to characterize fungal abundance and diversity in mixed-template samples by qPCR and length heterogeneity analysis. Journal of Microbiological Methods, 71(1), 7–14.","Kozich, J.J., Westcott, S.L., Baxter, N.T., Highlander, S.K., & Schloss, P.D. (2013). Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform. Applied and Environmental Microbiology, 79(17), 5112–5120.","de Sosa, L.L., Glanville, H.C., Marshall, M.R., Schnepf, A., Cooper, D.M., Hill, P.W., … Jones, D.L. (2018). Stoichiometric constraints on the microbial processing of carbon with soil depth along a riparian hillslope. Biology and Fertility of Soils, 54(8), 949–963. "],"supplementalName":["Kozich 2013 ","GreenGenes database","The UK-China Virtual Joint Centre for Improved Nitrogen Agronomy (CINAG)"],"title":"Soil biological properties from an inorganic fertiliser (grass trial) experiment at North Wyke, Henfaes Farm and Easter Bush, UK (2016)","topic":["0/Soil/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"The data nitrogen gene data, soil biodiversity indices and microbial community composition, for three soil depths (0-15, 15-30 and 30-60 cm) from a three-cut silage plot trial located at three grassland sites within the UK collected between April 2016 and October 2016...."},{"publicationDate":"2020-09-18T00:00:00.000+00:00","authorAffiliation":["University of Sheffield","Kākāpō Recovery, New Zealand Department of Conservation"],"authorGivenName":["J.L.","J.M.S.","N."],"authorFamilyName":["Savage","Crane","Hemmings"],"authorFullName":["Savage, J.L.","Crane, J.M.S.","Hemmings, N."],"authorOrcid":["https://orcid.org/0000-0002-4737-5673","https://orcid.org/0000-0003-4441-8399","https://orcid.org/0000-0003-2418-3625"],"authorRor":["https://ror.org/05krs5044","https://ror.org/03mh7j916"],"catalogue":"eidc","description":"This dataset contains information on the fertility and physical characteristics of kākāpō (Strigops habroptilus) eggs laid on Anchor and Whenua Hou islands, New Zealand during the 2018/19 breeding season. Of the 252 total eggs laid, 129 failed to develop; undeveloped eggs were dissected, fixed in formalin, and then inspected using fluorescence microscopy at the University of Sheffield UK. For all eggs, data are provided on mother and clutch of origin, developmental stage reached, and maternal mating behaviour. For dissected undeveloped eggs, additional data include fertilisation status, numbers of sperm visible on the perivitelline layer, egg size and weight, dry eggshell weight, and yolk and albumen weights.","documentType":"GEMINI_DOCUMENT","identifier":"cd0e9bc1-bd57-44ae-9fec-2f6239e8726d","incomingCitationCount":1,"givenName":["J.L.","J.M.S.","N.","James"],"familyName":["Savage","Crane","Hemmings"],"fullName":["Savage, J.L.","Crane, J.M.S.","Hemmings, N.","Savage, J."],"keyword":["New Zealand","Environmental survey","Eggshells","Embryo mortality","Infertility","Kākāpō","Hatching failure","Sperm","Kakapo","Strigops habroptilus","conservation","mortality"],"keywordsPlace":["New Zealand"],"keywordsTheme":["Environmental survey"],"keywordsOther":["Eggshells","Embryo mortality","Infertility","Kākāpō","Hatching failure","Sperm","Kakapo","Strigops habroptilus","conservation","mortality"],"licence":"Open government licence","lineage":"All data were collected by the authors or by other staff within the New Zealand Department of Conservation Kākāpō Recovery Team. All data collection was carried out by trained and experienced staff following established conservation management or laboratory protocols. \n\nAll data were collected in field or lab notebooks in the first instance, then transcribed to digital spreadsheets. Measurements reported in data files were checked against original notebooks before data deposition. Original notebooks are held at the University of Sheffield, UK, and with the Kākāpō Recovery Team, NZ; the latter also maintains a comprehensive kākāpō database. \n\nSee documentation file for further methodological details and data collection roles.","locations":["POLYGON((166.478 -46.803, 166.478 -45.739, 167.675 -45.739, 167.675 -46.803, 166.478 -46.803))"],"orcid":["https://orcid.org/0000-0002-4737-5673","https://orcid.org/0000-0003-4441-8399","https://orcid.org/0000-0003-2418-3625"],"organisation":["University of Sheffield","Kākāpō Recovery, New Zealand Department of Conservation","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/cd0e9bc1-bd57-44ae-9fec-2f6239e8726d","10.5285/cd0e9bc1-bd57-44ae-9fec-2f6239e8726d"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Sheffield"],"ror":["https://ror.org/05krs5044","https://ror.org/03mh7j916","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Website of the New Zealand Department of Conservation Kākāpō Recovery Programme."],"supplementalName":["Kākāpō Recovery"],"title":"Kākāpō (Strigops habroptilus) egg fertility on Anchor and Whenua Hou islands, New Zealand, 2019 breeding season","topic":["0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains information on the fertility and physical characteristics of kākāpō (Strigops habroptilus) eggs laid on Anchor and Whenua Hou islands, New Zealand during the 2018/19 breeding season. Of the 252 total eggs laid, 129 failed to develop; undeveloped..."},{"publicationDate":"2014-06-04T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Grant Institute","University of St Andrews"],"authorGivenName":["B.M.","J.","L.","D.M."],"authorFamilyName":["Spears","Watt","Carvalho","Paterson"],"authorFullName":["Spears, B.M.","Watt, J.","Carvalho, L.","Paterson, D.M."],"authorOrcid":["https://orcid.org/0000-0003-1174-6476","https://orcid.org/0000-0002-2912-4969","https://orcid.org/0000-0002-9768-9902"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/02wn5qz54"],"catalogue":"eidc","description":"This is a dataset obtained from analysis of lake sediment and overlying water from six sites along a depth gradient, in Loch Leven, Scotland, over a period of one year. Parameters measured from the water and included in the dataset are dissolved oxygen concentration, conductivity, pH, temperature, concentrations of three forms of phosphorus, and ammonium and silica concentrations. Chlorophyll a concentration measured from the sediment surface is included, and within the sediment concentrations of seven different forms of phosphorus are provided. ","documentType":"GEMINI_DOCUMENT","identifier":"76a2bd9a-fb02-4f37-91b9-4835eb31ab7b","incomingCitationCount":0,"givenName":["Bryan","B.M.","J.","L.","D.M."],"familyName":["Spears","Watt","Carvalho","Paterson"],"fullName":["Spears, B.","Spears, B.M.","Watt, J.","Carvalho, L.","Paterson, D.M."],"keyword":["Loch Leven","Perth & Kinross","Scotland","UK","Water quality","chemistry","phosphorus","sediment","lake"],"keywordsPlace":["Loch Leven","Perth & Kinross","Scotland","UK"],"keywordsTheme":["Water quality"],"keywordsOther":["chemistry","phosphorus","sediment","lake"],"licence":"Open government licence","lineage":"Sampling and analyses were performed using documented methods, as described in the contextual metadata accompanying this dataset. Please contact the author if further details are required.","locations":["POLYGON((-3.416 56.175, -3.416 56.224, -3.326 56.224, -3.326 56.175, -3.416 56.175))"],"orcid":["https://orcid.org/0000-0003-1174-6476","https://orcid.org/0000-0002-2912-4969","https://orcid.org/0000-0002-9768-9902"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","Grant Institute","University of St Andrews","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["1401807237847","https://catalogue.ceh.ac.uk/id/76a2bd9a-fb02-4f37-91b9-4835eb31ab7b","10.5285/76a2bd9a-fb02-4f37-91b9-4835eb31ab7b"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/02wn5qz54","https://ror.org/04xw4m193"],"state":"published","title":"Environmental and chemical determinands associated with phosphorus in Loch Leven bed sediments (2004-2005)","topic":["0/Water quality/"],"version":1.0,"view":["public","clamw"],"shortenedDescription":"This is a dataset obtained from analysis of lake sediment and overlying water from six sites along a depth gradient, in Loch Leven, Scotland, over a period of one year. Parameters measured from the water and included in the dataset are dissolved oxygen concentration,..."},{"publicationDate":"2023-02-09T00:00:00.000+00:00","authorAffiliation":["University of Leeds","IISER, Pune","Unaffiliated","St. Joseph's college, Calicut"],"authorGivenName":["E.","D.","D.R.","B.","R."],"authorFamilyName":["Gloor","Barua","Galbraith","Hegde","Sunny","Tiwari"],"authorFullName":["Gloor, E.","Barua, D.","Galbraith, D.R.","Hegde, B.","Sunny, R.","Tiwari, R."],"authorOrcid":["https://orcid.org/0000-0002-9384-6341","https://orcid.org/0000-0002-8761-0084","https://orcid.org/0000-0002-5555-4823","https://orcid.org/0000-0002-8723-607X","https://orcid.org/0000-0002-2191-769X"],"catalogue":"eidc","description":"This dataset includes tree eco-physiological traits characterising ranges of functioning of various components of trees. Specifically the dataset includes measurements of thermal limits of functioning of photosystem II, hydraulic safety margin, turgor loss point, CO2 assimilation versus temperature curves, leaf morphological traits for nine representative species measured during two seasons: post-monsoon and summer.\n\nThe overall purpose of the measurements from this project is to determine eco-physiological limits of functioning of tropical trees in Western Ghats India and to relate them to continuously measured temperature and water status of tropical forest trees at a representative site (Sirsi).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R005079/1"],"identifier":"d057f4e4-c2c7-4cea-a5de-1562f970a533","incomingCitationCount":0,"givenName":["E.","D.","D.R.","B.","R.","Emanuel"],"familyName":["Gloor","Barua","Galbraith","Hegde","Sunny","Tiwari"],"fullName":["Gloor, E.","Barua, D.","Galbraith, D.R.","Hegde, B.","Sunny, R.","Tiwari, R."],"keyword":["Safety limits","Tree traits","tropical forest","tree"],"keywordsOther":["Safety limits","Tree traits","tropical forest","tree"],"licence":"Open government licence","lineage":"The trait data were measured during targeted campaigns in 2020 and 2021 at a forest fragment close to Sirsi. Measurement methodologies:\n1) Thermal traits: a) CO2 assimilation temperature relationship, derived from leaf A-T (CO2 \t\t\t\tassimilation versus temperature) curves measured using LICOR 6400 and b) Temperature limits of Photosystem II functioning derived from fluorescence measurement of leaf disks heated in water bath.\n2) Hydraulic traits - a) Stress (negative pressure) at which 50% of conductivity is lost based on \t\t\tvulnerability curves and b) Turgor loss point measured using PV curves.\n","locations":["POLYGON((74.823 14.6, 74.823 14.63, 74.845 14.63, 74.845 14.6, 74.823 14.6))"],"orcid":["https://orcid.org/0000-0002-9384-6341","https://orcid.org/0000-0002-8761-0084","https://orcid.org/0000-0002-5555-4823","https://orcid.org/0000-0002-8723-607X","https://orcid.org/0000-0002-2191-769X"],"organisation":["University of Leeds","IISER, Pune","Unaffiliated","St. Joseph's college, Calicut","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/d057f4e4-c2c7-4cea-a5de-1562f970a533","10.5285/d057f4e4-c2c7-4cea-a5de-1562f970a533"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Leeds"],"ror":["https://ror.org/04xw4m193","https://ror.org/024mrxd33"],"state":"published","title":"Functional traits of tropical forest tree species, Sirsi, Western Ghats, India, 2021","version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset includes tree eco-physiological traits characterising ranges of functioning of various components of trees. Specifically the dataset includes measurements of thermal limits of functioning of photosystem II, hydraulic safety margin, turgor loss point, CO2..."},{"publicationDate":"2020-12-08T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["S.M.","C.","E.","R.A.","A.","P.A.","D.W.","D.A.","R.J.","R.L.","P.","J.","M.","B.","C.M."],"authorFamilyName":["Smart","Andrews","Fitos","Garbutt","Gray","Henrys","Koblizek","Pallett","Robinson","Rose","Rowe","Scarlett","Towill","Wagner","Williams","Wood"],"authorFullName":["Smart, S.M.","Andrews, C.","Fitos, E.","Garbutt, R.A.","Gray, A.","Henrys, P.A.","Koblizek, E.","Pallett, D.W.","Robinson, D.A.","Rose, R.J.","Rowe, R.L.","Scarlett, P.","Towill, J.","Wagner, M.","Williams, B.","Wood, C.M."],"authorOrcid":["https://orcid.org/0000-0003-2750-7832","https://orcid.org/0000-0003-2428-272X","https://orcid.org/0000-0002-9145-9786","https://orcid.org/0000-0002-6785-0590","https://orcid.org/0000-0003-4758-1482","https://orcid.org/0000-0001-7290-4867","https://orcid.org/0000-0001-9993-5743","https://orcid.org/0000-0002-7554-821X","https://orcid.org/0000-0001-6242-8158","https://orcid.org/0000-0002-0394-2998"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset consists of plant species presence and abundance in different sizes of plots  recorded from the first 100 1km squares across Great Britain in 2019, as part of a rolling soil and vegetation monitoring program of 500 1km squares, repeated every 5 years. \n\nThe UKCEH Countryside Survey is a unique study or 'audit' of the natural resources of the UK's countryside. The sample sites are chosen from a stratified random sample, based on a 15 by 15 km grid of GB. Surveys have been carried out in 1978, 1984, 1990, 1998 and 2007 by the UK Centre for Ecology & Hydrology (UKCEH) and predecessors, with repeated visits to the majority of squares. The countryside is sampled and surveyed using rigorous scientific methods, allowing us to compare new results with those from previous surveys. In this way, we can detect the gradual and subtle changes that occur in the UK's countryside over time. In addition to vegetation data, soil data are also gathered by the current phase of the Countryside Survey.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"fd6ae272-aeb5-4573-8e8a-7ccfae64f506","incomingCitationCount":2,"givenName":["S.M.","C.","E.","R.A.","A.","P.A.","D.W.","D.A.","R.J.","R.L.","P.","J.","M.","B.","C.M.","Simon"],"familyName":["Smart","Andrews","Fitos","Garbutt","Gray","Henrys","Koblizek","Pallett","Robinson","Rose","Rowe","Scarlett","Towill","Wagner","Williams","Wood"],"fullName":["Smart, S.M.","Andrews, C.","Fitos, E.","Garbutt, R.A.","Gray, A.","Henrys, P.A.","Koblizek, E.","Pallett, D.W.","Robinson, D.A.","Rose, R.J.","Rowe, R.L.","Scarlett, P.","Towill, J.","Wagner, M.","Williams, B.","Wood, C.M.","Smart, S."],"keyword":["Great Britain","UK-SCAPE ","vascular plants","ground flora"],"keywordsPlace":["Great Britain"],"keywordsProject":["UK-SCAPE "],"keywordsTheme":["vascular plants","ground flora"],"licence":"Open government licence","lineage":"The data were recorded using electronic data capture devices in the summer of 2019 by professional, trained surveyors.  Data were recorded from 100 x 1km squares sited across Britain, selected by random stratified sample. The survey was managed by the UK Centre for Ecology & Hydrology.  Standard Countryside Survey methodology was applied (refer to the online documentation).","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0003-2750-7832","https://orcid.org/0000-0003-2428-272X","https://orcid.org/0000-0002-9145-9786","https://orcid.org/0000-0002-6785-0590","https://orcid.org/0000-0003-4758-1482","https://orcid.org/0000-0001-7290-4867","https://orcid.org/0000-0001-9993-5743","https://orcid.org/0000-0002-7554-821X","https://orcid.org/0000-0001-6242-8158","https://orcid.org/0000-0002-0394-2998"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/fd6ae272-aeb5-4573-8e8a-7ccfae64f506","10.5285/fd6ae272-aeb5-4573-8e8a-7ccfae64f506"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["UKCEH Countryside Survey project website "],"supplementalName":["UKCEH Countryside Survey project website "],"title":"Vegetation plot data from the UKCEH Countryside Survey, Great Britain, 2019","version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset consists of plant species presence and abundance in different sizes of plots  recorded from the first 100 1km squares across Great Britain in 2019, as part of a rolling soil and vegetation monitoring program of 500 1km squares, repeated every 5 years. \n\nThe..."},{"publicationDate":"2024-11-19T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["L.","M.","C.","K.","S.","V.","B.A.","E.","R.","R.A.","A.","G.","P.A.","P.","A.M.","I.","D.W.","M.G.","H.","R.L.","S.M.","J.","C.M.","D.A."],"authorFamilyName":["Bentley","Brentegani","Andrews","Brown","Cope","Ebuele","Emmett","Fitos","Friend","Garbutt","Gray","Hancock","Henrys","Higgins","Keenan","Keith","Lebron","Moscrop","O'Brien","Pallett","Pereira","Reinsch","Risser","Rowe","Scarlett","Smart","Tandy","Towill","Wagner","Wood","Robinson"],"authorFullName":["Bentley, L.","Brentegani, M.","Andrews, C.","Brown, K.","Cope, S.","Ebuele, V.","Emmett, B.A.","Fitos, E.","Friend, R.","Garbutt, R.A.","Gray, A.","Hancock, G.","Henrys, P.A.","Higgins, A.","Keenan, P.","Keith, A.M.","Lebron, I.","Moscrop, A.","O'Brien, L.","Pallett, D.W.","Pereira, M.G.","Reinsch, S.","Risser, H.","Rowe, R.L.","Scarlett, P.","Smart, S.M.","Tandy, S.","Towill, J.","Wagner, M.","Wood, C.M.","Robinson, D.A."],"authorOrcid":["https://orcid.org/0000-0001-5055-7673","https://orcid.org/0000-0002-2713-4389","https://orcid.org/0000-0002-9145-9786","https://orcid.org/0000-0002-6785-0590","https://orcid.org/0000-0001-9619-1320","https://orcid.org/0000-0001-8610-9717","https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-2750-7832","https://orcid.org/0000-0003-0662-0991","https://orcid.org/0000-0002-0394-2998","https://orcid.org/0000-0001-7290-4867"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset consists of measures of topsoil (0-15 cm) physico-chemical properties from soils sampled from 150 x 1-km squares across Great Britain in 2023 as part of a rolling soil and vegetation monitoring program of 500 1-km squares repeated every 5 years. The properties included are: pH, soil organic matter (loss on ignition, LOI), derived carbon concentration and carbon stock (soil organic carbon, SOC), soil group, soil bulk density of fine earth, soil moisture of wet soil, fine earth volumetric water content (dry), nitrogen concentration and stock, and Olsen-phosphorus concentration.\n\nThe UKCEH Countryside Survey is a unique study or 'audit' of the natural resources of the UK's countryside. The sample sites are chosen from a stratified random sample, based on a 15 by 15 km grid of GB. Surveys have been carried out in 1978, 1984, 1990, 1998 and 2007 by the UK Centre for Ecology & Hydrology (UKCEH) and predecessors, with repeated visits to most of the squares. The countryside is sampled and surveyed using rigorous scientific methods, allowing us to compare new results with those from previous surveys. In this way, we can detect the gradual and subtle changes that occur in the UK's countryside over time. In addition to soil data, vegetation species data are also gathered by the current phase of the UKCEH Countryside Survey.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability and through the UKCEH National Capability for UK Challenges Programme NE/Y006208/1.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1","NE/Y006208/1"],"identifier":"fe58d52e-f00c-4895-a35e-26b7353cc275","incomingCitationCount":0,"givenName":["L. ","L.","M.","C.","K.","S.","V.","B.A.","E.","R.","R.A.","A.","G.","P.A.","P.","A.M.","I.","D.W.","M.G.","H.","R.L.","S.M.","J.","C.M.","D.A."],"familyName":["Bentley","Brentegani","Andrews","Brown","Cope","Ebuele","Emmett","Fitos","Friend","Garbutt","Gray","Hancock","Henrys","Higgins","Keenan","Keith","Lebron","Moscrop","O'Brien","Pallett","Pereira","Reinsch","Risser","Rowe","Scarlett","Smart","Tandy","Towill","Wagner","Wood","Robinson"],"fullName":["Bentley, L.","Brentegani, M.","Andrews, C.","Brown, K.","Cope, S.","Ebuele, V.","Emmett, B.A.","Fitos, E.","Friend, R.","Garbutt, R.A.","Gray, A.","Hancock, G.","Henrys, P.A.","Higgins, A.","Keenan, P.","Keith, A.M.","Lebron, I.","Moscrop, A.","O'Brien, L.","Pallett, D.W.","Pereira, M.G.","Reinsch, S.","Risser, H.","Rowe, R.L.","Scarlett, P.","Smart, S.M.","Tandy, S.","Towill, J.","Wagner, M.","Wood, C.M.","Robinson, D.A."],"keyword":[" Great Britain"," UK-SCAPE","NC-UK","Soil","derived carbon concentration"," electrical conductivity"," Environmental survey"," fine earth volumetric water content"," Olsen-phosphorous","SOC"," soil bulk density of fine earth"," soil nitrogen"," soil organic matter"," soil pH"," total soil organic carbon"],"keywordsPlace":[" Great Britain"],"keywordsProject":[" UK-SCAPE","NC-UK"],"keywordsTheme":["Soil"],"keywordsOther":["derived carbon concentration"," electrical conductivity"," Environmental survey"," fine earth volumetric water content"," Olsen-phosphorous","SOC"," soil bulk density of fine earth"," soil nitrogen"," soil organic matter"," soil pH"," total soil organic carbon"],"licence":"Open government licence","lineage":"Within each of 150 x 1km sample squares, a set of soil samples were taken from up to 5 pre-determined randomly dispersed locations (where practically possible). The soil sample analysed for soil metrics was taken using a black plastic core ('C-core'), 15 cm long, from a location co-incident with vegetation surveys. \n \nAfter collection, the soil cores were refrigerated and stored until posted, usually within a couple of days, to laboratories at the UK Centre for Ecology & Hydrology (UKCEH), Bangor and Lancaster. Analysed data were transferred to secure databases at UKCEH following sample analysis. \n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0001-5055-7673","https://orcid.org/0000-0002-2713-4389","https://orcid.org/0000-0002-9145-9786","https://orcid.org/0000-0002-6785-0590","https://orcid.org/0000-0001-9619-1320","https://orcid.org/0000-0001-8610-9717","https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-2750-7832","https://orcid.org/0000-0003-0662-0991","https://orcid.org/0000-0002-0394-2998","https://orcid.org/0000-0001-7290-4867"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/fe58d52e-f00c-4895-a35e-26b7353cc275","10.5285/fe58d52e-f00c-4895-a35e-26b7353cc275"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Topsoil physico-chemical properties from the UKCEH Countryside Survey, Great Britain, 2023","topic":["0/Soil/"],"version":1.0,"view":["public","simgil"],"shortenedDescription":"This dataset consists of measures of topsoil (0-15 cm) physico-chemical properties from soils sampled from 150 x 1-km squares across Great Britain in 2023 as part of a rolling soil and vegetation monitoring program of 500 1-km squares repeated every 5 years. The properties..."},{"publicationDate":"2024-06-29T00:00:00.000+00:00","catalogue":"eidc","description":"Land Cover Map 2022 (LCM2022) is a suite of geospatial land cover datasets (raster and polygon) describing the UK land surface in 2022. These were produced at the UK Centre for Ecology & Hydrology by classifying satellite images from 2022.\n\nLCM2022 includes four geospatial datasets each for Great Britain and Northern Ireland:\n - 10 m Classified Pixel dataset, classified to create a single mosaic of national cover\n - Land Parcel datasets which are the result of intersecting the 10 m Classified Pixel dataset with the UKCEH Land Parcel Spatial Framework to generate land parcel attributes\n - 25 m Pixel Rasterised Land Parcel datasets: the result of rasterising the Land Parcel dataset into 25 m pixels\n - 1 km summary raster products, summarising dominant land cover class and percentage coverage of each land cover class\n\nLCM2022 is the tenth UK land cover map produced by UKCEH. Previous versions are LCM1990, 2000, 2007, 2015, 2017, 2018, 2019, 2020, and 2021.","documentType":"GEMINI_DOCUMENT","identifier":"a413d1c9-5c2a-4864-a3ff-2b9f764ec32d","incomingCitationCount":0,"givenName":["Chris"],"familyName":["Marston"],"fullName":["Marston, C."],"licence":"Non-Open government licence","organisation":["UK Centre for Ecology & Hydrology"],"recordType":"Data collection","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/a413d1c9-5c2a-4864-a3ff-2b9f764ec32d"],"resourceStatus":"Unknown","resourceType":"Aggregation","ror":["https://ror.org/00pggkr55"],"state":"published","title":"Land Cover Map 2022","version":1.0,"view":["public","jashun"],"shortenedDescription":"Land Cover Map 2022 (LCM2022) is a suite of geospatial land cover datasets (raster and polygon) describing the UK land surface in 2022. These were produced at the UK Centre for Ecology & Hydrology by classifying satellite images from 2022.\n\nLCM2022 includes four geospatial..."},{"publicationDate":"2000-01-01T00:00:00.000+00:00","catalogue":"eidc","description":"This web map service (WMS) depicts estimates of mean values of soil bacteria, invertebrates, carbon, nutrients and pH within selected habitats and parent material characteristics across GB . Estimates were made using CS data using a mixed model approach. The estimated means of habitat/parent material combinations using 2007 data are modelled on dominant habitat and parent material characteristics derived from the Land Cover Map 2007 and Parent Material Model 2009, respectively. Bacteria data is representative of 0 - 15 cm soil depth and includes bacterial community structure as assessed by ordination scores. Invertebrate data is representative of 0 - 8 cm soil depth and includes Total catch, Mite:Springtail ratio, Number of broad taxa and Shannon diversity. Gravimetric moisture content (%) data is representative of 0 - 15 cm soil depth Carbon data is representative of 0-15 cm soil depth and includes Loss-on-ignition (%), Carbon concentration (g kg-1) and Carbon density (t ha-1). Loss-on-ignition was determined by combustion of 10g dry soil at 375 deg C for 16 hours; carbon concentration was estimated by multiplying LOI by a factor of 0.55, and carbon density was estimated by combining carbon concentration with bulk density estimates. Nutrient data is representative of 0 - 15 cm soil depth and includes total nitrogen (N) concentration (%), C:N ratio and Olsen-Phosphorus (mg/kg). pH and bulk density (g cm-3) data is representative of 0 - 15 cm soil depth. Topsoil pH was measured using 10g of field moist soil with 25ml de-ionised water giving a ratio of soil to water of 1:2.5 by weight; bulk density was estimated by making detailed weight measurements throughout the soil processing procedure. Areas, such as urban and littoral rock, are not sampled by CS and therefore have no associated data. Also, in some circumstances sample sizes for particular habitat/parent material combinations were insufficient to estimate mean values. 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Estimates were made using CS data using a mixed model approach. The estimated..."},{"publicationDate":"2019-02-27T00:00:00.000+00:00","altTitle":["Pesticide application maps for England and Wales, 2012-2016"],"authorAffiliation":["Centre for Ecology & Hydrology"],"authorGivenName":["S.G.","P.A.","J.W.","B.M.","R.F."],"authorFamilyName":["Jarvis","Henrys","Redhead","Da Silva Osório","Pywell"],"authorFullName":["Jarvis, S.G.","Henrys, P.A.","Redhead, J.W.","Da Silva Osório, B.M.","Pywell, R.F."],"authorOrcid":["https://orcid.org/0000-0001-5382-5135","https://orcid.org/0000-0003-4758-1482","https://orcid.org/0000-0002-2233-3848","https://orcid.org/0000-0001-5540-4203","https://orcid.org/0000-0001-6431-9959"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This data product maps pesticide applications across England and Wales.  It is produced at a 1km resolution with units of kg active ingredient applied per year. 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Temporal variation in pesticide application is not modelled explicitly but is reflected in the uncertainty maps.\n\nThis data product was funded by the Natural Environment Research Council (NERC) under research programme NE/N018125/1 Achieving Sustainable Agricultural Systems (ASSIST).  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It is produced at a 1km resolution with units of kg active ingredient applied per year. Pesticide application rates (kg/km2/yr) are calculated for each of the crops grown in each 1km square, with..."},{"publicationDate":"2024-02-27T00:00:00.000+00:00","authorAffiliation":["Rothamsted Research","Forest Research","University of Warwick"],"authorGivenName":["A.","V.","N. ","S."],"authorFamilyName":["Milne","Alonso Chavez","Brown","Parnell"],"authorFullName":["Milne, A.","Alonso Chavez, V.","Brown, N.","Parnell, S."],"authorOrcid":["https://orcid.org/0000-0002-4509-0578","https://orcid.org/0000-0003-3506-7603","https://orcid.org/0000-0003-3590-0538","https://orcid.org/0000-0002-3039-1159"],"authorRor":["https://ror.org/0347fy350","https://ror.org/03wcc3744","https://ror.org/01a77tt86"],"catalogue":"eidc","description":"This dataset contains a model, input data and outputs of the Emerald Ash Borer (EAB; Agrilus planipennis) lifecycle and spread across Great Britain. 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","S."],"familyName":["Milne","Alonso Chavez","Brown","Parnell"],"fullName":["Milne, A.","Alonso Chavez, V.","Brown, N.","Parnell, S."],"keyword":["Great Britain","Invasive species","simulated spread","optimal sampling locations","Agrilus planipennis","trade activity"],"keywordsPlace":["Great Britain"],"keywordsTheme":["Invasive species"],"keywordsOther":["simulated spread","optimal sampling locations","Agrilus planipennis","trade activity"],"licence":"Open government licence","lineage":"The model requires the entry point to be initialized. We developed maps to identify the most likely first incursion point at locations across Great Britain on a 1km x 1km grid. These maps were informed by data from the forestry commission on likely entry points, and data on firewood use. When creating these maps, we considered nine scenarios related to how certain we are that EAB will arrive through known pathways related to wood imports (70%, 50%, 30%) and the probability that EAB would escape at port rather than at the onwards depots (25%, 50%, 75%).  For each scenario we sampled 10000 realizations for likely entry points.  These form the inputs to our model.\n\nThe model is set up to run for annual time steps for 8 years. For each simulated year the larval density and tree health is recorded in infested cells and reported in output files. The model is currently set up to do this for up to 10000 realizations of entry point. The data in the output file can then be used to optimize surveillance. We did this using simulated annealing for three trapping types (Girdled, sticky straps and under bark sampling) in the nine different scenarios. \n\nThe model code was developed in Visual Studio, but plain text files have been provided so that the code can be compiled and run outside of Visual Studio. The model code was checked for errors and the outputs were validated, as far as possible, against spread characteristics from the US. 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It extrapolates the impact of these on the British Land system at decadal timesteps from 2020-2080.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Helmholtz Association","Met Office"],"grant":["NE/R016429/1"],"identifier":"f9ab3051-4f85-415f-b691-371ff8e951f2","incomingCitationCount":0,"givenName":["Calum","C.","B.","P.","V.","E.A.","R.","M.","P.A.","E.L.","M"],"familyName":["Brown","Seo","Alexander","Burton","Chacón-Montalván","Dunford-Brown","Merkle","Harrison","Prestele","Robinson","Rounsevell"],"fullName":["Brown, C.","Seo, B.","Alexander, P.","Burton, V.","Chacón-Montalván, E.A.","Dunford-Brown, R.","Merkle, M.","Harrison, P.A.","Prestele, R.","Robinson, E.L.","Rounsevell, M."],"keyword":["Mapping","Land use","Climate and climate change","Great Britain","Agent-based modelling","ABM","Socio-ecological","IPCC","Shared Socioeconomic Pathway","SSP","RCP","Representative Concentration Pathways","UK-SCAPE"],"keywordsTheme":["Mapping","Land use","Climate and climate change"],"keywordsOther":["Great Britain","Agent-based modelling","ABM","Socio-ecological","IPCC","Shared Socioeconomic Pathway","SSP","RCP","Representative Concentration Pathways","UK-SCAPE"],"licence":"Open government licence","lineage":"The data was developed as part of research done within the SPEED project under UKSCAPE. 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