{"numFound":19,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CAssociation+for+the+Conservation+of+Biodiversity+of+the+Republic+of+Kazakhstan&facet=funder%7CFrankfurt+Zoological+Society&facet=funder%7CThe+Saiga+Conservation+Alliance%2C+UK&facet=funder%7CNatural+Environment+Research+Council&facet=funder%7CFlora+and+Fauna+International%2C+Cambridge%2C+UK&facet=topic%7C0%2FPhenology%2F","results":[{"publicationDate":"2024-07-01T00:00:00.000+00:00","authorAffiliation":["University of Bristol","HERD International","Tribhuvan University","University of Helsinki","Agriculture and Forestry University","Harvard University","University College London","Technical University of Darmstadt"],"authorGivenName":["J.","T.P.","S.","L.","D.R.","A.","K.B.","D.C.","P.","R.","S.B.","K.","D.","M.","N.","S.S.","F.","T.","M.R.","Y.D.","E."],"authorFamilyName":["Memmott","Timberlake","Baral","Bhandari","Bhusal","Bohara","Bohora","Budha","Cirtwill","Devkota","Giri","Joshi","Kami","Karti","Kathayat","Khadka","Kortsch","Mahatara","Manandhar","Myers","Nepali","Rawat","Rokaya","Roslin","Sapkota","Saville","Smith","Tamang","Thapa","Villa-Galaviz"],"authorFullName":["Memmott, J.","Timberlake, T.P.","Baral, S.","Bhandari, L.","Bhusal, D.R.","Bohara, S.","Bohora, A.","Bohora, K.B.","Bohora, S.","Budha, D.C.","Budha, P.","Budha, R.","Budha, S.","Budha, S.B.","Cirtwill, A.","Devkota, K.","Giri, S.","Joshi, D.","Kami, S.","Karti, R.","Kathayat, M.","Khadka, J.","Kortsch, S.","Mahatara, N.","Manandhar, S.","Myers, S.S.","Nepali, S.","Rawat, F.","Rokaya, S.","Roslin, T.","Sapkota, S.","Saville, N.","Smith, M.R.","Tamang, A.","Tamang, Y.D.","Thapa, S.","Villa-Galaviz, E."],"authorOrcid":["https://orcid.org/0000-0002-2113-2577","https://orcid.org/0000-0001-8166-0825","https://orcid.org/0000-0001-5448-1530","https://orcid.org/0000-0002-1772-3868","https://orcid.org/0000-0002-7365-0851","https://orcid.org/0000-0002-6495-4781","https://orcid.org/0000-0002-5808-2454","https://orcid.org/0000-0002-2957-4791","https://orcid.org/0000-0002-7148-3789","https://orcid.org/0000-0002-1735-3684","https://orcid.org/0000-0001-5207-2370","https://orcid.org/0000-0002-2783-7877"],"authorRor":["https://ror.org/0524sp257","https://ror.org/02rg1r889","https://ror.org/040af2s02","https://ror.org/01f60xs15","https://ror.org/03vek6s52","https://ror.org/02jx3x895","https://ror.org/05n911h24"],"catalogue":"eidc","description":"This is a transdisciplinary dataset from ten smallholder farming villages in Patarasi Rural Municipality, Jumla District, Nepal collected during 2021 and 2022. The human component of the dataset includes fortnightly 24-hour dietary recall surveys and monthly anthropometry surveys of 721 participants (adult males, adult females, adolescent girls and children under five) from 200 smallholder households collected over a twelve-month period. For each household, there is also data on socioeconomic status, farming practices, cooking practices and beekeeping practices. The ecological component of the dataset includes plant-pollinator interaction data and flowering phenology data from the same ten farming villages as well as the results of a pollinator exclusion field experiment in fifteen replicate sites along an altitudinal gradient in this region. \n\nTaken together, these datasets enable us to understand more about:\n a) people’s diets, nutritional status and socioeconomic status in rural Nepal;\n b) which crops provide their nutrients and how these crops are grown;\n c) which insects pollinate these crops, and;\n d) how climate change is likely to impact the system.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","National Science Foundation","Academy of Finland","Bristol Centre for Agricultural Innovation","Belmont Forum Collaborative Research Action on Climate, Environment and Health"],"grant":["NE/T013621/1"],"identifier":"d7434d83-c30d-4186-aab0-9764821cd807","incomingCitationCount":0,"givenName":["J.","T.P.","S.","L.","D.R.","A.","K.B.","D.C.","P.","R.","S.B.","K.","D.","M.","N.","S.S.","F.","T.","M.R.","Y.D.","E."],"familyName":["Memmott","Timberlake","Baral","Bhandari","Bhusal","Bohara","Bohora","Budha","Cirtwill","Devkota","Giri","Joshi","Kami","Karti","Kathayat","Khadka","Kortsch","Mahatara","Manandhar","Myers","Nepali","Rawat","Rokaya","Roslin","Sapkota","Saville","Smith","Tamang","Thapa","Villa-Galaviz"],"fullName":["Memmott, J.","Timberlake, T.P.","Baral, S.","Bhandari, L.","Bhusal, D.R.","Bohara, S.","Bohora, A.","Bohora, K.B.","Bohora, S.","Budha, D.C.","Budha, P.","Budha, R.","Budha, S.","Budha, S.B.","Cirtwill, A.","Devkota, K.","Giri, S.","Joshi, D.","Kami, S.","Karti, R.","Kathayat, M.","Khadka, J.","Kortsch, S.","Mahatara, N.","Manandhar, S.","Myers, S.S.","Nepali, S.","Rawat, F.","Rokaya, S.","Roslin, T.","Sapkota, S.","Saville, N.","Smith, M.R.","Tamang, A.","Tamang, Y.D.","Thapa, S.","Villa-Galaviz, E."],"keyword":["Nepal","Jumla","Climate and climate change","Agriculture","Environmental survey","Phenology","Pollinators","nutrition","Beekeeping","Micronutrients"],"keywordsPlace":["Nepal","Jumla"],"keywordsTheme":["Climate and climate change","Agriculture","Environmental survey","Phenology","Pollinators"],"keywordsOther":["nutrition","Beekeeping","Micronutrients"],"licence":"Open government licence","lineage":"The datasets were collected by a team of 20 full-time field staff as part of the Micro-Poll Project (The Pollination of Nepal’s Micronutrient-rich Crops in a Changing Climate) which was funded by the Natural Environment Research Council (NERC) [NE/T013621/1], National Science Foundation (NSF) and Academy of Finland (AKA); coordinated through the Belmont Forum Climate, Environment and Health Collaborative Research Action, with further funding from Bristol Centre for Agricultural Innovation. \n\nData were collected in this field and input on smartphones using a custom-built data collection app in CommCare Version 2.48.3 (http://www.commcarehq.org/home/) and uploaded to a secure private server. Data were subsequently anonymised (where relevant) by a data manager from HERD International, Nepal to remove all person-identifiable information and then cleaned to remove errors. Where relevant, datasets were merged and summarised to aid analysis and interpretation.","locations":["POLYGON((82.184 29.269, 82.184 29.349, 82.381 29.349, 82.381 29.269, 82.184 29.269))"],"orcid":["https://orcid.org/0000-0002-2113-2577","https://orcid.org/0000-0001-8166-0825","https://orcid.org/0000-0001-5448-1530","https://orcid.org/0000-0002-1772-3868","https://orcid.org/0000-0002-7365-0851","https://orcid.org/0000-0002-6495-4781","https://orcid.org/0000-0002-5808-2454","https://orcid.org/0000-0002-2957-4791","https://orcid.org/0000-0002-7148-3789","https://orcid.org/0000-0002-1735-3684","https://orcid.org/0000-0001-5207-2370","https://orcid.org/0000-0002-2783-7877"],"organisation":["University of Bristol","HERD International","Tribhuvan University","University of Helsinki","Agriculture and Forestry University","Harvard University","University College London","Technical University of Darmstadt","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/d7434d83-c30d-4186-aab0-9764821cd807","10.5285/d7434d83-c30d-4186-aab0-9764821cd807"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Bristol"],"ror":["https://ror.org/0524sp257","https://ror.org/02rg1r889","https://ror.org/040af2s02","https://ror.org/01f60xs15","https://ror.org/03vek6s52","https://ror.org/02jx3x895","https://ror.org/05n911h24","https://ror.org/04xw4m193"],"state":"published","title":"Ecological, dietary, and socio-economic data from 10 smallholder farming villages in Jumla District, Nepal, 2021-2022","topic":["0/Climate and climate change/","0/Agriculture/","0/Environmental survey/","0/Phenology/","0/Pollinators/"],"version":1.0,"view":["public","eidc-staff"],"shortenedDescription":"This is a transdisciplinary dataset from ten smallholder farming villages in Patarasi Rural Municipality, Jumla District, Nepal collected during 2021 and 2022. The human component of the dataset includes fortnightly 24-hour dietary recall surveys and monthly anthropometry..."},{"publicationDate":"2023-12-20T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Butterfly Conservation"],"authorGivenName":["M.","I.","C.","R.","D.B."],"authorFamilyName":["Botham","Middlebrook","Harrower","Conway","Roy"],"authorFullName":["Botham, M.","Middlebrook, I.","Harrower, C.","Conway, R.","Roy, D.B."],"authorOrcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-5147-0331"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/05jg03a59"],"catalogue":"eidc","description":"This dataset provides data on the timing of butterfly flight periods for each UK butterfly species across all monitored sites in the UK Butterfly Monitoring Scheme (UKBMS). Annual data from over 2,500 sites are presented relating to the timing (first appearance, last appearance, date of peak abundance and mean flight date) and the duration (total number of days, standard deviation around the mean flight date) of the flight period for all UK butterfly species from 1976 to 2022. In addition, these data are divided each year for eleven multi-voltine species to provide separate phenology data for distinct flight periods associated with first and subsequent generations.\n\nPhenology change is a widely used measure of the biological impacts of climate change because of the close relationship between temperature and the timing of biological events. This dataset provides an invaluable tool for assessing the impacts of climate change both spatially and temporally.\n\nThe UK Butterfly Monitoring Scheme is organized and funded by Butterfly Conservation (BC), the UK Centre for Ecology & Hydrology (UKCEH), the British Trust for Ornithology (BTO), and the Joint Nature Conservation Committee (JNCC). The UKBMS is indebted to all volunteers who contribute data to the scheme.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Butterfly Conservation","Joint Nature Conservation Committee"],"grant":["NE/R016429/1"],"identifier":"31cf8abb-892a-48fc-98e9-62312f51a6fb","incomingCitationCount":0,"givenName":["M.","I.","C.","R.","D.B."],"familyName":["Botham","Middlebrook","Harrower","Conway","Roy"],"fullName":["Botham, M.","Middlebrook, I.","Harrower, C.","Conway, R.","Roy, D.B."],"keyword":["UK-SCAPE","Biodiversity","Phenology","England","Northern Ireland","Scotland","United Kingdom","Wales","butterfly","lepidopteran"],"keywordsProject":["UK-SCAPE"],"keywordsTheme":["Biodiversity","Phenology"],"keywordsOther":["England","Northern Ireland","Scotland","United Kingdom","Wales","butterfly","lepidopteran"],"licence":"Non-Open government licence","lineage":"Phenology data include measurements of the timing and duration of flight periods for each butterfly species at each site in each year it was recorded there. Data on timing include the first day and last day on which a given species was recorded at each site in each year, the day on which the greatest (peak) count of each species was recorded for each site in each year, and the mean flight date (a weighted mean day number) for each species at each site in each year. Data on the duration of flight periods include the standard deviation around the mean flight date and the number of days (range) between the first and last days on which a species was recorded on a given site in each year it was recorded there.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-5147-0331"],"organisation":["UK Centre for Ecology & Hydrology","Butterfly Conservation","NERC EDS Environmental Information Data Centre","British Trust for Ornithology","Natural Environment Research Council","Joint Nature Conservation Committee"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/31cf8abb-892a-48fc-98e9-62312f51a6fb","10.5285/31cf8abb-892a-48fc-98e9-62312f51a6fb"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Butterfly Conservation","British Trust for Ornithology","Natural Environment Research Council","Joint Nature Conservation Committee"],"ror":["https://ror.org/00pggkr55","https://ror.org/05jg03a59","https://ror.org/04xw4m193"],"state":"published","supplementalName":["UKBMS website"],"title":"United Kingdom Butterfly Monitoring Scheme: phenology 2022","topic":["0/Biodiversity/","0/Phenology/"],"version":1.0,"view":["public","jenroe"],"shortenedDescription":"This dataset provides data on the timing of butterfly flight periods for each UK butterfly species across all monitored sites in the UK Butterfly Monitoring Scheme (UKBMS). Annual data from over 2,500 sites are presented relating to the timing (first appearance, last..."},{"publicationDate":"2024-08-23T00:00:00.000+00:00","authorAffiliation":["University of Liverpool","The Australian National University","Aarhus University","Netherlands Institute of Ecology","University of Leeds","University of Zurich","University of St Andrews","University of East Anglia","Universidade de Lisboa","Martin-Luther University Halle-Wittenberg","University of Bristol","University of Münster","Vrije Universiteit Amsterdam","University of Padova","University of Lincoln","Université de Rennes","The University of New South Wales","Stockholm University"],"authorGivenName":["F.","D. W. A.","M. F.","M.","J.","S.","A.","C. H.","B. J.","P.","I.","H.","B.","E.","Z. V.","G.","A. N.","N.","S A.","R. R.","T. A. R.","L. R."],"authorFamilyName":["Frost","Noble","Schou","Rowe","Rees","Lüpold","Chatten","Smithson","Cole","Simões","Lindenbaum","Koppik","Weaving","Canal Domenech","Churchill","Zizzari","Ellers","Gigliotti","Graziano","Iossa","De Nardo","Pilakouta","Meena","Ramm","Nakagawa","Bretman","Fricke","Snook","Price","Dougherty"],"authorFullName":["Frost, F.","Noble, D.W.A.","Schou, M.F.","Rowe, M.","Rees, J.","Lüpold, S.","Chatten, A.","Smithson, C.H.","Cole, B.J.","Simões, P.","Lindenbaum, I.","Koppik, M.","Weaving, H.","Canal Domenech, B.","Churchill, E.","Zizzari, Z.V.","Ellers, J.","Gigliotti, S.","Graziano, M.","Iossa, G.","De Nardo, A.N.","Pilakouta, N.","Meena, A.","Ramm, S.A.","Nakagawa, S.","Bretman, A.","Fricke, F.","Snook, R.R.","Price, T.A.R.","Dougherty, L.R."],"authorOrcid":["https://orcid.org/0000-0003-2382-2990","https://orcid.org/0000-0001-9460-8743","https://orcid.org/0000-0001-5521-5269","https://orcid.org/0000-0001-9747-041X","https://orcid.org/0009-0008-0212-2446","https://orcid.org/0000-0002-5069-1992","https://orcid.org/0009-0003-5378-0661","https://orcid.org/0000-0002-0032-8124","https://orcid.org/0000-0002-2747-2580","https://orcid.org/0000-0002-4253-1200","https://orcid.org/0000-0002-3433-7248","https://orcid.org/0000-0002-9093-0556","https://orcid.org/0000-0003-1447-5704","https://orcid.org/0000-0003-0910-8600","https://orcid.org/0000-0002-9945-3071","https://orcid.org/0000-0003-2665-1971","https://orcid.org/0009-0004-4726-8204","https://orcid.org/0000-0001-8850-9036","https://orcid.org/0000-0001-6813-4361","https://orcid.org/0000-0003-3708-1492","https://orcid.org/0000-0001-8503-520X","https://orcid.org/0000-0001-9731-3924","https://orcid.org/0000-0001-7786-7364","https://orcid.org/0000-0002-7765-5182","https://orcid.org/0000-0002-4421-3337","https://orcid.org/0000-0002-0691-6779","https://orcid.org/0000-0003-1852-1448","https://orcid.org/0000-0002-4394-6301","https://orcid.org/0000-0003-1406-0680"],"authorRor":["https://ror.org/04xs57h96","https://ror.org/019wvm592","https://ror.org/01aj84f44","https://ror.org/01g25jp36","https://ror.org/024mrxd33","https://ror.org/02crff812","https://ror.org/02wn5qz54","https://ror.org/026k5mg93","https://ror.org/01c27hj86","https://ror.org/05gqaka33","https://ror.org/0524sp257","https://ror.org/00pd74e08","https://ror.org/008xxew50","https://ror.org/03yeq9x20","https://ror.org/015m7wh34","https://ror.org/03r8z3t63","https://ror.org/05f0yaq80"],"catalogue":"eidc","description":"This dataset contains extracted data from studies reporting the effect of temperature on animal reproduction and adult lifespan. To identify studies, we performed a systematic literature search using the online database Web of Science in August 2021 (see Dougherty et al. (2024) for details). From this search, 781 studies were screened, and 339 studies met our inclusion criteria. These studies all experimentally manipulate temperature in a laboratory setting, usually for more than five days. The studies tested 308 species in total, all of which are invertebrates, mostly from the order Insecta (77%) or Arachnida (15%). \n\nFrom these studies we extracted reported data for the average reproductive output and adult lifespan (plus associated variances and sample sizes) for each tested temperature treatment. Means and variances were then converted into standardised effect sizes for further meta-analysis. We used the standardised mean difference (SMD) in reproduction or adult lifespan between pairwise temperature treatments as the effect size (response variable). SMDs were calculated in a pairwise fashion in relation to a single ‘reference’ treatment. The reference treatment was assigned as: a) the treatment closest to the rearing temperature of the study population, or b) the treatment with a temperature closest to 25℃ (in the absence of a reported rearing temperature).\n\nFor each effect size, we also report information relating to the focal species (e.g. taxonomic group, focal sex, habitat, fertilisation mode) and relevant methodological details (e.g. experimental temperature, exposure duration, which life stage was exposed).\n\nThe dataset consists of all data needed to repeat the meta-analyses: two csv files containing extracted effect size data, and two phylogenetic trees showing the relationships between the species included in the analysis.\n\nThis work was funded by the Natural Environment Research Council (NE/X011550/1 & NE/P002692/1), the Biotechnology and Biological Sciences Research Council (BB/W016753/1), the Australian Research Council (Future Fellowship FT220100276), the German Research Foundation (DFG, Heisenberg fellowship FR 2973/11-1), and the European Society for Evolutionary Biology.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Australian Research Council","German Research Foundation","European Society for Evolutionary Biology"],"grant":["NE/P002692/1","NE/X011550/1","BB/W016753/1","FT220100276","FR 2973/11-1"],"identifier":"59abe798-1b39-4555-b3a6-8c301a61bcaa","incomingCitationCount":1,"givenName":["F.","D. W. A.","M. F.","M.","J.","S.","A.","C. H.","B. J.","P.","I.","H.","B.","E.","Z. V.","G.","A. N.","N.","S A.","R. R.","T. A. R.","L. R."],"familyName":["Frost","Noble","Schou","Rowe","Rees","Lüpold","Chatten","Smithson","Cole","Simões","Lindenbaum","Koppik","Weaving","Canal Domenech","Churchill","Zizzari","Ellers","Gigliotti","Graziano","Iossa","De Nardo","Pilakouta","Meena","Ramm","Nakagawa","Bretman","Fricke","Snook","Price","Dougherty"],"fullName":["Frost, F.","Noble, D.W.A.","Schou, M.F.","Rowe, M.","Rees, J.","Lüpold, S.","Chatten, A.","Smithson, C.H.","Cole, B.J.","Simões, P.","Lindenbaum, I.","Koppik, M.","Weaving, H.","Canal Domenech, B.","Churchill, E.","Zizzari, Z.V.","Ellers, J.","Gigliotti, S.","Graziano, M.","Iossa, G.","De Nardo, A.N.","Pilakouta, N.","Meena, A.","Ramm, S.A.","Nakagawa, S.","Bretman, A.","Fricke, F.","Snook, R.R.","Price, T.A.R.","Dougherty, L.R."],"keyword":["Phenology","Biodiversity","Evolutionary ecology","Animal behaviour","Climate and climate change","meta-analysis","animal reproduction","temperature","heat stress","cold stress","climate change impact","egg","animal population"],"keywordsTheme":["Phenology","Biodiversity","Evolutionary ecology","Animal behaviour","Climate and climate change"],"keywordsOther":["meta-analysis","animal reproduction","temperature","heat stress","cold stress","climate change impact","egg","animal population"],"licence":"Open government licence","lineage":"The project used a sample of papers collected following a systematic literature search by Dougherty et al. (2024). We searched this database for any studies which reported temperature effects on both reproduction and longevity/survival of the same species. We then extracted all relevant effect size data from these papers. Altogether, we extracted data from 339 studies and for 308 invertebrate species.","orcid":["https://orcid.org/0000-0003-2382-2990","https://orcid.org/0000-0001-9460-8743","https://orcid.org/0000-0001-5521-5269","https://orcid.org/0000-0001-9747-041X","https://orcid.org/0009-0008-0212-2446","https://orcid.org/0000-0002-5069-1992","https://orcid.org/0009-0003-5378-0661","https://orcid.org/0000-0002-0032-8124","https://orcid.org/0000-0002-2747-2580","https://orcid.org/0000-0002-4253-1200","https://orcid.org/0000-0002-3433-7248","https://orcid.org/0000-0002-9093-0556","https://orcid.org/0000-0003-1447-5704","https://orcid.org/0000-0003-0910-8600","https://orcid.org/0000-0002-9945-3071","https://orcid.org/0000-0003-2665-1971","https://orcid.org/0009-0004-4726-8204","https://orcid.org/0000-0001-8850-9036","https://orcid.org/0000-0001-6813-4361","https://orcid.org/0000-0003-3708-1492","https://orcid.org/0000-0001-8503-520X","https://orcid.org/0000-0001-9731-3924","https://orcid.org/0000-0001-7786-7364","https://orcid.org/0000-0002-7765-5182","https://orcid.org/0000-0002-4421-3337","https://orcid.org/0000-0002-0691-6779","https://orcid.org/0000-0003-1852-1448","https://orcid.org/0000-0002-4394-6301","https://orcid.org/0000-0003-1406-0680"],"organisation":["University of Liverpool","The Australian National University","Aarhus University","Netherlands Institute of Ecology","University of Leeds","University of Zurich","University of St Andrews","University of East Anglia","Universidade de Lisboa","Martin-Luther University Halle-Wittenberg","University of Bristol","University of Münster","Vrije Universiteit Amsterdam","University of Padova","University of Lincoln","Université de Rennes","The University of New South Wales","Stockholm University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/59abe798-1b39-4555-b3a6-8c301a61bcaa","10.5285/59abe798-1b39-4555-b3a6-8c301a61bcaa"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Liverpool"],"ror":["https://ror.org/04xs57h96","https://ror.org/019wvm592","https://ror.org/01aj84f44","https://ror.org/01g25jp36","https://ror.org/024mrxd33","https://ror.org/02crff812","https://ror.org/02wn5qz54","https://ror.org/026k5mg93","https://ror.org/01c27hj86","https://ror.org/05gqaka33","https://ror.org/0524sp257","https://ror.org/00pd74e08","https://ror.org/008xxew50","https://ror.org/03yeq9x20","https://ror.org/015m7wh34","https://ror.org/03r8z3t63","https://ror.org/05f0yaq80","https://ror.org/04xw4m193"],"state":"published","title":"Reproductive output and adult lifespan of 308 invertebrate species subjected to temperature variations, from a meta-analysis of published literature","topic":["0/Phenology/","0/Biodiversity/","0/Evolutionary ecology/","0/Animal behaviour/","0/Climate and climate change/"],"version":1.0,"view":["public","rafbar"],"shortenedDescription":"This dataset contains extracted data from studies reporting the effect of temperature on animal reproduction and adult lifespan. To identify studies, we performed a systematic literature search using the online database Web of Science in August 2021 (see Dougherty et..."},{"publicationDate":"2025-01-21T00:00:00.000+00:00","authorAffiliation":["University of Edinburgh","UK Centre for Ecology & Hydrology"],"authorGivenName":["J.","A. ","S."],"authorFamilyName":["Shortman","Perry","Cavers"],"authorFullName":["Shortman, J.","Perry, A.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/01nrxwf90","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains phenotypic data on Scots pine cones and seeds sampled from individual trees in a long-term common garden trial. For each tree, overall cone counts were conducted and five cones were sampled in February 2024. Seventeen phenotypic traits were measured for each cone between June and July 2024. Traits include cone length, cone width, cone dry weight, scale length, scale width, scale count, stalk length, profile and colour, seed number and mean seed weight. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V019813/1"],"identifier":"b98e92cf-6ff5-42e2-8053-021ea04db01c","incomingCitationCount":0,"givenName":["J.","A. ","S."],"familyName":["Shortman","Perry","Cavers"],"fullName":["Shortman, J.","Perry, A.","Cavers, S."],"keyword":["Scotland","Phenology","genetic variation","Caledonian pinewood","common garden experiment","phenotype","Pinus sylvestris","reproductive traits","Scots pine"],"keywordsPlace":["Scotland"],"keywordsTheme":["Phenology"],"keywordsOther":["genetic variation","Caledonian pinewood","common garden experiment","phenotype","Pinus sylvestris","reproductive traits","Scots pine"],"licence":"Open government licence","lineage":"A long-term common garden trial was established in 2012 at Yair (latitude 55.603625, longitude -2.893025), using five-year-old saplings. It contains trees from 8 families (where a family comprises individuals grown from seed sampled from a single common tree) from each of 21 Scottish pinewoods and is arranged into four complete randomised blocks (see supporting document for reference). \n\nOver four days in February 2024, cone number was measured as a count of all visible cones on the south-facing side of each tree. Then, five cones were sampled from each tree for trait measurement. Cone length, cone width, cone dry weight, scale length, scale width, scale count, stalk length, profile, colour, seed number and mean seed weight were all recorded for every cone. Cone ratio (cone width / length) and seed viability (number of filled seeds / number of empty seeds) were also recorded. ","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2139-9236"],"organisation":["University of Edinburgh","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b98e92cf-6ff5-42e2-8053-021ea04db01c","10.5285/b98e92cf-6ff5-42e2-8053-021ea04db01c"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/01nrxwf90","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: cone and seed phenotypes, 2024 ","topic":["0/Phenology/"],"version":1.0,"view":["public","katwri"],"shortenedDescription":"This dataset contains phenotypic data on Scots pine cones and seeds sampled from individual trees in a long-term common garden trial. For each tree, overall cone counts were conducted and five cones were sampled in February 2024. Seventeen phenotypic traits were measured..."},{"publicationDate":"2025-06-19T00:00:00.000+00:00","authorAffiliation":["University of Plymouth","CSIR Forestry Research Institute of Ghana","University of Leeds"],"authorGivenName":["S.","W.","S.A.","E.U.","R.","P."],"authorFamilyName":["Fauset","Hagan Brown","Addo-Danso","Gloor","Fyfe","Ganderton"],"authorFullName":["Fauset, S.","Hagan Brown, W.","Addo-Danso, S.A.","Gloor, E.U.","Fyfe, R.","Ganderton, P."],"authorOrcid":["https://orcid.org/0000-0003-4246-1828","https://orcid.org/0000-0003-4399-0182","https://orcid.org/0000-0001-5074-1673"],"catalogue":"eidc","description":"The dataset provides image data from a visible light camera positioned on a tower at Bobiri Forest Reserve, Ghana between November 2022 and November 2023. The images are predominately made up of tree canopies (leaves, branches, stems). This site is a moist semi-deciduous tropical forest. The field of view of the camera includes a plot, which was lightly selectively logged over 60 years ago. The trees included in the field of view are of a variety of species including both deciduous and evergreen species. Data were collected to complement additional data on canopy temperature at the same site but can also be used to look at vegetation phenology. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V008366/1"],"identifier":"f4d2b769-8df8-4fd0-bf75-673926a6977b","incomingCitationCount":0,"givenName":["S.","W.","S.A.","E.U.","R.","P."],"familyName":["Fauset","Hagan Brown","Addo-Danso","Gloor","Fyfe","Ganderton"],"fullName":["Fauset, S.","Hagan Brown, W.","Addo-Danso, S.A.","Gloor, E.U.","Fyfe, R.","Ganderton, P."],"keyword":["West Africa","Ghana","Climate and climate change","Environmental survey","Phenology","phenology","tropical","canopy","semi-deciduous","ecophysiology","tropical forest","forest"],"keywordsPlace":["West Africa","Ghana"],"keywordsTheme":["Climate and climate change","Environmental survey","Phenology"],"keywordsOther":["phenology","tropical","canopy","semi-deciduous","ecophysiology","tropical forest","forest"],"licence":"Open government licence","lineage":"Data were collected using a LabView program to control the camera. Data were initially stored on a local PC, and then transferred to a University of Plymouth network server. Data provided are the raw output from the camera.","locations":["POLYGON((1.29 6.64, 1.29 6.74, 1.37 6.74, 1.37 6.64, 1.29 6.64))"],"orcid":["https://orcid.org/0000-0003-4246-1828","https://orcid.org/0000-0003-4399-0182","https://orcid.org/0000-0001-5074-1673"],"organisation":["University of Plymouth","CSIR Forestry Research Institute of Ghana","University of Leeds","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f4d2b769-8df8-4fd0-bf75-673926a6977b","10.5285/f4d2b769-8df8-4fd0-bf75-673926a6977b"],"resourceStatus":"Embargoed","resourceType":"Dataset","rightsHolder":["University of Plymouth"],"ror":["https://ror.org/04xw4m193","https://ror.org/008n7pv89"],"state":"published","title":"Visible light images of a moist semi-deciduous tropical forest canopy, Bobiri Forest Reserve, Ghana, 2022-2023","topic":["0/Climate and climate change/","0/Environmental survey/","0/Phenology/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"The dataset provides image data from a visible light camera positioned on a tower at Bobiri Forest Reserve, Ghana between November 2022 and November 2023. The images are predominately made up of tree canopies (leaves, branches, stems). This site is a moist semi-deciduous..."},{"publicationDate":"2022-11-21T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Butterfly Conservation"],"authorGivenName":["M.","I.","C.","D.B."],"authorFamilyName":["Botham","Middlebrook","Harrower","Roy"],"authorFullName":["Botham, M.","Middlebrook, I.","Harrower, C.","Roy, D.B."],"authorOrcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-5147-0331"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/05jg03a59"],"catalogue":"eidc","description":"This dataset provides data on the timing of butterfly flight periods for each UK butterfly species across all monitored sites in the UK Butterfly Monitoring Scheme (UKBMS). Annual data from over 2,500 sites are presented relating to the timing (first appearance, last appearance, date of peak abundance and mean flight date) and the duration (total number of days, standard deviation around the mean flight date) of the flight period for all UK butterfly species from 1976 to 2021. In addition, this data is divided each year for eleven multi-voltine species to provide separate phenology data for distinct flight periods associated with first and subsequent generations.\n\nPhenology change is a widely used measure of the biological impacts of climate change because of the close relationship between temperature and the timing of biological events. This dataset provides an invaluable tool for assessing the impacts of climate change both spatially and temporally.\n\nThe UK Butterfly Monitoring Scheme is organized and funded by Butterfly Conservation (BC), the UK Centre for Ecology & Hydrology (UKCEH), the British Trust for Ornithology (BTO), and the Joint Nature Conservation Committee (JNCC). The UKBMS is indebted to all volunteers who contribute data to the scheme.\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.\n\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"0c59eb20-26e3-4066-86f5-418afae18769","incomingCitationCount":0,"givenName":["M.","I.","C.","D.B.","Marc"],"familyName":["Botham","Middlebrook","Harrower","Roy"],"fullName":["Botham, M.","Middlebrook, I.","Harrower, C.","Roy, D.B."],"keyword":["UK-SCAPE","Phenology","Biodiversity","England","Northern Ireland","Scotland","United Kingdom","Wales","biodiversity","butterfly","lepidopteran"],"keywordsProject":["UK-SCAPE"],"keywordsTheme":["Phenology","Biodiversity"],"keywordsOther":["England","Northern Ireland","Scotland","United Kingdom","Wales","biodiversity","butterfly","lepidopteran"],"licence":"Non-Open government licence","lineage":"Phenology data include measurements of the timing and duration of flight periods for each butterfly species at each site in each year it was recorded there. Data on timing include the first day and last day on which a given species was recorded at each site in each year, the day on which the greatest (peak) count of each species was recorded for each site in each year, and the mean flight date (a weighted mean day number) for each species at each site in each year. Data on the duration of flight periods include the standard deviation around the mean flight date and the number of days (range) between the first and last days on which a species was recorded on a given site in each year it was recorded there.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-5147-0331"],"organisation":["UK Centre for Ecology & Hydrology","Butterfly Conservation","NERC EDS Environmental Information Data Centre","British Trust for Ornithology","Natural Environment Research Council","Joint Nature Conservation Committee"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0c59eb20-26e3-4066-86f5-418afae18769","10.5285/0c59eb20-26e3-4066-86f5-418afae18769"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Butterfly Conservation","British Trust for Ornithology","Natural Environment Research Council","Joint Nature Conservation Committee"],"ror":["https://ror.org/00pggkr55","https://ror.org/05jg03a59","https://ror.org/04xw4m193"],"state":"published","supplementalName":["UKBMS website"],"title":"United Kingdom Butterfly Monitoring Scheme: phenology 2021","topic":["0/Phenology/","0/Biodiversity/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset provides data on the timing of butterfly flight periods for each UK butterfly species across all monitored sites in the UK Butterfly Monitoring Scheme (UKBMS). Annual data from over 2,500 sites are presented relating to the timing (first appearance, last..."},{"publicationDate":"2021-08-13T00:00:00.000+00:00","authorAffiliation":["Butterfly Conservation","UK Centre for Ecology & Hydrology"],"authorGivenName":["P.M.","G.M.","A.M.","M.S.","E.B.","R.","N.A.D."],"authorFamilyName":["Cook","Tordoff","Davis","Parsons","Dennis","Fox","Botham","Bourn"],"authorFullName":["Cook, P.M.","Tordoff, G.M.","Davis, A.M.","Parsons, M.S.","Dennis, E.B.","Fox, R.","Botham, M.S.","Bourn, N.A.D."],"authorOrcid":["https://orcid.org/0000-0002-7510-1020","https://orcid.org/0000-0003-2692-4415","https://orcid.org/0000-0001-6992-3522","https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0003-1416-6047"],"authorRor":["https://ror.org/05jg03a59","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Here, we present a comprehensive traits database for the butterflies and macro-moths of Great Britain and Ireland. The database covers 968 species in 21 families. Ecological traits fall into four main categories: life cycle ecology and phenology, host plant specificity and characteristics, breeding habitat, and morphological characteristics. The database also contains data regarding species distribution, conservation status, and temporal trends for abundance and occupancy. This database can be used for a wide array of purposes including further fundamental research on species and community responses to environmental change, conservation and management studies, and evolutionary biology.\n\nA more recent version of the dataset is available at https://doi.org/10.5285/33a66d6a-dd9b-4a19-9026-cf1ffb969cdb entitled 'Traits data for the butterflies and macro-moths of Great Britain and Ireland, 2022'.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/N018125/1"],"identifier":"5b5a13b6-2304-47e3-9c9d-35237d1232c6","incomingCitationCount":0,"givenName":["P.M.","G.M.","A.M.","M.S.","E.B.","R.","N.A.D."],"familyName":["Cook","Tordoff","Davis","Parsons","Dennis","Fox","Botham","Bourn"],"fullName":["Cook, P.M.","Tordoff, G.M.","Davis, A.M.","Parsons, M.S.","Dennis, E.B.","Fox, R.","Botham, M.S.","Bourn, N.A.D."],"keyword":["Phenology","database","moths","trait","trend","lepidopteran","butterfly","ecology"],"keywordsTheme":["Phenology"],"keywordsOther":["database","moths","trait","trend","lepidopteran","butterfly","ecology"],"licence":"Open government licence","lineage":"Data were collected from a range of locations including published journal articles, identification and field guides, books, reports and websites. In some cases expert opinion was sought for clarification, particularly in relation to habitat variables.","locations":["POLYGON((-11.812 49.237, -11.812 61.244, 3.262 61.244, 3.262 49.237, -11.812 49.237))"],"orcid":["https://orcid.org/0000-0002-7510-1020","https://orcid.org/0000-0003-2692-4415","https://orcid.org/0000-0001-6992-3522","https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0003-1416-6047"],"organisation":["Butterfly Conservation","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/5b5a13b6-2304-47e3-9c9d-35237d1232c6","10.5285/5b5a13b6-2304-47e3-9c9d-35237d1232c6"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Butterfly Conservation"],"ror":["https://ror.org/05jg03a59","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Traits data for the butterflies and macro-moths of Great Britain and Ireland, 2021","topic":["0/Phenology/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"Here, we present a comprehensive traits database for the butterflies and macro-moths of Great Britain and Ireland. The database covers 968 species in 21 families. Ecological traits fall into four main categories: life cycle ecology and phenology, host plant specificity..."},{"publicationDate":"2025-06-17T00:00:00.000+00:00","authorAffiliation":["University of Plymouth","University of Birmingham","University of Leeds"],"authorGivenName":["S.","W.","A.R.","E.U.","R.","P."],"authorFamilyName":["Fauset","Hagan Brown","MacKenzie","Gloor","Fyfe","Ganderton"],"authorFullName":["Fauset, S.","Hagan Brown, W.","MacKenzie, A.R.","Gloor, E.U.","Fyfe, R.","Ganderton, P."],"authorOrcid":["https://orcid.org/0000-0003-4246-1828","https://orcid.org/0000-0003-4399-0182","https://orcid.org/0000-0002-8227-742X"],"authorRor":["https://ror.org/008n7pv89","https://ror.org/03angcq70","https://ror.org/024mrxd33"],"catalogue":"eidc","description":"The dataset provides visible light images from a camera at the Birmingham Institute for Forest Research Free Air CO2 Enrichment (BIFoR-FACE) experimental site from July 2021 to September 2023. The data are visible light images, predominately of tree canopies (leaves, branches, stems). \n\nThis site is a mature oak woodland, and the field of view of the camera includes one of the experimental CO2 enrichment plots, and numerous trees in the ambient un-enriched air. The trees included in the field of view are predominantly Quercus robur, with some individuals of Acer pseudoplatanus and Pinus sylvestris. \n\nData were collected to complement additional data on canopy temperature at the same site but can also be used to look at vegetation phenology. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V008366/1"],"identifier":"4b251915-10af-4bf1-8ad6-be1c65542247","incomingCitationCount":0,"givenName":["S.","W.","A.R.","E.U.","R.","P."],"familyName":["Fauset","Hagan Brown","MacKenzie","Gloor","Fyfe","Ganderton"],"fullName":["Fauset, S.","Hagan Brown, W.","MacKenzie, A.R.","Gloor, E.U.","Fyfe, R.","Ganderton, P."],"keyword":["West Africa","Ghana","Phenology","Environmental survey","canopy","FACE","CO2","Quercus robur","ecophysiology","oak","carbon dioxide","forest","woodland ecosystem"],"keywordsPlace":["West Africa","Ghana"],"keywordsTheme":["Phenology","Environmental survey"],"keywordsOther":["Phenology","canopy","FACE","CO2","Quercus robur","ecophysiology","oak","carbon dioxide","forest","woodland ecosystem"],"licence":"Open government licence","lineage":"Data were collected using a LabView program to control the camera. Data were initially stored on a local PC, and then transferred to a University of Plymouth network server. Data provided are the raw output from the camera.","locations":["POLYGON((-2.307 52.789, -2.307 52.804, -2.286 52.804, -2.286 52.789, -2.307 52.789))"],"orcid":["https://orcid.org/0000-0003-4246-1828","https://orcid.org/0000-0003-4399-0182","https://orcid.org/0000-0002-8227-742X"],"organisation":["University of Plymouth","University of Birmingham","University of Leeds","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/4b251915-10af-4bf1-8ad6-be1c65542247","10.5285/4b251915-10af-4bf1-8ad6-be1c65542247"],"resourceStatus":"Embargoed","resourceType":"Dataset","rightsHolder":["University of Plymouth"],"ror":["https://ror.org/008n7pv89","https://ror.org/03angcq70","https://ror.org/024mrxd33","https://ror.org/04xw4m193"],"state":"published","supplementalName":["Birmingham Institute for Forest Research Free Air CO2 Enrichment (BIFoR-FACE) website"],"title":"Visible light images of a mature oak woodland canopy under Free-Air CO2 Enrichment at the BIFoR-FACE experimental site, Staffordshire, UK, 2021-2023","topic":["0/Phenology/","0/Environmental survey/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"The dataset provides visible light images from a camera at the Birmingham Institute for Forest Research Free Air CO2 Enrichment (BIFoR-FACE) experimental site from July 2021 to September 2023. The data are visible light images, predominately of tree canopies (leaves,..."},{"publicationDate":"2021-08-31T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.","G.","S."],"authorFamilyName":["Perry","Beaton","Iason","Cottrell","Stockan","Cavers"],"authorFullName":["Perry, A.","Beaton, J.","Iason, G.","Cottrell, J.","Stockan, J.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744"],"catalogue":"eidc","description":"This dataset contains data pertaining to the phenotypes (height and budburst) and genotypes (via SNP array) for a subset of trees from a long term multi-site Scots pine experimental trial.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/K012177/1"],"identifier":"52248442-a50f-4fc0-a73e-31c61cd27df9","incomingCitationCount":0,"givenName":["A.","J.","G.","S."],"familyName":["Perry","Beaton","Iason","Cottrell","Stockan","Cavers"],"fullName":["Perry, A.","Beaton, J.","Iason, G.","Cottrell, J.","Stockan, J.","Cavers, S."],"keyword":["Phenology","budburst","height","SNP array","genotypes","Scots pine"],"keywordsTheme":["Phenology"],"keywordsOther":["budburst","height","SNP array","genotypes","Scots pine"],"licence":"Open government licence","lineage":"A multi-site field trial was established at three sites in Scotland in 2012 using five year old Scots pine trees.  Each site contains 8 families from each of 21 native Caledonian pinewood provenances. Two of the sites (Glensaugh and Yair) have four randomised blocks and the other (Inverewe) has three randomised blocks. \n\nThis dataset relates to a subset of trees (N = 208) from two of the sites (Glensaugh, N = 108; Yair, N = 100).  Glensaugh (latitude 56.893567, longitude -2.535736) and Yair (latitude 55.603625, longitude -2.893025)\n\nPhenotypes (height and budburst) were assessed in situ at each site in spring (budburst) and winter (height) between 2015 and 2020. \n\nTrees were genotyped using a multi-species SNP array (Perry et al., 2020). DNA was extracted from needles using a Qiagen DNeasy 96 kit following the manufacturer’s instructions. Needles were dried on silica gel prior to extraction and DNA was quantified using a Qubit spectrophotometer to ensure a minimum standardized concentration of 35ng/µl. The quality of genomic DNA was also checked visually for fragmentation on 1 % agarose gel.\n\nGenotyping was done at Edinburgh Genomics following DNA amplification, fragmentation, chip hybridisation, single-base extension through DNA ligation and signal amplification performed according to the Affymetrix Axiom® Assay protocol. Genotyping was performed in 384-well format on a GeneTitan according to the manufacturer’s procedure. Genotype calls were performed using Axiom Analysis Suite software as recommended by the manufacturer (ThermoFisher). Samples were assigned to an analysis group based on their call rate (CR) and dish QC (DQC: a metric provided by ThermoFisher which is generated by measuring signals at multiple sites in the genome known not to vary among individuals), using the following thresholds: DQC ‘high’ ≥ 0.82; DQC ‘low’ < 0.82; CR ‘high’ ≥ 96; CR ‘low’ < 96. Analyses: 1) DQC high + CR high; 2) DQC high + CR low; 3) DQC low + CR low. High quality samples (N=529), with high CR and DQC, were used to set thresholds for allele calls. Posteriors for allele calls were subsequently used as priors for analyses 2 (N = 753) and 3 (N = 251).\n","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/52248442-a50f-4fc0-a73e-31c61cd27df9","10.5285/52248442-a50f-4fc0-a73e-31c61cd27df9"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine single nucleotide polymorphism (SNP) genotypes and phenotypes for marker-trait association analysis","topic":["0/Phenology/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset contains data pertaining to the phenotypes (height and budburst) and genotypes (via SNP array) for a subset of trees from a long term multi-site Scots pine experimental trial."},{"publicationDate":"2022-10-11T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744"],"catalogue":"eidc","description":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government"],"grant":["NE/K012177/1","BB/L012243/1"],"identifier":"1c9367fb-ea87-47a1-8257-d9fed54215e7","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Phenology","Pinus sylvestris","Scots pine","Caledonian pinewood","adaptive trait variation","phenotype","common garden experiment","growth","phenology","tree"],"keywordsTheme":["Phenology"],"keywordsOther":["Pinus sylvestris","Scots pine","Caledonian pinewood","adaptive trait variation","phenotype","common garden experiment","growth","phenology","tree"],"licence":"Open government licence","lineage":"A multi-site field trial was established at three sites in Scotland in 2012 using five year old Scots pine trees. Each site contains 8 families from each of 21 native Caledonian pinewood provenances. Two of the sites (FE and FS) have four randomised blocks and the other (FW) has three randomised blocks.\n\nTree height and basal stem diameter were measured at the end of each growing season from 2013 to 2020 for trees growing at two of the field sites (FE and FW) and in 2020 for trees growing at the third (FS). \n\nPhenology assessments were performed in spring at each site from 2015 to 2019 (the survey was not completed in 2020 due to the COVID-19 pandemic).\n","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre","The James Hutton Institute"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1c9367fb-ea87-47a1-8257-d9fed54215e7","10.5285/1c9367fb-ea87-47a1-8257-d9fed54215e7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: field phenotypes, 2013-2020, version 2","topic":["0/Phenology/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020."},{"publicationDate":"2021-10-08T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["C.","J."],"authorFamilyName":["Andrews","Dick"],"authorFullName":["Andrews, C.","Dick, J."],"authorOrcid":["https://orcid.org/0000-0003-2428-272X","https://orcid.org/0000-0002-4180-9338"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset includes the dates and/or duration of all the environmental and phenological events that could be derived from a series of photographs taken by a fixed-point repeat camera system at the UK Environmental Change Network (ECN) site in the Cairngorms National Park, Scotland.  \n\nThe data covers the timing of permanent winter snow fall and subsequent spring melt on northern and eastern facing hill slopes between 2002 and 2019, as well as invertebrate (spittlebug spittlemass) and plant (heather flowering, scots pine leaf flushing) phenological events between 2010 and 2019.\n\nThree photographs were taken on a daily basis to maximise the chances of cloud free images, with the clearest image used for analysis.  Event detection was generally achieved using manual assessment, but heather flowering showed a high degree of subjectivity, and so an automated pixel colour counting method was used to determine the peak flowering season.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"8e30cead-700c-425c-841f-74c70659666a","incomingCitationCount":0,"givenName":["C.","J.","Christopher"],"familyName":["Andrews","Dick"],"fullName":["Andrews, C.","Dick, J."],"keyword":["Cairngorms ECN site","Phenology","Spittlemass","Scots pine","Heather","snow"],"keywordsPlace":["Cairngorms ECN site"],"keywordsTheme":["Phenology"],"keywordsOther":["Phenology","Spittlemass","Scots pine","Heather","snow"],"licence":"Open government licence","lineage":"Where data were missed on the automatic repeat photography system due to obscuring weather or a system failure, secondary manual photographs taken during weekly site visits were used to provide bridging data of snow conditions.  Where melt day occurred between two weekly images, the day of melt was subjectively estimated based on size of remnant patches in the final image containing snow; and would carry an error of ±3-4 days.\n\nThe camera system was upgraded in 2010.  Phenological data could not be established on the earlier camera system due to image quality issues in the foreground.  However, the change in camera had no impact on the detection of snow events pre- and post- upgrade, so the full time-series is useable.\n\nData was checked for obvious errors where values might have fallen outside of an expected range.  As most of this dataset involved manual assessment, the event detection date is as perceived by that surveyor.  A different surveyor might find a slightly different date for some variables.  Surveyor differences have not been assessed.\n","locations":["POLYGON((-3.86 57.07, -3.86 57.11, -3.8 57.11, -3.8 57.07, -3.86 57.07))"],"orcid":["https://orcid.org/0000-0003-2428-272X","https://orcid.org/0000-0002-4180-9338"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8e30cead-700c-425c-841f-74c70659666a","10.5285/8e30cead-700c-425c-841f-74c70659666a"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"UK Environmental Change Network (ECN) Cairngorm environmental and phenological data derived from fixed-point repeat photography, 2002-2019","topic":["0/Phenology/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset includes the dates and/or duration of all the environmental and phenological events that could be derived from a series of photographs taken by a fixed-point repeat camera system at the UK Environmental Change Network (ECN) site in the Cairngorms National..."},{"publicationDate":"2021-08-31T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University"],"authorGivenName":["A.","W.","K.","S."],"authorFamilyName":["Perry","Wachowiak","Donnelly","Cavers"],"authorFullName":["Perry, A.","Wachowiak, W.","Donnelly, K.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains details of the phenotypes (height, bud set and budburst) and genotypes (via SNP array) of trees from a common garden multi-species pine (Pinus sylvestris, Pinus mugo and Pinus uncinata) glasshouse trial between 2010 and 2013.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/K012177/1"],"identifier":"55118e26-cf5c-41d6-9157-738fce6bdddf","incomingCitationCount":0,"givenName":["A.","W.","K.","S."],"familyName":["Perry","Wachowiak","Donnelly","Cavers"],"fullName":["Perry, A.","Wachowiak, W.","Donnelly, K.","Cavers, S."],"keyword":["Phenology","budburst","height","SNP array","genotypes","Scots pine"],"keywordsTheme":["Phenology"],"keywordsOther":["budburst","height","SNP array","genotypes","Scots pine"],"licence":"Open government licence","lineage":"A common garden glasshouse trial was established in 2010 using seed from natural populations from three species of pine: Pinus sylvestris (SY), Pinus mugo (MU), Pinus uncinata (UN). Open-pollinated seeds were collected from three to five trees per population from twenty-eight natural populations in Europe covering the geographic range of each species. The collection consisted of thirteen populations of SY, nine MU, and six UN. The trial was divided into 25 randomized blocks with up to five families per population, of which the first 18 blocks were analysed by Wachowiak et al. (2018a).\n\nPhenotypes (height, bud set and budburst) were assessed in the glasshouse during spring (budburst), autumn (bud set) and winter (height) between 2010 and 2013. \n\nA subset of trees were selected to be genotyped using a multi-species SNP array. Trees were genotyped using a multi-species SNP array (Perry et al., 2020). DNA was extracted from needles using a Qiagen DNeasy 96 kit following the manufacturer’s instructions. Needles were dried on silica gel prior to extraction and DNA was quantified using a Qubit spectrophotometer to ensure a minimum standardized concentration of 35ng/µl. The quality of genomic DNA was also checked visually for fragmentation on 1 % agarose gel.\n\nGenotyping was done at Edinburgh Genomics following DNA amplification, fragmentation, chip hybridisation, single-base extension through DNA ligation and signal amplification performed according to the Affymetrix Axiom® Assay protocol. Genotyping was performed in 384-well format on a GeneTitan according to the manufacturer’s procedure. Genotype calls were performed using Axiom Analysis Suite software as recommended by the manufacturer (ThermoFisher). Samples were assigned to an analysis group based on their call rate (CR) and dish QC (DQC: a metric provided by ThermoFisher which is generated by measuring signals at multiple sites in the genome known not to vary among individuals), using the following thresholds: DQC ‘high’ ≥ 0.82; DQC ‘low’ < 0.82; CR ‘high’ ≥ 96; CR ‘low’ < 96. Analyses: 1) DQC high + CR high; 2) DQC high + CR low; 3) DQC low + CR low. High quality samples (N=529), with high CR and DQC, were used to set thresholds for allele calls. Posteriors for allele calls were subsequently used as priors for analyses 2 (N = 753) and 3 (N = 251).","locations":["POLYGON((-3.358 55.877, -3.358 56.003, -3.013 56.003, -3.013 55.877, -3.358 55.877))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/55118e26-cf5c-41d6-9157-738fce6bdddf","10.5285/55118e26-cf5c-41d6-9157-738fce6bdddf"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Single nucleotide polymorphism (SNP) genotypes and phenotypes for marker-trait association analysis of three pine species grown in a glasshouse","topic":["0/Phenology/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset contains details of the phenotypes (height, bud set and budburst) and genotypes (via SNP array) of trees from a common garden multi-species pine (Pinus sylvestris, Pinus mugo and Pinus uncinata) glasshouse trial between 2010 and 2013."},{"publicationDate":"2020-02-19T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Royal Botanic Gardens Edinburgh","University of Edinburgh"],"authorGivenName":["J.","A.","J.R.","M.","C.E.","S."],"authorFamilyName":["Wilson","Perry","Shepherd","Duran-Castillo","Jeffree","Cavers"],"authorFullName":["Wilson, J.","Perry, A.","Shepherd, J.R.","Duran-Castillo, M.","Jeffree, C.E.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0001-5706-5874","https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Data were collected to determine the geographic distribution of different cytotypes of Campanula rotundifolia L. Most sampling concentrated on Britain and Ireland, but samples from mainland Europe, the Russian Federation and North America were also analysed. Following these observations, a common garden study of tetraploid, pentaploid and hexaploid cytotypes representative of Britain and Ireland was set up at a CEH Edinburgh (where the local cytotype is tetraploid), to determine whether climatic factors were limiting the distribution of the hexaploid cytotype through effects on growth, survival or flowering phenology.\nThe geographic distribution study ran from 2006-2019. The common garden study ran from 2008-2010. \n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"673b2b31-562c-4604-8776-4a92988867b8","incomingCitationCount":0,"givenName":["Julia","J.","A.","J.R.","M.","C.E.","S."],"familyName":["Wilson","Perry","Shepherd","Duran-Castillo","Jeffree","Cavers"],"fullName":["Wilson, J.","Perry, A.","Shepherd, J.R.","Duran-Castillo, M.","Jeffree, C.E.","Cavers, S."],"keyword":["Biodiversity","Phenology","Harebell"],"keywordsTheme":["Biodiversity","Phenology"],"keywordsOther":["Harebell"],"licence":"Open government licence","lineage":"For Britain and Ireland, field collection were guided by use of Botanical Society of Britain and Ireland  distribution maps and an understanding of habitat preferences. Cytotypes were determined by flow cytometry and supported by chromosome counts. Data were partitioned into diploid, tetraploid, pentaploid and hexaploid, and intermediate aneuploids. All samples were run with internal reference standards, and analyses were re-run or discarded if the cv > 5%. In the common garden study shoot dry weights and numbers of flowers, flower buds, seed heads and flowering stems were determined. Flowering phenology was assessed by observation of first flowering date, when the first flower was sufficiently open to be entered by bees.","locations":["POLYGON((-107.76 37.38, -107.76 65.1, 87.6 65.1, 87.6 37.38, -107.76 37.38))"],"orcid":["https://orcid.org/0000-0001-5706-5874","https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","Royal Botanic Gardens Edinburgh","University of Edinburgh","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/673b2b31-562c-4604-8776-4a92988867b8","10.5285/673b2b31-562c-4604-8776-4a92988867b8"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Campanula rotundifolia cytotype, distribution and first flowering dates v2","topic":["0/Biodiversity/","0/Phenology/"],"version":2.0,"view":["public","clwe"],"shortenedDescription":"Data were collected to determine the geographic distribution of different cytotypes of Campanula rotundifolia L. Most sampling concentrated on Britain and Ireland, but samples from mainland Europe, the Russian Federation and North America were also analysed. Following..."},{"publicationDate":"2020-10-19T00:00:00.000+00:00","authorAffiliation":["University of Exeter","University of Campinas","Australian National University","University of Sao Paulo","Museu Paraense Emílio Goeldi","EMBRAPA","Federal University of Para","Centre for Research on Ecology and Forestry Applications (CREAF)"],"authorGivenName":["L.","R.S.","P.R.L.","A.L.","I.","P.","T.","L.V.","S.S.","J.A.S.","A.A.R.","A.C.L.","M."],"authorFamilyName":["Rowland","Oliveira","Bittencourt","Giles","Coughlin","de Britto Costa","Domingues","Ferreira","Vasconcelos","Junior","da Costa","Meir","Mencuccini"],"authorFullName":["Rowland, L.","Oliveira, R.S.","Bittencourt, P.R.L.","Giles, A.L.","Coughlin, I.","de Britto Costa, P.","Domingues, T.","Ferreira, L.V.","Vasconcelos, S.S.","Junior, J.A.S.","Oliveira, A.A.R.","da Costa, A.C.L.","Meir, P.","Mencuccini, M."],"authorOrcid":["https://orcid.org/0000-0002-0774-3216","https://orcid.org/0000-0002-6392-2526","https://orcid.org/0000-0002-2362-0398","https://orcid.org/0000-0003-0840-1477"],"authorRor":["https://ror.org/03yghzc09","https://ror.org/019wvm592","https://ror.org/036rp1748","https://ror.org/010gvqg61","https://ror.org/0482b5b22","https://ror.org/03q9sr818","https://ror.org/03abrgd14"],"catalogue":"eidc","description":"Data comprise tree trait data collected during September and October 2016 (the peak dry season), in the Caxiuanã National Forest Reserve, eastern Amazon, Brazil. \n17 traits (including plot type, tree species name, diameter at breast height, tree light score, carboxylation capacity, electron transport capacity, leaf respiration in the dark, stomatal conductance, stem CO2 efflux, leaf mass per area, leaf nitrogen and phosphorus content, branch wood density, leaf water potential, xylem pressure, lumen conductance, percentage loss of conductivity, hydraulic Safety Margin and leaf area to sapwood area ratio) of 176 trees (most common genera) were sampled across two experimental plots: a one-hectare through-fall exclusion plot with a plastic panel structure that excludes 50% of the canopy through-fall and has done since 2002 and a corresponding one-hectare control plot without any drought structure. \n\nThis data comes from the Caxiuanã through-fall exclusion (TFE) experiment located in the terra firma forest, on yellow oxisol soils at 15 m above sea level, with a mean annual rainfall between 2,000–2,500 mm and a pronounced dry season between June and November.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/N014022/1"],"identifier":"441565b3-0a7d-4d3c-a7a8-7d7b487c1462","incomingCitationCount":1,"givenName":["L.","R.S.","P.R.L.","A.L.","I.","P.","T.","L.V.","S.S.","J.A.S.","A.A.R.","A.C.L.","M."],"familyName":["Rowland","Oliveira","Bittencourt","Giles","Coughlin","de Britto Costa","Domingues","Ferreira","Vasconcelos","Junior","da Costa","Meir","Mencuccini"],"fullName":["Rowland, L.","Oliveira, R.S.","Bittencourt, P.R.L.","Giles, A.L.","Coughlin, I.","de Britto Costa, P.","Domingues, T.","Ferreira, L.V.","Vasconcelos, S.S.","Junior, J.A.S.","Oliveira, A.A.R.","da Costa, A.C.L.","Meir, P.","Mencuccini, M."],"keyword":["Caxiuanã National Forest Reserve","Brazil","Phenology","plant functional traits","light availability","intra‐specific variation","tree growth","drought","tropical forest","climate change","tree","light"],"keywordsPlace":["Caxiuanã National Forest Reserve","Brazil"],"keywordsTheme":["Phenology"],"keywordsOther":["plant functional traits","light availability","intra‐specific variation","tree growth","drought","tropical forest","climate change","tree","light"],"licence":"Open government licence","lineage":"To sample the traits, three branches from the same tree were gathered at three specific time periods each day in September and October 2016.  Stem CO2 efflux measurements (Rstem) were made in October 2016 using a gas analyser attached in a close loop system to a 75cm2 area of each of our study trees. Growth rates were calculated for each tree using mean stem increment data measured every three months using dendrometers, as presented in Rowland et al., (https://doi.org/10.1038/nature15539). Mean growth increment was calculated by averaging three-monthly growth rate data from 2010-2016 for each tree and then log-transforming these data.","locations":["POLYGON((-62.403 -12.039, -62.403 7.188, -41.133 7.188, -41.133 -12.039, -62.403 -12.039))"],"orcid":["https://orcid.org/0000-0002-0774-3216","https://orcid.org/0000-0002-6392-2526","https://orcid.org/0000-0002-2362-0398","https://orcid.org/0000-0003-0840-1477"],"organisation":["University of Exeter","University of Campinas","Australian National University","University of Sao Paulo","Museu Paraense Emílio Goeldi","EMBRAPA","Federal University of Para","Centre for Research on Ecology and Forestry Applications (CREAF)","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/441565b3-0a7d-4d3c-a7a8-7d7b487c1462","10.5285/441565b3-0a7d-4d3c-a7a8-7d7b487c1462"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/03yghzc09","https://ror.org/019wvm592","https://ror.org/036rp1748","https://ror.org/010gvqg61","https://ror.org/0482b5b22","https://ror.org/03q9sr818","https://ror.org/03abrgd14","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Rowland et al. Nature 528, 119–122 (2015). ","Rowland et al. Global Change Biology, 21, 12. (2015)"],"supplementalName":["Death from drought in tropical forests is triggered by hydraulics not carbon starvation","After more than a decade of soil moisture deficit, tropical rainforest trees maintain photosynthetic capacity, despite increased leaf respiration"],"title":"Traits data from trees exposed to a 50% reduction in canopy throughfall for 14 years in Caxiuanã, Brazil, September to October 2016","topic":["0/Phenology/"],"version":1.0,"view":["public","matnic"],"shortenedDescription":"Data comprise tree trait data collected during September and October 2016 (the peak dry season), in the Caxiuanã National Forest Reserve, eastern Amazon, Brazil. \n17 traits (including plot type, tree species name, diameter at breast height, tree light score, carboxylation..."},{"publicationDate":"2022-04-29T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government"],"grant":["NE/K012177/1","BB/L012243/1"],"identifier":"f463bc5c-bb79-4967-a8dc-f662f57f7020","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Phenology","Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth"],"keywordsTheme":["Phenology"],"keywordsOther":["Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth"],"licence":"Open government licence","lineage":"A multi-site field trial was established at three sites in Scotland in 2012 using five year old Scots pine trees. Each site contains 8 families from each of 21 native Caledonian pinewood provenances. Two of the sites (FE and FS) have four randomised blocks and the other (FW) has three randomised blocks.\nTree height and basal stem diameter were measured at the end of each growing season from 2013 to 2020 for trees growing at two of the field sites (FE and FW) and in 2020 for trees growing at the third (FS). \nPhenology assessments were performed in spring at each site from 2015 to 2019 (the survey was not completed in 2020 due to the COVID-19 pandemic).\n","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","The James Hutton Institute","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f463bc5c-bb79-4967-a8dc-f662f57f7020","10.5285/f463bc5c-bb79-4967-a8dc-f662f57f7020"],"resourceStatus":"Superseded","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: field phenotypes, 2013-2020","topic":["0/Phenology/"],"version":1.0,"view":["public","matnic"],"shortenedDescription":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020."},{"publicationDate":"2022-02-04T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Butterfly Conservation"],"authorGivenName":["M.","I.","C.","D.B."],"authorFamilyName":["Botham","Middlebrook","Harrower","Roy"],"authorFullName":["Botham, M.","Middlebrook, I.","Harrower, C.","Roy, D.B."],"authorOrcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-5147-0331"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/05jg03a59"],"catalogue":"eidc","description":"This dataset provides data on the timing of butterfly flight periods for each UK butterfly species across all monitored sites in the UK Butterfly Monitoring Scheme (UKBMS). Annual data from over 2,500 sites are presented relating to the timing (first appearance, last appearance, date of peak abundance and mean flight date) and the duration (total number of days, standard deviation around the mean flight date) of the flight period for all UK butterfly species from 1976 to the present year. In addition, this data is divided each year for eleven multi-voltine species to provide separate phenology data for distinct flight periods associated with first and subsequent generations.\n\nPhenology change is a widely used measure of the biological impacts of climate change because of the close relationship between temperature and the timing of biological events. This dataset provides an invaluable tool for assessing the impacts of climate change both spatially and temporally.\n\nThe UK Butterfly Monitoring Scheme is organized and funded by Butterfly Conservation (BC), the UK Centre for Ecology & Hydrology (UKCEH), the British Trust for Ornithology (BTO), and the Joint Nature Conservation Committee (JNCC). The UKBMS is indebted to all volunteers who contribute data to the scheme.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"b13ffd72-62bf-47d1-948b-d9d84dd12af7","incomingCitationCount":0,"givenName":["M.","I.","C.","D.B."],"familyName":["Botham","Middlebrook","Harrower","Roy"],"fullName":["Botham, M.","Middlebrook, I.","Harrower, C.","Roy, D.B."],"keyword":["UK-SCAPE","Phenology","Biodiversity","England","Northern Ireland","Scotland","United Kingdom","Wales","biodiversity","butterfly","lepidopteran"],"keywordsProject":["UK-SCAPE"],"keywordsTheme":["Phenology","Biodiversity"],"keywordsOther":["England","Northern Ireland","Scotland","United Kingdom","Wales","biodiversity","butterfly","lepidopteran"],"licence":"Non-Open government licence","lineage":"Phenology data include measurements of the timing and duration of flight periods for each butterfly species at each site in each year it was recorded there. Data on timing include the first day and last day on which a given species was recorded at each site in each year, the day on which the greatest (peak) count of each species was recorded for each site in each year, and the mean flight date (a weighted mean day number) for each species at each site in each year. Data on the duration of flight periods include the standard deviation around the mean flight date and the number of days (range) between the first and last days on which a species was recorded on a given site in each year it was recorded there.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-5147-0331"],"organisation":["UK Centre for Ecology & Hydrology","Butterfly Conservation","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b13ffd72-62bf-47d1-948b-d9d84dd12af7","10.5285/b13ffd72-62bf-47d1-948b-d9d84dd12af7"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/05jg03a59","https://ror.org/04xw4m193"],"state":"published","supplementalName":["UKBMS website"],"title":"United Kingdom Butterfly Monitoring Scheme: phenology 2020","topic":["0/Phenology/","0/Biodiversity/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset provides data on the timing of butterfly flight periods for each UK butterfly species across all monitored sites in the UK Butterfly Monitoring Scheme (UKBMS). Annual data from over 2,500 sites are presented relating to the timing (first appearance, last..."},{"publicationDate":"2018-03-09T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["S."],"authorFamilyName":["Robinson"],"authorFullName":["Robinson, S."],"authorOrcid":["https://orcid.org/0000-0002-7365-8423"],"authorRor":["https://ror.org/052gg0110"],"catalogue":"eidc","description":"This dataset describes environmental conditions at 135 Saiga antelope calving sites  (from a total of 214) in Kazakhstan where the predictor variables required for the modelling were available at sufficient resolution. Data collected included climatic variables associated with haemorrhagic septicaemia in the literature, including humidity, temperature and precipitation.  Indicators of vegetation biomass, phenology and length of the winter preceding calving were represented using the Normalised Difference Vegetation Index (NDVI), snow depth and snow presence data. \n\nSaiga antelope are susceptible to mass mortality events (MME), the most severe of which are caused by haemorrhagic septicaemia following infection by the bacteria Pasteurella multocida. These die-off events tend to occur in May during calving, when saigas gather in dense aggregations. As the bacteria is a commensal organism, which may live harmlessly in the respiratory tract of the saiga, it is believed that an environmental trigger is involved in a shift to virulence in the pathogen or reduction in immune-competence in the host.\n\nThe attached data show environmental conditions at a set of calving sites of the Betpak-dala population of saigas. This population, one of three in Kazakhstan, is located in the central provinces of the country and is the only one in which massive haemorrhagic septicaemia outbreaks have been recorded. At most of the recorded sites, calving progressed normally, whilst at others mass mortality events occurred during calving or just afterwards, namely in 1981, 1988 and 2015. A set of environmental predictor variables was used to model the probability of an MME at calving aggregations. The dataset, modelling process and results are described in Kock et al. (2018): http://advances.sciencemag.org/content/4/1/eaao2314  \n\nA related shapefile of the full set of 214 sites, and metadata concerning site characteristics and the provenance of the location data is available at:\nhttps://catalogue.ceh.ac.uk/id/8ad12782-e939-4834-830a-c89e503a298b\n\nThe attached dataset and site metadata in the above-mentioned Shapefile attribute table can be combined using the variable ID in order to merge the environmental data with information on the calving and MME sites.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Association for the Conservation of Biodiversity of the Republic of Kazakhstan","Flora and Fauna International, Cambridge, UK","People's Trust for Endangered Species","Frankfurt Zoological Society","The Saiga Conservation Alliance, UK"],"grant":["NE/N007646/1"],"identifier":"912ea336-ac90-418f-be6a-7ae226e167e9","incomingCitationCount":0,"givenName":["Sara","S."],"familyName":["Robinson"],"fullName":["Robinson, S."],"keyword":["Kazakhstan","Phenology","Environmental variables","Saiga antelope"],"keywordsPlace":["Kazakhstan"],"keywordsTheme":["Phenology"],"keywordsOther":["Environmental variables","Saiga antelope"],"licence":"Open government licence","lineage":"Given the large geographic scale of the study, range of variables to be covered, long time series coverage and high resolution, the daily ERA-Interim reanalysis dataset, produced at the European Centre for Medium-Range Weather Forecasts (ECMWF), was selected as a source of climate data (Dee et al., 2011). Daily aggregates (means, maxima, minima, or totals) were generated from raw 3 or 6 hourly data for temperature, dew point temperature, soil moisture, snow depth, maximum wind gust and precipitation.  Due to uncertainties in precipitation data from this source, interpolated gauge-based products from the Global Precipitation Climatology Centre (GPCC), which are independent of ERA data, were also used, although these were available only from 1988 onwards (Schamm et al., 2014). \n\nAbsolute NDVI values at calving/MME sites were obtained using a dataset of 7 day filtered and smoothed MODIS NDVI products from the University of Natural Resources and Life Sciences, Vienna (Vuolo et al., 2012). These data are included in the attached dataset but were not used in final models, they cover the period 2001-2016 and cover a subset of 94 sites.\n\nNDVI anomaly data based on SPOT and PROBA-V data were supplied by the Université Catholique de Louvain-LifeWatch Wallonia-Brussels (WB) project (Radoux et al., 2015). Snow anomaly data (unusual values at the date of observation compared to mean probability of snow presence) were used to look for unusual variation in winter (e.g. winter length, severity, sudden cold shocks) and were derived by LifeWatch WB from filtered MODIS data (Rousseau et al., 2015). These datasets cover periods from 1998-2016 and 2000-2016 respectively and thus include only 2015 MME sites and a set of controls - covering a subset of 96 & 95 sites. ","locations":["POLYGON((60.392 45.165, 60.392 51.282, 76.324 51.282, 76.324 45.165, 60.392 45.165))"],"orcid":["https://orcid.org/0000-0002-7365-8423"],"organisation":["University of Oxford","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/912ea336-ac90-418f-be6a-7ae226e167e9","10.5285/912ea336-ac90-418f-be6a-7ae226e167e9"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/052gg0110","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Kock, R. A., Orynbayev, M., Robinson, S., Zuther, S., Singh, N. J., Beauvais, W., ... Milner-Gulland, E. J. (2018). Saigas on the brink: Multidisciplinary analysis of the factors influencing mass mortality events. Science Advances, 4(1), eaao2314. "],"title":"Environmental conditions at saiga calving and die-off sites in Kazakhstan, 1979 to 2016","topic":["0/Phenology/"],"version":1.0,"view":["public","phtr"],"shortenedDescription":"This dataset describes environmental conditions at 135 Saiga antelope calving sites  (from a total of 214) in Kazakhstan where the predictor variables required for the modelling were available at sufficient resolution. Data collected included climatic variables associated..."},{"publicationDate":"2022-05-04T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Phenotypes (growth, phenology and form) for Scots pine trees in a long-term common garden trial grown in three nurseries in Scotland and surveyed from 2007 to 2011.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government"],"grant":["NE/K012177/1"," BB/L012243/1"],"identifier":"29ced467-8e03-4132-83b9-dc2aa50537cd","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Phenology","Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth","Tree form","Tree nursery"],"keywordsTheme":["Phenology"],"keywordsOther":["Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth","Tree form","Tree nursery"],"licence":"Open government licence","lineage":"A multi-site trial was established at three nursery sites in Scotland in 2007 using seed collected from 21 native Caledonian pinewood provenances. Each nursery contained 8 seedlings from each of 10 families per provenance (total 1,680 trees per nursery).\nGrowth (height and stem diameter), tree form (canopy width, needle length, number of buds), and phenology (budburst timing and growth cessation) were measured from 2007 to 2011, although not all traits were recorded in every year. ","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","The James Hutton Institute","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/29ced467-8e03-4132-83b9-dc2aa50537cd","10.5285/29ced467-8e03-4132-83b9-dc2aa50537cd"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","The James Hutton Institute","Forest Research"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: nursery phenotypes, 2007-2011","topic":["0/Phenology/"],"version":1.0,"view":["public","matnic"],"shortenedDescription":"Phenotypes (growth, phenology and form) for Scots pine trees in a long-term common garden trial grown in three nurseries in Scotland and surveyed from 2007 to 2011."},{"publicationDate":"2022-06-22T00:00:00.000+00:00","authorAffiliation":["University of Edinburgh"],"authorGivenName":["A.B.","K.M.","J.M.","J.D."],"authorFamilyName":["Phillimore","Macphie","Samplonius","Shutt","Hadfield"],"authorFullName":["Phillimore, A.B.","Macphie, K.M.","Samplonius, J.M.","Shutt, J.D.","Hadfield, J.D."],"authorOrcid":["https://orcid.org/0000-0002-6553-1553","https://orcid.org/0000-0002-4146-8748","https://orcid.org/0000-0002-7990-2677"],"catalogue":"eidc","description":"This dataset contains data on temperature and tritrophic phenology collected across 44 sites in Scotland for the period 2014 – 2021. Each site was visited every two days through the spring. The phenology of first budburst and leaf out of approx. 700 marked trees was recorded. Every four days marked branches were beaten and data was collected on the number of caterpillars (and spiders and beetles). Data on the breeding phenology (first egg date, hatch date) and breeding success of blue tits was recorded at 4-8 nestboxes per site. \n\nThis work was supported by Natural Environment Research Council grant  NE/P011802/1.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/P011802/1"],"identifier":"b63d53ae-2fe7-4ce9-82a2-2325098489e3","incomingCitationCount":0,"givenName":["A.B.","K.M.","J.M.","J.D.","Albert"],"familyName":["Phillimore","Macphie","Samplonius","Shutt","Hadfield"],"fullName":["Phillimore, A.B.","Macphie, K.M.","Samplonius, J.M.","Shutt, J.D.","Hadfield, J.D.","Phillimore, A."],"keyword":["Phenology","Tritrophic","Scotland"],"keywordsTheme":["Phenology"],"keywordsOther":["Tritrophic","Scotland"],"licence":"Open government licence","lineage":"Hourly temperature data are from two temperature data per site. All temperature profiles are visualized and any unreliable records have been removed in a quality control step.\n\nTree phenology data are from visits on alternate days through the spring.","locations":["POLYGON((-4.45 55.97, -4.45 57.89, -3.36 57.89, -3.36 55.97, -4.45 55.97))"],"orcid":["https://orcid.org/0000-0002-6553-1553","https://orcid.org/0000-0002-4146-8748","https://orcid.org/0000-0002-7990-2677"],"organisation":["University of Edinburgh","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b63d53ae-2fe7-4ce9-82a2-2325098489e3","10.5285/b63d53ae-2fe7-4ce9-82a2-2325098489e3"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Edinburgh"],"ror":["https://ror.org/04xw4m193","https://ror.org/01nrxwf90"],"state":"published","title":"Tritrophic phenology and associated data from 44 sites in Scotland, 2014-2021","topic":["0/Phenology/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains data on temperature and tritrophic phenology collected across 44 sites in Scotland for the period 2014 – 2021. Each site was visited every two days through the spring. The phenology of first budburst and leaf out of approx. 700 marked trees was..."}],"facets":[{"fieldName":"topic","displayName":"Topic","hierarchical":true,"admin":false,"results":[{"name":"Agriculture","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CAssociation+for+the+Conservation+of+Biodiversity+of+the+Republic+of+Kazakhstan&facet=funder%7CFrankfurt+Zoological+Society&facet=funder%7CThe+Saiga+Conservation+Alliance%2C+UK&facet=funder%7CNatural+Environment+Research+Council&facet=funder%7CFlora+and+Fauna+International%2C+Cambridge%2C+UK&facet=topic%7C0%2FPhenology%2F&facet=topic%7C0%2FAgriculture%2F","active":false,"count":69},{"name":"Animal 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