{"numFound":326,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CMedical+Research+Council&facet=recordType%7CDataset&facet=rightsHolder%7CUK+Centre+for+Ecology+%26+Hydrology&facet=funder%7CNatural+Environment+Research+Council&facet=resourceStatus%7CAvailable","nextPage":"http://catalogue.ceh.ac.uk/eidc/documents?page=2&facet=funder%7CMedical+Research+Council&facet=recordType%7CDataset&facet=rightsHolder%7CUK+Centre+for+Ecology+%26+Hydrology&facet=funder%7CNatural+Environment+Research+Council&facet=resourceStatus%7CAvailable","results":[{"publicationDate":"2025-07-11T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Center for Large Landscape Conservation","University of North Texas","University of Aberdeen","Eco2librium Company Ltd","Wildlife Research & Training Institute","Unaffiliated","Kenya Forest Service"],"authorGivenName":["J.M.","P.","R.K."," A.J.","E.S.","C.","J.M.J.","E.","A.","D.","L.","H.","G."],"authorFamilyName":["Bullock","Beier","Broughton","Gregory","Spence","Burkett","Travis","Amutabi","Analo","Atai","Espira","Kipleting","Juma","Lukaria","Makalasia","Malema","Wendot"],"authorFullName":["Bullock, J.M.","Beier, P.","Broughton, R.K.","Gregory, A.J.","Spence, E.S.","Burkett, C.","Travis, J.M.J.","Amutabi, C.","Analo, C.","Atai, E.","Espira, A.","Kipleting, D.","Juma, C.","Lukaria, L.","Makalasia, C.","Malema, H.","Wendot, G."],"authorOrcid":["https://orcid.org/0000-0003-0529-4020","https://orcid.org/0000-0002-4297-4343","https://orcid.org/0000-0002-6838-9628","https://orcid.org/0000-0003-1905-3236","https://orcid.org/0000-0003-1595-0167","https://orcid.org/0000-0002-5785-4272"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/02bv7qz69","https://ror.org/00v97ad02","https://ror.org/016476m91","https://ror.org/0526r9902"],"catalogue":"eidc","description":"This dataset contains information on the trap-setting operations and the number and species of animals captured during systematic sampling surveys in natural habitats of Kenya between 2021 and 2022. The trapping data include dates of setting, checking and removal at multiple locations. Trapping at each location typically involved 3-5 nights per trap line, but this could vary. The trap lines typically comprised 12 pairs of traps each set 10 metres apart along a transect line, with geographical coordinates for the centre of a pair of traps along the trap line. Animals were primarily captured for tissue collection for genetic analysis (not included in this dataset) to investigate the effectiveness of habitat corridors for promoting movement.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","U.S. National Science Foundation (NSF)"],"grant":["NE/T006935/1"],"identifier":"de1d9de7-c0b9-4e53-b848-334bcf120d2c","incomingCitationCount":0,"givenName":["J.M.","P.","R.K."," A.J.","E.S.","C.","J.M.J.","E.","A.","D.","L.","H.","G."],"familyName":["Bullock","Beier","Broughton","Gregory","Spence","Burkett","Travis","Amutabi","Analo","Atai","Espira","Kipleting","Juma","Lukaria","Makalasia","Malema","Wendot"],"fullName":["Bullock, J.M.","Beier, P.","Broughton, R.K.","Gregory, A.J.","Spence, E.S.","Burkett, C.","Travis, J.M.J.","Amutabi, C.","Analo, C.","Atai, E.","Espira, A.","Kipleting, D.","Juma, C.","Lukaria, L.","Makalasia, C.","Malema, H.","Wendot, G."],"keyword":["Biodiversity","Environmental survey","carnivores","forest","animal corridor","habitat corridors","mustelid","rodent","Sherman traps","woodland ecosystem","woodland"],"keywordsTheme":["Biodiversity","Environmental survey"],"keywordsOther":["carnivores","forest","animal corridor","habitat corridors","mustelid","rodent","Sherman traps","woodland ecosystem","woodland"],"licence":"Open government licence","lineage":"Animals were captured during standardized trapping surveys with Sherman traps, and Tomahawk traps in systematic arrays. Trapping targeted small-medium sized rodents, carnivores and opossums. Captured animals were identified to species, marked individually, biometrics were recorded (ear size, hind foot and tail length), and tissue samples were collected, generally from the ear. The animals were then released alive. Trap and capture data are linked via a primary key field.\nAt each trap check, data from captured animals were recorded in the field on data sheets, and then later computerized by entering into spreadsheets. Data were checked against original field records for quality assurance and validation.\n","locations":["POLYGON((33.559 -4.912, 33.559 5.269, 42.084 5.269, 42.084 -4.912, 33.559 -4.912))"],"orcid":["https://orcid.org/0000-0003-0529-4020","https://orcid.org/0000-0002-4297-4343","https://orcid.org/0000-0002-6838-9628","https://orcid.org/0000-0003-1905-3236","https://orcid.org/0000-0003-1595-0167","https://orcid.org/0000-0002-5785-4272"],"organisation":["UK Centre for Ecology & Hydrology","Center for Large Landscape Conservation","University of North Texas","University of Aberdeen","Eco2librium Company Ltd","Wildlife Research & Training Institute","Unaffiliated","Kenya Forest Service","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/de1d9de7-c0b9-4e53-b848-334bcf120d2c"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Center for Large Landscape Conservation"],"ror":["https://ror.org/00pggkr55","https://ror.org/02bv7qz69","https://ror.org/00v97ad02","https://ror.org/016476m91","https://ror.org/0526r9902","https://ror.org/04xw4m193"],"state":"published","title":"Monitoring data from small mammal trapping in forest habitats in Kenya, 2021-2022","topic":["0/Biodiversity/","0/Environmental survey/"],"version":1.0,"view":["public","elsdhi"],"shortenedDescription":"This dataset contains information on the trap-setting operations and the number and species of animals captured during systematic sampling surveys in natural habitats of Kenya between 2021 and 2022. The trapping data include dates of setting, checking and removal at..."},{"publicationDate":"2024-07-31T00:00:00.000+00:00","authorAffiliation":["Kathmandu University","Scotland's Rural College","Bangabandhu Sheikh Mujibur Rahman Agricultural University (BSMRAU)","Indian Agricultural Statistics Research Institute","KIIT University","University of Agriculture Faisalabad","University of Peradeniya","The Maldives National University","Maldives National University","Ricardo (Harwell)","University of Edinburgh","Royal University of Bhutan"],"authorGivenName":["R.","B.","A.","S.","T.","K.","A.R.","S.C.","G.K.","D.","R.N.","V.V.","M.","U.","Z.A.","F.","V."],"authorFamilyName":["Joshi","Nepal","Shrestha","Pokharel","Subodh","Begho","Glenk","Anik","Sharna","Jha","Jena","Subudhi","Giri","Samal","Abbas","Pinnawala","Nissanka","Jayaweera","Wijerathna","Prabavi","Hassan","Rasheed","Shadiya","Fairooza","Avis","Jeffery","Tshering","Dorji","Dendup","Eory"],"authorFullName":["Joshi, R.","Nepal, B.","Shrestha, R.","Pokharel, A.","Subodh, S.","Begho, T.","Glenk, K.","Anik, A.R.","Sharna, S.C.","Jha, G.K.","Jena, D.","Subudhi, R.N.","Giri, V.V.","Samal, S.","Abbas, A.","Pinnawala, M.","Nissanka, S.","Jayaweera, A.","Wijerathna, M.","Prabavi, U.","Hassan, R.","Rasheed, Z.A.","Shadiya, F.","Fairooza, F.","Avis, K.","Jeffery, R.","Tshering, D.","Dorji, T.","Dendup, S.","Eory, V."],"authorRor":["https://ror.org/036xnae80","https://ror.org/044e2ja82","https://ror.org/03kkevc75","https://ror.org/00k8zt527","https://ror.org/054d77k59","https://ror.org/025h79t26","https://ror.org/00dbrh564","https://ror.org/01nrxwf90","https://ror.org/03hqan520"],"catalogue":"eidc","description":"This dataset holds survey data of individual farming households in the Terai region in Nepal relating to their nitrogen use.  The survey was conducted in 2022 and the questions covered two seasons (summer and winter) asked at a single visit in the summer season. The questions on the winter season were based on recall.\nThe data cover the following topics: household characteristics, general farm characteristics, plot characteristics, crop production and harvest, synthetic and organic fertilizer use and compost production, labour, irrigation, pesticides, livestock, information sources, drivers of and barriers to adoption of sustainable practices, attitude, behaviour, perception and opinion, household expenditure and income, household asset and wealth, subsidies.\nThe data were collected primarily to assess differences in nitrogen use efficiency (NUE) and sustainable nitrogen practices between households. The data also aim to enhance understanding of farmers’ attitudes, opinion and decision making affecting NUE in crop production and farm related factors which enable adoption of sustainable practices. \nThe data are part of a wider SANH (South Asian Nitrogen Hub) harmonised household survey covering Bangladesh, India, Maldives, Pakistan and Sri Lanka.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S009019/2"],"identifier":"3b7a3e0b-48e5-4395-b4c6-79bb43ae31e3","incomingCitationCount":0,"givenName":["R.","B.","A.","S.","T.","K.","A.R.","S.C.","G.K.","D.","R.N.","V.V.","M.","U.","Z.A.","F.","V.","Toritseju"],"familyName":["Joshi","Nepal","Shrestha","Pokharel","Subodh","Begho","Glenk","Anik","Sharna","Jha","Jena","Subudhi","Giri","Samal","Abbas","Pinnawala","Nissanka","Jayaweera","Wijerathna","Prabavi","Hassan","Rasheed","Shadiya","Fairooza","Avis","Jeffery","Tshering","Dorji","Dendup","Eory"],"fullName":["Joshi, R.","Nepal, B.","Shrestha, R.","Pokharel, A.","Subodh, S.","Begho, T.","Glenk, K.","Anik, A.R.","Sharna, S.C.","Jha, G.K.","Jena, D.","Subudhi, R.N.","Giri, V.V.","Samal, S.","Abbas, A.","Pinnawala, M.","Nissanka, S.","Jayaweera, A.","Wijerathna, M.","Prabavi, U.","Hassan, R.","Rasheed, Z.A.","Shadiya, F.","Fairooza, F.","Avis, K.","Jeffery, R.","Tshering, D.","Dorji, T.","Dendup, S.","Eory, V."],"keyword":["Nepal","South Asia","Agriculture","agricultural economics","agricultural production","compost","crop production","decision making","economics","fertiliser","gender","livestock","manure","nitrogen","nitrogen use efficiency","subsidies","water"],"keywordsPlace":["Nepal","South Asia"],"keywordsTheme":["Agriculture"],"keywordsOther":["agricultural economics","agricultural production","compost","crop production","decision making","economics","fertiliser","gender","livestock","manure","nitrogen","nitrogen use efficiency","subsidies","water"],"licence":"Open government licence","lineage":"The Terai region was purposively selected for the study as agriculture is dominant in the Terai region. Thereafter, multipurpose random sampling was used to select three districts i.e., Morang, Mahottari and Kailali districts. From each district, two municipalities were selected and from each municipality, two villages were chosen for the study. Twenty-five farming households were randomly chosen within each village. In total, 100 farmers were included from each district, resulting in a total of 300 farmers.\nThe survey was administered in person in farmers’ homes, field or pre-agreed location in the community where the farmer lives. Enumerators entered farmers’ responses to each question in a pre-prepared template which was then transferred to the CSV data file.\nThe data were prepared for the requirements of the study and made ready for analysis by removing duplicate records, spelling errors, differences in capitalisation and spacing, inconsistent formats, mixed numerical scales and mixed ranges.\n","locations":["POLYGON((80.134 28.012, 80.134 29.138, 86.946 29.138, 86.946 28.012, 80.134 28.012))"],"organisation":["Kathmandu University","Scotland's Rural College","Bangabandhu Sheikh Mujibur Rahman Agricultural University (BSMRAU)","Indian Agricultural Statistics Research Institute","KIIT University","University of Agriculture Faisalabad","University of Peradeniya","The Maldives National University","Maldives National University","Ricardo (Harwell)","University of Edinburgh","Royal University of Bhutan","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/3b7a3e0b-48e5-4395-b4c6-79bb43ae31e3","10.5285/3b7a3e0b-48e5-4395-b4c6-79bb43ae31e3"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Scotland's Rural College","Kathmandu University"],"ror":["https://ror.org/036xnae80","https://ror.org/044e2ja82","https://ror.org/03kkevc75","https://ror.org/00k8zt527","https://ror.org/054d77k59","https://ror.org/025h79t26","https://ror.org/00dbrh564","https://ror.org/01nrxwf90","https://ror.org/03hqan520","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Farming household survey for the evaluation of nitrogen options for economic and social benefit in the Terai region of Nepal, 2022","topic":["0/Agriculture/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset holds survey data of individual farming households in the Terai region in Nepal relating to their nitrogen use.  The survey was conducted in 2022 and the questions covered two seasons (summer and winter) asked at a single visit in the summer season. The..."},{"publicationDate":"2022-05-19T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["V.A.","H.N.","M.","T.","H.","O.","E.J.","R.","K.B."],"authorFamilyName":["Bell","Davies","Fry","Zhang","Murphy","Hitt","Hewitt","Chapman","Black"],"authorFullName":["Bell, V.A.","Davies, H.N.","Fry, M.","Zhang, T.","Murphy, H.","Hitt, O.","Hewitt, E.J.","Chapman, R.","Black, K.B."],"authorOrcid":["https://orcid.org/0000-0002-0792-5650","https://orcid.org/0000-0001-7783-4853","https://orcid.org/0000-0003-1142-4039","https://orcid.org/0000-0001-9292-7740","https://orcid.org/0000-0003-3100-4904","https://orcid.org/0000-0002-3842-1420","https://orcid.org/0000-0002-7436-5411"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"The dataset of neutron probe soil moisture observations for 112 sites (428 probe locations) from 1966 to 2013 includes 4 comma-separated tables, derived from the UK Soil Moisture Databank.\n\nThe data include: \n•      Neutron probe readings (number of neutrons) and Volumetric soil moisture content (m3 m-3) at a range of soil depths\n•      Profile moisture content (m3 m-3) to a range of soil depths\n•\tMetadata (includes probe location, maximum depth of readings, soil type, vegetation, start date, end date)\n•\tRelevant publications (references and URL where available) for individual datasets\n\nThe tube site locations are provided as British National Grid references and latitude/longitude in the tube metadata file. Depths of tube readings are provided in metres.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","European Union"],"grant":["NE/N018125/1","603525"],"identifier":"450bb14b-c711-47af-8792-f9bd88482cd4","incomingCitationCount":1,"givenName":["V.A.","H.N.","M.","T.","H.","O.","E.J.","R.","K.B.","Vicky"],"familyName":["Bell","Davies","Fry","Zhang","Murphy","Hitt","Hewitt","Chapman","Black"],"fullName":["Bell, V.A.","Davies, H.N.","Fry, M.","Zhang, T.","Murphy, H.","Hitt, O.","Hewitt, E.J.","Chapman, R.","Black, K.B.","Bell, V."],"keyword":["Soil","Hydrology","UK","Soil-moisture","Neutron-probe"],"keywordsTheme":["Soil","Hydrology"],"keywordsOther":["UK","Soil-moisture","Neutron-probe"],"licence":"Open government licence","lineage":"An archive of neutron probe data for over 400 UK locations has been assembled following a data recovery process. The UKSMD (UK Soil Moisture Databank) consists of neutron probe observations from 1966 to 2013 recovered from fragile magnetic tapes and from disparate spreadsheets and databases. Much of the older data (1960s and 1970s) formed part of a national soil moisture database, “The Soil Moisture Databank (SMDB)” which was previously considered lost, but has since been recovered from old tapes, reassembled, and quality assessed. An additional archive of more-recent neutron probe data for a further 329 probe locations up to 2013 has been retrieved from disparate spreadsheets and databases across UKCEH. All associated data, from the raw digitised neutron probe measurements to volumetric soil moisture data have been quality controlled and converted to standard (SI) units\nSee supporting information for more details.\n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-0792-5650","https://orcid.org/0000-0001-7783-4853","https://orcid.org/0000-0003-1142-4039","https://orcid.org/0000-0001-9292-7740","https://orcid.org/0000-0003-3100-4904","https://orcid.org/0000-0002-3842-1420","https://orcid.org/0000-0002-7436-5411"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/450bb14b-c711-47af-8792-f9bd88482cd4","10.5285/450bb14b-c711-47af-8792-f9bd88482cd4"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Collated neutron probe measurements and derived soil moisture data, UK, 1966-2013","topic":["0/Soil/","0/Hydrology/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"The dataset of neutron probe soil moisture observations for 112 sites (428 probe locations) from 1966 to 2013 includes 4 comma-separated tables, derived from the UK Soil Moisture Databank.\n\nThe data include: \n•      Neutron probe readings (number of neutrons) and Volumetric..."},{"publicationDate":"2020-06-26T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["C.S.","C.G.","R.D.","A.W."],"authorFamilyName":["Rowland","Marston","Morton","O'Neil"],"authorFullName":["Rowland, C.S.","Marston, C.G.","Morton, R.D.","O'Neil, A.W."],"authorOrcid":["https://orcid.org/0000-0002-0459-506X","https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0003-3591-1034"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset consists of the 25m raster, Land Cover Change 1990 -2015 product for Great Britain. The dataset is produced from the Land Cover Map (LCM) 25m raster versions of LCM1990 and LCM2015 and reports Land Cover Change between 1990 and 2015 in six simplified classes. The product consists of five bands:  \n Band 1 – a raster version of LCM1990 in the six simplified classes;\n Band 2 – a raster version of LCM2015 in the six simplified classes;\n Band 3 – a binary layer, where 0 means no change between 1990 and 2015 and 1 means change between 1990 and 2015;\n Band 4 – shows the 'change from' class;\n Band 5 – provides the 'change to' class. \n\nFull details of the Land Cover Change data set are provided in the Land Cover Change data set documentation, which users should consult.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"07b6e5e9-b766-48e5-a28c-5b3e35abecc0","incomingCitationCount":5,"givenName":["Clare","C.S.","C.G.","R.D.","A.W."],"familyName":["Rowland","Marston","Morton","O'Neil"],"fullName":["Rowland, C.","Rowland, C.S.","Marston, C.G.","Morton, R.D.","O'Neil, A.W."],"keyword":["Great Britain","Land cover","Mapping","UK-SCAPE"],"keywordsPlace":["Great Britain"],"keywordsTheme":["Land cover","Mapping"],"keywordsOther":["UK-SCAPE"],"licence":"Non-Open government licence","lineage":"Bands 1 and 2 are derived from the 25m raster versions of the Land Cover Maps for 1990 and 2015 respectively. The LCM data for 1990 and 2015 was cast from the original 21 classes into 6 simplified classes (see dataset documentation for details). \n\nBand 3 (the binary change/no-change layer) maps differences between the simplified classes in 1990 and 2015. Band 3 and Band 1 are then used to create Band 4, the ‘change from' layer, which gives the 1990 class for change. Band 5, the ‘change to' layer,  is calculated from Bands 3 and 2 and provides the 2015 ‘change to' class.\n\nFor further details about LCM1990 and LCM2015 are given in the dataset documents for those products.\n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-0459-506X","https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0003-3591-1034"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/07b6e5e9-b766-48e5-a28c-5b3e35abecc0","10.5285/07b6e5e9-b766-48e5-a28c-5b3e35abecc0"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Land Cover Change 1990-2015 (25m raster, GB)","topic":["0/Land cover/","0/Mapping/"],"version":1.0,"view":["public","clamw"],"shortenedDescription":"This dataset consists of the 25m raster, Land Cover Change 1990 -2015 product for Great Britain. The dataset is produced from the Land Cover Map (LCM) 25m raster versions of LCM1990 and LCM2015 and reports Land Cover Change between 1990 and 2015 in six simplified classes...."},{"publicationDate":"2021-08-31T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University"],"authorGivenName":["A.","W.","K.","S."],"authorFamilyName":["Perry","Wachowiak","Donnelly","Cavers"],"authorFullName":["Perry, A.","Wachowiak, W.","Donnelly, K.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains details of the phenotypes (height, bud set and budburst) and genotypes (via SNP array) of trees from a common garden multi-species pine (Pinus sylvestris, Pinus mugo and Pinus uncinata) glasshouse trial between 2010 and 2013.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/K012177/1"],"identifier":"55118e26-cf5c-41d6-9157-738fce6bdddf","incomingCitationCount":0,"givenName":["A.","W.","K.","S."],"familyName":["Perry","Wachowiak","Donnelly","Cavers"],"fullName":["Perry, A.","Wachowiak, W.","Donnelly, K.","Cavers, S."],"keyword":["Phenology","budburst","height","SNP array","genotypes","Scots pine"],"keywordsTheme":["Phenology"],"keywordsOther":["budburst","height","SNP array","genotypes","Scots pine"],"licence":"Open government licence","lineage":"A common garden glasshouse trial was established in 2010 using seed from natural populations from three species of pine: Pinus sylvestris (SY), Pinus mugo (MU), Pinus uncinata (UN). Open-pollinated seeds were collected from three to five trees per population from twenty-eight natural populations in Europe covering the geographic range of each species. The collection consisted of thirteen populations of SY, nine MU, and six UN. The trial was divided into 25 randomized blocks with up to five families per population, of which the first 18 blocks were analysed by Wachowiak et al. (2018a).\n\nPhenotypes (height, bud set and budburst) were assessed in the glasshouse during spring (budburst), autumn (bud set) and winter (height) between 2010 and 2013. \n\nA subset of trees were selected to be genotyped using a multi-species SNP array. Trees were genotyped using a multi-species SNP array (Perry et al., 2020). DNA was extracted from needles using a Qiagen DNeasy 96 kit following the manufacturer’s instructions. Needles were dried on silica gel prior to extraction and DNA was quantified using a Qubit spectrophotometer to ensure a minimum standardized concentration of 35ng/µl. The quality of genomic DNA was also checked visually for fragmentation on 1 % agarose gel.\n\nGenotyping was done at Edinburgh Genomics following DNA amplification, fragmentation, chip hybridisation, single-base extension through DNA ligation and signal amplification performed according to the Affymetrix Axiom® Assay protocol. Genotyping was performed in 384-well format on a GeneTitan according to the manufacturer’s procedure. Genotype calls were performed using Axiom Analysis Suite software as recommended by the manufacturer (ThermoFisher). Samples were assigned to an analysis group based on their call rate (CR) and dish QC (DQC: a metric provided by ThermoFisher which is generated by measuring signals at multiple sites in the genome known not to vary among individuals), using the following thresholds: DQC ‘high’ ≥ 0.82; DQC ‘low’ < 0.82; CR ‘high’ ≥ 96; CR ‘low’ < 96. Analyses: 1) DQC high + CR high; 2) DQC high + CR low; 3) DQC low + CR low. High quality samples (N=529), with high CR and DQC, were used to set thresholds for allele calls. Posteriors for allele calls were subsequently used as priors for analyses 2 (N = 753) and 3 (N = 251).","locations":["POLYGON((-3.358 55.877, -3.358 56.003, -3.013 56.003, -3.013 55.877, -3.358 55.877))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/55118e26-cf5c-41d6-9157-738fce6bdddf","10.5285/55118e26-cf5c-41d6-9157-738fce6bdddf"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Single nucleotide polymorphism (SNP) genotypes and phenotypes for marker-trait association analysis of three pine species grown in a glasshouse","topic":["0/Phenology/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset contains details of the phenotypes (height, bud set and budburst) and genotypes (via SNP array) of trees from a common garden multi-species pine (Pinus sylvestris, Pinus mugo and Pinus uncinata) glasshouse trial between 2010 and 2013."},{"publicationDate":"2018-12-18T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology"],"authorGivenName":["N.A.","C.L."],"authorFamilyName":["Beresford","Barnett"],"authorFullName":["Beresford, N.A.","Barnett, C.L."],"authorOrcid":["https://orcid.org/0000-0002-8722-0238"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Data comprise concentration ratios for lead and 210Pb in terrestrial wildlife and plants, and residual maximum likelihood (REML) model values for taxons (order, family and genus). Pb was used as an example of the derivation and application of a REML model for terrestrial wildlife species. The model outputs consists of a mean value for each taxa on a common scale after REML adjustment (referred to as the ‘REML mean’) taking account of the random factor (i.e. site).  The REML mean value represents a relative scaling value. \n\nFunding for preparing this data set was provided by the TREE project (http://www.ceh.ac.uk/tree) funded by the NERC, the Environment Agency and Radioactive Waste Management Ltd. under the RATE programme.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/L000318/1"],"identifier":"2bd9bd0e-2c52-4767-ae2e-9c70ba8c358d","incomingCitationCount":1,"givenName":["N.A.","C.L."],"familyName":["Beresford","Barnett"],"fullName":["Beresford, N.A.","Barnett, C.L."],"keyword":["Pollution","Abies","Acacia","Acer","Agrostis","Alnus","Alopecurus","Anas","Anguis","Apis","Apodemus","Aporrectodea","Asparagus","Astrebla","Balanites","Bombus","Bothriochloa","Branta","Briza","Bufo","Calamagrostis","Calluna","Campanula","Capparis","Capreolus","Carlina","Cedrus","Centaurea","Cervus","Chamerion","Cirsium","Cistus","Cladonia","Crataegus","Cynodon","Cytisus","Daphne","Dendrodrilus","Deschampsia","Digitalis","Eragrostis","Erica","Eryngium","Festuca","Ficus","Frankenia","Hordeum","Hypericum","Jasminum","Juncus","Juniperus","Larix","Ledum","Lumbricus","Luzula","Maireana","Microtus","Molinia","Myodes","Myrtus","Odocoileus","Olea","Pelophylax","Phillyrea","Picea","Pinus","Pistacia","Polytrichum","Puccinellia","Quercus","Rana","Rhagodia","Rubia","Rumex","Ruscus","Salix","Schoenoplectus","Senna","Sesbania","Sorex","Tamarix","Taraxacum","Tortula","Trifolium","Triturus","Vaccinium","Viburnum","Vipera","Vitis","Vachellia","Achillia"],"keywordsTheme":["Pollution"],"keywordsOther":["Abies","Acacia","Acer","Agrostis","Alnus","Alopecurus","Anas","Anguis","Apis","Apodemus","Aporrectodea","Asparagus","Astrebla","Balanites","Bombus","Bothriochloa","Branta","Briza","Bufo","Calamagrostis","Calluna","Campanula","Capparis","Capreolus","Carlina","Cedrus","Centaurea","Cervus","Chamerion","Cirsium","Cistus","Cladonia","Crataegus","Cynodon","Cytisus","Daphne","Dendrodrilus","Deschampsia","Digitalis","Eragrostis","Erica","Eryngium","Festuca","Ficus","Frankenia","Hordeum","Hypericum","Jasminum","Juncus","Juniperus","Larix","Ledum","Lumbricus","Luzula","Maireana","Microtus","Molinia","Myodes","Myrtus","Odocoileus","Olea","Pelophylax","Phillyrea","Picea","Pinus","Pistacia","Polytrichum","Puccinellia","Quercus","Rana","Rhagodia","Rubia","Rumex","Ruscus","Salix","Schoenoplectus","Senna","Sesbania","Sorex","Tamarix","Taraxacum","Tortula","Trifolium","Triturus","Vaccinium","Viburnum","Vipera","Vitis","Vachellia","Achillia"],"licence":"Open government licence","lineage":"REML fitting was performed using the IBM SPSS statistical package (version 24) using ‘Linear Mixed Model’ analysis within which REML fitting is a standard option. Because of the data requirements of the REML analyses, as described above, then different amounts of data were available for the runs at genus, family and order levels. The Akaike information criterion (AIC) was used as an estimator of the relative quality of statistical models (the lower the AIC the better the model). To check that including site as a random factor resulted in a better model, all runs were repeated with site removed (ensuring that an intercept was included for the fixed parameter (i.e. taxon)).","locations":["POLYGON((-180 -90, -180 90, 180 90, 180 -90, -180 -90))"],"orcid":["https://orcid.org/0000-0002-8722-0238"],"organisation":["Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre","UK Centre for Ecology & Hydrology"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/2bd9bd0e-2c52-4767-ae2e-9c70ba8c358d","10.5285/2bd9bd0e-2c52-4767-ae2e-9c70ba8c358d"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Data for lead (Pb) in terrestrial wildlife and resultant taxonomic models","topic":["0/Pollution/"],"version":1.0,"view":["public","jgar"],"shortenedDescription":"Data comprise concentration ratios for lead and 210Pb in terrestrial wildlife and plants, and residual maximum likelihood (REML) model values for taxons (order, family and genus). Pb was used as an example of the derivation and application of a REML model for terrestrial..."},{"publicationDate":"2020-06-17T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["R.D.","C.G.","A.W.","C.S."],"authorFamilyName":["Morton","Marston","O'Neil","Rowland"],"authorFullName":["Morton, R.D.","Marston, C.G.","O'Neil, A.W.","Rowland, C.S."],"authorOrcid":["https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3591-1034","https://orcid.org/0000-0002-0459-506X"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This is the 25m rasterised land parcels dataset for the UKCEH Land Cover Map of 2017 (LCM2017) representing Great Britain. It describes Great Britain's land cover in 2017 using UKCEH Land Cover Classes, which are based on UK Biodiversity Action Plan broad habitats.  This dataset was derived by rasterising the corresponding LCM2017 land parcels dataset into 25m pixels.  It is provided as a 3-band, 8-bit integer raster.  The first band is the UKCEH Land Cover Class identifier.  Bands 2 and 3 are indicators  of classification confidence.  For a fuller description please refer to the product documentation.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.\n\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"499212cd-d64a-43ba-b801-95402e4d4098","incomingCitationCount":2,"givenName":["R.D.","C.G.","A.W.","C.S.","Dan"],"familyName":["Morton","Marston","O'Neil","Rowland"],"fullName":["Morton, R.D.","Marston, C.G.","O'Neil, A.W.","Rowland, C.S.","Morton, D."],"keyword":["Land cover","Mapping","UK-SCAPE"],"keywordsTheme":["Land cover","Mapping"],"keywordsOther":["UK-SCAPE"],"licence":"Non-Open government licence","lineage":"The 25m Rasterised Land Parcels datasets of the LCM2017, LCM2018 and LCM2019 product range were derived by rasterising the corresponding Land Parcels datasets. They give land cover information in 21 classes based on UK Biodiversity Action Plan broad habitats. They are provided as 3-band 8-bit integer 25m pixel rasters. Band-1 is the modal land cover from the Land Parcels dataset, band-2 and band-3 are indicators of classification confidence. The Land Parcels datasets are maintained in a PostGIS database. Gdal tools were used to rasterise the land parcels, giving the 25m Rasterised Landparcels dataset in GeoTiff format. GeoTiff is open standard format for raster data and GeoTiff files can be read by most GIS software.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3591-1034","https://orcid.org/0000-0002-0459-506X"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/499212cd-d64a-43ba-b801-95402e4d4098","10.5285/499212cd-d64a-43ba-b801-95402e4d4098"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Land Cover Map 2017 (25m rasterised land parcels, GB)","topic":["0/Land cover/","0/Mapping/"],"version":1.0,"view":["public","jgar"],"shortenedDescription":"This is the 25m rasterised land parcels dataset for the UKCEH Land Cover Map of 2017 (LCM2017) representing Great Britain. It describes Great Britain's land cover in 2017 using UKCEH Land Cover Classes, which are based on UK Biodiversity Action Plan broad habitats...."},{"publicationDate":"2023-08-23T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Smithsonian Institution, US","Insectarium de Montréal","Aarhus University","Naturalis Biodiversity Center","Canadian National Collection of Insects"],"authorGivenName":["T.","Y.","D.","A.","T.T.","C.","M.","S.","D.B."],"authorFamilyName":["August","Basset","Boislard","Carbone","Gomez-Segura","Høye","Huijbers","Larrivée","Schmidt","Teagle","Roy"],"authorFullName":["August, T.","Basset, Y.","Boislard, T.","Carbone, D.","Gomez-Segura, A.","Høye, T.T.","Huijbers, C.","Larrivée, M.","Schmidt, C.","Teagle, S.","Roy, D.B."],"authorOrcid":["https://orcid.org/0000-0003-1116-3385","https://orcid.org/0000-0002-1942-5717","https://orcid.org/0000-0002-4480-2684","https://orcid.org/0009-0003-5290-786X","https://orcid.org/0000-0002-9575-7262","https://orcid.org/0000-0001-5387-3284","https://orcid.org/0000-0001-5206-3415","https://orcid.org/0000-0002-2925-3736","https://orcid.org/0000-0002-5965-1890","https://orcid.org/0000-0002-8824-8435","https://orcid.org/0000-0002-5147-0331"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Dataset contains images recorded during a trial of Automated Monitoring of Insects (AMI), Automoth and Diopsis camera systems. The images were taken at five sites in Barro Colorado Island, Panama, during night-time hours from the 23rd to the 26th of January 2023. The parties involved in data collection are listed in the author section.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/W004216/1"],"identifier":"b088d4bd-4abb-46d4-bc90-f4e58c65f324","incomingCitationCount":0,"givenName":["T.","Y.","D.","A.","T.T.","C.","M.","S.","D.B.","Dylan"],"familyName":["August","Basset","Boislard","Carbone","Gomez-Segura","Høye","Huijbers","Larrivée","Schmidt","Teagle","Roy"],"fullName":["August, T.","Basset, Y.","Boislard, T.","Carbone, D.","Gomez-Segura, A.","Høye, T.T.","Huijbers, C.","Larrivée, M.","Schmidt, C.","Teagle, S.","Roy, D.B."],"keyword":["Environmental survey","Panama","Barro Colorado Island","Winged insects","AMI"],"keywordsTheme":["Environmental survey"],"keywordsOther":["Panama","Barro Colorado Island","Winged insects","AMI"],"licence":"Non-Open government licence","lineage":"Images were collected by Automated Monitoring of Insects (AMI), Automoth, and Diopsis camera systems. AMI systems captured images at 10 minute intervals and upon the detection of movement. The images were taken at five sites in Barro Colorado Island during night time hours from the 23rd to the 26th of January 2023.  There are no missing data.","locations":["POLYGON((-79.869 9.135, -79.869 9.181, -79.817 9.181, -79.817 9.135, -79.869 9.135))"],"orcid":["https://orcid.org/0000-0003-1116-3385","https://orcid.org/0000-0002-1942-5717","https://orcid.org/0000-0002-4480-2684","https://orcid.org/0009-0003-5290-786X","https://orcid.org/0000-0002-9575-7262","https://orcid.org/0000-0001-5387-3284","https://orcid.org/0000-0001-5206-3415","https://orcid.org/0000-0002-2925-3736","https://orcid.org/0000-0002-5965-1890","https://orcid.org/0000-0002-8824-8435","https://orcid.org/0000-0002-5147-0331"],"organisation":["UK Centre for Ecology & Hydrology","Smithsonian Institution, US","Insectarium de Montréal","Aarhus University","Naturalis Biodiversity Center","Canadian National Collection of Insects","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b088d4bd-4abb-46d4-bc90-f4e58c65f324","10.5285/b088d4bd-4abb-46d4-bc90-f4e58c65f324"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":" Images of nocturnal insects collected in a trial of three automated camera systems on Barro Colorado Island, Panama, January 2023","topic":["0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"Dataset contains images recorded during a trial of Automated Monitoring of Insects (AMI), Automoth and Diopsis camera systems. The images were taken at five sites in Barro Colorado Island, Panama, during night-time hours from the 23rd to the 26th of January 2023. The..."},{"publicationDate":"2021-08-27T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["A.L.","A.C.","H.N.","R.A.","V.A."],"authorFamilyName":["Kay","Rudd","Davies","Lane","Bell"],"authorFullName":["Kay, A.L.","Rudd, A.C.","Davies, H.N.","Lane, R.A.","Bell, V.A."],"authorOrcid":["https://orcid.org/0000-0002-5526-1756","https://orcid.org/0000-0001-5996-6115","https://orcid.org/0000-0001-7783-4853","https://orcid.org/0000-0003-4176-9214","https://orcid.org/0000-0002-0792-5650"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Gridded hydrological model river flow estimates on a 1km grid over Northern Ireland for the period Dec 1980 - Nov 2011. The dataset includes monthly mean river flow, annual maxima of daily mean river flow (water years Oct - Sept) and annual minima of 7-day mean river flow (years spanning Dec-Nov) (units: m3/s). The data are provided in gridded netCDF files. There is one file for each variable.\n\nTo aid interpretation, three additional spatial datasets are provided: a) digitally-derived catchment areas and b) estimated locations of flow gauging stations both on the 1km x 1km grid and c) a 1km x 1km grid identifying majority lake cells.\n\nThe data were produced as part of UK-SCAPE (UK Status, Change And Projections of the Environment, Work Package 2: Case Study - Water) a NERC-funded National Capability Science Single Centre award.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"f5fc1041-e284-4763-b8b7-8643c319b2d0","incomingCitationCount":1,"givenName":["A.L.","A.C.","H.N.","R.A.","V.A.","Alison"],"familyName":["Kay","Rudd","Davies","Lane","Bell"],"fullName":["Kay, A.L.","Rudd, A.C.","Davies, H.N.","Lane, R.A.","Bell, V.A.","Kay, A."],"keyword":["Modelling","Hydrology","Annual minimum","Annual maximum","Grid-to-Grid","G2G","Northern Ireland","River flow","UK-SCAPE","hydrology","modelling"],"keywordsTheme":["Modelling","Hydrology"],"keywordsOther":["Annual minimum","Annual maximum","Grid-to-Grid","G2G","Northern Ireland","River flow","UK-SCAPE","hydrology","modelling"],"licence":"Open government licence","lineage":"This dataset is a model output from the Grid-to-Grid hydrological model (Bell et al. 2009; https://doi.org10.1016/j.jhydrol.2009.08.031) driven by observed data. The meteorological variables used were: \n - daily precipitation (CEH-GEAR; https://doi.org/10.5285/33604ea0-c238-4488-813d-0ad9ab7c51ca)\n - daily min and max temperature (Met Office; https://doi.org/10.5285/2a62652a4fe6412693123dd6328f6dc8) \n - monthly 40km grids of PE for short grass (MORECS; https://doi.org/10.5194/hess-1-227-1997)\n\nSee accompanying documenation for more details.","locations":["POLYGON((-8.394 53.702, -8.394 55.329, -5.35 55.329, -5.35 53.702, -8.394 53.702))"],"orcid":["https://orcid.org/0000-0002-5526-1756","https://orcid.org/0000-0001-5996-6115","https://orcid.org/0000-0001-7783-4853","https://orcid.org/0000-0003-4176-9214","https://orcid.org/0000-0002-0792-5650"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f5fc1041-e284-4763-b8b7-8643c319b2d0","10.5285/f5fc1041-e284-4763-b8b7-8643c319b2d0"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Kay, A.L., Davies, H.N., Lane, R. A., Rudd, A.C., & Bell, V.A. (2021). Grid-based simulation of river flows in Northern Ireland: Model performance and future flow changes. In Journal of Hydrology: Regional Studies (Vol. 38, p. 100967). Elsevier BV."],"supplementalName":["UKSCAPE"],"title":"Grid-to-Grid model estimates of river flow for Northern Ireland driven by observed data (1980 to 2011)","topic":["0/Modelling/","0/Hydrology/"],"version":1.0,"view":["public","crimar"],"shortenedDescription":"Gridded hydrological model river flow estimates on a 1km grid over Northern Ireland for the period Dec 1980 - Nov 2011. The dataset includes monthly mean river flow, annual maxima of daily mean river flow (water years Oct - Sept) and annual minima of 7-day mean river..."},{"publicationDate":"2018-03-12T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","European Centre for Medium Range Weather Forecasts"],"authorGivenName":["K.A.","M.","J.","C."],"authorFamilyName":["Smith","Tanguy","Hannaford","Prudhomme"],"authorFullName":["Smith, K.A.","Tanguy, M.","Hannaford, J.","Prudhomme, C."],"authorOrcid":["https://orcid.org/0000-0003-1060-9103","https://orcid.org/0000-0002-1516-6834","https://orcid.org/0000-0002-5256-3310","https://orcid.org/0000-0003-1722-2497"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/014w0fd65"],"catalogue":"eidc","description":"This dataset is model output from the GR4J lumped catchment hydrology model. It provides 500 model realisations of daily river flow, in cubic metres per second (cumecs, m3/s), for 303 UK catchments for the period between 1891-2015. The modelled catchments are part of the National River Flow Archive (NRFA)  (https://nrfa.ceh.ac.uk/) and provide good spatial coverage across the UK.  These flow reconstructions were produced as part of the Research Councils UK (RCUK) funded Historic Droughts and IMPETUS projects, to provide consistent modelled daily flow data across the UK from 1891-2015, with estimates of uncertainty. This dataset is an outcome of the Historic Droughts Project (grant number: NE/L01016X/1).\nThe data are provided in two formats to help the user account for uncertainty: \n(1) a 500-member ensemble of daily river flow time series for each catchment, with their corresponding model parameters and evaluation metric scores of model performance. \n(2)  a single river flow time series (one corresponding to the top run of the 500), with the maximum and minimum daily limits of the 500 ensemble members.\n\n\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/L01016X/1","NE/L010267/1"],"identifier":"f710bed1-e564-47bf-b82c-4c2a2fe2810e","incomingCitationCount":5,"givenName":["Katie","K.A.","M.","J.","C."],"familyName":["Smith","Tanguy","Hannaford","Prudhomme"],"fullName":["Smith, K.","Smith, K.A.","Tanguy, M.","Hannaford, J.","Prudhomme, C."],"keyword":["United Kingdom","Historic Droughts","Drought inventory","Drought catalogue","Discharge","GR4J","Uncertainty","Reconstructions","drought","water scarcity","catchment","river","flow"],"keywordsPlace":["United Kingdom"],"keywordsProject":["Historic Droughts"],"keywordsOther":["Drought inventory","Drought catalogue","Discharge","GR4J","Uncertainty","Reconstructions","drought","water scarcity","catchment","river","flow"],"licence":"Open government licence","lineage":"The GR4J model (v 1.0.2)  was run over the calibration period (1982-2014) using 500,000 Latin Hypercube Sampled model parameter sets. These model parameters were assessed against observations from the National River Flow Archive (NRFA). For two catchments (the Thames at Kingston, and the Lea at Feildes Weir) the model was also calibrated against naturalised flows. The model was calibrated using a multi-objective approach comprising of 6 evaluation metrics: Nash Sutcliffe Efficiency (NSE), NSE on log flows (log NSE), Mean Absolute Percent Error (MAPE), Absolute Percent Bias (PBIAS), Absolute Percent Error in Mean Annual Minimum flows over a 30 day accumulation period (MAM30), and Absolute Percent Error in the flow exceeded 95% of the time (Q95).\n\nThe 500,000 model runs were then ranked by each evaluation metric, the ranks were summed, and the runs were reordered according to this final rank. Finally, in order to prevent uneven trade-offs between metrics, the runs were re-ordered according to thresholds of acceptability. \nReconstructed flow timeseries were then run for the top 500 ranking model parameter sets, using PET (Potential Evapotranspiration) (Tanguy et al., 2017: doi https://doi.org/10.5285/17b9c4f7-1c30-4b6f-b2fe-f7780159939c), and reconstructed daily rainfall data, provided by the UK Met Office.\nThe modelled data, and the supporting metadata files, were exported from the R software programme as comma separated value files (.csv), and ingested into the EIDC in this format.\n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0003-1060-9103","https://orcid.org/0000-0002-1516-6834","https://orcid.org/0000-0002-5256-3310","https://orcid.org/0000-0003-1722-2497"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","European Centre for Medium Range Weather Forecasts","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f710bed1-e564-47bf-b82c-4c2a2fe2810e","10.5285/f710bed1-e564-47bf-b82c-4c2a2fe2810e"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/014w0fd65","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Website for National River Flow Archive (NRFA)"],"supplementalName":["National River Flow Archive (NRFA)"],"title":"Historic reconstructions of daily river flow for 303 UK catchments (1891-2015)","version":1.0,"view":["public","danor"],"shortenedDescription":"This dataset is model output from the GR4J lumped catchment hydrology model. It provides 500 model realisations of daily river flow, in cubic metres per second (cumecs, m3/s), for 303 UK catchments for the period between 1891-2015. The modelled catchments are part of..."},{"publicationDate":"2025-06-09T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Bangor University","Forest Research Centre, Sabah Forestry Department","Universiti of Malaysia Sabah","Lancaster University"],"authorGivenName":["S.J.B.","D.M.O.","T.","N.","R.","Noreen","Y","Nicholas"],"authorFamilyName":["Robinson","Elias","Goodall","McNamara","Griffiths","Majalap","Sau Wai","Ostle"],"authorFullName":["Robinson, S.J.B.","Elias, D.M.O.","Goodall, T.","McNamara, N.","Griffiths, R.","Majalap, N.","Sau Wai, Y.","Ostle, N."],"authorOrcid":["https://orcid.org/0000-0002-0011-7407","https://orcid.org/0000-0002-2674-9285","https://orcid.org/0000-0002-1526-4071","https://orcid.org/0000-0002-5143-5819","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-3263-3702"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/040v70252","https://ror.org/04f2nsd36"],"catalogue":"eidc","description":"This dataset contains information on soil microbial communities, soil physicochemical properties, forest structural and environmental characteristics across a contiguous area of forest  that has undergone contrasting logging disturbance and restoration in Sabah, northern Malaysian Borneo. Sampling was conducted as part of a study investigating soil microbial community responses to either active restoration (enrichment planting) or passive restoration (natural regeneration) of selectively logged forest, relative to old-growth soil microbial communities.\n\nThis work was supported through the UK Natural Environment Research Council (NERC) Human Modified Tropical Forests Programme (Biodiversity and Land-use Impacts on Tropical Ecosystem Function (BALI) consortium [NE/K016253/1]), ENVISION Doctoral Training Scheme [NE/L002604/1] and NC International Programme [NE/X006247/1].","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/K016253/1","NE/L002604/1","NE/X006247/1"],"identifier":"9feab716-0642-4ab9-a363-d73d135a48b9","incomingCitationCount":0,"givenName":["S.J.B.","D.M.O.","T.","N.","R.","Noreen","Y","Nicholas"],"familyName":["Robinson","Elias","Goodall","McNamara","Griffiths","Majalap","Sau Wai","Ostle"],"fullName":["Robinson, S.J.B.","Elias, D.M.O.","Goodall, T.","McNamara, N.","Griffiths, R.","Majalap, N.","Sau Wai, Y.","Ostle, N."],"keyword":["Sabah","Malaysian Borneo","Biodiversity","Land use","Soil","soil microbes","bacteria","fungi","ectomycorrhizal","forest restoration","forest rehabilitation","soil properties","selective logging"],"keywordsPlace":["Sabah","Malaysian Borneo"],"keywordsTheme":["Biodiversity","Land use","Soil"],"keywordsOther":["soil microbes","bacteria","fungi","ectomycorrhizal","forest restoration","forest rehabilitation","soil properties","selective logging"],"licence":"Open government licence","lineage":"Soil samples and forest structural and environmental data were collected at nine sites during one campaign in  March 2018 . Three sampling sites were chosen in each of three forest types of old-growth, naturally regenerating and actively restored logged forest. Old-growth forest was located in the Danum Valley Conservation Area, and logged forest sites were situated within the adjacent Innoprise Face Foundation Rainforest Rehabilitation Project (INFAPRO) area. A geospatial transect design was employed for soil sampling and measurement of microclimate variables at each site to assess variation in microbial communities over cm to m scales. This comprised three transects radiating out from one centre point positioned at 120 ° to one another. Sampling points were located at the centre point, then at increasing distances of 10 cm, 30 cm, 90 cm, 2.7 m, 8.4 m and 24.3 m along each transect relative to the centre. The circumferences of all tree stems with diameter at breast height (DBH) >5 cm within a 2.5 m buffer of all transects were recorded at each site for site-level calculation of stem density and basal area. Soil physicochemical properties were analysed at the Sabah Forest Research Centre, Sepilok. Organic layer soil microbial community data were generated by 16S and ITS amplicon sequencing at UKCEH Wallingford, and Phospholipid Fatty Acid (PLFA) analysis at Lancaster University in the UK. Fungal functional guild classifications were assigned to fungal sequences using the FUNGuild annotation tool. Alpha diversity indices for microbial groups and relative abundances of fungal guilds were generated after rarefying by minimum read counts for each group . Rates of spatial turnover in soil microbial taxa for different microbial groups were calculated using the distance decay approach via linear modelling.","locations":["POLYGON((117.719 4.935, 117.719 5.091, 117.875 5.091, 117.875 4.935, 117.719 4.935))"],"orcid":["https://orcid.org/0000-0002-0011-7407","https://orcid.org/0000-0002-2674-9285","https://orcid.org/0000-0002-1526-4071","https://orcid.org/0000-0002-5143-5819","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-3263-3702"],"organisation":["UK Centre for Ecology & Hydrology","Bangor University","Forest Research Centre, Sabah Forestry Department","Universiti of Malaysia Sabah","Lancaster University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9feab716-0642-4ab9-a363-d73d135a48b9","10.5285/9feab716-0642-4ab9-a363-d73d135a48b9"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Lancaster University","UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/040v70252","https://ror.org/04f2nsd36","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["The raw sequence data associated with this submission have been deposited in the National Centre for Biotechnology Information Sequence Read Archive (NCBI-SRA) with Project Accession no. PRJNA1218937."],"title":"Soil microbial communities, soil, environmental and forest structural properties across old-growth forest and naturally regenerating or actively restored selectively logged tropical forest in Sabah, Borneo, March 2018","topic":["0/Biodiversity/","0/Land use/","0/Soil/"],"version":1.0,"view":["public","katwri"],"shortenedDescription":"This dataset contains information on soil microbial communities, soil physicochemical properties, forest structural and environmental characteristics across a contiguous area of forest  that has undergone contrasting logging disturbance and restoration in Sabah, northern..."},{"publicationDate":"2018-08-30T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology"],"authorGivenName":["B.A.","R.F."],"authorFamilyName":["Woodcock","Pywell"],"authorFullName":["Woodcock, B.A.","Pywell, R.F."],"authorOrcid":["https://orcid.org/0000-0003-0300-9951","https://orcid.org/0000-0001-6431-9959"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset describes an experimental test of potential over yielding effects on fruit set and average fruit size for tomato plants grown in the presence of three pollinator combinations: (1) the bumblebee Bombus terrestris (2) Lasioglossum spp. and (3) and additive combination of B. terrestris and Lasioglossum spp. \n\nThe experimental design includes no pollinator controls nested within individual tomato plants exposed to the above pollinator species treatment combinations.  This research was undertaken in 2017 and funded though a UKCEH Commercial Innovation Fund (National Capability) project supported by the Natural Environmental Research Council (Project NEC06344).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"94925db4-eeeb-4f3d-ae19-42a3380636e5","incomingCitationCount":0,"givenName":["Ben","B.A.","R.F."],"familyName":["Woodcock","Pywell"],"fullName":["Woodcock, B.","Woodcock, B.A.","Pywell, R.F."],"keyword":["Agriculture","Biodiversity","Environmental risk","Pollinators","bumblebee","Bombus terrestris","bees","Lasioglossum pauxillum","Lasioglossum malachurum"],"keywordsTheme":["Agriculture","Biodiversity","Environmental risk","Pollinators"],"keywordsOther":["bumblebee","Bombus terrestris","bees","Lasioglossum pauxillum","Lasioglossum malachurum"],"licence":"Open government licence","lineage":"Three treatment combinations of bee pollinators foraging on tomatoes were compared: \n  1) B. terrestris alone (a single 30-40 worker colony);\n  2) Lasioglossum spp. alone, predominantly malachurum but with some pauxillum);\n  3) a combination of B. terrestris (a single 30-40 worker colony) and Lasioglossum spp.. \n\nAll experiments were undertaken under field conditions within three, 2 x 3 m net cages designed to hold free flying bees.   B. terrestris colonies were obtained as commercially available stock (Biobest Ltd) but there is no equivalent for Lasioglossum spp..  To address this resident populations of L. malachurum and L. pauxillum were identified. These were found on bare and compacted soil oil of arable field corners.  Over populations of Lasioglossum spp. two net cages were established, with a third in close proximity although not covering populations of the Lasioglossum spp..  Into this latter cage a B. terrestris colony (30-40 workers) was established.  A further B. terrestris colony (30-40 workers) was allowed to forage in one of the cages covering Lasioglossum nests (Treatment 3), while the other was left without such a colony (Treatment 2).   Population density of Lasioglossum in both cages was broadly equivalent, with c. 4.2 (± 0.8) nest borrows m-2.  Treatment combinations were additive in terms of bee density reflecting likely practice under greenhouse growing conditions.  Nets were only positioned over supporting cages on days when the experiment was being undertaken, to prevent starving of wild Lasioglossum populations.  \n\nAs tomato plants produce no nectar it was necessary to cage a small quantity of Asteraceae garden plants to provide a nectar source for the bees. Experimental tomato plants (var. 'Moneymaker') were established under controlled greenhouse conditions where pollinators were excluded and were translocated to the experimental site when they had multiple flowering stems.  Assessments were restricted to the first five mature flowers on each stem; subsequent flowers were removed. On each plant two flowering stems were selected, one was left open to pollination in the cages with treatments 1-3, the other was treated as a control and covered in a small net bag to prevent access by pollinators.   Batches of five plants were placed in each of the three cages for a four-day period, with this repeated four times.  After each period of exposure all plants were returned to greenhouse conditions and left to mature.  When tomatoes had reached the same point of maturation (deep red colour) the number of fruits produced was counted (out of a maximum of five  per stem) and the individual mass of each fruit was determined.","locations":["POLYGON((-1.196 51.632, -1.196 51.634, -1.195 51.634, -1.195 51.632, -1.196 51.632))"],"orcid":["https://orcid.org/0000-0003-0300-9951","https://orcid.org/0000-0001-6431-9959"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/94925db4-eeeb-4f3d-ae19-42a3380636e5","10.5285/94925db4-eeeb-4f3d-ae19-42a3380636e5"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Pollination of tomatoes by the bees Bombus terrestris and Lasioglossum spp.","topic":["0/Agriculture/","0/Biodiversity/","0/Environmental risk/","0/Pollinators/"],"version":1.0,"view":["public","phtr"],"shortenedDescription":"This dataset describes an experimental test of potential over yielding effects on fruit set and average fruit size for tomato plants grown in the presence of three pollinator combinations: (1) the bumblebee Bombus terrestris (2) Lasioglossum spp. and (3) and additive..."},{"publicationDate":"2022-10-13T00:00:00.000+00:00","authorAffiliation":["Environmental Research Institute","National Oceanography Centre","UK Centre for Ecology & Hydrology"],"authorGivenName":["P.","R.","S.","A.","D.","A.E."],"authorFamilyName":["Fernandez-Garcia","Anderson","Felgate","Gaffney","Gilbert","Grant","Mayor","Pickard"],"authorFullName":["Fernandez-Garcia, P.","Anderson, R.","Felgate, S.","Gaffney, P.","Gilbert, P.","Grant, A.","Mayor, D.","Pickard, A.E."],"authorRor":["https://ror.org/02s08xt61","https://ror.org/00874hx02","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"The dataset contains water chemistry data collected from peatland headwaters across the Flow Country following a wildfire in May 2019. Samples were collected on a monthly basis  from 52 sites across the region from September 2019 to October 2020. Sampling sites were selected to represent peatland catchments in the following conditions: burned near natural, burned drained, unburned near natural, unburned drained and unburned forested. Data were obtained via collection of water samples in situ, and concentrations were derived via subsequent sample processing and analysis.  ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/T006528/1"],"identifier":"57748e4f-d0a4-4648-8a61-bd1c2066db1e","incomingCitationCount":1,"givenName":["P.","R.","S.","A.","D.","A.E."],"familyName":["Fernandez-Garcia","Anderson","Felgate","Gaffney","Gilbert","Grant","Mayor","Pickard"],"fullName":["Fernandez-Garcia, P.","Anderson, R.","Felgate, S.","Gaffney, P.","Gilbert, P.","Grant, A.","Mayor, D.","Pickard, A.E."],"keyword":["Peatlands","wildfire","Flow Country","UK","fire","peat","biogeochemistry"],"keywordsOther":["Peatlands","wildfire","Flow Country","UK","fire","peat","biogeochemistry"],"licence":"Open government licence","lineage":"All data were generated by the authors. During the generation of water chemistry data, calibration standards of known concentrations were used for quality control of instrument outputs.","locations":["POLYGON((-4.194 58.325, -4.194 58.607, -3.654 58.607, -3.654 58.325, -4.194 58.325))"],"organisation":["Environmental Research Institute","National Oceanography Centre","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","University of the Highlands and Islands"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/57748e4f-d0a4-4648-8a61-bd1c2066db1e","10.5285/57748e4f-d0a4-4648-8a61-bd1c2066db1e"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","University of the Highlands and Islands","National Oceanography Centre"],"ror":["https://ror.org/02s08xt61","https://ror.org/00874hx02","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Water chemistry measured from peatland sub-catchments in the Flow Country, Scotland following a wildfire 2019-2020","version":1.0,"view":["public","margla"],"shortenedDescription":"The dataset contains water chemistry data collected from peatland headwaters across the Flow Country following a wildfire in May 2019. Samples were collected on a monthly basis  from 52 sites across the region from September 2019 to October 2020. Sampling sites were..."},{"publicationDate":"2022-08-16T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["S.G.","H.","S.M.","D.","P.A."],"authorFamilyName":["Jarvis","Risser","Smart","Monteith","Henrys"],"authorFullName":["Jarvis, S.G.","Risser, H.","Smart, S.M.","Monteith, D.","Henrys, P.A."],"authorOrcid":["https://orcid.org/0000-0001-5382-5135","https://orcid.org/0000-0001-9819-1092","https://orcid.org/0000-0003-2750-7832","https://orcid.org/0000-0003-4758-1482"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This information product contains gridded estimates of Ellenberg vegetation indicator scores for four different indicators: fertility (N); pH/reactivity (R); light availability (L) and moisture (F) at 1km2 resolution. Both cover-weighted (cwt) and non-cover weighted (site) Ellenberg indicators are estimated. Estimates are made for two different time periods, 1990 and 2015-2019 and the change between the two time periods is also presented. \n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"0a9900f2-8556-4487-bc13-9c2fdc05082c","incomingCitationCount":0,"givenName":["S.G.","H.","S.M.","D.","P.A.","Susan"],"familyName":["Jarvis","Risser","Smart","Monteith","Henrys"],"fullName":["Jarvis, S.G.","Risser, H.","Smart, S.M.","Monteith, D.","Henrys, P.A.","Jarvis, S."],"keyword":["Modelling","Ellenberg","Vegetation","Quadrats","Intergrated modelling","Long term monitoring","UKSCAPE"],"keywordsTheme":["Modelling"],"keywordsOther":["Ellenberg","Vegetation","Quadrats","Intergrated modelling","Long term monitoring","UKSCAPE"],"licence":"Open government licence","lineage":"Estimates were derived using three different vegetation monitoring datasets: Countryside Survey (CS); National Plant Monitoring Scheme (NPMS) and Natural England’s Long Term Monitoring Network (LTMN). All three datasets contributed to the 2015-2019 estimates but only CS was available historically to create 1990 estimates. Predictions from generalised additive mixed models including climate and deposition variables were used to create gridded estimates at 1km2 resolution. Change was calculated as the difference between the two time periods. Uncertainty estimates are provided for alongside all estimates.\n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0001-5382-5135","https://orcid.org/0000-0001-9819-1092","https://orcid.org/0000-0003-2750-7832","https://orcid.org/0000-0003-4758-1482"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0a9900f2-8556-4487-bc13-9c2fdc05082c","10.5285/0a9900f2-8556-4487-bc13-9c2fdc05082c"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Gridded estimates of Ellenberg N, R, F, and L indicators for Great Britain, 1990 and 2015-2019","topic":["0/Modelling/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This information product contains gridded estimates of Ellenberg vegetation indicator scores for four different indicators: fertility (N); pH/reactivity (R); light availability (L) and moisture (F) at 1km2 resolution. Both cover-weighted (cwt) and non-cover weighted..."},{"publicationDate":"2019-09-13T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology"],"authorGivenName":["R.","E.","C. ","H.","J.","M.","N.P."],"authorFamilyName":["Morrison","Clark","Lloyd","Ward","Evans","Brooks","Rowe","McNamara"],"authorFullName":["Morrison, R.","Clark, E.","Lloyd, C.","Ward, H.","Evans, J.","Brooks, M.","Rowe, R.","McNamara, N.P."],"authorOrcid":["https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0002-7439-0393","https://orcid.org/0000-0002-7554-821X","https://orcid.org/0000-0002-5143-5819"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains time series observations of surface-atmosphere exchanges of net ecosystem carbon dioxide exchange (NEE), sensible heat (H) and latent heat (LE), and momentum (τ) measured at a short rotation coppice willow plantation in Lincolnshire, UK. Turbulent flux densities were monitored using the micrometeorological eddy covariance (EC) technique between 13th October 2009 and 15th May 2013. The dataset includes ancillary weather and soil physics observations, as well as variables describing atmospheric turbulence and the quality of the turbulent flux observations.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"9e14539e-b376-4a70-87a0-f8725f84bae9","incomingCitationCount":0,"givenName":["Ross","R.","E.","C. ","H.","J.","M.","N.P."],"familyName":["Morrison","Clark","Lloyd","Ward","Evans","Brooks","Rowe","McNamara"],"fullName":["Morrison, R.","Clark, E.","Lloyd, C.","Ward, H.","Evans, J.","Brooks, M.","Rowe, R.","McNamara, N.P."],"keyword":["Lincolnshire","Soil","Land use","Salix viminalis"],"keywordsPlace":["Lincolnshire"],"keywordsTheme":["Soil","Land use"],"keywordsOther":["Salix viminalis"],"licence":"Open government licence","lineage":"Eddy covariance (EC) and micrometeorological observations were made above the willow canopy using an open-path eddy covariance system. Ancillary meteorological and soil physics observations were made from a scaffold tower at the northern end of the plantation.\n\nTurbulent flux densities were calculated from the raw EC data using the EddyPRO® Flux Calculation Software Version 6.1. \n\nQuality Control of EC data involved removal of statistical outliers and tests that theoretical requirements for the successful application of the EC technique were not violated significantly. Data gaps in EC data (NEE, LE, H) and the partitioning of NEE into gross ecosystem production and total ecosystem production were performed using the REddyProc Package for R (Reichstein et al., 2019). \n\nFurther details are available in the supporting documentation.","locations":["POLYGON((-0.35 53.15, -0.35 53.2, -0.4 53.2, -0.4 53.15, -0.35 53.15))"],"orcid":["https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0002-7439-0393","https://orcid.org/0000-0002-7554-821X","https://orcid.org/0000-0002-5143-5819"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9e14539e-b376-4a70-87a0-f8725f84bae9","10.5285/9e14539e-b376-4a70-87a0-f8725f84bae9"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["REddyProc: Post Processing of (Half-)Hourly Eddy-Covariance Measurements. R package version 1.2. "],"supplementalName":["Thomas Wutzler, Markus Reichstein, Antje Maria Moffat and Mirco Migliavacca (2019)"],"title":"Eddy covariance measurements of carbon dioxide, energy and water fluxes at a commercial short rotation coppice willow plantation, Lincolnshire, UK, 2009 to 2013","topic":["0/Soil/","0/Land use/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains time series observations of surface-atmosphere exchanges of net ecosystem carbon dioxide exchange (NEE), sensible heat (H) and latent heat (LE), and momentum (τ) measured at a short rotation coppice willow plantation in Lincolnshire, UK. Turbulent..."},{"publicationDate":"2021-02-26T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Chernobyl Centre for Nuclear Safety","University of Salford"],"authorGivenName":["C.L.","S.","A. ","J.S.","M.D. ","N.A."],"authorFamilyName":["Barnett","Gashchak","Maksimenko","Chaplow","Wood","Beresford"],"authorFullName":["Barnett, C.L.","Gashchak, S.","Maksimenko, A.","Chaplow, J.S.","Wood, M.D.","Beresford, N.A."],"authorOrcid":["https://orcid.org/0000-0001-9723-7247","https://orcid.org/0000-0002-8058-8697","https://orcid.org/0000-0002-0635-2387","https://orcid.org/0000-0002-8722-0238"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/052dx1v90","https://ror.org/01tmqtf75"],"catalogue":"eidc","description":"Data comprise plot details and radionuclide activity concentrations for Sr-90, Cs-137, Am-241, Pu-238, Pu-239 and Pu-240 in ‘grassy’ vegetation and soil. These radionuclide activity concentrations have been used to make estimations of total weighted absorbed doses to grassy vegetation, deciduous trees and bacteria; no dose rate estimates for grassy vegetation have been made for those sites where grassy vegetation was absent.\n\nRadiation from the 1986 Chernobyl nuclear power plant accident killed coniferous trees in a 4-6 km2 area of forest to the west of the power plant. This area is now known as the 'Red Forest’ and it has subsequently regenerated with understorey vegetation and deciduous trees; it is the most anthropogenically contaminated radioactive ecosystem on Earth. In July 2016 a severe fire burnt (to varying degrees) c. 80 percent of the Red Forest; this presented a unique opportunity to study the impact of radiation on the recovery of forest ecosystems exposed to a secondary stressor (fire). To investigate this, in September 2017 the RED FIRE project set up sixty study plots in the Red Forest (in burnt and unburnt areas) with a further nine plots established close to Buriakivka village (approximately 8 km from the Red Forest).\n\nVegetation samples from each plot were harvested using shears in September 2017. Each sample was sorted into ‘grassy’ and ‘other’ vegetation; these were air-dried (20-25 degrees Celsius) and the grassy vegetation samples homogenised prior to radionuclide analyses.\n\nSoil core samples collected in September 2017 were bulked, homogenised and sub-samples taken for determination of pH and percentage moisture determined by oven drying (approximately 60 degrees Celsius) to a constant mass. The remaining soil sample was used for the determination of radionuclide activity concentrations; prior to analyses, these samples were dried at approximately 80 degrees Celsius.\n\nThis work was funded by the NERC, Grant Ref: NE/P015212/1 (RED FIRE: Radioactive Environment Damaged by fire: a Forest In Recovery)","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/P015212/1"],"identifier":"60782622-7bfa-4615-a9e3-0a802a9f4674","incomingCitationCount":0,"givenName":["C.L.","S.","A. ","J.S.","M.D. ","N.A."],"familyName":["Barnett","Gashchak","Maksimenko","Chaplow","Wood","Beresford"],"fullName":["Barnett, C.L.","Gashchak, S.","Maksimenko, A.","Chaplow, J.S.","Wood, M.D.","Beresford, N.A."],"keyword":["high-purity germanium γ-detector ","β-spectrometer ","MKS-01R meter","Chernobyl","Red Forest","Chornobyl","Radioecology","Plot experiment","radionuclide activity","Environmental Risk from Ionising Contaminants: Assessment and Management (ERICA)","RED FIRE","bacterium","grass","deciduous tree","radionuclide"],"keywordsInstrument":["high-purity germanium γ-detector ","β-spectrometer ","MKS-01R meter"],"keywordsPlace":["Chernobyl","Red Forest","Chornobyl"],"keywordsTheme":["Radioecology"],"keywordsOther":["Plot experiment","radionuclide activity","Environmental Risk from Ionising Contaminants: Assessment and Management (ERICA)","RED FIRE","bacterium","grass","deciduous tree","radionuclide"],"licence":"Open government licence","lineage":"Cs-137 activity concentrations were determined in grassy vegetation and soil using a high-purity germanium γ-detector (Model GC3019, Canberra-Packard, Connecticut, USA). A standard 137Cs/152Eu source (OISN-1; Applied Ecology Laboratory of Environmental Safety Centre, Odessa, Ukraine) was used for calibration. The minimal detectable activity was approximately 0.18 Bq per sample with uncertainties of approximately 10-15 percent (p=0.95) depending on the sample type. \n\nSr-90 activity concentrations were determined in soil and grassy vegetation samples using a β-spectrometer (EXPRESS-01) with a thin-filmed (0.1 mm) plastic scintillator detector. No radiochemical pre-treatment was required and samples were analysed as a solid matrix. Daily calibrations were conducted. Spectra were processed by correlating the sample spectra with those obtained from standard sources and those obtained from background measurements; uncertainties were approximately 20 percent (p=0.95).\nPrior to processing to determine activity concentrations of 241Am and Pu isotopes in soil samples, 242Pu and 243Am were added as yield tracers. Samples were dissolved in HF followed by treatment with HNO3, HCl, H3BO3+HNO3 and 8M HNO3. Plutonium and Am were separated using anion exchange resin (Bio Rad AG 1 × 8, 100-200 mesh). The Pu fraction was evaporated. Americium was precipitated with calcium oxalate and then separated using TRU resin columns; lanthanides were removed using an anion exchange resin column. Thin alpha sources of each separated actinide element were prepared by micro co-precipitation with neodymium fluoride and analysed using a Canberra Alpha Analyst alpha spectrometer. Counting errors were typically <20 percent.\n\nTo estimate the activity concentrations of Am-241 and Pu-isotopes for grassy vegetation transfer parameters (CRwo-soil) for Agrostis gigantea from a site within the Red Forest were used (Beresford et al. 2020; Table 4) together with the appropriate measured soil activity concentration (DM). To estimate Sr-90 and Cs-137 activity concentrations in deciduous trees CRwo-soil values from sites within the CEZ were used (Holiaka et al. 2020) together with the measured soil activity concentrations (dry mass); for Am-241 and Pu-isotopes CRwo-soil values for Pinus sylvestris (wood) from a site within the Red Forest were used (Beresford et al. 2020; Table 4).\n\nWeighted absorbed dose rate estimations for grassy vegetation and deciduous tree wood were made using the ERICA Tool http://www.erica-tool.com/ (version 1.3) and the revised ‘R&D128’ spreadsheet model (https://wiki.ceh.ac.uk/display/rpemain/Ar+-+Kr+-+Xe+dose+calculator) was used to estimate the weighted absorbed dose to bacteria. The ambient dose rate (µSv h-1) on the soil surface was measured at each study plot using a MKS-01R meter.","locations":["POLYGON((30.001 51.342, 30.001 51.415, 30.091 51.415, 30.091 51.342, 30.001 51.342))"],"orcid":["https://orcid.org/0000-0001-9723-7247","https://orcid.org/0000-0002-8058-8697","https://orcid.org/0000-0002-0635-2387","https://orcid.org/0000-0002-8722-0238"],"organisation":["UK Centre for Ecology & Hydrology","Chernobyl Centre for Nuclear Safety","University of Salford","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/60782622-7bfa-4615-a9e3-0a802a9f4674","10.5285/60782622-7bfa-4615-a9e3-0a802a9f4674"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/052dx1v90","https://ror.org/01tmqtf75","https://ror.org/04xw4m193"],"state":"published","supplementalName":["TREE website","REDFIRE website","CHAR webpage"],"title":"Soil and vegetation radionuclide activity concentrations and calculated dose rates from the Red Forest, Chernobyl, Ukraine, 2016-2017","topic":["0/Radioecology/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"Data comprise plot details and radionuclide activity concentrations for Sr-90, Cs-137, Am-241, Pu-238, Pu-239 and Pu-240 in ‘grassy’ vegetation and soil. These radionuclide activity concentrations have been used to make estimations of total weighted absorbed doses to..."},{"publicationDate":"2022-03-31T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["P.J.","A.","I.D.M.","J.P.","L."],"authorFamilyName":["Taylor","Dobel","Grant","Gunn","Olszewska","May"],"authorFullName":["Taylor, P.J.","Dobel, A.","Grant, A.","Gunn, I.D.M.","Olszewska, J.P.","May, L."],"authorOrcid":["https://orcid.org/0000-0003-1663-9426","https://orcid.org/0000-0002-1473-5097","https://orcid.org/0000-0003-3385-9973"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains weather conditions, water quality, water chemistry and crustacean zooplankton counts sampled at Loch Leven throughout the year 2020. Loch Leven is a lowland lake in Scotland, United Kingdom. The data were collected as part of a long-term monitoring programme, which began in 1968 and is still underway. Sampling occurs roughly every 2 weeks with laboratory analysis and data processing being performed at the UK Centre for Ecology & Hydrology Edinburgh site. The sampling and processing was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"2ce166c7-bff2-419b-a17f-0a5d53896416","incomingCitationCount":0,"givenName":["P","P.J.","A.","I.D.M.","J.P.","L."],"familyName":["Taylor","Dobel","Grant","Gunn","Olszewska","May"],"fullName":["Taylor, P.","Taylor, P.J.","Dobel, A.","Grant, A.","Gunn, I.D.M.","Olszewska, J.P.","May, L."],"keyword":["Crustacean zooplankton","Lakes","Loch Leven","Scotland","Taxa","UK","UK-SCAPE","Water chemistry","Water quality"],"keywordsOther":["Crustacean zooplankton","Lakes","Loch Leven","Scotland","Taxa","UK","UK-SCAPE","Water chemistry","Water quality"],"licence":"Open government licence","lineage":"The data was collected from fieldwork at Loch Leven during 2020 and recorded into a database with some samples being processed in the laboratory first. All data has been through a QA process, which is detailed in the metadata document.","locations":["POLYGON((-3.424 56.171, -3.424 56.224, -3.319 56.224, -3.319 56.171, -3.424 56.171))"],"orcid":["https://orcid.org/0000-0003-1663-9426","https://orcid.org/0000-0002-1473-5097","https://orcid.org/0000-0003-3385-9973"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/2ce166c7-bff2-419b-a17f-0a5d53896416","10.5285/2ce166c7-bff2-419b-a17f-0a5d53896416"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Loch Leven monitoring data (water quality, chemistry, crustacean zooplankton), 2020","version":1.0,"view":["public","shar1"],"shortenedDescription":"This dataset contains weather conditions, water quality, water chemistry and crustacean zooplankton counts sampled at Loch Leven throughout the year 2020. Loch Leven is a lowland lake in Scotland, United Kingdom. The data were collected as part of a long-term monitoring..."},{"publicationDate":"2020-06-19T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["R.D.","C.G.","A.W.","C.S."],"authorFamilyName":["Morton","Marston","O'Neil","Rowland"],"authorFullName":["Morton, R.D.","Marston, C.G.","O'Neil, A.W.","Rowland, C.S."],"authorOrcid":["https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3591-1034","https://orcid.org/0000-0002-0459-506X"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This is the 20m classified pixels dataset for the UKCEH Land Cover Map of 2019(LCM2019) representing Northern Ireland. It describes Northern Ireland's land cover in 2019 using UKCEH Land Cover Classes, which are based on UK Biodiversity Action Plan broad habitats. This dataset is the Random Forest classification result from classifying a 20m pixel raster containing multi-season spectral information combined with context layers, which help to resolve spectral confusion.  It is provided as a 2-band, 8-bit integer raster.  The band-1 is the UKCEH Land Cover Class identifier, band-2 is an indicator of classification confidence.  For a fuller description please refer to the product documentation.  LCM2019 represents a suite of geospatial land cover datasets (raster and polygon) describing the UK land surface in 2019.  These were produced at the UK Centre for Ecology & Hydrology by classifying satellite images from 2019. LCM2019 was simultaneously released with LCM2017 and LCM2018.  These are the latest in a series of UKCEH land cover maps, which began with the 1990 Land Cover Map of Northern Ireland (now usually referred to as LCM1990) followed by UK-wide land cover maps LCM2000, LCM2007 and LCM2015.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"5517d5d1-1e8c-4e19-b2f1-06f43bc74f1c","incomingCitationCount":1,"givenName":["R.D.","C.G.","A.W.","C.S.","Clare"],"familyName":["Morton","Marston","O'Neil","Rowland"],"fullName":["Morton, R.D.","Marston, C.G.","O'Neil, A.W.","Rowland, C.S.","Rowland, C."],"keyword":["UK-SCAPE","Land cover","Mapping","land cover","mapping"],"keywordsProject":["UK-SCAPE"],"keywordsTheme":["Land cover","Mapping"],"keywordsOther":["land cover","mapping"],"licence":"Non-Open government licence","lineage":"The 20m Classified Pixels datasets are the most spatially detailed in LCM2017, LCM2018 and LCM2019 product range. All other datasets were derived from these. They give land cover information in 21 classes based on UK Biodiversity Action Plan broad habitats. They result from automatic Random Forest classifications of partially overlapping, rectangular classification scenes and are given as 8-bit, 2-band integer 20m pixel rasters. Band-1 is the most likely land cover class, band-2 is the classification probability associated with this class, rescaled over the interval 0 to 100. Classification scenes comprised per-season Sentinel-2 median top of atmosphere reflectance values resampled to 20m pixel resolution, derived using the Google Earth Engine, combined with regional context layers (for example: terrain, coastal proximity). Overlapping classification results were visually ranked to determine precedence. The best classifications were compiled to form seamless national products for Great Britain and Northern Ireland. Classification used bespoke software integrated with a PostGis spatial database. The 20m rasters were exported from PostGIS using open source gdal tools to give the final product in GeoTiff format. GeoTiff is open standard format for raster data and GeoTiff files can be read by most GIS software.","locations":["POLYGON((-8.178 54.022, -8.178 55.313, -5.432 55.313, -5.432 54.022, -8.178 54.022))"],"orcid":["https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3591-1034","https://orcid.org/0000-0002-0459-506X"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/5517d5d1-1e8c-4e19-b2f1-06f43bc74f1c","10.5285/5517d5d1-1e8c-4e19-b2f1-06f43bc74f1c"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Land Cover Map 2019 (20m classified pixels, N. Ireland)","topic":["0/Land cover/","0/Mapping/"],"version":1.0,"view":["public","rbrou"],"shortenedDescription":"This is the 20m classified pixels dataset for the UKCEH Land Cover Map of 2019(LCM2019) representing Northern Ireland. It describes Northern Ireland's land cover in 2019 using UKCEH Land Cover Classes, which are based on UK Biodiversity Action Plan broad habitats. This..."},{"publicationDate":"2020-10-09T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["C.S.","C.G.","R.D.","A.W."],"authorFamilyName":["Rowland","Marston","Morton","O'Neil"],"authorFullName":["Rowland, C.S.","Marston, C.G.","Morton, R.D.","O'Neil, A.W."],"authorOrcid":["https://orcid.org/0000-0002-0459-506X","https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0003-3591-1034"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset consists of the 1km raster, percentage target class version of the Land Cover Map 1990 (LCM1990) for Great Britain. The 1km percentage product provides the percentage cover for each of 21 land cover classes for 1km x 1km pixels. This product contains one band per target habitat class (producing a 21 band image). The 21 target classes are based on the Joint Nature Conservation Committee (JNCC) Broad Habitats, which encompass the entire range of UK habitats. This dataset is derived from the vector version of the Land Cover Map, which contains individual parcels of land cover and is the highest available spatial resolution. \n\nLCM1990 is a land cover map of the UK which was produced at the UK Centre for Ecology & Hydrology by classifying satellite images (mainly from 1989 and 1990) into 21 Broad Habitat-based classes. It is the first in a series of land cover maps for the UK, which also includes maps for 2000, 2007, 2015, 2017, 2018 and 2019.  \n\nLCM1990 consists of a range of raster and vector products and users should familiarise themselves with the full range (see related records, the UKCEH web site and the LCM1990 Dataset documentation) to select the product most suited to their needs.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"bb381b5b-d44e-4dbd-a9d1-efffd4c3e4a8","incomingCitationCount":0,"givenName":["C.S.","C.G.","R.D.","A.W."],"familyName":["Rowland","Marston","Morton","O'Neil"],"fullName":["Rowland, C.S.","Marston, C.G.","Morton, R.D.","O'Neil, A.W."],"keyword":["Land cover","Land use","Mapping","UK-SCAPE"],"keywordsTheme":["Land cover","Land use","Mapping"],"keywordsOther":["UK-SCAPE"],"licence":"Non-Open government licence","lineage":"The percentage target class is produced from the 25m raster (which is derived from the vector product) by:\n1. Using gdal_calc to split the 21 target classes into 21 individual images for each class where the presence of the class in question is recorded as 100 and absence is assigned 0.\n2. Gdal_warp is then applied to each of the 21 presence/absence images to resample to 1km, using the 'average' option under resample. This produces images of percentage cover for each class.\n3. Gdal_merge is then used to create a single file with 21 bands, where each band provides the percentage cover for the class i.e. band 1 provides percentage cover for class 1 etc.\n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-0459-506X","https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0003-3947-6463","https://orcid.org/0000-0003-3591-1034"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/bb381b5b-d44e-4dbd-a9d1-efffd4c3e4a8","10.5285/bb381b5b-d44e-4dbd-a9d1-efffd4c3e4a8"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Land Cover Map 1990 (1km percentage target class, GB) v2","topic":["0/Land cover/","0/Land use/","0/Mapping/"],"version":2.0,"view":["public","clamw"],"shortenedDescription":"This dataset consists of the 1km raster, percentage target class version of the Land Cover Map 1990 (LCM1990) for Great Britain. The 1km percentage product provides the percentage cover for each of 21 land cover classes for 1km x 1km pixels. This product contains one..."},{"publicationDate":"2020-03-27T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University"],"authorGivenName":["S.","W.","A."],"authorFamilyName":["Cavers","Wachowiak","Perry"],"authorFullName":["Cavers, S.","Wachowiak, W.","Perry, A."],"authorOrcid":["https://orcid.org/0000-0003-2139-9236","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0002-7889-7597"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/04g6bbq64"],"catalogue":"eidc","description":"The dataset contains  genotypes for samples used to validate a 50K single nucleotide polymorphism (SNP, DNA mutation) Axiom array for Scots pine (Pinus sylvestris) and closely related members of the Pinus mugo complex.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"7ee55609-d6b1-4693-8b36-2bf84fef76c2","incomingCitationCount":1,"givenName":["S.","W.","A.","Stephen"],"familyName":["Cavers","Wachowiak","Perry"],"fullName":["Cavers, S.","Wachowiak, W.","Perry, A."],"keyword":["Biodiversity","Environmental survey","Natural selection ","Speciation ","Divergence ","Polymorphism ","Genotyping ","SNPs","Population genomics ","Genomic ","Micoarray "],"keywordsTheme":["Biodiversity","Environmental survey"],"keywordsOther":["Natural selection ","Speciation ","Divergence ","Polymorphism ","Genotyping ","SNPs","Population genomics ","Genomic ","Micoarray "],"licence":"Open government licence","lineage":"Samples &  Validation of the array was carried out using a subset of 87 samples, which included four species of pine (Pinus sylvestris: SY; P. mugo: MU; P. uncinata: UN; P. uliginosa: UL). DNA was extracted from needles using a Qiagen DNeasy 96 kit following the manufacturer’s instructions. Needles were dried on silica gel prior to extraction and DNA was quantified using a Qubit spectrophotometer to ensure a minimum standardized concentration of 35ng/µl. The quality of genomic DNA was also checked visually for fragmentation on 1%  agarose gel.\n\n Genotyping was done at Edinburgh Genomics following DNA amplification, fragmentation, chip hybridisation, single-base extension through DNA ligation and signal amplification performed according to the Affymetrix Axiom® Assay protocol. Genotyping was performed in 384-well format on a GeneTitan according to the manufacturer’s procedure. Genotype calls were performed using Axiom Analysis Suite software as recommended by the manufacturer (ThermoFisher). Samples were assigned to an analysis group based on their call rate (CR) and dish QC (DQC: a metric provided by ThermoFisher which is generated by measuring signals at multiple sites in the genome known not to vary among individuals), using the following thresholds: DQC 'high' ≥ 0.82; DQC 'low' < 0.82; CR 'high' ≥ 96; CR 'low' < 96. Analyses: 1) DQC high + CR high; 2) DQC high + CR low; 3) DQC low + CR low. High quality samples (N=529), with high CR and DQC, were used to set thresholds for allele calls. Posteriors for allele calls were subsequently used as priors for analyses 2 (N = 753) and 3 (N = 251).","locations":["POLYGON((-18.359 37.192, -18.359 67.115, 24.839 67.115, 24.839 37.192, -18.359 37.192))"],"orcid":["https://orcid.org/0000-0003-2139-9236","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0002-7889-7597"],"organisation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7ee55609-d6b1-4693-8b36-2bf84fef76c2","10.5285/7ee55609-d6b1-4693-8b36-2bf84fef76c2"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04g6bbq64","https://ror.org/04xw4m193"],"state":"published","title":"Scots pine single nucleotide polymorphism (SNP) genotypes for Axiom array validation","topic":["0/Biodiversity/","0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"The dataset contains  genotypes for samples used to validate a 50K single nucleotide polymorphism (SNP, DNA mutation) Axiom array for Scots pine (Pinus sylvestris) and closely related members of the Pinus mugo complex."}],"facets":[{"fieldName":"topic","displayName":"Topic","hierarchical":true,"admin":false,"results":[{"name":"Agriculture","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CMedical+Research+Council&facet=recordType%7CDataset&facet=rightsHolder%7CUK+Centre+for+Ecology+%26+Hydrology&facet=funder%7CNatural+Environment+Research+Council&facet=resourceStatus%7CAvailable&facet=topic%7C0%2FAgriculture%2F","active":false,"count":69},{"name":"Animal 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