{"numFound":1075,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CPeople%27s+Trust+for+Endangered+Species&facet=recordType%7CDataset&facet=funder%7CNatural+Environment+Research+Council&facet=funder%7CFrankfurt+Zoological+Society&facet=resourceStatus%7CAvailable","nextPage":"http://catalogue.ceh.ac.uk/eidc/documents?page=2&facet=funder%7CPeople%27s+Trust+for+Endangered+Species&facet=recordType%7CDataset&facet=funder%7CNatural+Environment+Research+Council&facet=funder%7CFrankfurt+Zoological+Society&facet=resourceStatus%7CAvailable","results":[{"publicationDate":"2020-07-17T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Butterfly Conservation","British Trust for Ornithology"],"authorGivenName":["M.","T.","S.","C.","I.","Z.","D.B."],"authorFamilyName":["Botham","Brereton","Harris","Harrower","Middlebrook","Randle","Roy"],"authorFullName":["Botham, M.","Brereton, T.","Harris, S.","Harrower, C.","Middlebrook, I.","Randle, Z.","Roy, D.B."],"authorOrcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0002-5147-0331"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset provides linear trends, over varying time periods, for the Collated Indices of individual butterfly species across the UK. The main statistical values derived from a linear regression (slope, standard error, P-value) are presented for the entire time series for each species (1976# to the present year), for the last 20 years, and for the last decade.   In addition, trends are classified based on the direction and significance of a linear slope together with an estimated percentage change for that time period. These trend data are provided for all UK butterfly species for which we have sufficient data (58 species).\n\nTrends are calculated by performing a linear regression on the annual Collated indices for each species. Collated indices are calculated using a log-linear model incorporating individual site indices from all monitored sites across the UK for a given species in a given year. \n\nTrends across different time series allow us to determine the long and short-term status of individual species. This is enables us to focus conservation and research and also to assess species responses to conservation already in place.\n\nThe UK Butterfly Monitoring Scheme is organized and funded by Butterfly Conservation (BC), the Centre for Ecology & Hydrology (CEH), the British Trust for Ornithology (BTO), and the Joint Nature Conservation Committee (JNCC). The UKBMS is indebted to all volunteers who contribute data to the scheme.\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.\n\n#Because the Collated indices are only calculated for each species in years in which it was recorded on five or more sites, the starting year for the series is later than 1976 for a number of rarer species.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"8ccccf05-45b4-4a65-b145-38e9b44d2ce4","incomingCitationCount":0,"givenName":["M.","T.","S.","C.","I.","Z.","D.B.","Tom"],"familyName":["Botham","Brereton","Harris","Harrower","Middlebrook","Randle","Roy"],"fullName":["Botham, M.","Brereton, T.","Harris, S.","Harrower, C.","Middlebrook, I.","Randle, Z.","Roy, D.B."],"keyword":["England","Scotland","Wales","Northern Ireland","United Kingdom","UK-SCAPE","Biodiversity","lepidopteran","butterfly"],"keywordsPlace":["England","Scotland","Wales","Northern Ireland","United Kingdom"],"keywordsProject":["UK-SCAPE"],"keywordsTheme":["Biodiversity"],"keywordsOther":["lepidopteran","butterfly"],"licence":"Non-Open government licence","lineage":"Trends are calculated by performing a linear regression on the annual Collated Indices for each species. Indices are calculated for all species (across WCBS squares and traditional UKBMS sites) using the Generalised Abundance Index (GAI) method developed in 2016 with an additional modification that the data from each site in each year is weighted in the final stage relative to the proportion of the species flight period surveyed that year for that site. They give a statistical measure of how the abundance of each species has changed on monitored sites since 1976, over the last 20 years, and over the last decade. Because the Collated indices are only calculated for each species in years in which there was sufficient data available, the starting year for the series is later than 1976 for a number of rarer species.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0002-5147-0331"],"organisation":["UK Centre for Ecology & Hydrology","Butterfly Conservation","British Trust for Ornithology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8ccccf05-45b4-4a65-b145-38e9b44d2ce4","10.5285/8ccccf05-45b4-4a65-b145-38e9b44d2ce4"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","supplementalName":["UKBMS website"],"title":"United Kingdom Butterfly Monitoring Scheme: species trends 2019","topic":["0/Biodiversity/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset provides linear trends, over varying time periods, for the Collated Indices of individual butterfly species across the UK. The main statistical values derived from a linear regression (slope, standard error, P-value) are presented for the entire time series..."},{"publicationDate":"2015-12-11T00:00:00.000+00:00","authorAffiliation":["University of St Andrews"],"authorGivenName":["J.","D.M."],"authorFamilyName":["Maunder","Paterson"],"authorFullName":["Maunder, J.","Paterson, D.M."],"authorRor":["https://ror.org/02wn5qz54"],"catalogue":"eidc","description":"The dataset details surface sediment water content across six intertidal sites in the winter and summer of 2013. Three of the sites were in Morecambe Bay, North West England and three of the sites were in Essex, South East England. Each of these sites consisted of a saltmarsh area and adjacent mudflat area, with twenty two sampling quadrats placed on each area. Five replicate sediment samples were taken at each quadrat and then freeze dried to give average percentage water content. \n\nThis data was collected as part of Coastal Biodiversity and Ecosystem Service Sustainability (CBESS): NE/J015644/1. The project was funded with support from the Biodiversity and Ecosystem Service Sustainability (BESS) programme. BESS is a six-year programme (2011-2017) funded by the UK Natural Environment Research Council (NERC) and the Biotechnology and Biological Sciences Research Council (BBSRC) as part of the UK's Living with Environmental Change (LWEC) programme.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J015644/1"],"identifier":"5ffbc89e-ebed-4fdc-9563-bad42f50e8ce","incomingCitationCount":0,"givenName":["J.","D.M."],"familyName":["Maunder","Paterson"],"fullName":["Maunder, J.","Paterson, D.M."],"keyword":["Essex","Morecambe Bay","CBESS","BESS","saltmarsh","mudflat","sediment water content","surface sediment","contact core"],"keywordsPlace":["Essex","Morecambe Bay"],"keywordsProject":["CBESS","BESS"],"keywordsOther":["saltmarsh","mudflat","sediment water content","surface sediment","contact core"],"licence":"Open government licence","lineage":"Sediment water content was determined through the collection of contact cores. Contact cores use liquid nitrogen to freeze the top 2mm of the sediment surface, excess unfrozen sediment is removed and the sample core is stored below -80 degree centigrade. The sample is weighed to determine wet weight and freeze dried to remove all water. The sample is re-weighed to give dry weight; the difference between the wet and dry weights gives the water content as a percentage. The location of the sample sites was determined by randomly allocated quadrats. Twenty two 1 x 1 m quadrats were randomly allocated to each mudflat and saltmarsh site using R (R Development Core Team, 2014) to specify four different spatial scales (A = 1 quadrat only, B = 3 quadrats at 1 m to 10 m apart, C = 6 quadrats at 10 m to 100 m apart, D = 12 quadrats at 100 m to 1000 m or site maximum).","locations":["POLYGON((-3 51.5, -3 54.25, 1 54.25, 1 51.5, -3 51.5))"],"organisation":["University of St Andrews","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/5ffbc89e-ebed-4fdc-9563-bad42f50e8ce","10.5285/5ffbc89e-ebed-4fdc-9563-bad42f50e8ce"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of St Andrews"],"ror":["https://ror.org/02wn5qz54","https://ror.org/04xw4m193"],"state":"published","title":"Coastal Biodiversity and Ecosystem Service Sustainability (CBESS) surface sediment water content in saltmarsh and mudflat habitats","version":1.0,"view":["public","hajd"],"shortenedDescription":"The dataset details surface sediment water content across six intertidal sites in the winter and summer of 2013. Three of the sites were in Morecambe Bay, North West England and three of the sites were in Essex, South East England. Each of these sites consisted of a..."},{"publicationDate":"2023-07-11T00:00:00.000+00:00","authorAffiliation":["University of St. Andrews","University of Glasgow","University of York","University of Leeds","Bangor University"],"authorGivenName":["C.","C.J.","G.M.","L.C.","E.","L.","N.L.","M.W.","W.R.","W.E.N."],"authorFamilyName":["Smeaton","Ladd","Havelock","Miller","Garrett","McMahon","Barlow","Skov","Gehrels","Austin"],"authorFullName":["Smeaton, C.","Ladd, C.J.","Havelock, G.M.","Miller, L.C.","Garrett, E.","McMahon, L.","Barlow, N.L.","Skov, M.W.","Gehrels, W.R.","Austin, W.E.N."],"authorOrcid":["https://orcid.org/0000-0003-4535-2555","https://orcid.org/0000-0001-5437-6474","https://orcid.org/0000-0001-5862-1596","https://orcid.org/0000-0003-2876-4312","https://orcid.org/0000-0001-9985-0651","https://orcid.org/0000-0003-0199-7108","https://orcid.org/0000-0002-2713-2543","https://orcid.org/0000-0002-7204-3865","https://orcid.org/0000-0002-5088-5834","https://orcid.org/0000-0001-6544-3468"],"catalogue":"eidc","description":"The dataset details the soil profiles described from the narrow diameter cores collected from 474 sampling sites across UK saltmarshes collected between 2018 - 2021.\nThe work was carried out under the NERC programme - Carbon Storage in Intertidal Environment (C-SIDE), NERC grant reference NE/R010846/1\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R010846/1"],"identifier":"55760544-b0a6-4845-a2e0-1cf533996c64","incomingCitationCount":0,"givenName":["C.","C.J.","G.M.","L.C.","E.","L.","N.L.","M.W.","W.R.","W.E.N."],"familyName":["Smeaton","Ladd","Havelock","Miller","Garrett","McMahon","Barlow","Skov","Gehrels","Austin"],"fullName":["Smeaton, C.","Ladd, C.J.","Havelock, G.M.","Miller, L.C.","Garrett, E.","McMahon, L.","Barlow, N.L.","Skov, M.W.","Gehrels, W.R.","Austin, W.E.N."],"keyword":["UK","Scotland","Wales","England","Carbon Storage in Intertidal Environments (C-SIDE)","Bulk density","loss on ignition (LOI)","organic carbon","wetland","soil texture","soil","sediment","salt marsh","organic matter","intertidal zone","coastal area","citizen science","carbon","blue carbon"],"keywordsPlace":["UK","Scotland","Wales","England"],"keywordsProject":["Carbon Storage in Intertidal Environments (C-SIDE)"],"keywordsOther":["Bulk density","loss on ignition (LOI)","organic carbon","wetland","soil texture","soil","sediment","salt marsh","organic matter","intertidal zone","coastal area","citizen science","carbon","blue carbon"],"licence":"Open government licence","lineage":"Across UK saltmarshes narrow diameter (30mm) soil cores were collected. The location of each coring site was recorded using Differential Global Positioning System (DGPS). Prior to analysis the samples were stored at 4 degrees Celsius at the University of St Andrews. Upon return to the laboratory the cores were described following the Troels-Smith scheme. Results were recorded on to lab sheets and transferred into an Excel file. Results were exported as comma separated value (.csv) files for ingestion into the EIDC.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0003-4535-2555","https://orcid.org/0000-0001-5437-6474","https://orcid.org/0000-0001-5862-1596","https://orcid.org/0000-0003-2876-4312","https://orcid.org/0000-0001-9985-0651","https://orcid.org/0000-0003-0199-7108","https://orcid.org/0000-0002-2713-2543","https://orcid.org/0000-0002-7204-3865","https://orcid.org/0000-0002-5088-5834","https://orcid.org/0000-0001-6544-3468"],"organisation":["University of St. Andrews","University of Glasgow","University of York","University of Leeds","Bangor University","NERC EDS Environmental Information Data Centre","The University Court of the University of St Andrews"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/55760544-b0a6-4845-a2e0-1cf533996c64","10.5285/55760544-b0a6-4845-a2e0-1cf533996c64"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["The University Court of the University of St Andrews"],"ror":["https://ror.org/04xw4m193"],"state":"published","supplementalName":["project website"],"title":"Soil profile descriptions from narrow diameter cores in UK saltmarshes collected between 2018 and 2021","version":1.0,"view":["public","tinzha"],"shortenedDescription":"The dataset details the soil profiles described from the narrow diameter cores collected from 474 sampling sites across UK saltmarshes collected between 2018 - 2021.\nThe work was carried out under the NERC programme - Carbon Storage in Intertidal Environment (C-SIDE),..."},{"publicationDate":"2017-10-20T00:00:00.000+00:00","authorAffiliation":["University of Cambridge","University of Zurich","University of Jyväskylä"],"authorGivenName":["R","H","J"],"authorFamilyName":["Thorogood","Kokko","Mappes"],"authorFullName":["Thorogood, R.","Kokko, H.","Mappes, J."],"authorOrcid":["https://orcid.org/0000-0001-5010-2177","https://orcid.org/0000-0002-5772-4881","https://orcid.org/0000-0002-1117-5629"],"authorRor":["https://ror.org/013meh722","https://ror.org/02crff812","https://ror.org/05n3dz165"],"catalogue":"eidc","description":"The data set describes foraging decisions by great tits (Parus major), held in temporary captivity.  Data were collected from birds caught from forest at the University of Jyväskylä Research Station, Konnevesi (62°37.7'N 026°17'E), Finland, and were collected during the winter of 2013-2014.  Birds were presented with (1) two different coloured plastic cups, or (2) two different artificial prey (almond pieces inside a paper packet and printed with a black and white symbol). One symbol was made bitter-tasting by soaking the almond piece in chloroquine, and learning behaviour was recorded over three trials.  Half of the birds in both experiments were presented videos of a demonstrator great tit, to provide social information about prey characteristics and unpalatability.  Data were collected to test hypotheses about the evolutionary consequences of social information use by predators as part of a NERC-funded Independent Research Fellowship.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/K00929X/1"],"identifier":"db55406b-c9a1-4a9e-88c2-2abbcb4bcad3","incomingCitationCount":2,"givenName":["Rose","R","H","J"],"familyName":["Thorogood","Kokko","Mappes"],"fullName":["Thorogood, R.","Kokko, H.","Mappes, J."],"keyword":["Konnevesi","Animal behaviour","Evolutionary ecology","Wild bird","foraging","prey defence","aposematism","Great tit","Parus major","animal behaviour","bird","evolution"],"keywordsPlace":["Konnevesi"],"keywordsTheme":["Animal behaviour","Evolutionary ecology"],"keywordsOther":["Wild bird","foraging","prey defence","aposematism","Great tit","Parus major","animal behaviour","bird","evolution"],"licence":"Open government licence","lineage":"Data on foraging decisions of wild great tits (Paris major), held in captivity temporarily, were collected between 17th October 2013 - 24th January 2014 in central Finland.  Data were generated during two procedures, with 14 out of 56 birds used to generate both parts of the dataset. Half of the birds were presented with video playback before the foraging test to provide social information about food options. ","locations":["POLYGON((18.584 58.655, 18.584 65.608, 32.416 65.608, 32.416 58.655, 18.584 58.655))"],"orcid":["https://orcid.org/0000-0001-5010-2177","https://orcid.org/0000-0002-5772-4881","https://orcid.org/0000-0002-1117-5629"],"organisation":["University of Cambridge","University of Zurich","University of Jyväskylä","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/db55406b-c9a1-4a9e-88c2-2abbcb4bcad3","10.5285/db55406b-c9a1-4a9e-88c2-2abbcb4bcad3"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/02crff812","https://ror.org/05n3dz165","https://ror.org/04xw4m193"],"state":"published","title":"Foraging behaviour of Parus major held in temporary captivity","topic":["0/Animal behaviour/","0/Evolutionary ecology/"],"version":1.0,"view":["public","tinzha"],"shortenedDescription":"The data set describes foraging decisions by great tits (Parus major), held in temporary captivity.  Data were collected from birds caught from forest at the University of Jyväskylä Research Station, Konnevesi (62°37.7'N 026°17'E), Finland, and were collected during..."},{"publicationDate":"2022-01-12T00:00:00.000+00:00","authorAffiliation":["Heriot-Watt University","Heriot Watt University"],"authorGivenName":["V.","H.","M."],"authorFamilyName":["Mitrakos","Al Mshelesh","Bridle","Desmulliez"],"authorFullName":["Mitrakos, V.","Al Mshelesh, H.","Bridle, H.","Desmulliez, M."],"authorOrcid":["https://orcid.org/0000-0001-9068-7624","https://orcid.org/0000-0002-2441-1598"],"authorRor":["https://ror.org/04mghma93"],"catalogue":"eidc","description":"The dataset consists of results of the electrochemical circle fit of the Nyquist plot generated by NOVA software to measure the Charge Transfer Resistance (RCT). Data demonstrates the curve of real and imaginary resistance against charges transmitted in the media of the carbon electrode biosensor. The change in RCT can detect the presence of the targeted antimicrobial resistance (AMR) DNA. The experiments were conducted by immersing the sensor's electrode in different concentrations of the target AMR DNA to determine the limit of detection.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R003270/1"],"identifier":"6bc69e2a-c771-4538-832e-2f6824b63474","incomingCitationCount":0,"givenName":["V.","H.","M."],"familyName":["Mitrakos","Al Mshelesh","Bridle","Desmulliez"],"fullName":["Mitrakos, V.","Al Mshelesh, H.","Bridle, H.","Desmulliez, M."],"keyword":["Antimicrobial resistance","Electrochemical sensor","Biosensor","waterborne bacteria","resistance (biological)"],"keywordsOther":["Antimicrobial resistance","Electrochemical sensor","Biosensor","waterborne bacteria","resistance (biological)"],"licence":"Open government licence","lineage":"The fabrication process involves multi LTCC layers, and screen printing of silver reference electrode (RE), carbon layer of working electrode (WE) and counter electrode (CE), and the dielectric layers. The SPCEs were functionalised with a specific (Peptide nucleic acid)  PNA probe, by electrografting through in situ generated diazonium cations. Then creating a 4-carboxyphenyl (AP) film on the electrode surface after the modification of SPCEs electrochemical by reduction of the in situ generated 4-carboxyphenyl diazonium salt, using four cyclic voltammetry (CV) scans from +0.4 to -0.6 V at a scan rate of 100mV/s. The AP film then activated via 60 min incubation in 1-Ethyl-3-(3-Dimethylaminopropyl)Carbodiimide (EDC) and NHS (N-hydroxysuccinimide) in a MES (2-(Nmorpholino) EthaneSulfonic acid), PH 5.0. After, the electrode surface rinsed in MES buffer, and incubated it in amino-modified PNA probe dispersed in droplet of PBS buffer for 60 min at room temperature. Formation of a blocking film by droplet deposition to the electrode of 1% v/v ethanolamine/PBS buffer and incubated for 30 min in room temperature. Finaly, 52 min incubation with complimentary DNA target and electrochemical impedance spectroscopy (EIS) measurements by (Metrohm-Autolab, PGSTAT204/FRA32M), (dRCT 100kHz to 0.3Hz) in a 1mM KCl + 2mM Ferri/Ferrocyanide solution. DNA strand hybridizing to probs lead to an accumulation of negative charge on the electrode surface causing an increase in the charge transfer resistance (RCT).","orcid":["https://orcid.org/0000-0001-9068-7624","https://orcid.org/0000-0002-2441-1598"],"organisation":["Heriot-Watt University","Heriot Watt University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/6bc69e2a-c771-4538-832e-2f6824b63474","10.5285/6bc69e2a-c771-4538-832e-2f6824b63474"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["Heriot-Watt University"],"ror":["https://ror.org/04mghma93","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Obaje, E. A., Cummins, G., Schulze, H., Mahmood, S., Desmulliez, M. P. Y., & Bachmann, T. T. (2016). Carbon screen-printed electrodes on ceramic substrates for label-free molecular detection of antibiotic resistance. In Journal of Interdisciplinary Nanomedicine (Vol. 1, Issue 3, pp. 93–109)","A graphene-based electrochemical competitive immunosensor for the sensitive detection of okadaic acid in shellfish, S.  Eissa  and  M.  Zourob, Nanoscale, vol. 4, no. 23, pp. 7593-7599, 2012"],"title":"Functionalisation data of a carbon electrode biosensor for detection of antimicrobial resistance","version":1.0,"view":["public","jgar"],"shortenedDescription":"The dataset consists of results of the electrochemical circle fit of the Nyquist plot generated by NOVA software to measure the Charge Transfer Resistance (RCT). Data demonstrates the curve of real and imaginary resistance against charges transmitted in the media of..."},{"publicationDate":"2024-07-25T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorFullName":["UK Pollinator Monitoring Scheme"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains information on the location of the count, some environmental variables, and the number of insects of each type counted for the Flower-Insect Timed Count survey as part of the UK Pollinator Monitoring Scheme (PoMS). It covers the years 2017 to 2021 (note that 2017 was a pilot year and has less data than subsequent years).\n\nThe “public” FIT Count asks volunteer citizen scientists to count the number of insects, identified into broad taxon groups, seen landing on the flowers of a particular target plant within a 50 cm × 50 cm quadrat during a period of ten minutes.\n\nThe “1 km square” FIT Count uses the same methodology but is carried out by PoMS volunteers and staff as part of the PoMS 1 km square survey, which takes place within a randomly allocated set of 1 km squares across the UK, and also gathers data on pan-trapped insects (see separate dataset). In 2017-2020 the 1 km square survey took place in England, Scotland and Wales only; from 2021 the survey has full UK coverage, but with limited data from Northern Ireland in 2021 which was a pilot year for that country.\n\nUK PoMS is coordinated by UKCEH, with involvement from the following partners: Bumblebee Conservation Trust, Butterfly Conservation, British Trust for Ornithology, Buglife, Hymettus, Natural History Museum, the University of Reading and University of Leeds, and working with recording schemes and societies.\n\nUKPoMS is advised and supported by a Steering Group, involving UKCEH, JNCC, DAERA, Defra, NatureScot, Welsh Government, All-Ireland Pollinators Plan, and SASA.","documentType":"GEMINI_DOCUMENT","funder":["Department for Environment Food and Rural Affairs","Welsh Government","Scottish Government","Department of Agriculture, Environment and Rural Affairs","Joint Nature Conservation Committee","Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"761cee06-cb94-476e-bb62-69ae634aa5ca","incomingCitationCount":0,"fullName":["UK Pollinator Monitoring Scheme"],"keyword":["citizen science","environmental monitoring","Pollinators","insect"],"keywordsInstrument":["citizen science","environmental monitoring"],"keywordsTheme":["Pollinators"],"keywordsOther":["insect"],"licence":"Open government licence","lineage":"Public FIT Counts are carried out at locations and dates chosen by the participants, at any time when weather conditions are suitable between 1 April and 30 September each year. A set of fourteen target flower types is provided, but participants are free to choose a different flower if a target species is not available. Guidance is provided to participants on how to select a suitable location and position a quadrat, and on how to identify the insect group categories when counting visiting insects.\n\nOne km square FIT Counts follow the same methodology for the ten-minute count, but take place in up to 95 1 km squares, during four visits each summer, aiming for one visit in each month from May to August. There will be gaps in the data where a square cannot be visited during a particular year or month.\n\nData is entered using online forms that promote consistency in data formats. QA checks are carried out on any photos provided of the target flowers, and these are corrected where the original identification is not correct. Participants can optionally add photos to show examples of the insect groups that they have seen and counted, although these photos should not be taken during the count itself (so as to avoid disturbing visiting insects) so cannot be corrected in the same way.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","Bumblebee Conservation Trust","Butterfly Conservation","British Trust for Ornithology","Hymettus","Natural History Museum","University of Reading","University of Leeds","Department for Environment, Food & Rural Affairs","Welsh Government","Scottish Government","Joint Nature Conservation Committee"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/761cee06-cb94-476e-bb62-69ae634aa5ca","10.5285/761cee06-cb94-476e-bb62-69ae634aa5ca"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Bumblebee Conservation Trust","Butterfly Conservation","British Trust for Ornithology","Hymettus","Natural History Museum","University of Reading","University of Leeds","Department for Environment, Food & Rural Affairs","Welsh Government","Scottish Government","Joint Nature Conservation Committee"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193","https://ror.org/00wngta72","https://ror.org/05jg03a59","https://ror.org/03w54w620","https://ror.org/039zvsn29","https://ror.org/05v62cm79","https://ror.org/024mrxd33","https://ror.org/00tnppw48","https://ror.org/000wh6t45","https://ror.org/04v2xmd71","https://ror.org/01jksdf22","https://ror.org/05tzsrw37"],"state":"published","title":"Flower-insect timed count data from the UK Pollinator Monitoring Scheme, 2017-2021","topic":["0/Pollinators/"],"version":1.0,"view":["public","hajd"],"shortenedDescription":"This dataset contains information on the location of the count, some environmental variables, and the number of insects of each type counted for the Flower-Insect Timed Count survey as part of the UK Pollinator Monitoring Scheme (PoMS). 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The size and weight of cones (10 per mother tree) and seeds (all seeds within each cone: total number of viable seeds, percentage viability and weight of viable seeds) were also recorded.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8a86cb01-46d5-4620-a2be-c15c7616fbe8","10.5285/8a86cb01-46d5-4620-a2be-c15c7616fbe8"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: mother tree, cone and seed phenotypes, 2007 v2","version":1.0,"view":["public","clwe"],"shortenedDescription":"Phenotypes for Scots pine mother trees and their cones/seed from 21 populations across Scotland in 2007. 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The dataset includes ancillary weather and soil physics observations made at each site.\nEddy covariance (EC) and micrometeorological observations were collected using open-path eddy covariance systems. Flux, meteorological and soil physics observations were collected and processed using harmonised protocols across all sites. \n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"0254620f-9cf1-4d5b-af3f-bd8a6af95e96","incomingCitationCount":0,"givenName":["R. ","H.M. 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Data gaps in EC data (NEE, LE, H) were filled using the Marginal Distribution Sampling approach. \n\nFurther details are available in the supporting documentation.\n","locations":["POLYGON((-1.42 50.699, -1.42 52.24, 1.45 52.24, 1.45 50.699, -1.42 50.699))"],"orcid":["https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0002-1382-3407","https://orcid.org/0000-0001-5704-9006","https://orcid.org/0000-0002-7052-354X","https://orcid.org/0000-0002-5757-7420","https://orcid.org/0000-0002-5143-5819","https://orcid.org/0000-0001-6431-9959","https://orcid.org/0000-0001-6242-8158"],"organisation":["UK Centre for Ecology & Hydrology","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0254620f-9cf1-4d5b-af3f-bd8a6af95e96","10.5285/0254620f-9cf1-4d5b-af3f-bd8a6af95e96"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Subset of turbulent energy fluxes, meteorology and soil physics observations collected at eddy covariance sites in southeast England, June 2019","topic":["0/Soil/","0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains time series observations of surface-atmosphere exchanges of sensible heat (H) and latent heat (LE) and momentum (τ) measured at UKCEH eddy covariance flux observation sites during summer 2019. 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The dataset includes ancillary weather and soil physics observations, as well as variables describing atmospheric turbulence and the quality of the turbulent flux observations.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"00ff0c86-80c2-4bb4-a38b-1cef38ce80b3","incomingCitationCount":0,"givenName":["R.","A.","N.","S.","C.D.","L.","D.","F.","Annette"],"familyName":["Morrison","Burden","Callaghan","Dixon","Evans","Ridley","Rylett","Worrall"],"fullName":["Morrison, R.","Burden, A.","Callaghan, N.","Dixon, S.","Evans, C.D.","Ridley, L.","Rylett, D.","Worrall, F."],"keyword":["Anglesey","Lowland valley","Soil","UK-SCAPE"],"keywordsPlace":["Anglesey","Lowland valley"],"keywordsTheme":["Soil"],"keywordsOther":["UK-SCAPE"],"licence":"Open government licence","lineage":"Eddy covariance (EC) and micrometeorological observations were made using an open-path eddy covariance system. Ancillary meteorological and soil physics observations were co-located with the eddy covariance station.\n\nTurbulent flux densities were calculated from the raw EC data using the EddyPRO Flux Calculation Software Version 6.1.\n\nQuality Control of EC data involved removal of statistical outliers and tests that theoretical requirements for the successful application of the EC technique were not violated significantly. \n\nData gaps in EC data (NEE, LE, H) and the partitioning of NEE into gross ecosystem production and total ecosystem production were performed using the REddyProc Package for R (Reichstein et al., 2019).\n\nFurther details are available in the supporting documentation.\n","locations":["POLYGON((-4.3 53.3, -4.3 53.32, -4.25 53.32, -4.25 53.3, -4.3 53.3))"],"orcid":["https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0002-7694-1638","https://orcid.org/0000-0003-0273-6161","https://orcid.org/0000-0002-7052-354X","https://orcid.org/0000-0001-5060-5823","https://orcid.org/0000-0002-7426-1153","https://orcid.org/0000-0002-4139-1330"],"organisation":["UK Centre for Ecology & Hydrology","Marine Management Organisation","DEFRA","Durham University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/00ff0c86-80c2-4bb4-a38b-1cef38ce80b3","10.5285/00ff0c86-80c2-4bb4-a38b-1cef38ce80b3"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Eddy covariance measurements of carbon dioxide, energy and water fluxes at a lowland valley fen, Anglesey, UK, 2015-2018","topic":["0/Soil/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains time series observations of surface-atmosphere exchanges of net ecosystem carbon dioxide exchange (NEE), sensible heat (H) and latent heat (LE), and momentum (τ) measured at a lowland valley fen located on Anglesey, North Wales, UK. \n\nTurbulent..."},{"publicationDate":"2017-02-21T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Bangor University"],"authorGivenName":["D.M.","M.R.","S.K.","J.L.","K.","J.B.","T.D.","E.R.","P.","M.G.","A.J.","P.O.","S.A.","S.","I."],"authorFamilyName":["Cooper","Marshall","Malham","Williamson","Spinney","Winterbourn","Peters","Howlett","Rajko-Nenow","Pereira","Lawler","Keenan","Thacker","Hughes","Lebron"],"authorFullName":["Cooper, D.M.","Marshall, M.R.","Malham, S.K.","Williamson, J.L.","Spinney, K.","Winterbourn, J.B.","Peters, T.D.","Howlett, E.R.","Rajko-Nenow, P.","Pereira, M.G.","Lawler, A.J.","Keenan, P.O.","Thacker, S.A.","Hughes, S.","Lebron, I."],"authorOrcid":["https://orcid.org/0000-0001-7578-7918","https://orcid.org/0000-0003-2869-0616","https://orcid.org/0000-0001-8610-9717"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/006jb1a24"],"catalogue":"eidc","description":"The data comprise water quality measurements taken from streams and rivers in the Conwy catchment and its estuary from March 2013 to October 2016. 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All sampling and analysis was carried out by trained members of staff from the Centre for Ecology & Hydrology and Bangor University.\n\nThis data was assembled under the NERC project 'The Multi-Scale Response of Water quality, Biodiversity and Carbon Sequestration to Coupled Macronutrient Cycling from Source to Sea' (Turf2Surf).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J011991/1"],"identifier":"32392c33-8cbe-434a-a582-ab8425a5062c","incomingCitationCount":0,"givenName":["D.M.","M.R.","S.K.","J.L.","K.","J.B.","T.D.","E.R.","P.","M.G.","A.J.","P.O.","S.A.","S.","I."],"familyName":["Cooper","Marshall","Malham","Williamson","Spinney","Winterbourn","Peters","Howlett","Rajko-Nenow","Pereira","Lawler","Keenan","Thacker","Hughes","Lebron"],"fullName":["Cooper, D.M.","Marshall, M.R.","Malham, S.K.","Williamson, J.L.","Spinney, K.","Winterbourn, J.B.","Peters, T.D.","Howlett, E.R.","Rajko-Nenow, P.","Pereira, M.G.","Lawler, A.J.","Keenan, P.O.","Thacker, S.A.","Hughes, S.","Lebron, I."],"keyword":["Conwy catchment","Water quality","Turf2Surf","T2S","Macronutrient Cycling Programme","MCP","Water Quality","Automatic sampling"],"keywordsPlace":["Conwy catchment"],"keywordsTheme":["Water quality"],"keywordsOther":["Turf2Surf","T2S","Macronutrient Cycling Programme","MCP","Water Quality","Automatic sampling"],"licence":"Open government licence","lineage":"Water samples were collected at the field sites either by hand or by automatic samplers.  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Data was extracted from the Access database as a comma separated value file for submission to the EIDC.","locations":["POLYGON((-4.031 52.944, -4.031 53.31, -3.592 53.31, -3.592 52.944, -4.031 52.944))"],"orcid":["https://orcid.org/0000-0001-7578-7918","https://orcid.org/0000-0003-2869-0616","https://orcid.org/0000-0001-8610-9717"],"organisation":["Centre for Ecology & Hydrology","Bangor University","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/32392c33-8cbe-434a-a582-ab8425a5062c","10.5285/32392c33-8cbe-434a-a582-ab8425a5062c"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/04xw4m193"],"state":"published","title":"Conwy stream and estuary water quality data (2013-2016) [Turf2Surf]","topic":["0/Water quality/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"The data comprise water quality measurements taken from streams and rivers in the Conwy catchment and its estuary from March 2013 to October 2016. Depending on water type and sampling location the data consist of concentrations of major cations and anions, pH, conductivity,..."},{"publicationDate":"2025-03-03T00:00:00.000+00:00","authorAffiliation":["University of South Florida","University of Glasgow","Cary Institute","University of Sydney","University of New South Wales","Cornell University","Wildlife Health Ecology Research Organization"],"authorGivenName":["A.M.","C.L.","A.A.","I.R.","A.J.","P.","M.","B.","R.K.","B.A."],"authorFamilyName":["Kramer","Faust","Castellanos","Fischhoff","Peel","Eby","Ruiz-Aravena","Borremans","Plowright","Han"],"authorFullName":["Kramer, A.M.","Faust, C.L.","Castellanos, A.A.","Fischhoff, I.R.","Peel, A.J.","Eby, P.","Ruiz-Aravena, M.","Borremans, B.","Plowright, R.K.","Han, B.A."],"authorOrcid":["https://orcid.org/0000-0002-9031-6580","https://orcid.org/0000-0002-8824-7424","https://orcid.org/0000-0002-3412-0487","https://orcid.org/0000-0001-6956-8284","https://orcid.org/0000-0003-3538-3550","https://orcid.org/0000-0001-5441-2682","https://orcid.org/0000-0001-8463-7858","https://orcid.org/0000-0002-7779-4107","https://orcid.org/0000-0002-3338-6590","https://orcid.org/0000-0002-9948-3078"],"authorRor":["https://ror.org/032db5x82","https://ror.org/00vtgdb53","https://ror.org/01dhcyx48","https://ror.org/0384j8v12","https://ror.org/03r8z3t63","https://ror.org/05bnh6r87"],"catalogue":"eidc","description":"The data provided here are model iteration objects and rasters needed to run the multi-scale modelling process and predict how the host condition affects probability of Hendra virus shedding.\nThe dataset contains predictions of three proxies for host conditions (including food shortage, rehabilitation admissions and formation of a new roost) across eastern Australia in 2008-2019. The Roost Species Distribution Model (SDM) has predictions of roost suitability. These are monthly, spatially explicit predictions of particular conditions or probability of roost occupations. The model objects are iterations of models that were initially trained on data held in figshare (https://figshare.com/s/ddb5a1584609b20f6596).\nThese data objects are linked with code provided at https://github.com/hanlab-ecol/BatOneHealth to be able to run the models and analyses. This includes comparisons of virus predictions of seven different multiscale model structures to observed Hendra virus shedding in field surveys. The purpose of this study was to determine if quantifying and incorporating host condition into epidemiological models improves predictions of virus shedding in space and time. The data objects relate to the 1,000 iterations run of this process to better able to account for uncertainty.","documentType":"GEMINI_DOCUMENT","funder":["U.S. Defense Advanced Research Projects Agency ","U.S. National Science Foundation EEID program ","Natural Environment Research Council","U.S. National Science Foundation CNH","U.S. National Science Foundation Rules of Life"],"grant":["PREEMPT D18AC00031","DEB-1717282","NE/V014730/1","DEB-1716698","EF-2133763","EF-2231624"],"identifier":"93bb37c6-ef86-4386-945d-c1a3d1e2683c","incomingCitationCount":0,"givenName":["A.M.","C.L.","A.A.","I.R.","A.J.","P.","M.","B.","R.K.","B.A."],"familyName":["Kramer","Faust","Castellanos","Fischhoff","Peel","Eby","Ruiz-Aravena","Borremans","Plowright","Han"],"fullName":["Kramer, A.M.","Faust, C.L.","Castellanos, A.A.","Fischhoff, I.R.","Peel, A.J.","Eby, P.","Ruiz-Aravena, M.","Borremans, B.","Plowright, R.K.","Han, B.A."],"keyword":["Australia","black flying fox","virus","Hendra virus","Pteropus"],"keywordsPlace":["Australia"],"keywordsOther":["black flying fox","virus","Hendra virus","Pteropus"],"licence":"Open government licence","lineage":"Each of the data objects (1,000 per component model) is related to training a component model using data sampled with replacement. These data objects are trained on field observations of host conditions (food shortage, rehabilitation admissions or formation of new roost) or locations and occupation of roost by black flying foxes (key Hendra virus host). Model parameters, predictor variables, and training are all described in the supplementary information. Each iteration only differs slightly in the training and testing data due to this resampling with replacement, allowing for slight variation in prediction among the runs. ","locations":["POLYGON((136.492 -44.335, 136.492 -8.836, 154.334 -8.836, 154.334 -44.335, 136.492 -44.335))"],"orcid":["https://orcid.org/0000-0002-9031-6580","https://orcid.org/0000-0002-8824-7424","https://orcid.org/0000-0002-3412-0487","https://orcid.org/0000-0001-6956-8284","https://orcid.org/0000-0003-3538-3550","https://orcid.org/0000-0001-5441-2682","https://orcid.org/0000-0001-8463-7858","https://orcid.org/0000-0002-7779-4107","https://orcid.org/0000-0002-3338-6590","https://orcid.org/0000-0002-9948-3078"],"organisation":["University of South Florida","University of Glasgow","Cary Institute","University of Sydney","University of New South Wales","Cornell University","Wildlife Health Ecology Research Organization","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/93bb37c6-ef86-4386-945d-c1a3d1e2683c","10.5285/93bb37c6-ef86-4386-945d-c1a3d1e2683c"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Glasgow"],"ror":["https://ror.org/032db5x82","https://ror.org/00vtgdb53","https://ror.org/01dhcyx48","https://ror.org/0384j8v12","https://ror.org/03r8z3t63","https://ror.org/05bnh6r87","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["The environmental features that are used as input data to generate the component models are stored on figshare.","Methods are detailed in the preprint.","The code to generate the component models and run multi-scale models can be found on the github repository."],"supplementalName":["Input data to multi-scale model of Hendra virus dynamics","Integrating predictors of host condition into spatiotemporal multi-scale models of virus shedding"," BatOneHealth github repository"],"title":"Component model iterations for inputs into a multi-scale model describing the effect of host conditions on Hendra virus shedding, eastern Australia, 2008-2019","version":1.0,"view":["public","elsdhi"],"shortenedDescription":"The data provided here are model iteration objects and rasters needed to run the multi-scale modelling process and predict how the host condition affects probability of Hendra virus shedding.\nThe dataset contains predictions of three proxies for host conditions (including..."},{"publicationDate":"2022-02-04T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Butterfly Conservation","British Trust for Ornithology"],"authorGivenName":["M.S.","I.","S.","C.","M.","D.B."],"authorFamilyName":["Botham","Middlebrook","Harris","Harrower","Lowe","Roy"],"authorFullName":["Botham, M.S.","Middlebrook, I.","Harris, S.","Harrower, C.","Lowe, M.","Roy, D.B."],"authorOrcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-5147-0331"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/05jg03a59","https://ror.org/03w54w620"],"catalogue":"eidc","description":"Collated indices are a relative measure of butterfly abundance across sites monitored as part of the UK Butterfly Monitoring Scheme. Data from all survey sites (standard UKBMS transects, Wider Countryside Survey transects and targeted species surveys such as timed, larval web and egg counts) are used in the calculation of these indices. The statistics are presented as log10 values. These values are centred round an arbitrary value of 2 as a mean for the time series in order to help show which years are below or above average. Collated indices are calculated annually for each individual butterfly species that has been recorded on five or more sites in that year. Indices are calculated at UK level and at individual country level for England, Scotland, Wales and Northern Ireland where sufficient data are available. Based on this criterion, collated indices have been calculated for the entire time series from 1976 (UK, England and Wales), 1979 (Scotland) and 2004 (Northern Ireland) to the current year for the majority of species, but for some rarer species this has not been possible in some years, particular those in the first part of the time series. Collated indices are calculated using a log-linear model incorporating individual site indices from all monitored sites across the UK or country for a given species in a given year. The number of sites for each species ranges from 5 to several hundred or more and fluctuates from year to year. By 2010 almost 2,000 sites were monitored in total across the UK, with this number rising to more than 3,000 over the next decade.\n\nCollated indices are calculated so that we can determine how butterfly populations are changing over time across the UK. This data can be used, for example, to determine where to target conservation efforts and more generally the condition of the UK countryside. Butterflies are recognised as important indicators of biodiversity and environmental change, for example in UK and country Biodiversity Indicators, and have been used in numerous studies of the impacts of climate and habitat change on biodiversity.\n\nThe UK Butterfly Monitoring Scheme is organized and funded by Butterfly Conservation (BC), the UK Centre for Ecology & Hydrology (UKCEH), the British Trust for Ornithology (BTO), and the Joint Nature Conservation Committee (JNCC). The UKBMS is indebted to all volunteers who contribute data to the scheme.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"f00fb86d-25c2-4f98-b882-c661511c93ac","incomingCitationCount":0,"givenName":["M.S.","I.","S.","C.","M.","D.B."],"familyName":["Botham","Middlebrook","Harris","Harrower","Lowe","Roy"],"fullName":["Botham, M.S.","Middlebrook, I.","Harris, S.","Harrower, C.","Lowe, M.","Roy, D.B."],"keyword":["Biodiversity","England","Northern Ireland","Scotland","UK-SCAPE","United Kingdom","Wales","biodiversity","butterfly","lepidopteran"],"keywordsTheme":["Biodiversity"],"keywordsOther":["England","Northern Ireland","Scotland","UK-SCAPE","United Kingdom","Wales","biodiversity","butterfly","lepidopteran"],"licence":"Non-Open government licence","lineage":"Collated indices are produced using a series of statistical models on butterfly transect counts recorded by a volunteer network. These indices are a relative measure of each species' abundance across the UK compared to the baseline in 1976. The statistics are presented as log10 values. These values are centred around an arbitrary value of 2 as a mean for the time series in order to help show which years are below or above average (a technique used in other biodiversity indicators).","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0002-0448-9144","https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0002-5147-0331"],"organisation":["UK Centre for Ecology & Hydrology","Butterfly Conservation","British Trust for Ornithology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f00fb86d-25c2-4f98-b882-c661511c93ac","10.5285/f00fb86d-25c2-4f98-b882-c661511c93ac"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/05jg03a59","https://ror.org/03w54w620","https://ror.org/04xw4m193"],"state":"published","supplementalName":["UKBMS website"],"title":"United Kingdom Butterfly Monitoring Scheme: collated indices 2020","topic":["0/Biodiversity/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"Collated indices are a relative measure of butterfly abundance across sites monitored as part of the UK Butterfly Monitoring Scheme. Data from all survey sites (standard UKBMS transects, Wider Countryside Survey transects and targeted species surveys such as timed,..."},{"publicationDate":"2023-07-20T00:00:00.000+00:00","authorAffiliation":["Met Office","University of Exeter","Universidade do Estado de Mato Grosso"],"authorGivenName":["S.","Claire","A.","E.","B.H.","T.R. "],"authorFamilyName":["New","Belcher","Crawford","de Oliveira","Marimon","Feldpausch"],"authorFullName":["New, S.","Belcher, C.","Crawford, A.","de Oliveira, E.","Marimon, B.H.","Feldpausch, T.R."],"authorOrcid":["https://orcid.org/0000-0001-7992-2179","https://orcid.org/0000-0003-3496-8290","https://orcid.org/0000-0002-2133-2886","https://orcid.org/0000-0002-6446-3376","https://orcid.org/0000-0002-6359-6281","https://orcid.org/0000-0002-6631-7962"],"authorRor":["https://ror.org/01ch2yn61","https://ror.org/03yghzc09","https://ror.org/02cbymn47"],"catalogue":"eidc","description":"This dataset includes charcoal reflectance measurements. The charcoal pieces were collected from the soil surface in tropical rainforest plots in Feliz Natal (southern Brazil, n= 75) and Pucallpa (Peru, n=14) in 2015. In total, 89 charcoal pieces were measured for reflectance. The reflectance measurements were taken in a minimum of 24 and a maximum of 70 repetitions per sample.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (Coordination for the Improvement of Higher Education Personnel, CAPES, Brazil)","SilvaCarbon "],"grant":["NE/N011570/1","PVE177-2012","NE/L002434/1"],"identifier":"b2b5498c-8eef-44b0-9610-844784f9f16b","incomingCitationCount":2,"givenName":["S.","Claire","A.","E.","B.H.","T.R. "],"familyName":["New","Belcher","Crawford","de Oliveira","Marimon","Feldpausch"],"fullName":["New, S.","Belcher, C.","Crawford, A.","de Oliveira, E.","Marimon, B.H.","Feldpausch, T.R."],"keyword":["Reflectance","charcoal","fire","tropical forest"],"keywordsOther":["Reflectance","charcoal","fire","tropical forest"],"licence":"Open government licence","lineage":"The charcoals pieces were collected from soil surface (0-5 cm depth) in tropical rainforest plots in Feliz Natal (southern Brazil, n= 75) and Pucallpa (Peru, n=14). Any organic material or soil was removed from the samples using the hydrogen peroxide (H2O2) digestion method, leaving the charcoal clean. After that, the samples were embedded in resin and then polished and then measured for reflectance in the Exeter Fire Lab.","locations":["POLYGON((-80.947 -9.449, -80.947 1.23, -56.338 1.23, -56.338 -9.449, -80.947 -9.449))"],"orcid":["https://orcid.org/0000-0001-7992-2179","https://orcid.org/0000-0003-3496-8290","https://orcid.org/0000-0002-2133-2886","https://orcid.org/0000-0002-6446-3376","https://orcid.org/0000-0002-6359-6281","https://orcid.org/0000-0002-6631-7962"],"organisation":["Met Office","University of Exeter","Universidade do Estado de Mato Grosso","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b2b5498c-8eef-44b0-9610-844784f9f16b","10.5285/b2b5498c-8eef-44b0-9610-844784f9f16b"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Exeter"],"ror":["https://ror.org/01ch2yn61","https://ror.org/03yghzc09","https://ror.org/02cbymn47","https://ror.org/04xw4m193"],"state":"published","title":"Reflectance of charcoal from tropical rainforest plots in southern Amazonia, Brazil and southwestern Amazonia, Peru, 2015","version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset includes charcoal reflectance measurements. The charcoal pieces were collected from the soil surface in tropical rainforest plots in Feliz Natal (southern Brazil, n= 75) and Pucallpa (Peru, n=14) in 2015. In total, 89 charcoal pieces were measured for reflectance...."},{"publicationDate":"2025-03-04T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["S.","J."],"authorFamilyName":["Reinsch","Hatton"],"authorFullName":["Reinsch, S.","Hatton, J."],"authorOrcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0002-9408-7981"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset holds daily data from one automated weather station (AWS) located at the Climoor field site in Clocaenog forest, North East Wales. The data are on relative humidity (percent), air temperature (degrees Celsius), rainfall (millimetres), air pressure (millibars), net radiation (millivolts), solar radiation (kilowatts per square metre per second), photosynthetic active radiation (PAR), (micromol per square metre per second), wind speed (metres per second) and wind direction (degrees). \n\nData is an extension for the AWS datasets 1999-2015, 2015-2016, 2016-2021, 2022-2023 and covering the time period January 2024 to December 2024. Data are logged in minute intervals, averaged to half-hourly. Data are sent from the field site to a UKCEH server. A working copy is created, quality assurance checks carried out and daily averages calculated from half-hourly records. Data which were not recorded are marked with “NA”, faulty data were replaced by “-9999”. Note, the rainfall sensor was broken during this time period, but the column is kept in the datafile for consistency with previous data records. Data collection, processing and quality checking was carried out by members of CEH and UKCEH staff.\n\nThe following measures were taken with sensors from Campbell Scientific: Rainfall sums are measured with an ARG100 Tipping bucket, air pressure is measured with a CS100 Barometer. Further, Solar radiation and PAR are measured using a Skye SP1110 pyranometer and a SKP215 quantum sensor from Skye Instruments. Wind direction and speed were recorded using a windsonic 2D Ultrasonic Anemometer from Windsonic.\n\nThe Climoor field experiment intends to answer questions regarding the effects of warming and drought on ecosystem processes. The reported data are collected to monitor site specific environmental conditions and their development over time. These data are important to interpret results that are collected from the climate change manipulations imposed in the field.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/Y006208/1"],"identifier":"6b3b766f-4d04-4a41-b2a4-6ca2dd1ea23a","incomingCitationCount":0,"givenName":["Sabine","S.","J."],"familyName":["Reinsch","Hatton"],"fullName":["Reinsch, S.","Hatton, J."],"keyword":["NC-UK","Climate and climate change","meteorological data","climate change","heathland"],"keywordsProject":["NC-UK"],"keywordsTheme":["Climate and climate change"],"keywordsOther":["meteorological data","climate change","heathland"],"licence":"Open government licence","lineage":"Data were recorded every minute, then automatically averaged to half-hourly data by the data-logger. The half-hourly data were transferred from loggers at the field site onto UKCEH Bangor servers via remote telemetry. Each morning, the previous day’s data was transferred to the server. Data were then averaged to daily values.\nAn automated script transferred the data into the project shared area of the shared network drive. Data quality checking was performed at the end of each calendar year. Telemetered data were processed using R. Data were averaged to daily values and inspected visually. Erroneous values were removed taken into account the annual cycle. A .csv file was produced from the quality assessed data.\n\nThe following measures were taken with sensors from Campbell Scientific: relative humidity and air temperature are recorded with an HMP45C sensor. Rainfall sums are measured with an ARG100 Tipping bucket, air pressure is measured with a CS100 Barometer and net radiation is measured with an NR-Lites sensor. Further, Solar radiation and PAR are measured using a Skye SP1110 pyranometer and a SKP215 quantum sensor from Skye Instruments. Wind direction and speed are recorded using a windsonic 2D Ultrasonic Anemometer from Windsonic.","locations":["POLYGON((-3.479 53.033, -3.479 53.077, -3.391 53.077, -3.391 53.033, -3.479 53.033))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0002-9408-7981"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/6b3b766f-4d04-4a41-b2a4-6ca2dd1ea23a","10.5285/6b3b766f-4d04-4a41-b2a4-6ca2dd1ea23a"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Daily automatic weather station (AWS) data from Climoor fieldsite in Clocaenog Forest, UK, 2024","topic":["0/Climate and climate change/"],"version":1.0,"view":["public","glenn"],"shortenedDescription":"This dataset holds daily data from one automated weather station (AWS) located at the Climoor field site in Clocaenog forest, North East Wales. The data are on relative humidity (percent), air temperature (degrees Celsius), rainfall (millimetres), air pressure (millibars),..."},{"publicationDate":"2022-10-28T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["C.","C.S.","A.W.","R.D."],"authorFamilyName":["Marston","Rowland","O'Neil","Morton"],"authorFullName":["Marston, C.","Rowland, C.S.","O'Neil, A.W.","Morton, R.D."],"authorOrcid":["https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0002-0459-506X","https://orcid.org/0000-0003-3591-1034","https://orcid.org/0000-0003-3947-6463"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This 1 km summary pixel data set represents the land surface of Great Britain and Northern Ireland, classified using two classification schemas, target and aggregate classes. The target class schema comprise 21 UKCEH land cover classes based upon Biodiversity Action Plan broad habitats. The aggregate class schema comprises 10 aggregate classes that are groupings of the 21 target classes. The aggregate classes group some of the more specialised target classes into more general classes. For example, the five coastal classes in the target class are grouped into a single aggregate class.\n\nThe 1km percentage product provides the percentage cover for each of the 21 land cover classes for 1km x 1km pixels. This product contains one band per habitat class, producing 21 and 10 band images for the target and aggregate class products respectively. The 1km dominant coverage product is based on the 1km percentage product, and reports the land cover class with the highest percentage cover for each 1km pixel. A full description of this and all UKCEH LCM2021 products are available from the LCM2021 product documentation.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"a3ff9411-3a7a-47e1-9b3e-79f21648237d","incomingCitationCount":1,"givenName":["C.","C.S.","A.W.","R.D."],"familyName":["Marston","Rowland","O'Neil","Morton"],"fullName":["Marston, C.","Rowland, C.S.","O'Neil, A.W.","Morton, R.D."],"keyword":["Great Britain","Land cover","Mapping","Biodiversity Action Plan","UK-SCAPE","habitat","land cover","map"],"keywordsPlace":["Great Britain"],"keywordsTheme":["Land cover","Mapping"],"keywordsOther":["Biodiversity Action Plan","UK-SCAPE","habitat","land cover","map"],"licence":"Non-Open government licence","lineage":"UKCEH's automated land cover algorithms classify 10 m pixels across the whole of UK. A Random Forest classifier used these to classify four composite images representing per season median surface reflectance. Seasonal images were integrated with context layers (e.g., height, aspect, slope, coastal proximity, urban proximity and so forth) to reduce confusion among classes with similar spectra. \n\nLand cover was validated by organising the 10 m pixel classification into a land parcel framework (the LCM2021 classified land parcels product). The classified land parcels were compared to known land cover producing a confusion matrix to determine overall and per class accuracy. Details are available from the documentation accompanying the data.\n\nThe 1 km percentage and dominant products are created by calculating the percentage cover for each land cover classes for every 1km x 1km pixel, then reporting the dominant land cover class with the highest percentage cover for each 1km pixel.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-2070-2187","https://orcid.org/0000-0002-0459-506X","https://orcid.org/0000-0003-3591-1034","https://orcid.org/0000-0003-3947-6463"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/a3ff9411-3a7a-47e1-9b3e-79f21648237d","10.5285/a3ff9411-3a7a-47e1-9b3e-79f21648237d"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Land Cover Map 2021 (1km summary rasters, GB and N. Ireland)","topic":["0/Land cover/","0/Mapping/"],"version":1.0,"view":["public","matnic"],"shortenedDescription":"This 1 km summary pixel data set represents the land surface of Great Britain and Northern Ireland, classified using two classification schemas, target and aggregate classes. The target class schema comprise 21 UKCEH land cover classes based upon Biodiversity Action..."},{"publicationDate":"2017-07-11T00:00:00.000+00:00","authorAffiliation":["University of Extremadura","University of Nottingham","Centre for Ecology & Hydrology"],"authorGivenName":["J.","M.","S.","C.","C.L.","Nicholas A.","A.","J.M.","J.G.","E.","J.S."],"authorFamilyName":["Guillén","Izquierdo","Young","Wells","Barnett","Beresford","Baeza","Salas","Muñóz-Serrano","Corrales-Vázquez","Muñoz-Muñoz","Tovar","Chaplow"],"authorFullName":["Guillén, J.","Izquierdo, M.","Young, S.","Wells, C.","Barnett, C.L.","Beresford, N.A.","Baeza, A.","Salas, A.","Muñóz-Serrano, A.","Corrales-Vázquez, J.M.","Muñoz-Muñoz, J.G.","Tovar, E.","Chaplow, J.S."],"authorOrcid":["https://orcid.org/0000-0002-8722-0238","https://orcid.org/0000-0002-8058-8697"],"authorRor":["https://ror.org/0174shg90","https://ror.org/01ee9ar58","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Data comprise stable element concentrations in terrestrial Reference Animals and Plants (RAPs) and corresponding whole-body concentration ratios determined in two different Mediterranean ecosystems: a Pinewood and a Dehesa (grassland with disperse tree cover). The International Commission on Radiological Protection (ICRP) RAPs considered in the Pinewood ecosystem were Pine Tree and Wild Grass; whereas in the Dehesa ecosystem those considered were Deer, Rat, Earthworm, Bee, Frog, Duck and Wild Grass.\n\nThe data include: elemental concentrations in soils; elemental concentrations in  plants, invertebrates, vertebrate tissues and estimated concentrations for vertebrate whole-organisms; individual concentration ratios (relating the fresh matter concentration in organisms to the dry matter concentration in soil); vertebrate species tissue masses; fresh to dry matter data for invertebrate species; geometric and arithmetic mean and standard deviation summaries for elemental concentrations and concentration ratios.\n\nElemental concentrations presented include  I, Li, Be, B, Na, Mg, Al, P, S, K. Ca, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Rb, Sr, Mo, Ag, Cd, Cs, Ba, Tl, Pb and U.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/L000318/1"],"identifier":"a1ab8c79-3426-43a4-ab42-6d1b218d1cc6","incomingCitationCount":2,"givenName":["Nicholas A.","J.","M.","S.","C.","C.L.","A.","J.M.","J.G.","E.","J.S."],"familyName":["Beresford","Guillén","Izquierdo","Young","Wells","Barnett","Baeza","Salas","Muñóz-Serrano","Corrales-Vázquez","Muñoz-Muñoz","Tovar","Chaplow"],"fullName":["Beresford, N.A.","Guillén, J.","Izquierdo, M.","Young, S.","Wells, C.","Barnett, C.L.","Baeza, A.","Salas, A.","Muñóz-Serrano, A.","Corrales-Vázquez, J.M.","Muñoz-Muñoz, J.G.","Tovar, E.","Chaplow, J.S."],"keyword":["Dehesa","Spain","Radioecology","Apis mellifera","Pelophylax perezi","Briza minor","Apodemus sylvaticus","Cervus elaphus","Anas platyrhynchos"],"keywordsPlace":["Dehesa","Spain"],"keywordsTheme":["Radioecology"],"keywordsOther":["Apis mellifera","Pelophylax perezi","Briza minor","Apodemus sylvaticus","Cervus elaphus","Anas platyrhynchos"],"licence":"Open government licence","lineage":"Samples of earthworms (Lumbricidae spp), bees (Apis mellifera), frogs (Pelophylax perezi), rats (Apodemus sylvaticus), deer (Cervus elaphus): duck (Anas platyrhynchos), wild grass (Briza minor), pine tree and soil were collected. Samples were prepared for analysis (dried and ground where applicable) and digested prior to ICP-MS analysis. Iodine analysis was also performed. Full materials and methods available by downloading the supporting documentation.","locations":["POLYGON((-7.539 37.864, -7.539 40.584, -4.747 40.584, -4.747 37.864, -7.539 37.864))"],"orcid":["https://orcid.org/0000-0002-8722-0238","https://orcid.org/0000-0002-8058-8697"],"organisation":["UK Centre for Ecology & Hydrology","University of Extremadura","University of Nottingham","Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/a1ab8c79-3426-43a4-ab42-6d1b218d1cc6","10.5285/a1ab8c79-3426-43a4-ab42-6d1b218d1cc6"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/0174shg90","https://ror.org/01ee9ar58","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Barnett, C.L., Beresford, N.A., Walker, L.A., Baxter, M., Wells, C., & Copplestone, D. (2013). Transfer parameters for ICRP reference animals and plants collected from a forest ecosystem. Radiation and Environmental Biophysics, 53(1), 125-149","IAEA (Contributors: Howard, B.J., Beresford, N.A.,Barnett, C.L.,  Wells, C.) 2014 Handbook of parameter values for the prediction of radionuclide transfer to wildlife. Technical Reports Series No. 479 (Beresford, N.A., Howard, B.J. [Eds]) IAEA, Vienna. "],"title":"Elemental concentrations in representative species of the ICRP's Reference Animals and Plants and associated soils in terrestrial Mediterranean ecosystems in Spain","topic":["0/Radioecology/"],"version":1.0,"view":["public","jgar"],"shortenedDescription":"Data comprise stable element concentrations in terrestrial Reference Animals and Plants (RAPs) and corresponding whole-body concentration ratios determined in two different Mediterranean ecosystems: a Pinewood and a Dehesa (grassland with disperse tree cover). The International..."},{"publicationDate":"2020-04-03T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","University of Leicester","University of Bangor"],"authorGivenName":["A.M.J.","T.R.","S.J.","H.","C.","D.","J.","R.D.","S.E."],"authorFamilyName":["Cumming","Newman","Benson","Balzter","Evans","Jones","Kaduk","Morrison","Page"],"authorFullName":["Cumming, A.M.J.","Newman, T.R.","Benson, S.J.","Balzter, H.","Evans, C.","Jones, D.","Kaduk, J.","Morrison, R.D.","Page, S.E."],"authorOrcid":["https://orcid.org/0000-0001-5704-9006","https://orcid.org/0000-0002-0361-0774","https://orcid.org/0000-0002-9053-4684","https://orcid.org/0000-0002-7052-354X","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0003-4051-3081","https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0002-3392-9241"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/04h699437","https://ror.org/006jb1a24"],"catalogue":"eidc","description":"This dataset contains time series observations of surface-atmosphere exchanges of net ecosystem carbon dioxide exchange (NEE), sensible heat (H) and latent heat (LE), and momentum (τ) for a managed lowland deep peat soil in the East Anglian Fens, England, UK. The site is managed for the production of horticultural salad crops. Measurements were made between the 22nd June 2012 and 1st January 2020 during which lettuce, leek, celery, sugar beet and potatoes crops were grown on the field.\n\nTurbulent flux densities were monitored using the micrometeorological eddy covariance (EC) technique. The dataset includes ancillary weather and soil physics observations, as well as variables describing atmospheric turbulence and the quality of the turbulent flux observations.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Department for Environment Food and Rural Affairs"],"grant":["NE/K001590/1","NE/L501839","NE/P014097/1","SP1210","SP1218"],"identifier":"13896773-01e5-48e6-bfab-c319de46b221","incomingCitationCount":0,"givenName":["A.M.J.","T.R.","S.J.","H.","C.","D.","J.","R.D.","S.E.","Alex"],"familyName":["Cumming","Newman","Benson","Balzter","Evans","Jones","Kaduk","Morrison","Page"],"fullName":["Cumming, A.M.J.","Newman, T.R.","Benson, S.J.","Balzter, H.","Evans, C.","Jones, D.","Kaduk, J.","Morrison, R.D.","Page, S.E.","Cumming, A."],"keyword":["Soil","carbon dioxide","sensible heat","latent heat","momentum","carbon dioxide exchange","fen","horticulture","crop production"],"keywordsTheme":["Soil"],"keywordsOther":["carbon dioxide","sensible heat","latent heat","momentum","carbon dioxide exchange","fen","horticulture","crop production"],"licence":"Open government licence","lineage":"Eddy covariance (EC) and micrometeorological observations were made using an open-path eddy covariance system. Ancillary meteorological and soil physics observations were co-located with the eddy covariance station.\n\nTurbulent flux densities were calculated from the raw EC data using the EddyPRO® Flux Calculation Software Version 6.1.\n\nQuality Control of EC data involved removal of statistical outliers and tests that theoretical requirements for the successful application of the EC technique were not violated significantly. Data gaps in EC data (NEE, LE, H) and the partitioning of NEE into gross ecosystem production and total ecosystem production were performed using the REddyProc Package for R (Reichstein et al., 2019).\n\nFurther details are available in the supporting documentation.","locations":["POLYGON((-0.148 51.992, -0.148 53.002, 1.796 53.002, 1.796 51.992, -0.148 51.992))"],"orcid":["https://orcid.org/0000-0001-5704-9006","https://orcid.org/0000-0002-0361-0774","https://orcid.org/0000-0002-9053-4684","https://orcid.org/0000-0002-7052-354X","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0003-4051-3081","https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0002-3392-9241"],"organisation":["UK Centre for Ecology & Hydrology","University of Leicester","University of Bangor","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/13896773-01e5-48e6-bfab-c319de46b221","10.5285/13896773-01e5-48e6-bfab-c319de46b221"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/04h699437","https://ror.org/006jb1a24","https://ror.org/04xw4m193"],"state":"published","title":"Eddy Covariance measurements of carbon dioxide, energy and water flux at an intensively cultivated lowland deep peat soil, East Anglia, UK, 2012 to 2020","topic":["0/Soil/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains time series observations of surface-atmosphere exchanges of net ecosystem carbon dioxide exchange (NEE), sensible heat (H) and latent heat (LE), and momentum (τ) for a managed lowland deep peat soil in the East Anglian Fens, England, UK. The site..."},{"publicationDate":"2018-08-08T00:00:00.000+00:00","authorAffiliation":["Queen Mary University of London","Natural History Museum of Denmark","Universiti of Malaysia Sabah","Muséum national d'Histoire naturelle"],"authorGivenName":["R.","I.D.","K.","H.","G.","E.","T.P.","S.J."],"authorFamilyName":["Drinkwater","Schnell","Bohmann","Bernard","Veron","Clare","Gilbert","Rossiter"],"authorFullName":["Drinkwater, R.","Schnell, I.D.","Bohmann, K.","Bernard, H.","Veron, G.","Clare, E.","Gilbert, T.P.","Rossiter, S.J."],"authorOrcid":["https://orcid.org/0000-0001-6892-1664","https://orcid.org/0000-0002-0436-785X","https://orcid.org/0000-0001-7907-064X","https://orcid.org/0000-0003-4247-3976","https://orcid.org/0000-0002-6563-3365","https://orcid.org/0000-0002-5805-7195"],"authorRor":["https://ror.org/026zzn846","https://ror.org/040v70252","https://ror.org/03wkt5x30"],"catalogue":"eidc","description":"This dataset contains the results from a metabarcoding study of terrestrial leech blood meals to detect differences in the diets of two leech species, Haemadipsa picta and Haemadipsa sumatrana. Mammal taxa were identified using metabarcoding of 16s rRNA and comparisons of operational taxonomic units (OTUs) to a curated reference database from NCBI (National Center for Biotechnology Information) GenBank. All leeches were collected from the Stability of Altered Forest Ecosystems project (SAFE; www.SAFEproject.net) as part of the NERC Human Modified tropical Forest Programme and the LOMBOK consortia (Land-use Options for Maintaining BiOdiversity & eKosystem functions). Leech samples were collected at different sites across a habitat gradient, to assess these invertebrates as molecular sampling tools for mammals. Individuals were pooled before amplicon sequencing with Illumina MiSeq 150-200bp x2. The resultant raw sequences were filtered and clustered at 97%, curated and then assigned to the reference database using BLAST and MEGAN programmes. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/K016148/1"],"identifier":"3affed0d-fe6f-4916-89e3-e672639191e5","incomingCitationCount":0,"givenName":["Rosie","R.","I.D.","K.","H.","G.","E.","T.P.","S.J."],"familyName":["Drinkwater","Schnell","Bohmann","Bernard","Veron","Clare","Gilbert","Rossiter"],"fullName":["Drinkwater, R.","Schnell, I.D.","Bohmann, K.","Bernard, H.","Veron, G.","Clare, E.","Gilbert, T.P.","Rossiter, S.J."],"keyword":["Sabah","Borneo","Biodiversity","Haemadipsa picta","Haemadipsa sumatrana"],"keywordsPlace":["Sabah","Borneo"],"keywordsTheme":["Biodiversity"],"keywordsOther":["Haemadipsa picta","Haemadipsa sumatrana"],"licence":"Open government licence","lineage":"Individuals of both species were collected at 25m2 vegetation plots in the forest blocks (A-F, LFE, LF1-3 & VJR) at the SAFE project Sabah (corresponding to second order points). Plots are approximately 173m apart and all plots were sampled 4 times between February 2015 and June 2015. Sampling consists of searching the leaf litter and undergrowth for leeches for a fixed time of 20 minutes. Individuals are kept in RNALater to stabilise DNA until extraction. DNA extraction of pools of ten individual leeches was undertaken using a digestion buffer with modified QiaQuick (Qiagen) protocol and dual tagged PCR in triplicate reactions (details in Drinkwater et al. in review).  After screening samples for successful PCR amplification, a total of 41 samples of pooled Haemadipsa sumatrana and 49 pooled Haemadipsa picta from six sites remained for sequencing (B, F, D, LF, LFE, VJR). Amplicons were pooled for library build following Carøe et al, 2017) and sequencing with Illumina MiSeq 150-200bp x2. Sumaclust was used for OTU clustering (Mercier et al., 2013) and LULU was used for post-clustering filtering (Frøslev et al., 2017). This resulted in the final contingency table comparing mammal detections with leech pool. \n\nCarøe, C., Gopalakrishnan, S., Vinner, L., Mak, S. S. T., Sinding, M. H. S., Samaniego, J. A., Wales, N., Sicheritz-Ponten, M., Gilbert, M. T. P. (2017). Single-tube library preparation for degraded DNA. Methods in Ecology and Evolution, 9(2), 410-419. https://doi.org/10.1111/2041-210X.12871\n\nFrøslev, T. G., Kjøller, R., Bruun, H. H., Ejrnæs, R., Brunbjerg, A. K., Pietroni, C., & Hansen, A. J. (2017). Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates. Nature Communications, 8(1), 1188. https://doi.org/10.1038/s41467-017-01312-x\n\nMercier, C., Boyer, F., Bonin, A., & Coissac, E. (2013). SUMATRA and SUMACLUST: fast and exact comparison and clustering of sequences. In Programs and Abstracts of the SeqBio workshop (pp. 27-29).","locations":["POLYGON((113.75 4.182, 113.75 7.111, 119.353 7.111, 119.353 4.182, 113.75 4.182))"],"orcid":["https://orcid.org/0000-0001-6892-1664","https://orcid.org/0000-0002-0436-785X","https://orcid.org/0000-0001-7907-064X","https://orcid.org/0000-0003-4247-3976","https://orcid.org/0000-0002-6563-3365","https://orcid.org/0000-0002-5805-7195"],"organisation":["Queen Mary University of London","Natural History Museum of Denmark","Universiti of Malaysia Sabah","Muséum national d'Histoire naturelle","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/3affed0d-fe6f-4916-89e3-e672639191e5","10.5285/3affed0d-fe6f-4916-89e3-e672639191e5"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/026zzn846","https://ror.org/040v70252","https://ror.org/03wkt5x30","https://ror.org/04xw4m193"],"state":"published","supplementalName":["SAFE project website"],"title":"Mammal occurrence identified from metabarcoding of two leech species from Sabah, Malaysia","topic":["0/Biodiversity/"],"version":1.0,"view":["public","phtr"],"shortenedDescription":"This dataset contains the results from a metabarcoding study of terrestrial leech blood meals to detect differences in the diets of two leech species, Haemadipsa picta and Haemadipsa sumatrana. Mammal taxa were identified using metabarcoding of 16s rRNA and comparisons..."},{"publicationDate":"2023-11-22T00:00:00.000+00:00","authorAffiliation":["Department of Zoology","University College Dublin","University of Liège"],"authorGivenName":["A.","J.","T.","S.C.L.","C.","H.","M."],"authorFamilyName":["Raulo","Firth","Coulson","Knowles","Lamberth","English","Quicray","Dale"],"authorFullName":["Raulo, A.","Firth, J.","Coulson, T.","Knowles, S.C.L.","Lamberth, C.","English, H.","Quicray, M.","Dale, J."],"authorOrcid":["https://orcid.org/0000-0003-4860-7840","https://orcid.org/0000-0001-7183-4115","https://orcid.org/0000-0001-9371-9003","https://orcid.org/0000-0002-2368-4623","https://orcid.org/0000-0002-2851-7146","https://orcid.org/0000-0002-8854-6707","https://orcid.org/0000-0002-9657-0627","https://orcid.org/0000-0003-2853-7152"],"authorRor":["https://ror.org/052gg0110","https://ror.org/05m7pjf47","https://ror.org/00afp2z80"],"catalogue":"eidc","description":"This data set is a combination of trapping data, tracking data, vegetation/habitat data and data on the gut microbiome composition of wild rodents caught in 4 ha study site in Holly Hill in Wytham Woods, Oxford, UK, from November 2018 to November 2019. Three species of rodents were trapped with Sherman live-traps fortnightly for 12 months: wood mouse (Apodemus sylvaticus), yellow-necked mouse (Apodemus flavicollis) and bank vole (Myodes glaerolus). Upon capture, they were measured, weighted, sexed, aged and a faecal sample was collected from all rodent individuals for microbiome analyses. All rodents were released to their location of capture. \n\nFirst time each individual was captured, they were injected with a permanent subcutaneous Radio-Frequency Identification(RFID)-tag (Passive Integrated Transponder-tag). The tagged rodents were subsequently tracked from February to November 2019 with a set of 120 custom-made tracking devices (loggers). Loggers recorded to time-stamped presence of any tagged individual that passed near it, producing occurrence data suitable for inferring spatiotemporal activity patterns of rodents, such as temporal niches, home ranges and social networks. Bacterial DNA extracted from faecal samples were used to profile their gut microbiome composition.\n\nThe study area was surveyed for vegetation and microhabitat variation by gathering habitat data of each 10 x 10 m grid square across the 4 ha plot. Data included list of plant species (visible in late May), coverage by the main ground cover types, canopy openness and amount of dead wood in each grid square. \n\nThis work was funded by a NC3Rs Fellowship to Sarah Knowles, and NERC independent Research Fellowship to Sarah Knowles (NE/L011867/1)\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/L011867/1"],"identifier":"043513e5-406c-4477-89aa-c96059acb232","incomingCitationCount":0,"givenName":["A.","J.","T.","S.C.L.","C.","H.","M."],"familyName":["Raulo","Firth","Coulson","Knowles","Lamberth","English","Quicray","Dale"],"fullName":["Raulo, A.","Firth, J.","Coulson, T.","Knowles, S.C.L.","Lamberth, C.","English, H.","Quicray, M.","Dale, J."],"keyword":["Microbiome","microbiota","transmission","gut microbiome","trapping","Sherman","wild mouse","wild","mouse","wood mouse","bank vole","yellow-necked mouse","Apodemus","Myodes","RFID-tracking","social network analysis","home range analysis","vegetation survey","microhabitat"],"keywordsOther":["Microbiome","microbiota","transmission","gut microbiome","trapping","Sherman","wild mouse","wild","mouse","wood mouse","bank vole","yellow-necked mouse","Apodemus","Myodes","RFID-tracking","social network analysis","home range analysis","vegetation survey","microhabitat"],"licence":"Open government licence","lineage":"Wild rodents were trapped fortnightly, tagged and continuously monitored with tracking technology for 10 months. This is a natural rodent population and no experimental manipulations were made. Upon capture, faecal samples were collected from the rodents. Faecal samples were stored without buffer in -80 C. In winter 2019-2020 DNA was extracted from the faecal samples of wood mice, yellow-necked mice and bank voles, and their gut microbiome was characterised from this by amplification and sequencing of the V4-V5 region of bacterial 16S rRNA marker gene. In May 2020 the study area was surveyed for vegetation and microhabitat variation. Details of the data generation and the cleaning process can be found from the supporting documentation.","locations":["POLYGON((-1.355 51.752, -1.355 51.784, -1.295 51.784, -1.295 51.752, -1.355 51.752))"],"orcid":["https://orcid.org/0000-0003-4860-7840","https://orcid.org/0000-0001-7183-4115","https://orcid.org/0000-0001-9371-9003","https://orcid.org/0000-0002-2368-4623","https://orcid.org/0000-0002-2851-7146","https://orcid.org/0000-0002-8854-6707","https://orcid.org/0000-0002-9657-0627","https://orcid.org/0000-0003-2853-7152"],"organisation":["Department of Zoology","University College Dublin","University of Liège","NERC EDS Environmental Information Data Centre","University of Oxford"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/043513e5-406c-4477-89aa-c96059acb232","10.5285/043513e5-406c-4477-89aa-c96059acb232"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/05m7pjf47","https://ror.org/00afp2z80","https://ror.org/04xw4m193"],"state":"published","supplementalName":["Raulo, A. (2021). Transmission ecology of the gut microbiota in wild mice (Doctoral dissertation, University of Oxford)"],"title":"Wild rodent tracking and gut microbiome data, Holly Hill, Wytham Woods, UK, 2018-2019","version":1.0,"view":["public","margla"],"shortenedDescription":"This data set is a combination of trapping data, tracking data, vegetation/habitat data and data on the gut microbiome composition of wild rodents caught in 4 ha study site in Holly Hill in Wytham Woods, Oxford, UK, from November 2018 to November 2019. Three species..."},{"publicationDate":"2016-05-03T00:00:00.000+00:00","authorAffiliation":["Bangor University","Centre for Ecology & Hydrology"],"authorGivenName":["H.","A.","M."],"authorFamilyName":["Ford","Garbutt","Skov"],"authorFullName":["Ford, H.","Garbutt, A.","Skov, M."],"authorOrcid":["https://orcid.org/0000-0002-9882-6972","https://orcid.org/0000-0002-9145-9786","https://orcid.org/0000-0002-7204-3865"],"authorRor":["https://ror.org/006jb1a24","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"The dataset comprises the spider and beetle abundance sampled by suction sampling in each 1metre (m) x 1m quadrat. Sampling was conducted at six salt marsh sites at four spatial scales: 1 m (the minimal sampling unit) nested within a hierarchy of increasing scales of 1-10 m, 10-100 m and 100-1000 m. Three of the sites were in Morecambe Bay, North West England and three of the sites were in Essex, South East England. All samples were taken during the winter and summer of 2013.\n\nThis data was collected as part of Coastal Biodiversity and Ecosystem Service Sustainability (CBESS): NE/J015644/1. The project was funded with support from the Biodiversity and Ecosystem Service Sustainability (BESS) programme. BESS is a six-year programme (2011-2017) funded by the UK Natural Environment Research Council (NERC) and the Biotechnology and Biological Sciences Research Council (BBSRC) as part of the UK's Living with Environmental Change (LWEC) programme. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J015644/1"],"identifier":"aff42a31-c314-444e-bdff-2275a8ee93da","incomingCitationCount":0,"givenName":["Hilary","H.","A.","M."],"familyName":["Ford","Garbutt","Skov"],"fullName":["Ford, H.","Garbutt, A.","Skov, M."],"keyword":["Morecambe Bay","Essex","CBESS (Coastal Biodiversity and Ecosystem Service Sustainability)","BESS (Biodiversity and Ecosystem Service Sustainability)","suction sampling","Araneae","Coleoptera","beetle","spider","invertebrate","grassland","salt marsh"],"keywordsPlace":["Morecambe Bay","Essex"],"keywordsProject":["CBESS (Coastal Biodiversity and Ecosystem Service Sustainability)","BESS (Biodiversity and Ecosystem Service Sustainability)"],"keywordsOther":["suction sampling","Araneae","Coleoptera","beetle","spider","invertebrate","grassland","salt marsh"],"licence":"Open government licence","lineage":"Ground dwelling spiders and beetles within each quadrat were sampled using suction sampling, counted and identified to species level. Results were recorded onto field sheets. These data were transferred into an Excel file. Results were exported as comma separated value files for ingestion into the EIDC.\nThe location of the sample sites was determined by randomly allocated quadrats. Each site consisted of a rectangular area of saltmarsh between 400 x 500 metre (m) to 1000 x 1000 m in size, dependent upon saltmarsh length (parallel to shore) and width (perpendicular to shore), including part of the low, mid and high marsh zones. Twenty two 1 x 1 m quadrats were randomly allocated to each site rectangle using R (R Development Core Team, 2014) to specify four different spatial scales (A = 1 quadrat only, B = 3 quadrats at 1 m to 10 m apart, C = 6 quadrats at 10 m to 100 m apart, D = 12 quadrats at 100 m to 1000 m or site maximum). ","locations":["POLYGON((-3 51.687, -3 54.25, 1.005 54.25, 1.005 51.687, -3 51.687))"],"orcid":["https://orcid.org/0000-0002-9882-6972","https://orcid.org/0000-0002-9145-9786","https://orcid.org/0000-0002-7204-3865"],"organisation":["Bangor University","Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/aff42a31-c314-444e-bdff-2275a8ee93da","10.5285/aff42a31-c314-444e-bdff-2275a8ee93da"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Bangor University"],"ror":["https://ror.org/006jb1a24","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Coastal Biodiversity and Ecosystem Service Sustainability (CBESS) spider and beetle abundance on salt marsh sites at Morecambe Bay and Essex","version":1.0,"view":["public","danor"],"shortenedDescription":"The dataset comprises the spider and beetle abundance sampled by suction sampling in each 1metre (m) x 1m quadrat. Sampling was conducted at six salt marsh sites at four spatial scales: 1 m (the minimal sampling unit) nested within a hierarchy of increasing scales of..."}],"facets":[{"fieldName":"topic","displayName":"Topic","hierarchical":true,"admin":false,"results":[{"name":"Agriculture","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CPeople%27s+Trust+for+Endangered+Species&facet=recordType%7CDataset&facet=funder%7CNatural+Environment+Research+Council&facet=funder%7CFrankfurt+Zoological+Society&facet=resourceStatus%7CAvailable&facet=topic%7C0%2FAgriculture%2F","active":false,"count":69},{"name":"Animal 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