{"numFound":31,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CScottish+Government%E2%80%99s+Rural+%26+Environment+Science+%26+Analytical+Services+Division%2C+through+their+Strategic+Research+Programmes+%282006-2011%2C+2011-2016+and+2016%E2%80%932022%29&facet=funder%7CBiotechnology+and+Biological+Sciences+Research+Council","nextPage":"http://catalogue.ceh.ac.uk/eidc/documents?page=2&facet=funder%7CScottish+Government%E2%80%99s+Rural+%26+Environment+Science+%26+Analytical+Services+Division%2C+through+their+Strategic+Research+Programmes+%282006-2011%2C+2011-2016+and+2016%E2%80%932022%29&facet=funder%7CBiotechnology+and+Biological+Sciences+Research+Council","results":[{"publicationDate":"2019-03-15T00:00:00.000+00:00","authorAffiliation":["James Hutton Institute","RSPB Centre for Conservation Science","Royal Botanic Garden Edinburgh","Nick Hodgetts Botanical Services","University of Cambridge"],"authorGivenName":["R.J.","P.E.","C.J.","R.L.","N.G.","G.R.","N.A.","S.","J.A.","A.F.S."],"authorFamilyName":["Mitchell","Bellamy","Ellis","Hewison","Hodgetts","Iason","Littlewood","Newey","Stockan","Taylor"],"authorFullName":["Mitchell, R.J.","Bellamy, P.E.","Ellis, C.J.","Hewison, R.L.","Hodgetts, N.G.","Iason, G.R.","Littlewood, N.A.","Newey, S.","Stockan, J.A.","Taylor, A.F.S."],"authorOrcid":["https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0003-2234-2119","https://orcid.org/0000-0003-1916-8746","https://orcid.org/0000-0003-4461-8833","https://orcid.org/0000-0002-2264-964X"],"authorRor":["https://ror.org/03rzp5127","https://ror.org/0349vqz63","https://ror.org/013meh722"],"catalogue":"eidc","description":"This dataset contains a list of all known birds, bryophytes, fungi, invertebrates, lichens and mammals that use oak (Quercus petraea and Quercus robur) in the UK. In total 2300 species are listed in the dataset.  For each species we provide a level of association with oak, ranging from obligate (only found on oak) to cosmopolitan (found on a wide range of other tree species). Data on the ecology of each oak associated species is provided: part of tree used, use made of tree (feeding, roosting, breeding), age of tree, woodland type, tree form (coppice, pollarded, or natural growth form) and season when the tree was used.  Data on use or otherwise by each of the 2300 species of 30 other alternative tree species (Acer campestre, Acer pseudoplatanus, Alnus glutinosa, Betula pendula, Betula pubescens, Carpinus betulus, Castanea sativa, Fagus sylvatica, Fraxinus excelsior, Ilex aquifolium, Larix spp, Malus sylvestris, Picea abies, Pinus nigra ssp. laricio, Pinus sylvestris, Populus tremula, Prunus avium, Pseudotsuga menziesii, Quercus cerris, Quercus rubra, Sorbus aria, Sorbus aucuparia, Sorbus torminalis, Taxus baccata, Thuja plicata, Tilia cordata, Tilia platyphyllos, Tilia vulgaris, Tsuga heterophylla, Ulmus glabra) was also collated.  A complete list of data sources is provided.","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N022831/1"],"identifier":"22b3d41e-7c35-4c51-9e55-0f47bb845202","incomingCitationCount":4,"givenName":["R.J.","P.E.","C.J.","R.L.","N.G.","G.R.","N.A.","S.","J.A.","A.F.S."],"familyName":["Mitchell","Bellamy","Ellis","Hewison","Hodgetts","Iason","Littlewood","Newey","Stockan","Taylor"],"fullName":["Mitchell, R.J.","Bellamy, P.E.","Ellis, C.J.","Hewison, R.L.","Hodgetts, N.G.","Iason, G.R.","Littlewood, N.A.","Newey, S.","Stockan, J.A.","Taylor, A.F.S."],"keyword":["Biodiversity","Douglas fir","European ash","Crab apple","European beech","Black alder","Sycamore","Field maple","Pedunculate oak","English oak","Sessile oak","Downy birch","Spanish chestnut","European black pine","Scots pine","Aspen","Sweet cherry","Turkey oak","Northern red oak","Common whitebeam","Mountain ash","Rowan","Yew","Cedar","Small-leaved lime","Linden","Common oak","oak"],"keywordsTheme":["Biodiversity"],"keywordsOther":["Douglas fir","European ash","Crab apple","European beech","Black alder","Sycamore","Field maple","Pedunculate oak","English oak","Sessile oak","Downy birch","Spanish chestnut","European black pine","Scots pine","Aspen","Sweet cherry","Turkey oak","Northern red oak","Common whitebeam","Mountain ash","Rowan","Yew","Cedar","Small-leaved lime","Linden","Common oak","oak"],"licence":"Open government licence","lineage":"Existing data sources were used to collate the list of oak associated species, information on their ecology and their use of alternative tree species. The data was collated in a pre-defined standard format to enable consistency across taxa.  The data sources included quality controlled databases of records of species, peer reviewed literature, published books and grey literature. A complete list of data sources used is provided together with an assessment of the quality of that data: peer reviewed or quality controlled dataset versus grey literature and whether the data was based on a UK or non-UK source.\n \n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0001-8151-2769","https://orcid.org/0000-0003-2234-2119","https://orcid.org/0000-0003-1916-8746","https://orcid.org/0000-0003-4461-8833","https://orcid.org/0000-0002-2264-964X"],"organisation":["James Hutton Institute","RSPB Centre for Conservation Science","Royal Botanic Garden Edinburgh","Nick Hodgetts Botanical Services","University of Cambridge","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/22b3d41e-7c35-4c51-9e55-0f47bb845202","10.5285/22b3d41e-7c35-4c51-9e55-0f47bb845202"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/03rzp5127","https://ror.org/0349vqz63","https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","title":"Oak-associated biodiversity in the UK (OakEcol)","topic":["0/Biodiversity/"],"version":1.0,"view":["public","phtr"],"shortenedDescription":"This dataset contains a list of all known birds, bryophytes, fungi, invertebrates, lichens and mammals that use oak (Quercus petraea and Quercus robur) in the UK. In total 2300 species are listed in the dataset.  For each species we provide a level of association with..."},{"publicationDate":"2024-08-22T00:00:00.000+00:00","authorAffiliation":["University of Aberdeen","Muséum National d'Histoire Naturelle ","Boise State University "],"authorGivenName":["K.","O.","E.","L.M.","G.","B."],"authorFamilyName":["Britton","Czére","Gutierrez","Reynard","Duncan","de Roos"],"authorFullName":["Britton, K.","Czére, O.","Gutierrez, E.","Reynard, L.M.","Duncan, G.","de Roos, B."],"authorOrcid":["https://orcid.org/0000-0002-9478-5966","https://orcid.org/0000-0002-9732-4583","https://orcid.org/0000-0002-9120-6236","https://orcid.org/0000-0001-5732-1532","https://orcid.org/0000-0001-6943-9773","https://orcid.org/0000-0002-2750-3914"],"catalogue":"eidc","description":"Vitamin D (25(OH)D3 and 1,25(OH)D3) concentrations of incrementally-sampled preserved human hair from non-mortuary contexts at the Yup’ik archaeological site of Nunalleq Alaska (~1650 AD). Multi-isotope isotope data (carbon, nitrogen, sulphur, oxygen and hydrogen) for the same samples are found in accompanying files. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"identifier":"8d5af777-384c-4114-af6b-69cdac239810","incomingCitationCount":0,"givenName":["K.","O.","E.","L.M.","G.","B."],"familyName":["Britton","Czére","Gutierrez","Reynard","Duncan","de Roos"],"fullName":["Britton, K.","Czére, O.","Gutierrez, E.","Reynard, L.M.","Duncan, G.","de Roos, B."],"keyword":["Archaeology","palaeodiet","health","nutrition","stable isotopes","metabolomics"],"keywordsOther":["Archaeology","palaeodiet","health","nutrition","stable isotopes","metabolomics"],"licence":"Open government licence","lineage":"The dataset was generated as a part of the NERC-funded project NE/X012980/1 ‘Determining vitamin D status in precontact Western Alaska: a new method for exploring past health and dietary adaptations to high-latitude living’, as well as from an earlier (internally-allocated) BBSRC-funded pilot study (in the case of some of the isotope data). Vitamin D data were all generated at the University of Aberdeen, and isotope data were generated at SUERC (carbon, nitrogen, sulphur) and Boise State University (oxygen, hydrogen). ","locations":["POLYGON((-161.89 59.71, -161.89 59.71, -161.89 59.71, -161.89 59.71, -161.89 59.71))"],"orcid":["https://orcid.org/0000-0002-9478-5966","https://orcid.org/0000-0002-9732-4583","https://orcid.org/0000-0002-9120-6236","https://orcid.org/0000-0001-5732-1532","https://orcid.org/0000-0001-6943-9773","https://orcid.org/0000-0002-2750-3914"],"organisation":["University of Aberdeen","Muséum National d'Histoire Naturelle ","Boise State University ","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8d5af777-384c-4114-af6b-69cdac239810","10.5285/8d5af777-384c-4114-af6b-69cdac239810"],"resourceStatus":"Embargoed","resourceType":"Dataset","rightsHolder":["University of Aberdeen"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Vitamin D and stable isotope data from human hair from the archaeological site, Nunalleq, Alaska","version":1.0,"view":["public","simgil"],"shortenedDescription":"Vitamin D (25(OH)D3 and 1,25(OH)D3) concentrations of incrementally-sampled preserved human hair from non-mortuary contexts at the Yup’ik archaeological site of Nunalleq Alaska (~1650 AD). Multi-isotope isotope data (carbon, nitrogen, sulphur, oxygen and hydrogen) for..."},{"publicationDate":"2021-02-08T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["L.R.","M.","C.M.","A.","H.","B.A."],"authorFamilyName":["Norton","Wagner","Wood","Pinder","Brentegani","Hunt","Risser","Dodd"],"authorFullName":["Norton, L.R.","Wagner, M.","Wood, C.M.","Pinder, A.","Brentegani, M.","Hunt, A.","Risser, H.","Dodd, B.A."],"authorOrcid":["https://orcid.org/0000-0002-0394-2998","https://orcid.org/0000-0002-9494-6272"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This set of data includes records of vegetation species and characteristics, soil quality metrics and aspects of farm management relating to a single field on each sampled farm.   Data were collected in 2018, from farms across Great Britain belonging to the Pasture Fed Livestock Association (PFLA).  \n\nThe data were collected by the UK Centre of Ecology & Hydrology, during a project funded by the BBSRC, seeking to evidence the impacts of pasture fed livestock approaches on grassland parameters, in particular, sward composition and associated soil qualities.","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"identifier":"78ca9a01-107b-4f33-8561-9c3e64db7e02","incomingCitationCount":3,"givenName":["L.R.","M.","C.M.","A.","H.","B.A."],"familyName":["Norton","Wagner","Wood","Pinder","Brentegani","Hunt","Risser","Dodd"],"fullName":["Norton, L.R.","Wagner, M.","Wood, C.M.","Pinder, A.","Brentegani, M.","Hunt, A.","Risser, H.","Dodd, B.A."],"keyword":["Agriculture","Environmental survey","Biodiversity","Soil","farm","vegetation","soil"],"keywordsTheme":["Agriculture","Environmental survey","Biodiversity","Soil"],"keywordsOther":["farm","vegetation","soil"],"licence":"Open government licence","lineage":"Data were collected by trained members of UKCEH staff, according to standardised protocols in the summer of 2018.  Vegetation and management records were collected on electronic recording devices.  Soil samples were analysed at UKAS Accredited labs at UKCEH Lancaster.  All data were transferred to secure databases at UKCEH Lancaster once collected.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-0394-2998","https://orcid.org/0000-0002-9494-6272"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/78ca9a01-107b-4f33-8561-9c3e64db7e02","10.5285/78ca9a01-107b-4f33-8561-9c3e64db7e02"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Soil metrics and vegetation data from pasture fed livestock farms across Great Britain, 2018","topic":["0/Agriculture/","0/Environmental survey/","0/Biodiversity/","0/Soil/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This set of data includes records of vegetation species and characteristics, soil quality metrics and aspects of farm management relating to a single field on each sampled farm.   Data were collected in 2018, from farms across Great Britain belonging to the Pasture..."},{"publicationDate":"2022-10-11T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744"],"catalogue":"eidc","description":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government"],"grant":["NE/K012177/1","BB/L012243/1"],"identifier":"1c9367fb-ea87-47a1-8257-d9fed54215e7","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Phenology","Pinus sylvestris","Scots pine","Caledonian pinewood","adaptive trait variation","phenotype","common garden experiment","growth","phenology","tree"],"keywordsTheme":["Phenology"],"keywordsOther":["Pinus sylvestris","Scots pine","Caledonian pinewood","adaptive trait variation","phenotype","common garden experiment","growth","phenology","tree"],"licence":"Open government licence","lineage":"A multi-site field trial was established at three sites in Scotland in 2012 using five year old Scots pine trees. Each site contains 8 families from each of 21 native Caledonian pinewood provenances. Two of the sites (FE and FS) have four randomised blocks and the other (FW) has three randomised blocks.\n\nTree height and basal stem diameter were measured at the end of each growing season from 2013 to 2020 for trees growing at two of the field sites (FE and FW) and in 2020 for trees growing at the third (FS). \n\nPhenology assessments were performed in spring at each site from 2015 to 2019 (the survey was not completed in 2020 due to the COVID-19 pandemic).\n","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre","The James Hutton Institute"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1c9367fb-ea87-47a1-8257-d9fed54215e7","10.5285/1c9367fb-ea87-47a1-8257-d9fed54215e7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: field phenotypes, 2013-2020, version 2","topic":["0/Phenology/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020."},{"publicationDate":"2023-05-30T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Unaffiliated","Botanical Society of Britain and Ireland","Vegetation Survey and Assessment Ltd"],"authorGivenName":["L.E. ","P. ","R. ","S.L.","J.","R.F.","O.L."],"authorFamilyName":["Ridding","Hawes","Walls","Pilkington","Bailey","Pywell","Pescott"],"authorFullName":["Ridding, L.E.","Hawes, P.","Walls, R.","Pilkington, S.L.","Bailey, J.","Pywell, R.F.","Pescott, O.L."],"authorOrcid":["https://orcid.org/0000-0003-3141-8795","https://orcid.org/0000-0001-6431-9959","https://orcid.org/0000-0002-0685-8046"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/02krbn758"],"catalogue":"eidc","description":"Vascular plant and bryophyte survey data from a 33-year chronosequence on bare chalk, used to investigate primary succession. The bare chalk plots were created from archaeological excavations on Down Farm, north Dorset, between the years 1986 and 2018, resulting in 13 different plots. The vascular plant survey was carried out in July 2019 using 50 cm x 50 cm quadrats. Quadrats were recorded every 1 m along a 16 m transect in each of the 13 plots. The bryophyte survey was carried out in February 2020 using 20 cm x 20 cm quadrats, along the same transects for 11 of the 13 plots. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"grant":["NE/N018125/1 "],"identifier":"358eb380-74a0-4acd-9df2-696fdf13a6d7","incomingCitationCount":0,"givenName":["L.E. ","P. ","R. ","S.L.","J.","R.F.","O.L."],"familyName":["Ridding","Hawes","Walls","Pilkington","Bailey","Pywell","Pescott"],"fullName":["Ridding, L.E.","Hawes, P.","Walls, R.","Pilkington, S.L.","Bailey, J.","Pywell, R.F.","Pescott, O.L."],"keyword":["Dorset","Environmental survey","vascular plant","succession","chalk","bryophyte"],"keywordsPlace":["Dorset"],"keywordsTheme":["Environmental survey"],"keywordsOther":["vascular plant","succession","chalk","bryophyte"],"licence":"Open government licence","lineage":"A total of 13 transects (16 m in length) were set up in July 2019, with one in each of the excavated blocks dated 1986, 2004–2008, and 2013–2018 (2 blocks were excavated in 2016). The percentage cover of vascular plant species were recorded in 50 cm x 50 cm quadrats every 1 m along each of the 13 transects, giving a total of 208 quadrats. Vascular plants were identified to species level, with the exception of Taraxacum microspecies. The percentage cover of bryophytes were recorded in February 2020 using the same methodology, but with a 20 cm x 20 cm quadrat. Two plots were not recorded for bryophytes, the first of which (excavated in 2006) was due to rubble left on the plot, which would have influenced the colonisation of bryophytes and the second plot (excavated in 2016) was excluded due to time constraints, as there was already another plot recorded of this age. Bryophytes were identified to species level, with the exception of a few small and/or infertile individuals, where it was only possible to classify specimens to a group level (affecting some Didymodon and Bryum species).\nData were collected by experienced field ecologists. Paper data sheets were digitised into Excel and were checked for any anomalies.\n","locations":["POLYGON((-2.007 50.929, -2.007 50.933, -2.001 50.933, -2.001 50.929, -2.007 50.929))"],"orcid":["https://orcid.org/0000-0003-3141-8795","https://orcid.org/0000-0001-6431-9959","https://orcid.org/0000-0002-0685-8046"],"organisation":["UK Centre for Ecology & Hydrology","Unaffiliated","Botanical Society of Britain and Ireland","Vegetation Survey and Assessment Ltd","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/358eb380-74a0-4acd-9df2-696fdf13a6d7","10.5285/358eb380-74a0-4acd-9df2-696fdf13a6d7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/02krbn758","https://ror.org/04xw4m193"],"state":"published","title":"Vascular plant and bryophyte survey from a 33-year chronosequence on bare chalk, Dorset, 2019-2020","topic":["0/Environmental survey/"],"version":1.0,"view":["public","shofer"],"shortenedDescription":"Vascular plant and bryophyte survey data from a 33-year chronosequence on bare chalk, used to investigate primary succession. The bare chalk plots were created from archaeological excavations on Down Farm, north Dorset, between the years 1986 and 2018, resulting in..."},{"publicationDate":"2019-04-26T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Bangor University","Rothamsted Research"],"authorGivenName":["S.","I.","A.R.","A.M.","H.","D.R.","J.M.","R.","A.","D.L.","P.O.","A.J.","M.R.","T.H.","M.","A.P.","M.G.","K.S.","B.","N.","B.A."],"authorFamilyName":["Reinsch","Lebron","Sánchez-Rodríguez","Carswell","Carter","Chadwick","Cotton","Guyatt","Harvey","Hunt","Jones","Keenan","Lawlor","Marshall","Misselbrook","Patel","Pinder","Pereira","Saunders","Tanna","Thompson","Emmett"],"authorFullName":["Reinsch, S.","Lebron, I.","Sánchez-Rodríguez, A.R.","Carswell, A.M.","Carter, H.","Chadwick, D.R.","Cotton, J.M.","Guyatt, H.","Harvey, R.","Hunt, A.","Jones, D.L.","Keenan, P.O.","Lawlor, A.J.","Marshall, M.R.","Misselbrook, T.H.","Patel, M.","Pinder, A.P.","Pereira, M.G.","Saunders, K.S.","Tanna, B.","Thompson, N.","Emmett, B.A."],"authorOrcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0001-8610-9717","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0003-2869-0616","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0002-2713-4389"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/051h34p92"],"catalogue":"eidc","description":"The data consist of soil physicochemical and biological data for three soil depths (0-15, 15-30 and 30-60 cm) from a winter wheat field experiment located at two research sites in the United Kingdom. Soil samples were collected between April 2017 and August 2017. Extractions and measurements were carried out thereafter. The sites were Rothamsted Research at North Wyke in Devon and Bangor University at Henfaes Research Station in North Wales.\n\nAt each site measurements were taken from 15 plots, organised within a randomised complete block design where 5 plots did not receive fertilizers (controls), 5 plots received food-based digestate, and 5 plots received acidified food based digestate and the nitrification inhibitor 3,4-dimethylpyrazole (DMPP; ADNI). Soil samples were taken within 2 weeks of digestate application and shortly before winter wheat harvest.\n\nMicrobial community composition and nitrogen genes were measured on the same soil samples and are presented in a separate dataset (https://catalogue.ceh.ac.uk/id/391c0294-07f1-4856-b592-428bd44055ca).\n\nSoil samples were taken by members of staff from Centre of Ecology & Hydrology (Bangor), Bangor University, School of Environment, Natural Resources & Geography Sustainable Agricultural Sciences, and Rothamsted Research North Wyke. Measurements were carried out Rothamsted Research Harpenden and the Centre of Ecology & Hydrology (Wallingford).\n\nData was collected for the Newton Fund project “UK-China Virtual Joint Centre for Improved Nitrogen Agronomy”. Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC - Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"90df9dfa-a0c8-4ead-a13d-0a0a13cda7ab","incomingCitationCount":0,"givenName":["S.","I.","A.R.","A.M.","H.","D.R.","J.M.","R.","A.","D.L.","P.O.","A.J.","M.R.","T.H.","M.","A.P.","M.G.","K.S.","B.","N.","B.A.","Sabine"],"familyName":["Reinsch","Lebron","Sánchez-Rodríguez","Carswell","Carter","Chadwick","Cotton","Guyatt","Harvey","Hunt","Jones","Keenan","Lawlor","Marshall","Misselbrook","Patel","Pinder","Pereira","Saunders","Tanna","Thompson","Emmett"],"fullName":["Reinsch, S.","Lebron, I.","Sánchez-Rodríguez, A.R.","Carswell, A.M.","Carter, H.","Chadwick, D.R.","Cotton, J.M.","Guyatt, H.","Harvey, R.","Hunt, A.","Jones, D.L.","Keenan, P.O.","Lawlor, A.J.","Marshall, M.R.","Misselbrook, T.H.","Patel, M.","Pinder, A.P.","Pereira, M.G.","Saunders, K.S.","Tanna, B.","Thompson, N.","Emmett, B.A."],"keyword":["CINAg","CENTRE FOR IMPROVED NITROGEN AGRONOMY","fertilisers","nitrogen","digestate","nitrogen genes","diversity indices","Operational taxonomic unit","microbial community composition","soil properties"],"keywordsProject":["CINAg","CENTRE FOR IMPROVED NITROGEN AGRONOMY"],"keywordsTheme":["fertilisers","nitrogen","digestate","nitrogen genes","diversity indices","Operational taxonomic unit","microbial community composition"],"keywordsOther":["soil properties"],"licence":"Open government licence","lineage":"Soil samples were taken by members of the sites. At North Wyke and Henfaes farm, staff from CEH Bangor helped taking the samples. Two sets of soil cores were taken. One was sent in cooling boxes on ice to CEH Bangor for measuring soil physicochemical properties. The second set was send to Rothamsted Research Harpenden for the analysis of nitrogen genes and microbial community composition (related dataset). The topsoil 0-15 cm were taken with the same type of corer across the sites, samples below 15 cm soil depth were sampled with corers available at the sites. Samples were wet sieved to 5 mm by staff from Bangor University and CEH Bangor. Subsamples of these were analysed for physicochemical and biological parameters.\n\nNitrate (NO3‒), Ammonium (NH4+), Dissolved Organic Carbon (DOC), Dissolved Organic Nitrogen (DON), amino acids, peptides and proteins: extraction with 0.5 M Potassium Sulphate) K2SO4, 5 g soil and 25 ml extractant, after sieving through 5 mm. The supernatant was stored at −20 degrees Celsius until analyses. (Bangor University)\n\nTotal dissolved organic carbon (DOC) and total dissolved Nitrogen (TDN) were measured using a Multi N/C 2100/2100 analyser (AnalytikJena AG, Jena, Germany). Dissolved organic Nitrogen (DON) was calculated by subtracting ammonium (NH4+) and nitrate (NO3−) from the TDN value. (Bangor University)\n\nAmmonium in the supernatant was determined colorimetrically using the salicylate method of Mulvaney (1996) and NO3− following the salicylate method of Miranda et al. (2001) in an Epoch® microplate spectrophotometer (Bio Tek Instruments Inc., Winooski, VT). (Bangor University)\n\nMicrobial biomass carbon and nitrogen were calculated in a similar way than DOC and DON but the 5 grams of soil were kept for 7 days in a desiccator with chloroform (to kill the microorganisms). The difference between DOC, DON after these 7 days (and after extraction as explained before) and the initial values (calculated in the previous paragraph) between 0.45 for microbial C and 0.54 for microbial N were microbial C and microbial N, respectively. (Bangor University)\n\nAmino acids and peptides were measured using a Cary Eclipse Fluorescence Spectrophotometer with a ProStar Solvent Delivery Module (Varian, USA). (Bangor University)\nTexture. Particle size distribution was measured using a Beckman-Coulter LS 13320 laser diffraction particle size analyser.  We manually quarter 0.5 g subsample from the soil, remove organic matter using Hydrogen peroxide (H2O2) and transfer the sample into 250 mL bottle, we added 5 mL of 5 percent Calgon and shaked overnight. The entire contents of the bottle was introduced to the laser analyser for measuring particles size distribution. (CEH Bangor)\n\nSoil water content and loss on ignition (LOI). Soil initially dried at 25 degrees Celsius for 14 days, followed by weight a 10 gram subsample into a crucible and put into an oven at 105 degrees Celsius for 24 hours, the weight loss provides the soil water content. The same crucible with the dry soil is introduced into a Carbolite furnace at 375 degrees Celsius for 16 hours, this second weight loss is quantified and reported as Loss on ignition (LOI). (CEH Bangor)\n\npH and electrical conductivity (EC). In a beaker we add 25ml deionised water into 10g field moist soil; we allowed 30 minutes equilibration time with stirring at time=0 and 15 minutes, we measure pH using Corning 220 pH meter, VWR combination electrode 662-1805. EC is measured after pH in the same beaker using a Jenway 4510 with a 662-1805 electrode. pH in CaCl2 is measured after EC following addition of 2 mL 0.125 mole (M) Calcium Chloride (CaCl2). (CEH Bangor)\n\nPermanganate oxidizable carbon (POXC). We manually quartered 2.5g of soil subsample and analyse for POXC using 0.2M KMnO4 following the method described in Weil et al., 2003. (CEH Bangor)\n\nCitrate-P. We manually quarter 0.5 grams of soil and analyse for citrate extractable phosphorous following the method described in DeLuca et al. (2015). (CEH Bangor)\n\nAggregate size distribution.  We sieved about 1 gram of air-dry soil through a stack of 2 mm and 1 mm sieves, the fraction collected into the 1 mm sieve was introduced into a Beckman-Coulter LS 13320 laser diffraction particle size analyser and measured for the size distribution. (CEH Bangor)\n\nTotal carbon and nitrogen was measured on a Vario EL which uses oxidative combustion followed by thermal conductivity detection (CEH Lancaster).\n\nTotal phosphorus was measured at CEH Lancaster. Total phosphorus is digested with a H2O2/Sulphuric Acid (H2SO4) based digestion reagent mix (along with selenium and lithium sulphate) and subsequent colorimetric analysis carried out on a Seal discrete analyser (CEH Lancaster).\n\nAll results were entered into Excel spreadsheets providing individual datasets for each set of N parameters. Data were exported from Excel as .csv files for ingestion into the EIDC.","locations":["POLYGON((-4.022 50.767, -4.022 53.241, -3.892 53.241, -3.892 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0001-8610-9717","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0003-2869-0616","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0002-2713-4389"],"organisation":["Centre for Ecology & Hydrology","Bangor University","Rothamsted Research","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre","UK Centre for Ecology & Hydrology"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/90df9dfa-a0c8-4ead-a13d-0a0a13cda7ab","10.5285/90df9dfa-a0c8-4ead-a13d-0a0a13cda7ab"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/051h34p92","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Miranda, K.M., Espey, M.G., & Wink, D.A. (2001). A Rapid, Simple Spectrophotometric Method for Simultaneous Detection of Nitrate and Nitrite. Nitric Oxide, 5(1), 62–71. https://doi.org/10.1006/niox.2000.0319","Islam, K.R., Stine, M.A., Gruver, J.B., Samson-Liebig, S.E., & Weil, R.R. (2003). Estimating active carbon for soil quality assessment: A simplified method for laboratory and field use. American Journal of Alternative Agriculture, 18(1), 3–17.","DeLuca, T.H., Glanville, H.C., Harris, M., Emmett, B.A., Pingree, M.R.A., de Sosa, L.L., … Jones, D.L. (2015). A novel biologically-based approach to evaluating soil phosphorus availability across complex landscapes. Soil Biology and Biochemistry, 88, 110–119."],"supplementalName":["Centre for Improved Nitrogen Agronomy project website"],"title":"Soil chemical and physical properties from a digestate (winter wheat trial) experiment at North Wyke and Henfaes Farm, UK (2017)","version":1.0,"view":["public","danor"],"shortenedDescription":"The data consist of soil physicochemical and biological data for three soil depths (0-15, 15-30 and 30-60 cm) from a winter wheat field experiment located at two research sites in the United Kingdom. Soil samples were collected between April 2017 and August 2017. Extractions..."},{"publicationDate":"2023-06-12T00:00:00.000+00:00","authorAffiliation":["Universiti Putra Malaysia","University of Cambridge","Wild Asia","IPB University, Bogor","Sinar Mas Agro Resources and Technology Research Institute","UK Centre for Ecology & Hydrology","IPB University","University of Oxford","Nottingham University"],"authorGivenName":["B.","W. M.","M.F.","J.","I.","D.","J-P.","P.","K.","A.J.","J.A.","S.H.","M.","V.J.","E.C."],"authorFamilyName":["Azhar","Wan Zaki","Harianja","Stone","Barrock","Buchori","Caliman","Drewer","Hidayat","Howlett","Siti Zulaikah","Jones","Luke","Naim","Popkin","Reiss-Woolever","Turner"],"authorFullName":["Azhar, B.","Wan Zaki, W.M.","Harianja, M.F.","Stone, J.","Barrock, I.","Buchori, D.","Caliman, J.","Drewer, J.","Hidayat, P.","Howlett, K.","Siti Zulaikah, A.J.","Jones, J.A.","Luke, S.H.","Naim, M.","Popkin, M.","Reiss-Woolever, V.J.","Turner, E.C."],"authorOrcid":["https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-1020-9161","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2715-2234"],"authorRor":["https://ror.org/02e91jd64","https://ror.org/013meh722","https://ror.org/05smgpd89","https://ror.org/00pggkr55","https://ror.org/052gg0110","https://ror.org/01ee9ar58"],"catalogue":"eidc","description":"This dataset includes results from social and environmental surveys of 27 oil palm smallholders and farms in Selangor, Malaysia. Environmental data includes: information on size of plot, crop type and cover, GPS location, vegetation cover, vegetation height, canopy density, epiphyte cover, soil pH, soil moisture, palm herbivory and palm health. Social data includes information (all anonymised) on: plot area, number of palms, sociodemographic data, plantation management practices applied, knowledge and value assigned to wildlife, and yield. Data were collected from March to September 2022.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"grant":["BB/T012366/1"],"identifier":"81b02484-a87e-4a49-baba-678654059091","incomingCitationCount":0,"givenName":["B.","W. M.","M.F.","J.","I.","D.","J-P.","P.","K.","A.J.","J.A.","S.H.","M.","V.J.","E.C."],"familyName":["Azhar","Wan Zaki","Harianja","Stone","Barrock","Buchori","Caliman","Drewer","Hidayat","Howlett","Siti Zulaikah","Jones","Luke","Naim","Popkin","Reiss-Woolever","Turner"],"fullName":["Azhar, B.","Wan Zaki, W.M.","Harianja, M.F.","Stone, J.","Barrock, I.","Buchori, D.","Caliman, J.","Drewer, J.","Hidayat, P.","Howlett, K.","Siti Zulaikah, A.J.","Jones, J.A.","Luke, S.H.","Naim, M.","Popkin, M.","Reiss-Woolever, V.J.","Turner, E.C."],"keyword":["Selangor","Banting","oil palm","smallholder","environment","soil","vegetation","crop","social"],"keywordsOther":["Selangor","Banting","oil palm","smallholder","environment","soil","vegetation","crop","social"],"licence":"Open government licence","lineage":"Environmental and social data were collected in a series of field campaigns, led by researchers from Universiti Putra Malaysia (UPM) and supported by University of Cambridge. \n\nEnvironmental data collection methods included visual inspection of plots to record cover of different crop types, and using handheld GPS units to record plantation boundaries and size of plantations. At four points distributed across the plantation and separated by 20m, we also made direct measurements of vegetation, palm and soil characteristics. These included field readings of canopy openness using a convex spherical densiometer, direct measures of vegetation height and cover (into categories by eye within a 3m x3m area), and field measures of soil pH and moisture using a Suplong probe. We also scored height, health, % epiphyte cover on the trunk, and level of herbivory by eye on the closest palm to each point. We also measured leaf litter depth.\n\nSocial data were collected through face to face interviews with smallholders, at a time convenient to the smallholders. Ethical permission for interviews were gained from the University of Cambridge Department of Psychology ethics board before work took place, no information was withheld from participants and full written consent was obtained in advance.\n\nData were entered digitally by field teams and returned to the University of Cambridge for quality and error checking, and to ensure a standard format.\n","locations":["POLYGON((101.282 2.387, 101.282 3.038, 101.861 3.038, 101.861 2.387, 101.282 2.387))"],"orcid":["https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-1020-9161","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2715-2234"],"organisation":["Universiti Putra Malaysia","University of Cambridge","Wild Asia","IPB University, Bogor","Sinar Mas Agro Resources and Technology Research Institute","UK Centre for Ecology & Hydrology","IPB University","University of Oxford","Nottingham University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/81b02484-a87e-4a49-baba-678654059091","10.5285/81b02484-a87e-4a49-baba-678654059091"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/02e91jd64","https://ror.org/013meh722","https://ror.org/05smgpd89","https://ror.org/00pggkr55","https://ror.org/052gg0110","https://ror.org/01ee9ar58","https://ror.org/04xw4m193"],"state":"published","title":"Socioecological data from smallholder oil palm plantations in Selangor, Peninsular Malaysia, 2022","version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset includes results from social and environmental surveys of 27 oil palm smallholders and farms in Selangor, Malaysia. Environmental data includes: information on size of plot, crop type and cover, GPS location, vegetation cover, vegetation height, canopy..."},{"publicationDate":"2019-04-24T00:00:00.000+00:00","authorAffiliation":["Rothamsted Research","Centre for Ecology & Hydrology","Bangor University"],"authorGivenName":["A.","M.","I.M.","P.R.","R.I.","T.I.","A.M.","T.H.","R.","A.R.","D.R.","D.L.","N.J.","U.","S."],"authorFamilyName":["Blaud","Abadie","Clark","Hirsch","Griffiths","Goodall","Carswell","Misselbrook","Shaw","Sánchez-Rodríguez","Chadwick","Jones","Cowan","Skiba","Reinsch"],"authorFullName":["Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Griffiths, R.I.","Goodall, T.I.","Carswell, A.M.","Misselbrook, T.H.","Shaw, R.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L.","Cowan, N.J.","Skiba, U.","Reinsch, S."],"authorOrcid":["https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0001-8659-6092","https://orcid.org/0000-0003-4649-0677"],"authorRor":["https://ror.org/0347fy350","https://ror.org/00pggkr55","https://ror.org/006jb1a24"],"catalogue":"eidc","description":"The data nitrogen gene data, soil biodiversity indices and microbial community composition, for three soil depths (0-15, 15-30 and 30-60 cm) from a three-cut silage plot trial located at three grassland sites within the UK collected between April 2016 and October 2016. The sites were Rothamsted Research at North Wyke in Devon, Bangor University at Henfaes Research Station in North Wales and Easter Bush in Scotland.\n\nAt each site measurements were taken from 16 plots, organised within a randomised complete block design where 4 plots did not receive fertilizers (controls), 4 plots received urea only, 4 plots received urea and urea-inhibitors, and 4 plots received ammonium-nitrate (Nitram). Fertiliser was applied three times and three cuts were performed, all parameters measured were following a fertiliser application. Samples were taken before the fertilizer additions, at peak growth and before the last silage cut.\n\nSoil chemical parameters were: soil nitrate, ammonium, dissolved organic carbon and nitrogen, amino acids and peptides, soil organic matter content as loss-on-ignition, pH, sodium, potassium, calcium, magnesium, permanganate oxdisable carbon citric acid extractable phosphorous, Olsen-P and total carbon, nitrogen and phosphorus. Soil biological measure were: microbial biomass carbon and nitrogen. Soil physico-chemical parameters were measured on the same samples and are available in a related dataset measured on the same soil samples and are presented in a separate dataset in the project data series (https://catalogue.ceh.ac.uk/id/7a87dde4-b54e-49b0-8751-1d59e8aebb90).\n\nMeasurements were undertaken by members of staff from the Centre of Ecology & Hydrology (Bangor, Edinburgh, Lancaster, Wallingford), Bangor University, School of Environment, Natural Resources & Geography and Rothamsted Research, Sustainable Agricultural Sciences, North Wyke.\n\nData was collected for the Newton Fund project \"UK-China Virtual Joint Centre for Improved Nitrogen Agronomy\". Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC -  Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"59f81d41-a789-4c5c-8ab8-36baa7ac2c55","incomingCitationCount":0,"givenName":["S.","A.","M.","I.M.","P.R.","R.I.","T.I.","A.M.","T.H.","R.","A.R.","D.R.","D.L.","N.J.","U."],"familyName":["Reinsch","Blaud","Abadie","Clark","Hirsch","Griffiths","Goodall","Carswell","Misselbrook","Shaw","Sánchez-Rodríguez","Chadwick","Jones","Cowan","Skiba"],"fullName":["Reinsch, S.","Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Griffiths, R.I.","Goodall, T.I.","Carswell, A.M.","Misselbrook, T.H.","Shaw, R.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L.","Cowan, N.J.","Skiba, U."],"keyword":["CINAg","Centre for improved Nitrogen agronomy","Soil","Urease Inhibitor","Soil properties","grassland","nitrogen","fertiliser","soil"],"keywordsProject":["CINAg","Centre for improved Nitrogen agronomy"],"keywordsTheme":["Soil"],"keywordsOther":["Urease Inhibitor","Soil properties","grassland","nitrogen","fertiliser","soil"],"licence":"Open government licence","lineage":"Soil samples were taken by members of the sites. At North Wyke and Henfaes farm, staff from CEH Bangor helped taking the samples. Two sets of soil cores were taken. One was sent in cooling boxes on ice to CEH Bangor for measuring soil physicochemical properties. The second set was sent to Rothamsted Research Harpenden for the analysis of nitrogen genes and microbial community composition (related dataset). The topsoil 0-15 cm were taken with the same type of corer across the sites, samples below 15 cm soil depth were sampled with corers available at the sites. Samples were wet sieved to 5 mm by staff from Bangor University and CEH Bangor. Subsamples of these were analysed for physicochemical and biological parameters.\n\nDNA extractions were performed by Rothamsted Research Harpenden. Extracts were analyzed for nitrogen genes at Rothamsted Research in Harpenden. Extracts were also sent to CEH Wallingford for analyses of Operational Taxonomic Units (OTU's).\n\nSoil community DNA was extracted from 0.25 gams soil using the MoBio DNA PowerSoil DNA isolation kit (Mo Bio Laboratories, Inc. Carlsbad, CA), following manufacturer’s protocol. Extracted DNA was quantified by fluorometer Qubit® 2.0 dsDNA BR Assay Kit (Thermo Fisher Scientific) and quality checked by nanodrop (Thermo Fisher Scientific).\n\nQuantitative-polymerase chain reaction (qPCR) protocols were as detailed in De Sosa et al. 2018.\n\nMicrobial nitrogen cycling gene abundance was investigated by qPCR targeting specific genes or genetic regions. Bacterial and archaeal communities were targeted via the 16S rRNA genes, while the fungal community abundance was targeted by the ITS region. The different genes involved in soil nitrogen cycling were investigated: \n•\tNitrogen fixation (nifH gene)\n•\tNitrification by targeting the ammonia oxidising bacteria (AOB) and archaea (AOA) (amoA gene)\n•\tDenitrifiers via the nitrite reductase (nirK and nirS genes) and the nitrous oxide reductase (nosZ genes clade I and II)\n•\tDegradation of urea was also assessed by targeting the ureC gene\n\nqPCR amplifications were performed in 10 μL volumes containing 5 μL of QuantiFast (Qiagen, Manchester, UK), 2.8 μL of nuclease-free water (Severn Biotech, Kidderminster, UK), 0.1 μL of each primer (1 μM) and 2 μL of template DNA at 5 ng μL−1, using a CFX384 Touch® Real-Time PCR Detection System (Bio-Rad, Hemel Hempstead, UK). \n\nStandards for each molecular target were obtained using a 10 fold serial dilution of PCR products amplified from an environmental reference DNA (also used as positive control) and purified by gel extraction using the Wizard® SV Gel and PCR Clean Up System (Promega, Southampton, UK) following the manufacturer's instruction and quantified by fluorometer Qubit® 2.0 dsDNA BR Assay Kit (Thermo FisherScientific). \n\nStandard curve template DNA and the negative/positive controls were amplified in triplicate. Amplification conditions for all qPCR assays consisted in 2 steps: first denaturation at 95 degrees Celsius for 5 minutes followed by 40 cycles at 95 degrees Celsius for 10 seconds and 60 degrees Celsius for 30 seconds that included annealing, elongation and reading. Each amplification was followed by melting curve (increase in temperature from 60 degrees Celsius to 95 degrees Celsius, with a reading every 0.5degrees Celsius) to assess the specificity of each assay.\n\nThe efficiency of the qPCR varied between 85.2 percent and 95.9 percent (except nozII 74.4 percent, amplicon 746 bp long), and R2 between 0.987 and 0.999. The melting curves showed specificity for all the genes, except as expected for the fungal Internal Transcribed Spacer (ITS), that showed the amplification of products of different lengths, due to the variability in length of the ITS region between different fungal taxa (Manter and Vivanco, 2007).\n\nMicrobial diversity indices:\nExtracted DNA was supplied from Rothamsted Research in Harpenden (see section 5.4.13 in main supporting document) for amplicon sequencing at the facilities of the Molecular Ecology Group, Centre for Ecology & Hydrology, Wallingford. <50 μL volumes of DNA extract were supplied in 96-well plate format, these were subject to:\n•\t16S rRNA amplicon sequencing as per Kozich 2013 (Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform), utilising V3-V4 region primers\n•\tITS rRNA amplicon sequencing employing the Kozich 2013 strategy, utilizing ITS primers by Ihrmark 2012 (New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities)\n\nAmplicons were sequenced on Illumina MiSeq platform with V3 chemistry. Resulting sequences were demultiplexed using Illumina Basespace. 16S amplicons were processed using in-house developed pipelines for quality filtering, merging and taxonomic assignment (GreenGenes database) of operational taxonomic units (OTUs). ITS amplicons were processed using the R package Dada2 for quality filtering, merging. \nR package Vegan was used to analyse amplicon sequences. Bacterial and fungal Shannon’s Index diversity scores for each sample were produced from rarefied data using diversity function. Species richness for each sample were similarly produced using ‘specnumber’ function.\n\nBacterial phylum level frequencies were produced from taxonomically identified OTU sequences (using Greengenes database), these values are a percentage of the rarefied total.\n\nAll results were entered into CSV spreadsheet.","locations":["POLYGON((-4.022 50.767, -4.022 55.873, -3.191 55.873, -3.191 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0001-8659-6092"],"organisation":["UK Centre for Ecology & Hydrology","Rothamsted Research","Centre for Ecology & Hydrology","Bangor University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/59f81d41-a789-4c5c-8ab8-36baa7ac2c55","10.5285/59f81d41-a789-4c5c-8ab8-36baa7ac2c55"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/006jb1a24","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Manter, D. K., & Vivanco, J. M. (2007). Use of the ITS primers, ITS1F and ITS4, to characterize fungal abundance and diversity in mixed-template samples by qPCR and length heterogeneity analysis. Journal of Microbiological Methods, 71(1), 7–14.","Kozich, J.J., Westcott, S.L., Baxter, N.T., Highlander, S.K., & Schloss, P.D. (2013). Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform. Applied and Environmental Microbiology, 79(17), 5112–5120.","de Sosa, L.L., Glanville, H.C., Marshall, M.R., Schnepf, A., Cooper, D.M., Hill, P.W., … Jones, D.L. (2018). Stoichiometric constraints on the microbial processing of carbon with soil depth along a riparian hillslope. Biology and Fertility of Soils, 54(8), 949–963. "],"supplementalName":["Kozich 2013 ","GreenGenes database","The UK-China Virtual Joint Centre for Improved Nitrogen Agronomy (CINAG)"],"title":"Soil biological properties from an inorganic fertiliser (grass trial) experiment at North Wyke, Henfaes Farm and Easter Bush, UK (2016)","topic":["0/Soil/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"The data nitrogen gene data, soil biodiversity indices and microbial community composition, for three soil depths (0-15, 15-30 and 30-60 cm) from a three-cut silage plot trial located at three grassland sites within the UK collected between April 2016 and October 2016...."},{"publicationDate":"2025-04-11T00:00:00.000+00:00","authorAffiliation":["University of Reading","University of Warwick","Cabinet Office","Forest Research","University of Oxford","UK Centre for Ecology & Hydrology","University of Birmingham","Leiden University"],"authorGivenName":["L.J.","M.","M.S.J.","T.","A.","O.R.","G.A.","G.M.","N","K","R.W.","D","A.S.","I.M.","C."],"authorFamilyName":["Shaw","Rabiey","Garcia","Clarke","Broome","Corbett","Booth","Barrett","Preston","Barsoum","Schonrogge","Jackson","Ray","Dudley","Kamerling","Speed"],"authorFullName":["Shaw, L.J.","Rabiey, M.","Garcia, M.S.J.","Clarke, T.","Broome, A.","Corbett, L.J.","Booth, O.R.","Barrett, G.A.","Preston, G.M.","Barsoum, N.","Schonrogge, K.","Jackson, R.W.","Ray, D.","Dudley, A.S.","Kamerling, I.M.","Speed, C."],"authorOrcid":["https://orcid.org/0000-0002-4985-7078","https://orcid.org/0000-0001-8463-9087","https://orcid.org/0000-0002-7745-6351","https://orcid.org/0000-0003-0619-2085","https://orcid.org/0000-0003-1509-0179","https://orcid.org/0000-0003-3882-4438","https://orcid.org/0000-0003-0122-6493","https://orcid.org/0000-0002-2042-4105","https://orcid.org/0000-0002-8975-8728","https://orcid.org/0000-0003-3321-8631"],"authorRor":["https://ror.org/05v62cm79","https://ror.org/01a77tt86","https://ror.org/007f5s288","https://ror.org/03wcc3744","https://ror.org/052gg0110","https://ror.org/00pggkr55","https://ror.org/03angcq70","https://ror.org/027bh9e22"],"catalogue":"eidc","description":"This dataset contains information on tree, site and soil properties from three oak woodland sites in southern England: Writtle Forest, Monks Wood, and Stratfield Brake. Data were collected in 2016 to investigate the relationship between Acute Oak Decline (AOD) symptoms and local environmental factors. The study included 10 symptomatic and 10 asymptomatic trees at each site.\n\nTree characteristics include latitude and longitude coordinates, species-level classification (based on morphological measurements and genetic SNP analysis confirming identity as Quercus robur, Quercus petraea, or hybrids), tree dimensions (height, diameter at 1.35 m, crown dimensions), crown condition (density reduction), and rooting depth.\n\nData on the surrounding site context were also collected, including depth to gleying, basal area of surrounding stands (measured at 0–20 m and 20–40 m), compound topographic index, and tree social status (e.g., dominant, codominant, suppressed).\n\nSoil characteristics were analysed to capture both physical and chemical properties. Physical properties included texture and bulk density, while chemical analyses measured organic matter content, pH, total carbon and nitrogen, mineral nitrogen (nitrate and ammonium), ‘Olsen’ extractable phosphorus, cation exchange capacity, and concentrations of exchangeable cations.\n\nThe work was supported by the grant BB/N022831/1 (‘PuRpOsE’) with additional funding from the Woodland Trust, Bartlett’s Tree Experts and The University of Reading.\n","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N022831/1"],"identifier":"9947ccc9-7396-4821-b095-c374bd857305","incomingCitationCount":0,"givenName":["L.J.","M.","M.S.J.","T.","A.","O.R.","G.A.","G.M.","N","K","R.W.","D","A.S.","I.M.","C."],"familyName":["Shaw","Rabiey","Garcia","Clarke","Broome","Corbett","Booth","Barrett","Preston","Barsoum","Schonrogge","Jackson","Ray","Dudley","Kamerling","Speed"],"fullName":["Shaw, L.J.","Rabiey, M.","Garcia, M.S.J.","Clarke, T.","Broome, A.","Corbett, L.J.","Booth, O.R.","Barrett, G.A.","Preston, G.M.","Barsoum, N.","Schonrogge, K.","Jackson, R.W.","Ray, D.","Dudley, A.S.","Kamerling, I.M.","Speed, C."],"keyword":["England","Biodiversity","Acute Oak Decline","Soil Properties","Forest Mensuration","Quercus robur","Quercus petraea","gleying"],"keywordsPlace":["England"],"keywordsTheme":["Biodiversity"],"keywordsOther":["Acute Oak Decline","Soil Properties","Forest Mensuration","Quercus robur","Quercus petraea","gleying"],"licence":"Non-Open government licence","lineage":"Selection of trees for sampling involved systematic field surveys, targeting symptomatic (stem bleeding cankers) and asymptomatic trees. \nTree and site characteristics were determined using standardized forest mensuration protocols. Soil samples (taken from 5-15 cm and 40-50 cm depths from randomly-selected positions 1.5-2.0 m away from the stem from each tree) were prepared for analysis of physical and chemical properties using standard laboratory methods (e.g., BaCl2 extractions for exchangeable cations, and the Olsen method for phosphorus). Soil samples were analysed using laboratory equipment such as a Malvern Mastersizer 3000 for particle size analysis, a FLASH CN elemental analyzer for carbon and nitrogen content, and a Perkin Elmer 3000 ICP-OES for cation analysis. A Skalar SAN++ autoanalyzer was used for phosphate, nitrate and ammonium determination.\nVariables (units) include tree dimensions (meters, centimetres), soil chemical concentrations (mg/kg), and physical properties such as texture (percentages of clay, silt, and sand). Additional variables include crown density reduction (percentage).\nComposite soil samples were prepared by pooling subsamples, and chemical analysis results are normalized to dry soil weight.\nLaboratory analyses included technical replication (e.g., three replicates for LOI, five for particle size distribution) and calibration using external standards. Blanks were analysed alongside samples for nutrient and cation extraction procedures.\nData reliability may be influenced by the sampling resolution and the inherent variability in soil properties. Some chemical concentrations were below detection limits and are entered as half the detection limit, following USEPA (2000) guidelines. Observations and samples represent a single time point, limiting temporal insights into soil and tree dynamics.\n","locations":["POLYGON((-6.452 49.864, -6.452 55.812, 1.768 55.812, 1.768 49.864, -6.452 49.864))"],"orcid":["https://orcid.org/0000-0002-4985-7078","https://orcid.org/0000-0001-8463-9087","https://orcid.org/0000-0002-7745-6351","https://orcid.org/0000-0003-0619-2085","https://orcid.org/0000-0003-1509-0179","https://orcid.org/0000-0003-3882-4438","https://orcid.org/0000-0003-0122-6493","https://orcid.org/0000-0002-2042-4105","https://orcid.org/0000-0002-8975-8728","https://orcid.org/0000-0003-3321-8631"],"organisation":["University of Reading","University of Warwick","Cabinet Office","Forest Research","University of Oxford","UK Centre for Ecology & Hydrology","University of Birmingham","Leiden University","NERC EDS Environmental Information Data Centre","University of Reading and The Crown"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9947ccc9-7396-4821-b095-c374bd857305","10.5285/9947ccc9-7396-4821-b095-c374bd857305"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Reading and The Crown"],"ror":["https://ror.org/05v62cm79","https://ror.org/01a77tt86","https://ror.org/007f5s288","https://ror.org/03wcc3744","https://ror.org/052gg0110","https://ror.org/00pggkr55","https://ror.org/03angcq70","https://ror.org/027bh9e22","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["This dataset forms the basis of the results presented in the following pre-print:\n\nLiz J. Shaw, Mojgan Rabiey, Mateo S J Garcia, Toni Clarke, Alice Broome, Luci Corbett, Oliver R. Booth, Glyn A. Barrett, Gail M. Preston, Nadia Barsoum, Karsten Schonrogge, Robert W. Jackson and Duncan Ray. The cause-effect conundrum of local-scale site and soil factors in acute oak decline (AOD), bioRxiv 2025.01.24.634765"],"title":"Soil, site and tree characteristics for acute oak decline (AOD) symptomatic and non-symptomatic oak in three UK woodlands, southern England, 2016","topic":["0/Biodiversity/"],"version":1.0,"view":["public","katwri"],"shortenedDescription":"This dataset contains information on tree, site and soil properties from three oak woodland sites in southern England: Writtle Forest, Monks Wood, and Stratfield Brake. Data were collected in 2016 to investigate the relationship between Acute Oak Decline (AOD) symptoms..."},{"publicationDate":"2019-04-23T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Rothamsted Research","Bangor University"],"authorGivenName":["T.I.","R.I.","A","M.","I.M.","P.R.","A.M.","T.H.","A.R.","D.R.","D.L.","S."],"authorFamilyName":["Goodall","Griffiths","Blaud","Abadie","Clark","Hirsch","Carswell","Misselbrook","Sánchez-Rodríguez","Chadwick","Jones","Reinsch"],"authorFullName":["Goodall, T.I.","Griffiths, R.I.","Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Carswell, A.M.","Misselbrook, T.H.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L.","Reinsch, S."],"authorOrcid":["https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0003-4649-0677"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/006jb1a24"],"catalogue":"eidc","description":"The data consist of nitrogen gene data, soil biodiversity indices and microbial community composition for three soil depths (0-15, 15-30 and 30-60 cm) from a winter wheat field experiment located in the United Kingdom and collected between April 2017 and August 2017. The sites were Rothamsted Research at North Wyke in Devon  and Bangor University at Henfaes Research Station in North Wales.\n\nAt each site measurements were taken from 15 plots, organised within a randomised complete block design where 5 plots did not receive fertilizers (controls), 5 plots received food-based digestate, and 5 plots received acidified food based digestate a nitrification inhibitor. Soil samples were taken within two weeks of digestate application and shortly before winter wheat harvest.\n\nSoil chemical parameters were: soil nitrate, ammonium, dissolved organic carbon and nitrogen, amino acids and peptides, soil organic matter content as loss-on-ignition, pH, sodium, potassium, calcium, magnesium, permanganate oxdisable carbon citric acid extractable phosphorous, Olsen-P and total carbon, nitrogen and phosphorus. Soil biological measure were: microbial biomass carbon and nitrogen. \n\nSoil samples were taken by members of staff from Centre of Ecology & Hydrology (Bangor), Bangor University, School of Environment, Natural Resources & Geography Sustainable Agricultural Sciences, and Rothamsted Research North Wyke. Measurements were carried out Rothamsted Research Harpenden and the Centre of Ecology & Hydrology (Wallingford). Soil physico-chemical parameters were measured on the same soil samples and are presented in a related dataset. https://catalogue.ceh.ac.uk/id/90df9dfa-a0c8-4ead-a13d-0a0a13cda7ab\n\nData was collected for the Newton Fund project “UK-China Virtual Joint Centre for Improved Nitrogen Agronomy”. Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC -  Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"391c0294-07f1-4856-b592-428bd44055ca","incomingCitationCount":0,"givenName":["S.","T.I.","R.I.","A","M.","I.M.","P.R.","A.M.","T.H.","A.R.","D.R.","D.L."],"familyName":["Reinsch","Goodall","Griffiths","Blaud","Abadie","Clark","Hirsch","Carswell","Misselbrook","Sánchez-Rodríguez","Chadwick","Jones"],"fullName":["Reinsch, S.","Goodall, T.I.","Griffiths, R.I.","Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Carswell, A.M.","Misselbrook, T.H.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L."],"keyword":["winter wheat","nitrogen","fertiliser","digestate","operational taxonomic unit","diversity index","bacterial community composition"],"keywordsOther":["winter wheat","nitrogen","fertiliser","digestate","operational taxonomic unit","diversity index","bacterial community composition"],"licence":"Open government licence","lineage":"Soil samples were taken by members of staff from the different sites. Samples were sent to Rothamsted Research Harpenden for DNA extractions and extracts were analysed for nitrogen genes (nifH, amoA, nirK, nirS, nosZ, ureC). Extracts were also sent to CEH Wallingford for analyses of operational taxonomic units (OTUs').\n\nSoil community DNA was extracted from 0.25 grams soil using the MoBio DNA PowerSoil DNA isolation kit (Mo Bio Laboratories, Inc. Carlsbad, CA), following manufacturer’s protocol. Extracted DNA was quantified by fluorometer Qubit® 2.0 dsDNA BR Assay Kit (Thermo Fisher Scientific) and quality checked by nanodrop (Thermo Fisher Scientific).\n\nQuantitative-Polymerase chain reaction (qPCR) protocols were followed as detailed in De Sosa et al. 2018.\n\nExtracted DNA was supplied from Rothamsted Research in Harpenden for amplicon sequencing at the facilities of the Molecular Ecology Group, Centre for Ecology & Hydrology, Wallingford. <50 μL volumes of DNA extract were supplied in 96-well plate format, these were subject to 16S Ribosomal ribonucleic acid (rRNA) amplicon sequencing as described in Kozich 2013 and Internal transcribed spacer (ITS) rRNA amplicon sequencing employing the Kozich 2013 strategy and Ihrmark 2012.\n\nAll results were entered into a Microsoft Excel spreadsheet and converted to .csv files for ingestion into the Environmental Information Data Centre.","locations":["POLYGON((-4.022 50.767, -4.022 53.241, -3.892 53.241, -3.892 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","Rothamsted Research","Bangor University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/391c0294-07f1-4856-b592-428bd44055ca","10.5285/391c0294-07f1-4856-b592-428bd44055ca"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/006jb1a24","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Kozich, J.J., Westcott, S.L., Baxter, N.T., Highlander, S. K., & Schloss, P.D. (2013). Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform. Applied and Environmental Microbiology, 79(17), 5112–5120.","de Sosa, L.L., Glanville, H.C., Marshall, M.R., Schnepf, A., Cooper, D.M., Hill, P.W., … Jones, D.L. (2018). Stoichiometric constraints on the microbial processing of carbon with soil depth along a riparian hillslope. Biology and Fertility of Soils, 54(8), 949–963."],"supplementalName":["The UK-China Virtual Joint Centre for Improved Nitrogen Agronomy (CINAG)"],"title":"Soil biological properties from a digestate experiment on winter wheat at North Wyke and Henfaes Farm, UK (2017)","version":1.0,"view":["public","danor"],"shortenedDescription":"The data consist of nitrogen gene data, soil biodiversity indices and microbial community composition for three soil depths (0-15, 15-30 and 30-60 cm) from a winter wheat field experiment located in the United Kingdom and collected between April 2017 and August 2017...."},{"publicationDate":"2023-07-05T00:00:00.000+00:00","authorAffiliation":["IPB University","Sinar Mas Agro Resources and Technology Research Institute","Universiti Putra Malaysia","Wild Asia","UK Centre for Ecology & Hydrology","University of Cambridge","University of Oxford","Nottingham University"],"authorGivenName":["D.","P.","J-P.","M.","B.","I.","J.","M.F.","A.J.","J.A.","S.H.","W.M.","V.J.","E.C."],"authorFamilyName":["Buchori","Hidayat","Caliman","Naim","Azhar","Barrock","Drewer","Harianja","Siti Zulaikah","Jones","Luke","Wan Zaki","Popkin","Reiss-Woolever","Stone","Turner"],"authorFullName":["Buchori, D.","Hidayat, P.","Caliman, J.","Naim, M.","Azhar, B.","Barrock, I.","Drewer, J.","Harianja, M.F.","Siti Zulaikah, A.J.","Jones, J.A.","Luke, S.H.","Wan Zaki, W.M.","Popkin, M.","Reiss-Woolever, V.J.","Stone, J.","Turner, E.C."],"authorOrcid":["https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0003-2715-2234"],"authorRor":["https://ror.org/05smgpd89","https://ror.org/02e91jd64","https://ror.org/00pggkr55","https://ror.org/013meh722","https://ror.org/052gg0110","https://ror.org/01ee9ar58"],"catalogue":"eidc","description":"This dataset includes results from biodiversity, social and environmental surveys of 46 oil palm smallholders and farms in Riau, Indonesia. Biodiversity data includes: pitfall trap data on arthropod abundance and higher-level order identification, sticky trap data on flying invertebrate abundance (identified to higher-level order), transect data on assassin bugs, Nephila spp. spiders and butterflies (identified to species), counts of insects visiting oil palm inflorescences if any open (identified to Elaeidobius kamerunicus and higher-level orders for other groups) and data on meal worm removal from each plot. Environmental data includes: soil temperature readings recorded over 24 hours, information on size of plot, crop type and cover, GPS location, vegetation cover, vegetation height, canopy density, epiphyte cover, soil pH, soil moisture, leaf litter depth, horizon depths, palm herbivory and palm health. Social data includes information (all anonymised) on: plot area, number of palms, sociodemographic data, plantation management practices applied, knowledge and value assigned to wildlife, and yield. Data were collected from November 2021 to June 2022.","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/T012366/1"],"identifier":"b61a12a2-d091-41af-b451-a14de4f4a3c3","incomingCitationCount":0,"givenName":["D.","P.","J-P.","M.","B.","I.","J.","M.F.","A.J.","J.A.","S.H.","W.M.","V.J.","E.C."],"familyName":["Buchori","Hidayat","Caliman","Naim","Azhar","Barrock","Drewer","Harianja","Siti Zulaikah","Jones","Luke","Wan Zaki","Popkin","Reiss-Woolever","Stone","Turner"],"fullName":["Buchori, D.","Hidayat, P.","Caliman, J.","Naim, M.","Azhar, B.","Barrock, I.","Drewer, J.","Harianja, M.F.","Siti Zulaikah, A.J.","Jones, J.A.","Luke, S.H.","Wan Zaki, W.M.","Popkin, M.","Reiss-Woolever, V.J.","Stone, J.","Turner, E.C."],"keyword":["Riau","oil palm","smallholder","social","soil","vegetation","crop production"],"keywordsOther":["Riau","oil palm","smallholder","social","soil","vegetation","crop production"],"licence":"Open government licence","lineage":"Biodiversity, environmental and social data were collected in a series of field campaigns, led by researchers from Institut Pertanian Bogor (IPB) University, supported by researchers and staff from Sinar Mas Agro Resources and Technology Research Institute.\n\nBiodiversity data collection included standard transect walks of 100m to record abundance and activity of butterflies, as well as numbers of Assassin bugs and Nephila spiders within a 5m x 5m box in front of the recorder. At four points along the transect, separated by 20m, we also recorded ground invertebrate abundance, understory flying invertebrate abundance, and predation. Plastic cups, filled with 70% alcohol and a few drops of detergent, covered with a plate to protect from rain, were used as pitfall traps to sample ground invertebrates. Samples were stored in 70% alcohol. Clear plastic sheets smeared with glue were used as sticky traps, suspended 40cm above the ground and facing south, to collect understory invertebrates. Both traps were collected after 24hours. Sticky traps were photographed to allow later recording of invertebrate abundance. Cards with 6 dead meal worms attached and hung on palm trunks next to sample points were used to assess predation, by recording removal over 24 hours. Finally, the plots were thoroughly searched for any open male or female oil palm inflorescences. These were scored for % openness and observed for 10 minutes, during which time the highest number of insects in major groups were recorded. This survey was repeated 24 hours later.\n\nEnvironmental data collection methods included visual inspection of plots to record cover of different crop types, and using handheld GPS units to record plantation boundaries and size of plantations. At the same four sample points used to set pitfalls and sticky traps, we also made direct measurements of vegetation, palm and soil characteristics. These included field readings of canopy openness using a convex spherical densiometer, direct measures of vegetation height and cover (into categories by eye within a 3m x3m area), and field measures of soil pH and moisture using a Suplong probe. We also scored height, health, % epiphyte cover on the trunk, and level of herbivory by eye on the closest palm to each point. We also dug small soil pits to assess leaf litter depth and then used a standard 10cm deep and 5cm diameter tube to collect soil samples. We also conducted a Visual Evaluation of Soil Structure (VESS) survey to measure depth of soil horizons and associated characteristics, following standard methods.\n\nSocial data were collected through a mixture of telephone and face to face interviews with smallholders, at a time convenient to the smallholders. Some telephone interviews were necessary owing to the impacts of COVID. Ethical permission for interviews were gained from the University of Cambridge Department of Psychology ethics board before work took place, no information was withheld from participants and full written consent was obtained in advance.\n\nOn return to the lab, collected pitfall trap insects were stored in fresh alcohol and identified to order-level. Soil samples were weighed wet and then dried to a constant weight, allowing water content and soil compaction to be calculated. Sticky trap photos had insects counted and identified to order-level. \n\nData were entered digitally by field teams and returned to the University of Cambridge for quality and error checking, and to ensure a standard format.\n","locations":["POLYGON((99.272 -1.614, 99.272 2.669, 104.238 2.669, 104.238 -1.614, 99.272 -1.614))"],"orcid":["https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0003-2715-2234"],"organisation":["IPB University","Sinar Mas Agro Resources and Technology Research Institute","Universiti Putra Malaysia","Wild Asia","UK Centre for Ecology & Hydrology","University of Cambridge","University of Oxford","Nottingham University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b61a12a2-d091-41af-b451-a14de4f4a3c3","10.5285/b61a12a2-d091-41af-b451-a14de4f4a3c3"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/05smgpd89","https://ror.org/02e91jd64","https://ror.org/00pggkr55","https://ror.org/013meh722","https://ror.org/052gg0110","https://ror.org/01ee9ar58","https://ror.org/04xw4m193"],"state":"published","title":"Socioecological data from smallholder oil palm plantations in Riau, Sumatra, Indonesia, 2021-2022","version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset includes results from biodiversity, social and environmental surveys of 46 oil palm smallholders and farms in Riau, Indonesia. Biodiversity data includes: pitfall trap data on arthropod abundance and higher-level order identification, sticky trap data on..."},{"publicationDate":"2019-04-25T00:00:00.000+00:00","authorAffiliation":["Bangor University","Rothamsted Research","Centre for Ecology & Hydrology"],"authorGivenName":["A.R.","A.M.","J.M.","D.R.","D.L.","T.H.","K.S.","S."],"authorFamilyName":["Sánchez-Rodríguez","Carswell","Cotton","Chadwick","Jones","Misselbrook","Saunders","Reinsch"],"authorFullName":["Sánchez-Rodríguez, A.R.","Carswell, A.M.","Cotton, J.M.","Chadwick, D.R.","Jones, D.L.","Misselbrook, T.H.","Saunders, K.S.","Reinsch, S."],"authorOrcid":["https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0003-4649-0677"],"authorRor":["https://ror.org/006jb1a24","https://ror.org/0347fy350","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"The data contains nitrogen (N) offtake, N emissions (ammonia and nitrous oxide), soil parameters (pH, EC, NH4+, NO3−), biomass and grain production from a winter wheat field experiment located at Bangor University (Henfaes Research Station in North Wales) and Rothamsted Research (North Wyke (NW) in Devon). Data were collected between  April 2017 and August 2017. Measurements and soil and plant samples were taken from 45 plots in a randomized complete block design. Sixteen extra mini-plots at the prevailing wind (south westerly) edge of the experiment site were used at NW for NH3 volatilization measurements. The treatments were control (C, without N application), food based digestate (D), food based digestate + the nitrification inhibitor 3,4-dimethylpyrazole (DMPP; D+NI), acidified food based digestate (AD), acidified food based digestate + the nitrification inhibitor 3,4-dimethylpyrazole (DMPP; AD+NI). Four rates of ammonium nitrate (NH4NO3; 75, 150, 225 and 300 kg N ha−1)  were applied to compare yields and fertilizer replacement rate of the digestate treatments (targeted at 190 kg N  ha−1). Soil pH, soil electrical conductivity (EC), soil NH4+ and soil NO3−, NH3 volatilization, N2O emissions were measured periodically for C, D, D+NI, AD and AD+NI and nitrogen concentration in grain and straw, grain yield and plant biomass for all treatments.\n\nNitrogen offtake, losses and fluxes were used to determine the N use efficiency (NUE) and fertilizer replacement rate of the digestate treatments.\n\nMeasurements were undertaken by members of staff from Bangor University, School of Environment, Natural Resources & Geography and Rothamsted Research, Sustainable Agricultural Sciences – North Wyke.\n\nData was collected for the Newton Fund project “UK-China Virtual Joint Centre for Improved Nitrogen Agronomy”. Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC -  Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"836dfb2e-bc6f-47d2-b924-8261be671391","incomingCitationCount":0,"givenName":["S.","A.R.","A.M.","J.M.","D.R.","D.L.","T.H.","K.S."],"familyName":["Reinsch","Sánchez-Rodríguez","Carswell","Cotton","Chadwick","Jones","Misselbrook","Saunders"],"fullName":["Reinsch, S.","Sánchez-Rodríguez, A.R.","Carswell, A.M.","Cotton, J.M.","Chadwick, D.R.","Jones, D.L.","Misselbrook, T.H.","Saunders, K.S."],"keyword":["CINAg","CENTRE FOR IMPROVED NITROGEN AGRONOMY","Land use","Soil","Agriculture","nitrification inhibitor","digestate","Nitrogen use efficiency (NUE)","nitrogen","fertiliser","nitrification","winter wheat"],"keywordsProject":["CINAg","CENTRE FOR IMPROVED NITROGEN AGRONOMY"],"keywordsTheme":["Land use","Soil","Agriculture"],"keywordsOther":["nitrification inhibitor","digestate","Nitrogen use efficiency (NUE)","nitrogen","fertiliser","nitrification","winter wheat"],"licence":"Open government licence","lineage":"Cumulative ammonia (NH3) emissions were measured using a wind tunnel technique (with 0.02 M H3PO4 acid traps) at a daily resolution for seven days following digestate application, except the first day where NH3 volatilization was measured twice at Henfaes Farm and three times at North Wyke.\n\nNitrous oxide emissions were measured using a combination of static manual and static automatic (combined with an Isotopic  Nitrous Oxide (N2O) Analyser, Los Gatos Research Inc. San Jose, CA, USA) chambers at Henfaes Farm, and only static manual chambers at North Wyke. Using the manual static chambers, the resolution of Nitrous Oxide (N2O) measurements following Nitrogen (N) fertiliser application was 3 x weekly for weeks 1 and 2, 2 x weekly for weeks 3 and 4, and 1 x weekly thereafter. Using the automatic static chambers, the resolution of N2O measurements following N fertiliser application was approximately every six hours.\n\nSamples for soil ammonium (NH4+) and nitrate (NO3−) analyses were collected at the same temporal resolution as the N2O sampling using manual static chambers.\n\nWinter wheat yield and biomass measurements were done the day of harvest (fresh weight) and subsamples were used to determine grass and grain moisture after 24 hours at 80 degrees Celsius.\n\nAll results were entered into Excel spreadsheets providing individual datasets for each set of N parameters. Data were exported from Excel as .csv files for ingestion into the EIDC.","locations":["POLYGON((-4.022 50.767, -4.022 53.241, -3.892 53.241, -3.892 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0002-4594-3606"],"organisation":["UK Centre for Ecology & Hydrology","Bangor University","Rothamsted Research","Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/836dfb2e-bc6f-47d2-b924-8261be671391","10.5285/836dfb2e-bc6f-47d2-b924-8261be671391"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/0347fy350","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Project website"],"supplementalName":["THE UK-CHINA VIRTUAL JOINT CENTRE FOR IMPROVED NITROGEN AGRONOMY (CINAG)"],"title":"Greenhouse gas emissions, nitrogen use efficiency and biomass from digestate experiments on winter wheat at North Wyke and Henfaes, UK (2017)","topic":["0/Land use/","0/Soil/","0/Agriculture/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"The data contains nitrogen (N) offtake, N emissions (ammonia and nitrous oxide), soil parameters (pH, EC, NH4+, NO3−), biomass and grain production from a winter wheat field experiment located at Bangor University (Henfaes Research Station in North Wales) and Rothamsted..."},{"publicationDate":"2024-06-05T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["L.R.","M.","C.M.","A.","B.A.","F."],"authorFamilyName":["Norton","Wagner","Wood","Pinder","Brentegani","Hunt","Dodd","Seaton"],"authorFullName":["Norton, L.R.","Wagner, M.","Wood, C.M.","Pinder, A.","Brentegani, M.","Hunt, A.","Dodd, B.A.","Seaton, F."],"authorOrcid":["https://orcid.org/0000-0002-1622-0281","https://orcid.org/0000-0002-0394-2998","https://orcid.org/0000-0002-9494-6272","https://orcid.org/0000-0002-2022-7451"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This set of data includes records of vegetation species and characteristics, soil quality metrics and aspects of management relating to a single field on each sampled farm. Data were collected in 2019, from farms across Great Britain belonging to the Pasture Fed Livestock Association (PFLA).\nThe data were collected by the UK Centre of Ecology & Hydrology, during a project funded by the BBSRC, seeking to evidence the impacts of pasture fed livestock approaches on grassland parameters, in particular, sward composition and associated soil qualities.\n","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/R005710/1"],"identifier":"e46dc740-2dc7-4f9f-b2b6-24748d86759a","incomingCitationCount":0,"givenName":["C.M.","L.R.","M.","A.","B.A.","F."],"familyName":["Wood","Norton","Wagner","Pinder","Brentegani","Hunt","Dodd","Seaton"],"fullName":["Wood, C.M.","Norton, L.R.","Wagner, M.","Pinder, A.","Brentegani, M.","Hunt, A.","Dodd, B.A.","Seaton, F."],"keyword":["Agriculture","Biodiversity","Environmental survey","Soil","farm"],"keywordsTheme":["Agriculture","Biodiversity","Environmental survey","Soil"],"keywordsOther":["farm"],"licence":"Open government licence","lineage":"Data were collected by trained members of UKCEH staff, according to standardised protocols in the summer of 2019. Vegetation and management records were collected on electronic recording devices. Soil samples were analysed at UKAS Accredited labs at UKCEH Lancaster. All data were transferred to secure databases at UKCEH Lancaster once collected.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-0394-2998","https://orcid.org/0000-0002-1622-0281","https://orcid.org/0000-0002-9494-6272","https://orcid.org/0000-0002-2022-7451"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e46dc740-2dc7-4f9f-b2b6-24748d86759a","10.5285/e46dc740-2dc7-4f9f-b2b6-24748d86759a"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Soil metrics, vegetation species and biomass data, and field management information from pasture fed livestock farms across Great Britain, 2019","topic":["0/Agriculture/","0/Biodiversity/","0/Environmental survey/","0/Soil/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"This set of data includes records of vegetation species and characteristics, soil quality metrics and aspects of management relating to a single field on each sampled farm. Data were collected in 2019, from farms across Great Britain belonging to the Pasture Fed Livestock..."},{"publicationDate":"2022-08-17T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Phenotypes for Scots pine mother trees and their cones/seed from 21 populations across Scotland in 2007. The seed was used to establish a long-term multisite common garden trial at three nurseries/field sites","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"grant":["NE/K012177/1","BB/L012243/1"],"identifier":"8a86cb01-46d5-4620-a2be-c15c7616fbe8","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S.","Annika"],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Adaptive trait variation","Scots pine","Pinus sylvestris","Caledonian pinewood","phenotype","Growth","Mother tree","Seed","Cone"],"keywordsOther":["Adaptive trait variation","Scots pine","Pinus sylvestris","Caledonian pinewood","phenotype","Growth","Mother tree","Seed","Cone"],"licence":"Open government licence","lineage":"Twenty-one Caledonian pinewood populations were visited in 2007 and cones collected from 10 trees (known as ‘mother trees’) per population. Phenotypes (including height, DBH, soil depth, competition and altitude) were recorded for each mother tree. The size and weight of cones (10 per mother tree) and seeds (all seeds within each cone: total number of viable seeds, percentage viability and weight of viable seeds) were also recorded.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8a86cb01-46d5-4620-a2be-c15c7616fbe8","10.5285/8a86cb01-46d5-4620-a2be-c15c7616fbe8"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: mother tree, cone and seed phenotypes, 2007 v2","version":1.0,"view":["public","clwe"],"shortenedDescription":"Phenotypes for Scots pine mother trees and their cones/seed from 21 populations across Scotland in 2007. The seed was used to establish a long-term multisite common garden trial at three nurseries/field sites"},{"publicationDate":"2019-04-16T00:00:00.000+00:00","authorAffiliation":["Rothamsted Research","Bangor University","Unaffiliated","Centre for Ecology & Hydrology"],"authorGivenName":["A.M.","R.","A.R.","J.M.","D.R.","D.L.","T.H.","K.S.","J.","S."],"authorFamilyName":["Carswell","Shaw","Sánchez-Rodríguez","Cotton","Chadwick","Jones","Misselbrook","Saunders","Hunt","Reinsch"],"authorFullName":["Carswell, A.M.","Shaw, R.","Sánchez-Rodríguez, A.R.","Cotton, J.M.","Chadwick, D.R.","Jones, D.L.","Misselbrook, T.H.","Saunders, K.S.","Hunt, J.","Reinsch, S."],"authorOrcid":["https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0003-4649-0677"],"authorRor":["https://ror.org/051h34p92","https://ror.org/006jb1a24","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"The data consists of nitrogen (N) offtake, N emissions and soil N parameters, and herbage quality parameters from a three-cut silage plot trial located at two grassland sites within the UK collected between April and October 2016. The sites were Rothamsted Research at North Wyke in Devon and Bangor University at Henfaes Research Station in North Wales. At each site measurements were taken from 16 plots, organised within a randomised complete block design. Fertiliser was applied three times and three cuts were performed, all parameters measured were following a fertiliser application. Nitrogen parameters measured were crude protein (CP) of herbage, ammonia (NH3) emissions, nitrous oxide (N2O) emissions, and soil ammonium (NH4) and nitrate (NO3). Herbage quality parameters measured were dry matter, acid-digestible fibre (ADF), ash, CP, metabolizable energy (ME), and non-digestible fibre (NDF) and digestibility (D) was calculated. \n\nNitrogen offtake, losses and fluxes were measured to determine the N use efficiency and the economic viability of different N fertilisers.\nMeasurements were undertaken by members of staff from Bangor University, School of Environment, Natural Resources & Geography and Rothamsted Research, Sustainable Agricultural Sciences – North Wyke.\n\nData was collected for the Newton Fund project \"UK-China Virtual Joint Centre for Improved Nitrogen Agronomy\". Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC -  Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"4c7d4b3c-88f7-43ab-a50f-b6804474e568","incomingCitationCount":0,"givenName":["Sabine","A.M.","R.","A.R.","J.M.","D.R.","D.L.","T.H.","K.S.","J.","S."],"familyName":["Reinsch","Carswell","Shaw","Sánchez-Rodríguez","Cotton","Chadwick","Jones","Misselbrook","Saunders","Hunt"],"fullName":["Reinsch, S.","Carswell, A.M.","Shaw, R.","Sánchez-Rodríguez, A.R.","Cotton, J.M.","Chadwick, D.R.","Jones, D.L.","Misselbrook, T.H.","Saunders, K.S.","Hunt, J."],"keyword":["CINAg","Centre for Improved Nitrogen Agronomy","Agriculture","Climate and climate change","Pollution","Urease inhibitor","Nitrogen use efficiency (NUE)","GHG","fertiliser","nitrogen","grassland","greenhouse gas"],"keywordsProject":["CINAg","Centre for Improved Nitrogen Agronomy"],"keywordsTheme":["Agriculture","Climate and climate change","Pollution"],"keywordsOther":["Urease inhibitor","Nitrogen use efficiency (NUE)","GHG","fertiliser","nitrogen","grassland","greenhouse gas"],"licence":"Open government licence","lineage":"At each site measurements were taken from sixteen plots, organised within a randomised complete block design. Four plots did not receive fertilizers (controls), four plots received urea only, four plots received urea and urea-inhibitors, and 4 plots received Ammonium-nitrate (Nitram).\n\nCumulative NH3 emissions were measured using a wind tunnel technique, at a daily resolution for 21 days following each N fertiliser application. \nNitrous oxide emissions were measured using a combination of static manual and static automatic (combined with an Isotopic N2O Analyser, Los Gatos Research Inc. San Jose, CA, USA) chambers. Using the manual static chambers, the resolution of N2O measurements following N fertiliser application was 3 x weekly for weeks 1 and 2, 2 x weekly for weeks 3 and 4, and 1 x weekly thereafter. Using the automatic static chambers, the resolution of N2O measurements following N fertiliser application was approximately every six hours.\n\nSamples for soil NH4 and NO3 analyses were collected at the same temporal resolution as the N2O sampling using manual static chambers.\nHerbage yield measurements were carried out on the day of cutting, and samples of the fresh-cut herbage were couriered within 24 h to external contractors (Trouw Nutrition GB, Blenheim House, Ashbourne, UK and Sciantec Analytical Laboratories, Stockbridge Technology Centre, York, UK) for quality analyses of (CP, ME, NDF, ADF and DM). Digestibility was calculated.\n\nAll results were entered into Excel spreadsheets providing individual datasets for each set of N parameters. Data were exported from Excel as .csv files for ingestion into the EIDC.","locations":["POLYGON((-4.022 50.767, -4.022 53.241, -3.892 53.241, -3.892 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0003-4649-0677"],"organisation":["UK Centre for Ecology & Hydrology","Rothamsted Research","Bangor University","Unaffiliated","Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/4c7d4b3c-88f7-43ab-a50f-b6804474e568","10.5285/4c7d4b3c-88f7-43ab-a50f-b6804474e568"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/051h34p92","https://ror.org/006jb1a24","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Project web site"],"supplementalName":["THE UK-CHINA VIRTUAL JOINT CENTRE FOR IMPROVED NITROGEN AGRONOMY (CINAG)"],"title":"Greenhouse gas emissions, nitrogen use efficiency and biomass from inorganic fertiliser additions to grassland at North Wyke and Henfaes, UK (2016)","topic":["0/Agriculture/","0/Climate and climate change/","0/Pollution/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"The data consists of nitrogen (N) offtake, N emissions and soil N parameters, and herbage quality parameters from a three-cut silage plot trial located at two grassland sites within the UK collected between April and October 2016. The sites were Rothamsted Research..."},{"publicationDate":"2024-10-09T00:00:00.000+00:00","authorAffiliation":["Wild Asia","Universiti Putra Malaysia","IPB University","Sinar Mas Agro Resources and Technology Research Institute","UK Centre for Ecology & Hydrology","University of Cambridge","University of Oxford","University of  Nottingham"],"authorGivenName":["I.","A.J.","B. ","D.","J.-P.","J.","M.F.","P.","J.A.","S.H.","W.M.","M.","V.J.","Edgar C."],"authorFamilyName":["Barrock","Siti Zulaikah","Azhar","Bukhari","Caliman","Drewer","Harianja","Hidayat","Jones","Luke","Wan Zaki","Naim","Popkin","Reiss-Woolever","Stone","Turner"],"authorFullName":["Barrock, I.","Siti Zulaikah, A.J.","Azhar, B.","Bukhari, D.","Caliman, J.-.","Drewer, J.","Harianja, M.F.","Hidayat, P.","Jones, J.A.","Luke, S.H.","Wan Zaki, W.M.","Naim, M.","Popkin, M.","Reiss-Woolever, V.J.","Stone, J.","Turner, E.C."],"authorOrcid":["https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0003-2715-2234"],"authorRor":["https://ror.org/02e91jd64","https://ror.org/05smgpd89","https://ror.org/00pggkr55","https://ror.org/013meh722","https://ror.org/052gg0110","https://ror.org/01ee9ar58"],"catalogue":"eidc","description":"This dataset includes results from biodiversity, social and environmental surveys of 49 oil palm smallholders and farms in Perak, Malaysia. Biodiversity data includes sticky trap data on flying invertebrate abundance (identified to higher-level order), transect data on assassin bugs, Nephila spp. spiders and butterflies (identified to species), and data on mealworm removal from each plot. Environmental data includes soil temperature readings recorded over 24 hours, information on the size of the plot, crop type and cover, GPS location, vegetation cover, vegetation height, canopy density, epiphyte cover, soil pH, soil moisture, leaf litter depth, horizon depths, palm herbivory and palm health. Social data includes information (all anonymised) on plot area, number of palms, sociodemographic data, plantation management practices applied, knowledge and value assigned to wildlife, and yield. Data were collected from December 2021 to July 2022","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"grant":["BB/T012366/1"],"identifier":"189164db-fe83-4b3f-b572-2fe99faba2d1","incomingCitationCount":0,"givenName":["I.","A.J.","B. ","D.","J.-P.","J.","M.F.","P.","J.A.","S.H.","W.M.","M.","V.J.","Edgar C."],"familyName":["Barrock","Siti Zulaikah","Azhar","Bukhari","Caliman","Drewer","Harianja","Hidayat","Jones","Luke","Wan Zaki","Naim","Popkin","Reiss-Woolever","Stone","Turner"],"fullName":["Barrock, I.","Siti Zulaikah, A.J.","Azhar, B.","Bukhari, D.","Caliman, J.-.","Drewer, J.","Harianja, M.F.","Hidayat, P.","Jones, J.A.","Luke, S.H.","Wan Zaki, W.M.","Naim, M.","Popkin, M.","Reiss-Woolever, V.J.","Stone, J.","Turner, E.C."],"keyword":["Perak","Environmental survey","Soil","smallholder","vegetation","crop","social","oil palm"],"keywordsPlace":["Perak"],"keywordsTheme":["Environmental survey","Soil"],"keywordsOther":["smallholder","vegetation","crop","social","oil palm"],"licence":"Open government licence","lineage":"Biodiversity, environmental and social data were collected in a series of field campaigns, led by researchers from Wild Asia.\n\nBiodiversity data collection included standard transect walks of 100 m to record the abundance and activity of butterflies, as well as numbers of Assassin bugs and Nephila spiders within a 5 m x 5 m box in front of the recorder. At four points along the transect, separated by 20 m, we also recorded understory flying invertebrate abundance and predation. Clear plastic sheets smeared with glue were used as sticky traps, suspended 40 cm above the ground and facing south, to collect understory invertebrates. Sticky traps were collected after 24 hours. Sticky traps were photographed to allow later recording of invertebrate abundance. Cards with 6 dead meal worms attached and hung on palm trunks next to sample points were used to assess predation, by recording removal over 24 hours.\n\nEnvironmental data collection methods included visual inspection of plots to record the cover of different crop types and using handheld GPS units to record plantation boundaries and the size of plantations. At the same four sample points used to set pitfalls and sticky traps, we also made direct measurements of vegetation, palm and soil characteristics. These included field readings of canopy openness using a convex spherical densiometer, direct measures of vegetation height and cover (into categories by eye within a 3 m x 3 m area), and field measures of soil pH and moisture using a Suplong probe. We also scored height, health, % epiphyte cover on the trunk, and level of herbivory by eye on the closest palm to each point. We also dug small soil pits to assess leaf litter depth and then used a standard 10 cm deep and 5 cm diameter tube to collect soil samples. We also conducted a Visual Evaluation of Soil Structure (VESS) survey to measure the depth of soil horizons and associated characteristics, following standard methods.\n\nSocial data were collected through a mixture of telephone and face-to-face interviews with smallholders, at a time convenient to the smallholders. Some telephone interviews were necessary owing to the impacts of COVID. Ethical permission for interviews was gained from the University of Cambridge Department of Psychology ethics board before work took place, no information was withheld from participants and full written consent was obtained in advance.\n\nOn return to the lab, soil samples were weighed wet and then dried to a constant weight, allowing water content and soil compaction to be calculated. Sticky trap photos had insects counted and identified to order-level. \nData were entered digitally by field teams and returned to the University of Cambridge for quality and error checking, and to ensure a standard format.","locations":["POLYGON((100.568 5.159, 100.568 5.28, 100.788 5.28, 100.788 5.159, 100.568 5.159))"],"orcid":["https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0003-2715-2234"],"organisation":["Wild Asia","Universiti Putra Malaysia","IPB University","Sinar Mas Agro Resources and Technology Research Institute","UK Centre for Ecology & Hydrology","University of Cambridge","University of Oxford","University of  Nottingham","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/189164db-fe83-4b3f-b572-2fe99faba2d1","10.5285/189164db-fe83-4b3f-b572-2fe99faba2d1"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/02e91jd64","https://ror.org/05smgpd89","https://ror.org/00pggkr55","https://ror.org/013meh722","https://ror.org/052gg0110","https://ror.org/01ee9ar58","https://ror.org/04xw4m193"],"state":"published","title":"Socioecological data from smallholder oil palm plantations in Perak, Peninsular Malaysia, 2021-2022","topic":["0/Environmental survey/","0/Soil/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset includes results from biodiversity, social and environmental surveys of 49 oil palm smallholders and farms in Perak, Malaysia. Biodiversity data includes sticky trap data on flying invertebrate abundance (identified to higher-level order), transect data..."},{"publicationDate":"2024-10-15T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J. K.","J. A.","J. E.","G. R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744"],"catalogue":"eidc","description":"This dataset contains daily temperature and temperature variance measurements recorded at three nurseries in Scotland between 2007 and 2012. Each nursery contained Scots pine trees grown using seed collected from 21 native Caledonian pinewood provenances, with 8 seedlings from each of 10 families per provenance (total 1680 trees per nursery) included.\n\nThis dataset was created as part of a multi-site long term garden experimental trial investigating the effect of nursery environment on Scots pine growth and development, and is part of the newLEAF and PROTREE projects. \n\n\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government","Department for Environment Food and Rural Affairs","Economic and Social Research Council"],"grant":["NE/V019813/1","BB/L012243/1"],"identifier":"81841d93-41e2-47a7-b15a-92d1e1cf07f7","incomingCitationCount":0,"givenName":["A.","J. K.","J. A.","J. E.","G. R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Environmental survey","Pinus sylvestris","Scots pine","pine forest","Caledonian pinewood","Adaptive trait variation","Common garden experiment","growth","temperature","variance","tree nursery"],"keywordsTheme":["Environmental survey"],"keywordsOther":["Pinus sylvestris","Scots pine","pine forest","Caledonian pinewood","Adaptive trait variation","Common garden experiment","growth","temperature","variance","tree nursery"],"licence":"Open government licence","lineage":"Temperature was automatically recorded hourly using a data logger in each location from 2007 to 2012. Daily maximum, minimum and average temperature and temperature variances were calculated from the hourly data and are presented here.  Where more than one hourly record was missing within a 24 hour period, no temperature or temperature variances were calculated for this day and the day's record is omitted from this dataset","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre","The James Hutton Institute"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/81841d93-41e2-47a7-b15a-92d1e1cf07f7","10.5285/81841d93-41e2-47a7-b15a-92d1e1cf07f7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: temperatures and temperature variances for tree nurseries, 2007-2012","topic":["0/Environmental survey/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"This dataset contains daily temperature and temperature variance measurements recorded at three nurseries in Scotland between 2007 and 2012. Each nursery contained Scots pine trees grown using seed collected from 21 native Caledonian pinewood provenances, with 8 seedlings..."},{"publicationDate":"2022-04-29T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government"],"grant":["NE/K012177/1","BB/L012243/1"],"identifier":"f463bc5c-bb79-4967-a8dc-f662f57f7020","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Phenology","Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth"],"keywordsTheme":["Phenology"],"keywordsOther":["Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth"],"licence":"Open government licence","lineage":"A multi-site field trial was established at three sites in Scotland in 2012 using five year old Scots pine trees. Each site contains 8 families from each of 21 native Caledonian pinewood provenances. Two of the sites (FE and FS) have four randomised blocks and the other (FW) has three randomised blocks.\nTree height and basal stem diameter were measured at the end of each growing season from 2013 to 2020 for trees growing at two of the field sites (FE and FW) and in 2020 for trees growing at the third (FS). \nPhenology assessments were performed in spring at each site from 2015 to 2019 (the survey was not completed in 2020 due to the COVID-19 pandemic).\n","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","The James Hutton Institute","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f463bc5c-bb79-4967-a8dc-f662f57f7020","10.5285/f463bc5c-bb79-4967-a8dc-f662f57f7020"],"resourceStatus":"Superseded","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: field phenotypes, 2013-2020","topic":["0/Phenology/"],"version":1.0,"view":["public","matnic"],"shortenedDescription":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020."},{"publicationDate":"2019-04-26T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Unaffiliated","Bangor University","Rothamsted Research"],"authorGivenName":["S.","A.M.","N.J.","I.","A.R.","G.","H.T.","D.R.","J.M.","H.J.","R.","A.","D.L.","P.O.","A.J.","M.R.","T.H.","M.","M.G.","K.S.","U.M.","B.","N.","B.A."],"authorFamilyName":["Reinsch","Carswell","Cowan","Lebron","Sánchez-Rodríguez","Barrett","Carter","Chadwick","Cotton","Guyatt","Harvey","Hunt","Jones","Keenan","Lawlor","Marshall","Misselbrook","Patel","Pereira","Saunders","Shaw","Skiba","Tanna","Thompson","Emmett"],"authorFullName":["Reinsch, S.","Carswell, A.M.","Cowan, N.J.","Lebron, I.","Sánchez-Rodríguez, A.R.","Barrett, G.","Carter, H.T.","Chadwick, D.R.","Cotton, J.M.","Guyatt, H.J.","Harvey, R.","Hunt, A.","Jones, D.L.","Keenan, P.O.","Lawlor, A.J.","Marshall, M.R.","Misselbrook, T.H.","Patel, M.","Pereira, M.G.","Saunders, K.S.","Shaw, R.","Skiba, U.M.","Tanna, B.","Thompson, N.","Emmett, B.A."],"authorOrcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0001-8610-9717","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0003-2869-0616","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8659-6092","https://orcid.org/0000-0002-2713-4389"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/0347fy350"],"catalogue":"eidc","description":"The data consist of soil physicochemical and biological data for three soil depths (0-15, 15-30 and 30-60 cm) from a three-cut silage plot trial located at three grassland sites within the UK collected between April 2016 and October 2016. The sites were Rothamsted Research at North Wyke in Devon, Bangor University at Henfaes Research Station in North Wales, and Easter Bush in Scotland.\n\nAt each site measurements were taken from sixteen plots, organised within a randomised complete block design: four (control) plots did not receive fertilizer, four plots received urea only,  four plots received urea and urea-inhibitors, and four plots received ammonium-nitrate (Nitram). Fertiliser was applied three times and three cuts were performed. All parameters were measured following fertiliser application. Samples were taken before fertilizer additions at peak growth and before the last silage cut.\n\nSoil physical parameters were: aggregate size distribution, aggregate stability, texture (sand/silt/clay) and soil moisture. Soil chemical parameters were: soil nitrate and ammonium, dissolved organic carbon and nitrogen, amino acids and peptides, soil organic matter content as loss-on-ignition, pH, sodium, potassium, calcium, magnesium, permanganate oxdisable carbon, citric acid extractable phosphorous, Olsen-P and total carbon, nitrogen and phosphorus. Soil biological measures were: microbial biomass, carbon and nitrogen. \n\nMicrobial community composition and nitrogen genes were measured on the same soil samples and are presented in a separate dataset (https://doi.org/10.5285/59f81d41-a789-4c5c-8ab8-36baa7ac2c55)\n\nMeasurements were undertaken by members of staff from the Centre of Ecology & Hydrology (Bangor, Edinburgh, Lancaster, Wallingford), Bangor University, School of Environment, Natural Resources & Geography and Rothamsted Research, Sustainable Agricultural Sciences, North Wyke.\n\nData was collected for the Newton Fund project \"UK-China Virtual Joint Centre for Improved Nitrogen Agronomy\". Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC -  Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"7a87dde4-b54e-49b0-8751-1d59e8aebb90","incomingCitationCount":0,"givenName":["S.","A.M.","N.J.","I.","A.R.","G.","H.T.","D.R.","J.M.","H.J.","R.","A.","D.L.","P.O.","A.J.","M.R.","T.H.","M.","M.G.","K.S.","U.M.","B.","N.","B.A."],"familyName":["Reinsch","Carswell","Cowan","Lebron","Sánchez-Rodríguez","Barrett","Carter","Chadwick","Cotton","Guyatt","Harvey","Hunt","Jones","Keenan","Lawlor","Marshall","Misselbrook","Patel","Pereira","Saunders","Shaw","Skiba","Tanna","Thompson","Emmett"],"fullName":["Reinsch, S.","Carswell, A.M.","Cowan, N.J.","Lebron, I.","Sánchez-Rodríguez, A.R.","Barrett, G.","Carter, H.T.","Chadwick, D.R.","Cotton, J.M.","Guyatt, H.J.","Harvey, R.","Hunt, A.","Jones, D.L.","Keenan, P.O.","Lawlor, A.J.","Marshall, M.R.","Misselbrook, T.H.","Patel, M.","Pereira, M.G.","Saunders, K.S.","Shaw, R.","Skiba, U.M.","Tanna, B.","Thompson, N.","Emmett, B.A."],"keyword":["CENTRE FOR IMPROVED NITROGEN AGRONOMY (CINAG)","Soil","Grassland","grassland","fertiliser","nitrogen","Urease inhibitor","soil"],"keywordsProject":["CENTRE FOR IMPROVED NITROGEN AGRONOMY (CINAG)"],"keywordsTheme":["Soil"],"keywordsOther":["Grassland","grassland","fertiliser","nitrogen","Urease inhibitor","soil"],"licence":"Open government licence","lineage":"Soil samples were taken by members of the North Wyke, Easter Bush and Henfaes farm sites. At North Wyke and Henfaes farm, staff from CEH Bangor helped taking the samples. Two sets of soil cores were taken. One core was sent in cooling boxes on ice to CEH Bangor for measuring soil physicochemical properties. The second set was send to Rothamsted Research Harpenden for the analysis of nitrogen genes and microbial community composition (related dataset). The topsoil 0-15 cm were taken with the same type of corer across the sites, samples below 15 cm soil depth were sampled with corers available at the sites. Samples were wet sieved to 5 mm by staff from Bangor University and CEH Bangor. Subsamples of these were analysed for physicochemical and biological parameters.\n\nNitrate (NO3‒), Ammonium (NH4+) ,Dissolved Organic Carbon (DOC), Dissolved Organic Nitrogen (DON), amino acids, peptides and proteins: extraction with 0.5 M potassium sulphate (K2SO4), 5 g soil and 25 ml extractant, after sieving through 5 mm. The supernatant was stored at −20 degrees Celsius until analyses. (Bangor University)\n\nTotal dissolved organic carbon (DOC) and total dissolved N (TDN) were measured using a Multi N/C 2100/2100 analyser (AnalytikJena AG, Jena, Germany). Dissolved organic N (DON) was calculated by subtracting NH4+ and NO3− from the TDN value. (Bangor University)\n\nAmmonium in the supernatant was determined colorimetrically using the salicylate method of Mulvaney (1996) and NO3− following the salicylate method of Miranda et al. (2001) in an Epoch® microplate spectrophotometer (Bio Tek Instruments Inc., Winooski, VT). (Bangor University)\n\nMicrobial biomass carbon and nitrogen were calculated in a similar way than DOC and DON but the 5 grams of soil were kept for 7 days in a desiccator with chloroform (to kill the microorganisms). The difference between DOC, DON after these 7 days (and after extraction as explained before) and the initial values (calculated in the previous paragraph) between 0.45 for microbial C and 0.54 for microbial N were microbial C and microbial N, respectively. (Bangor University)\n\nAmino acids and peptides were measured using a Cary Eclipse Fluorescence Spectrophotometer with a ProStar Solvent Delivery Module (Varian, USA). (Bangor University)\nTexture. Particle size distribution was measured using a Beckman-Coulter LS 13320 laser diffraction particle size analyser.  We manually quarter 0.5 g subsample from the soil, remove organic matter using Hydrogen peroxide (H2O2) and transfer the sample into 250 mL bottle, we added 5 mL of 5 percent Calgon and shaked overnight. The entire contents of the bottle was introduced to the laser analyser for measuring particles size distribution. (CEH Bangor)\n\nSoil water content and loss on ignition (LOI). Soil initially dried at 25 degrees Celsius for 14 days, followed by weight a 10 gram subsample into a crucible and put into an oven at 105 degrees Celsius for 24 hours, the weight loss provides the soil water content. The same crucible with the dry soil is introduced into a Carbolite furnace at 375 degrees Celsius for 16 hours, this second weight loss is quantified and reported as loss on ignition (LOI). (CEH Bangor)\n\npH and electrical conductivity (EC). In a beaker we added 25ml deionised water into 10g field moist soil; we allowed 30 minutes equilibration time with stirring at time=0 and 15 minutes, we measured pH using Corning 220 pH meter, VWR combination electrode 662-1805. EC is measured after pH in the same beaker using a Jenway 4510 with a 662-1805 electrode. pH in CaCl2 is measured after EC following addition of 2 mL 0.125 moles (M) Calcium Chloride (CaCl2). (CEH Bangor)\n\nPermanganate oxidizable carbon (POXC). We manually quarter 2.5g of soil subsample and analyse for POXC using 0.2M KMnO4 following the method described in Weil et al., 2003. (CEH Bangor)\n\nCitrate-P. We manually quarter 0.5 grams of soil and analyse for citrate extractable phosphorous following the method described in DeLuca et al. (2015). (CEH Bangor)\n\nAggregate size distribution.  We sieved about 1 gram of air-dry soil through a stack of 2 mm and 1 mm sieves, the fraction collected into the 1 mm sieve was introduced into a Beckman-Coulter LS 13320 laser diffraction particle size analyser and measured for the size distribution. (CEH Bangor)\n\nTotal carbon and nitrogen was measured on a Vario EL which uses oxidative combustion followed by thermal conductivity detection (CEH Lancaster).\n\nTotal phosphorus was measured at CEH Lancaster. Total phosphorus is digested with a H2O2/Sulphuric Acid (H2SO4) based digestion reagent mix (along with selenium and lithium sulphate) and subsequent colorimetric analysis carried out on a Seal discrete analyser (CEH Lancaster).\n\nAll results were entered into Excel spreadsheets providing individual datasets for each set of N parameters. Data were exported from Excel as .csv files for ingestion into the EIDC. ","locations":["POLYGON((-4.022 50.767, -4.022 55.873, -3.191 55.873, -3.191 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0001-8610-9717","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0003-2869-0616","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8659-6092","https://orcid.org/0000-0002-2713-4389"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","Unaffiliated","Bangor University","Rothamsted Research","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7a87dde4-b54e-49b0-8751-1d59e8aebb90","10.5285/7a87dde4-b54e-49b0-8751-1d59e8aebb90"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/0347fy350","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Project website","Related paper"],"supplementalName":["CENTRE FOR IMPROVED NITROGEN AGRONOMY"," Miranda et al. (2001)","Weil et al., (2003)","DeLuca et al. (2015)"],"title":"Soil chemical and physical properties from inorganic fertiliser additions to grassland at North Wyke, Henfaes and Easter Bush, UK (2016)","topic":["0/Soil/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"The data consist of soil physicochemical and biological data for three soil depths (0-15, 15-30 and 30-60 cm) from a three-cut silage plot trial located at three grassland sites within the UK collected between April 2016 and October 2016. The sites were Rothamsted Research..."},{"publicationDate":"2023-05-30T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Hampshire County Council","Natural England"],"authorGivenName":["L.E.","J.W.","E.V.","L.","S.","N.","K.","J.","A.R.","M.","R.F."],"authorFamilyName":["Ridding","Redhead","Upcott","Hulmes","Mitschunas","Howell","Christelow","Wickenden","Fussell","Plunkett","Pywell"],"authorFullName":["Ridding, L.E.","Redhead, J.W.","Upcott, E.V.","Hulmes, L.","Hulmes, S.","Mitschunas, N.","Howell, K.","Christelow, J.","Wickenden, A.R.","Fussell, M.","Plunkett, J.","Pywell, R.F."],"authorOrcid":["https://orcid.org/0000-0003-3141-8795","https://orcid.org/0000-0002-2233-3848","https://orcid.org/0000-0003-1133-3102","https://orcid.org/0000-0001-9622-1622","https://orcid.org/0000-0001-6431-9959"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/01vd10e19","https://ror.org/00r66pz14"],"catalogue":"eidc","description":"Vegetation data from field surveys undertaken at two experimental trials at Martin Down NNR, to investigate the potential for reducing dense Brachypodium pinnatum cover (experiment 1) and preventing further expansion of sparse cover (experiment 2). Experiment 1 explores the use of herbicide and reseeding, whilst experiment 2 examines cutting and grazing in the spring, autumn and both seasons. Percentage cover of all vascular plant species were recorded in 50 cm x 50 cm quadrats in each treatment replicate for both experiments. Surveys were undertaken in 2019 as a baseline before the experiments commenced, and post treatment in 2020, 2021 and 2022. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"grant":["NE/N018125/1"],"identifier":"f15e64c0-db65-40ec-8b6d-50573f5f6694","incomingCitationCount":0,"givenName":["L.E.","J.W.","E.V.","L.","S.","N.","K.","J.","A.R.","M.","R.F."],"familyName":["Ridding","Redhead","Upcott","Hulmes","Mitschunas","Howell","Christelow","Wickenden","Fussell","Plunkett","Pywell"],"fullName":["Ridding, L.E.","Redhead, J.W.","Upcott, E.V.","Hulmes, L.","Hulmes, S.","Mitschunas, N.","Howell, K.","Christelow, J.","Wickenden, A.R.","Fussell, M.","Plunkett, J.","Pywell, R.F."],"keyword":["Hampshire","Dorset","Wiltshire","Brachypodium pinnatum","Tor-grass","cutting","reseeding","vascular plants","calcareous grassland","grazing","grassland","herbicide","nature reserve","National Nature Reserve"],"keywordsPlace":["Hampshire","Dorset","Wiltshire"],"keywordsOther":["Brachypodium pinnatum","Tor-grass","cutting","reseeding","vascular plants","calcareous grassland","grazing","grassland","herbicide","nature reserve","National Nature Reserve"],"licence":"Open government licence","lineage":"Three experimental blocks were established over dense patches of B. pinnatum for the herbicide spraying experiment (experiment 1). Each block consisted of four plots, each measuring 8 m x 5 m. Four treatments were randomly applied within each block: 1) spray and reseed, 2) spray and no reseed, 3) spray twice and reseed and 4) spray twice and no reseeding. All plots were first sprayed with glyphosate in September 2019, followed by a cut and removal of dead material in April 2020. For plots which required a second spray, this took place in June 2020, followed by another cut and removal in September 2020. Seeding on the relevant treatments was also carried out in September 2020, using seeds that were hand-collected throughout the season at Martin Down. For more detailed information on the seeding process, please see supporting document.\nOne large plot was established for the cut and graze experiment (experiment 2) over sparser cover of B. pinnatum, consisting of nine plots each measuring 20 m x 18 m. Three replicates of the three treatments were applied: autumn cut and graze (treatment 5), spring cut and graze (treatment 6), and both spring and autumn cut and graze (treatment 7). \nVegetation recording was carried out in late August/early September of 2019 (before all treatments were applied to provide a baseline), and post treatment in 2020, 2021 and 2022. For the spraying experiment, vegetation surveys were conducted within each plot by placing five 50 cm × 50 cm quadrats at approximately 1 m intervals (i.e. vertices of a “W”-shaped transect through the plot). Quadrats avoided the outermost 50 cm of each plot, where there was an increased potential for spray drift from adjacent areas. Within each quadrat, the percentage cover of B. pinnatum, all other vascular plants and bare ground were recorded. A total of seven quadrats in each plot were recorded for the cut and graze experiment, since they were larger and the cover of B. pinnatum was more variable. Five quadrats in a diamond formation in the centre (5 m apart) were recorded, as well as two quadrats on the edge of each plot (avoiding the outermost 2 m).\nData were collected by experienced field ecologists, the same ecologists carried out all surveys. Paper data sheets were digitised into Excel and were checked for any anomalies.\n","locations":["POLYGON((-1.959 50.958, -1.959 50.992, -1.902 50.992, -1.902 50.958, -1.959 50.958))"],"orcid":["https://orcid.org/0000-0003-3141-8795","https://orcid.org/0000-0002-2233-3848","https://orcid.org/0000-0003-1133-3102","https://orcid.org/0000-0001-9622-1622","https://orcid.org/0000-0001-6431-9959"],"organisation":["UK Centre for Ecology & Hydrology","Hampshire County Council","Natural England","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f15e64c0-db65-40ec-8b6d-50573f5f6694","10.5285/f15e64c0-db65-40ec-8b6d-50573f5f6694"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/01vd10e19","https://ror.org/00r66pz14","https://ror.org/04xw4m193"],"state":"published","title":"Vegetation data from experimental trials to investigate the control of Brachypodium pinnatum at Martin Down National Nature Reserve, UK, 2019-2022","version":1.0,"view":["public","shofer"],"shortenedDescription":"Vegetation data from field surveys undertaken at two experimental trials at Martin Down NNR, to investigate the potential for reducing dense Brachypodium pinnatum cover (experiment 1) and preventing further expansion of sparse cover (experiment 2). Experiment 1 explores..."}],"facets":[{"fieldName":"topic","displayName":"Topic","hierarchical":true,"admin":false,"results":[{"name":"Agriculture","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CScottish+Government%E2%80%99s+Rural+%26+Environment+Science+%26+Analytical+Services+Division%2C+through+their+Strategic+Research+Programmes+%282006-2011%2C+2011-2016+and+2016%E2%80%932022%29&facet=funder%7CBiotechnology+and+Biological+Sciences+Research+Council&facet=topic%7C0%2FAgriculture%2F","active":false,"count":69},{"name":"Animal 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