{"numFound":31,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CScottish+Government%E2%80%99s+Rural+%26+Environment+Science+%26+Analytical+Services+Division%2C+through+their+Strategic+Research+Programmes+%282006-2011%2C+2011-2016+and+2016%E2%80%932022%29&facet=funder%7CBiotechnology+and+Biological+Sciences+Research+Council","nextPage":"http://catalogue.ceh.ac.uk/eidc/documents?page=2&facet=funder%7CScottish+Government%E2%80%99s+Rural+%26+Environment+Science+%26+Analytical+Services+Division%2C+through+their+Strategic+Research+Programmes+%282006-2011%2C+2011-2016+and+2016%E2%80%932022%29&facet=funder%7CBiotechnology+and+Biological+Sciences+Research+Council","results":[{"publicationDate":"2025-04-11T00:00:00.000+00:00","authorAffiliation":["University of Reading","University of Warwick","Cabinet Office","Forest Research","University of Oxford","UK Centre for Ecology & Hydrology","University of Birmingham","Leiden University"],"authorGivenName":["L.J.","M.","M.S.J.","T.","A.","O.R.","G.A.","G.M.","N","K","R.W.","D","A.S.","I.M.","C."],"authorFamilyName":["Shaw","Rabiey","Garcia","Clarke","Broome","Corbett","Booth","Barrett","Preston","Barsoum","Schonrogge","Jackson","Ray","Dudley","Kamerling","Speed"],"authorFullName":["Shaw, L.J.","Rabiey, M.","Garcia, M.S.J.","Clarke, T.","Broome, A.","Corbett, L.J.","Booth, O.R.","Barrett, G.A.","Preston, G.M.","Barsoum, N.","Schonrogge, K.","Jackson, R.W.","Ray, D.","Dudley, A.S.","Kamerling, I.M.","Speed, C."],"authorOrcid":["https://orcid.org/0000-0002-4985-7078","https://orcid.org/0000-0001-8463-9087","https://orcid.org/0000-0002-7745-6351","https://orcid.org/0000-0003-0619-2085","https://orcid.org/0000-0003-1509-0179","https://orcid.org/0000-0003-3882-4438","https://orcid.org/0000-0003-0122-6493","https://orcid.org/0000-0002-2042-4105","https://orcid.org/0000-0002-8975-8728","https://orcid.org/0000-0003-3321-8631"],"authorRor":["https://ror.org/05v62cm79","https://ror.org/01a77tt86","https://ror.org/007f5s288","https://ror.org/03wcc3744","https://ror.org/052gg0110","https://ror.org/00pggkr55","https://ror.org/03angcq70","https://ror.org/027bh9e22"],"catalogue":"eidc","description":"This dataset contains information on tree, site and soil properties from three oak woodland sites in southern England: Writtle Forest, Monks Wood, and Stratfield Brake. Data were collected in 2016 to investigate the relationship between Acute Oak Decline (AOD) symptoms and local environmental factors. The study included 10 symptomatic and 10 asymptomatic trees at each site.\n\nTree characteristics include latitude and longitude coordinates, species-level classification (based on morphological measurements and genetic SNP analysis confirming identity as Quercus robur, Quercus petraea, or hybrids), tree dimensions (height, diameter at 1.35 m, crown dimensions), crown condition (density reduction), and rooting depth.\n\nData on the surrounding site context were also collected, including depth to gleying, basal area of surrounding stands (measured at 0–20 m and 20–40 m), compound topographic index, and tree social status (e.g., dominant, codominant, suppressed).\n\nSoil characteristics were analysed to capture both physical and chemical properties. Physical properties included texture and bulk density, while chemical analyses measured organic matter content, pH, total carbon and nitrogen, mineral nitrogen (nitrate and ammonium), ‘Olsen’ extractable phosphorus, cation exchange capacity, and concentrations of exchangeable cations.\n\nThe work was supported by the grant BB/N022831/1 (‘PuRpOsE’) with additional funding from the Woodland Trust, Bartlett’s Tree Experts and The University of Reading.\n","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N022831/1"],"identifier":"9947ccc9-7396-4821-b095-c374bd857305","incomingCitationCount":0,"givenName":["L.J.","M.","M.S.J.","T.","A.","O.R.","G.A.","G.M.","N","K","R.W.","D","A.S.","I.M.","C."],"familyName":["Shaw","Rabiey","Garcia","Clarke","Broome","Corbett","Booth","Barrett","Preston","Barsoum","Schonrogge","Jackson","Ray","Dudley","Kamerling","Speed"],"fullName":["Shaw, L.J.","Rabiey, M.","Garcia, M.S.J.","Clarke, T.","Broome, A.","Corbett, L.J.","Booth, O.R.","Barrett, G.A.","Preston, G.M.","Barsoum, N.","Schonrogge, K.","Jackson, R.W.","Ray, D.","Dudley, A.S.","Kamerling, I.M.","Speed, C."],"keyword":["England","Biodiversity","Acute Oak Decline","Soil Properties","Forest Mensuration","Quercus robur","Quercus petraea","gleying"],"keywordsPlace":["England"],"keywordsTheme":["Biodiversity"],"keywordsOther":["Acute Oak Decline","Soil Properties","Forest Mensuration","Quercus robur","Quercus petraea","gleying"],"licence":"Non-Open government licence","lineage":"Selection of trees for sampling involved systematic field surveys, targeting symptomatic (stem bleeding cankers) and asymptomatic trees. \nTree and site characteristics were determined using standardized forest mensuration protocols. Soil samples (taken from 5-15 cm and 40-50 cm depths from randomly-selected positions 1.5-2.0 m away from the stem from each tree) were prepared for analysis of physical and chemical properties using standard laboratory methods (e.g., BaCl2 extractions for exchangeable cations, and the Olsen method for phosphorus). Soil samples were analysed using laboratory equipment such as a Malvern Mastersizer 3000 for particle size analysis, a FLASH CN elemental analyzer for carbon and nitrogen content, and a Perkin Elmer 3000 ICP-OES for cation analysis. A Skalar SAN++ autoanalyzer was used for phosphate, nitrate and ammonium determination.\nVariables (units) include tree dimensions (meters, centimetres), soil chemical concentrations (mg/kg), and physical properties such as texture (percentages of clay, silt, and sand). Additional variables include crown density reduction (percentage).\nComposite soil samples were prepared by pooling subsamples, and chemical analysis results are normalized to dry soil weight.\nLaboratory analyses included technical replication (e.g., three replicates for LOI, five for particle size distribution) and calibration using external standards. Blanks were analysed alongside samples for nutrient and cation extraction procedures.\nData reliability may be influenced by the sampling resolution and the inherent variability in soil properties. Some chemical concentrations were below detection limits and are entered as half the detection limit, following USEPA (2000) guidelines. Observations and samples represent a single time point, limiting temporal insights into soil and tree dynamics.\n","locations":["POLYGON((-6.452 49.864, -6.452 55.812, 1.768 55.812, 1.768 49.864, -6.452 49.864))"],"orcid":["https://orcid.org/0000-0002-4985-7078","https://orcid.org/0000-0001-8463-9087","https://orcid.org/0000-0002-7745-6351","https://orcid.org/0000-0003-0619-2085","https://orcid.org/0000-0003-1509-0179","https://orcid.org/0000-0003-3882-4438","https://orcid.org/0000-0003-0122-6493","https://orcid.org/0000-0002-2042-4105","https://orcid.org/0000-0002-8975-8728","https://orcid.org/0000-0003-3321-8631"],"organisation":["University of Reading","University of Warwick","Cabinet Office","Forest Research","University of Oxford","UK Centre for Ecology & Hydrology","University of Birmingham","Leiden University","NERC EDS Environmental Information Data Centre","University of Reading and The Crown"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9947ccc9-7396-4821-b095-c374bd857305","10.5285/9947ccc9-7396-4821-b095-c374bd857305"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Reading and The Crown"],"ror":["https://ror.org/05v62cm79","https://ror.org/01a77tt86","https://ror.org/007f5s288","https://ror.org/03wcc3744","https://ror.org/052gg0110","https://ror.org/00pggkr55","https://ror.org/03angcq70","https://ror.org/027bh9e22","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["This dataset forms the basis of the results presented in the following pre-print:\n\nLiz J. Shaw, Mojgan Rabiey, Mateo S J Garcia, Toni Clarke, Alice Broome, Luci Corbett, Oliver R. Booth, Glyn A. Barrett, Gail M. Preston, Nadia Barsoum, Karsten Schonrogge, Robert W. Jackson and Duncan Ray. The cause-effect conundrum of local-scale site and soil factors in acute oak decline (AOD), bioRxiv 2025.01.24.634765"],"title":"Soil, site and tree characteristics for acute oak decline (AOD) symptomatic and non-symptomatic oak in three UK woodlands, southern England, 2016","topic":["0/Biodiversity/"],"version":1.0,"view":["public","katwri"],"shortenedDescription":"This dataset contains information on tree, site and soil properties from three oak woodland sites in southern England: Writtle Forest, Monks Wood, and Stratfield Brake. Data were collected in 2016 to investigate the relationship between Acute Oak Decline (AOD) symptoms..."},{"publicationDate":"2024-06-05T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["L.R.","M.","C.M.","A.","B.A.","F."],"authorFamilyName":["Norton","Wagner","Wood","Pinder","Brentegani","Hunt","Dodd","Seaton"],"authorFullName":["Norton, L.R.","Wagner, M.","Wood, C.M.","Pinder, A.","Brentegani, M.","Hunt, A.","Dodd, B.A.","Seaton, F."],"authorOrcid":["https://orcid.org/0000-0002-1622-0281","https://orcid.org/0000-0002-0394-2998","https://orcid.org/0000-0002-9494-6272","https://orcid.org/0000-0002-2022-7451"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This set of data includes records of vegetation species and characteristics, soil quality metrics and aspects of management relating to a single field on each sampled farm. Data were collected in 2019, from farms across Great Britain belonging to the Pasture Fed Livestock Association (PFLA).\nThe data were collected by the UK Centre of Ecology & Hydrology, during a project funded by the BBSRC, seeking to evidence the impacts of pasture fed livestock approaches on grassland parameters, in particular, sward composition and associated soil qualities.\n","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/R005710/1"],"identifier":"e46dc740-2dc7-4f9f-b2b6-24748d86759a","incomingCitationCount":0,"givenName":["C.M.","L.R.","M.","A.","B.A.","F."],"familyName":["Wood","Norton","Wagner","Pinder","Brentegani","Hunt","Dodd","Seaton"],"fullName":["Wood, C.M.","Norton, L.R.","Wagner, M.","Pinder, A.","Brentegani, M.","Hunt, A.","Dodd, B.A.","Seaton, F."],"keyword":["Agriculture","Biodiversity","Environmental survey","Soil","farm"],"keywordsTheme":["Agriculture","Biodiversity","Environmental survey","Soil"],"keywordsOther":["farm"],"licence":"Open government licence","lineage":"Data were collected by trained members of UKCEH staff, according to standardised protocols in the summer of 2019. Vegetation and management records were collected on electronic recording devices. Soil samples were analysed at UKAS Accredited labs at UKCEH Lancaster. All data were transferred to secure databases at UKCEH Lancaster once collected.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-0394-2998","https://orcid.org/0000-0002-1622-0281","https://orcid.org/0000-0002-9494-6272","https://orcid.org/0000-0002-2022-7451"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e46dc740-2dc7-4f9f-b2b6-24748d86759a","10.5285/e46dc740-2dc7-4f9f-b2b6-24748d86759a"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Soil metrics, vegetation species and biomass data, and field management information from pasture fed livestock farms across Great Britain, 2019","topic":["0/Agriculture/","0/Biodiversity/","0/Environmental survey/","0/Soil/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"This set of data includes records of vegetation species and characteristics, soil quality metrics and aspects of management relating to a single field on each sampled farm. Data were collected in 2019, from farms across Great Britain belonging to the Pasture Fed Livestock..."},{"publicationDate":"2022-05-04T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Phenotypes (growth, phenology and form) for Scots pine trees in a long-term common garden trial grown in three nurseries in Scotland and surveyed from 2007 to 2011.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government"],"grant":["NE/K012177/1"," BB/L012243/1"],"identifier":"29ced467-8e03-4132-83b9-dc2aa50537cd","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Phenology","Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth","Tree form","Tree nursery"],"keywordsTheme":["Phenology"],"keywordsOther":["Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth","Tree form","Tree nursery"],"licence":"Open government licence","lineage":"A multi-site trial was established at three nursery sites in Scotland in 2007 using seed collected from 21 native Caledonian pinewood provenances. Each nursery contained 8 seedlings from each of 10 families per provenance (total 1,680 trees per nursery).\nGrowth (height and stem diameter), tree form (canopy width, needle length, number of buds), and phenology (budburst timing and growth cessation) were measured from 2007 to 2011, although not all traits were recorded in every year. ","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","The James Hutton Institute","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/29ced467-8e03-4132-83b9-dc2aa50537cd","10.5285/29ced467-8e03-4132-83b9-dc2aa50537cd"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","The James Hutton Institute","Forest Research"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: nursery phenotypes, 2007-2011","topic":["0/Phenology/"],"version":1.0,"view":["public","matnic"],"shortenedDescription":"Phenotypes (growth, phenology and form) for Scots pine trees in a long-term common garden trial grown in three nurseries in Scotland and surveyed from 2007 to 2011."},{"publicationDate":"2019-04-23T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Rothamsted Research","Bangor University"],"authorGivenName":["T.I.","R.I.","A","M.","I.M.","P.R.","A.M.","T.H.","A.R.","D.R.","D.L.","S."],"authorFamilyName":["Goodall","Griffiths","Blaud","Abadie","Clark","Hirsch","Carswell","Misselbrook","Sánchez-Rodríguez","Chadwick","Jones","Reinsch"],"authorFullName":["Goodall, T.I.","Griffiths, R.I.","Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Carswell, A.M.","Misselbrook, T.H.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L.","Reinsch, S."],"authorOrcid":["https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0003-4649-0677"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/006jb1a24"],"catalogue":"eidc","description":"The data consist of nitrogen gene data, soil biodiversity indices and microbial community composition for three soil depths (0-15, 15-30 and 30-60 cm) from a winter wheat field experiment located in the United Kingdom and collected between April 2017 and August 2017. The sites were Rothamsted Research at North Wyke in Devon  and Bangor University at Henfaes Research Station in North Wales.\n\nAt each site measurements were taken from 15 plots, organised within a randomised complete block design where 5 plots did not receive fertilizers (controls), 5 plots received food-based digestate, and 5 plots received acidified food based digestate a nitrification inhibitor. Soil samples were taken within two weeks of digestate application and shortly before winter wheat harvest.\n\nSoil chemical parameters were: soil nitrate, ammonium, dissolved organic carbon and nitrogen, amino acids and peptides, soil organic matter content as loss-on-ignition, pH, sodium, potassium, calcium, magnesium, permanganate oxdisable carbon citric acid extractable phosphorous, Olsen-P and total carbon, nitrogen and phosphorus. Soil biological measure were: microbial biomass carbon and nitrogen. \n\nSoil samples were taken by members of staff from Centre of Ecology & Hydrology (Bangor), Bangor University, School of Environment, Natural Resources & Geography Sustainable Agricultural Sciences, and Rothamsted Research North Wyke. Measurements were carried out Rothamsted Research Harpenden and the Centre of Ecology & Hydrology (Wallingford). Soil physico-chemical parameters were measured on the same soil samples and are presented in a related dataset. https://catalogue.ceh.ac.uk/id/90df9dfa-a0c8-4ead-a13d-0a0a13cda7ab\n\nData was collected for the Newton Fund project “UK-China Virtual Joint Centre for Improved Nitrogen Agronomy”. Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC -  Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"391c0294-07f1-4856-b592-428bd44055ca","incomingCitationCount":0,"givenName":["S.","T.I.","R.I.","A","M.","I.M.","P.R.","A.M.","T.H.","A.R.","D.R.","D.L."],"familyName":["Reinsch","Goodall","Griffiths","Blaud","Abadie","Clark","Hirsch","Carswell","Misselbrook","Sánchez-Rodríguez","Chadwick","Jones"],"fullName":["Reinsch, S.","Goodall, T.I.","Griffiths, R.I.","Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Carswell, A.M.","Misselbrook, T.H.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L."],"keyword":["winter wheat","nitrogen","fertiliser","digestate","operational taxonomic unit","diversity index","bacterial community composition"],"keywordsOther":["winter wheat","nitrogen","fertiliser","digestate","operational taxonomic unit","diversity index","bacterial community composition"],"licence":"Open government licence","lineage":"Soil samples were taken by members of staff from the different sites. Samples were sent to Rothamsted Research Harpenden for DNA extractions and extracts were analysed for nitrogen genes (nifH, amoA, nirK, nirS, nosZ, ureC). Extracts were also sent to CEH Wallingford for analyses of operational taxonomic units (OTUs').\n\nSoil community DNA was extracted from 0.25 grams soil using the MoBio DNA PowerSoil DNA isolation kit (Mo Bio Laboratories, Inc. Carlsbad, CA), following manufacturer’s protocol. Extracted DNA was quantified by fluorometer Qubit® 2.0 dsDNA BR Assay Kit (Thermo Fisher Scientific) and quality checked by nanodrop (Thermo Fisher Scientific).\n\nQuantitative-Polymerase chain reaction (qPCR) protocols were followed as detailed in De Sosa et al. 2018.\n\nExtracted DNA was supplied from Rothamsted Research in Harpenden for amplicon sequencing at the facilities of the Molecular Ecology Group, Centre for Ecology & Hydrology, Wallingford. <50 μL volumes of DNA extract were supplied in 96-well plate format, these were subject to 16S Ribosomal ribonucleic acid (rRNA) amplicon sequencing as described in Kozich 2013 and Internal transcribed spacer (ITS) rRNA amplicon sequencing employing the Kozich 2013 strategy and Ihrmark 2012.\n\nAll results were entered into a Microsoft Excel spreadsheet and converted to .csv files for ingestion into the Environmental Information Data Centre.","locations":["POLYGON((-4.022 50.767, -4.022 53.241, -3.892 53.241, -3.892 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","Rothamsted Research","Bangor University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/391c0294-07f1-4856-b592-428bd44055ca","10.5285/391c0294-07f1-4856-b592-428bd44055ca"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/006jb1a24","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Kozich, J.J., Westcott, S.L., Baxter, N.T., Highlander, S. K., & Schloss, P.D. (2013). Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform. Applied and Environmental Microbiology, 79(17), 5112–5120.","de Sosa, L.L., Glanville, H.C., Marshall, M.R., Schnepf, A., Cooper, D.M., Hill, P.W., … Jones, D.L. (2018). Stoichiometric constraints on the microbial processing of carbon with soil depth along a riparian hillslope. Biology and Fertility of Soils, 54(8), 949–963."],"supplementalName":["The UK-China Virtual Joint Centre for Improved Nitrogen Agronomy (CINAG)"],"title":"Soil biological properties from a digestate experiment on winter wheat at North Wyke and Henfaes Farm, UK (2017)","version":1.0,"view":["public","danor"],"shortenedDescription":"The data consist of nitrogen gene data, soil biodiversity indices and microbial community composition for three soil depths (0-15, 15-30 and 30-60 cm) from a winter wheat field experiment located in the United Kingdom and collected between April 2017 and August 2017...."},{"publicationDate":"2024-08-22T00:00:00.000+00:00","authorAffiliation":["University of Aberdeen","Muséum National d'Histoire Naturelle ","Boise State University "],"authorGivenName":["K.","O.","E.","L.M.","G.","B."],"authorFamilyName":["Britton","Czére","Gutierrez","Reynard","Duncan","de Roos"],"authorFullName":["Britton, K.","Czére, O.","Gutierrez, E.","Reynard, L.M.","Duncan, G.","de Roos, B."],"authorOrcid":["https://orcid.org/0000-0002-9478-5966","https://orcid.org/0000-0002-9732-4583","https://orcid.org/0000-0002-9120-6236","https://orcid.org/0000-0001-5732-1532","https://orcid.org/0000-0001-6943-9773","https://orcid.org/0000-0002-2750-3914"],"catalogue":"eidc","description":"Vitamin D (25(OH)D3 and 1,25(OH)D3) concentrations of incrementally-sampled preserved human hair from non-mortuary contexts at the Yup’ik archaeological site of Nunalleq Alaska (~1650 AD). Multi-isotope isotope data (carbon, nitrogen, sulphur, oxygen and hydrogen) for the same samples are found in accompanying files. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"identifier":"8d5af777-384c-4114-af6b-69cdac239810","incomingCitationCount":0,"givenName":["K.","O.","E.","L.M.","G.","B."],"familyName":["Britton","Czére","Gutierrez","Reynard","Duncan","de Roos"],"fullName":["Britton, K.","Czére, O.","Gutierrez, E.","Reynard, L.M.","Duncan, G.","de Roos, B."],"keyword":["Archaeology","palaeodiet","health","nutrition","stable isotopes","metabolomics"],"keywordsOther":["Archaeology","palaeodiet","health","nutrition","stable isotopes","metabolomics"],"licence":"Open government licence","lineage":"The dataset was generated as a part of the NERC-funded project NE/X012980/1 ‘Determining vitamin D status in precontact Western Alaska: a new method for exploring past health and dietary adaptations to high-latitude living’, as well as from an earlier (internally-allocated) BBSRC-funded pilot study (in the case of some of the isotope data). Vitamin D data were all generated at the University of Aberdeen, and isotope data were generated at SUERC (carbon, nitrogen, sulphur) and Boise State University (oxygen, hydrogen). ","locations":["POLYGON((-161.89 59.71, -161.89 59.71, -161.89 59.71, -161.89 59.71, -161.89 59.71))"],"orcid":["https://orcid.org/0000-0002-9478-5966","https://orcid.org/0000-0002-9732-4583","https://orcid.org/0000-0002-9120-6236","https://orcid.org/0000-0001-5732-1532","https://orcid.org/0000-0001-6943-9773","https://orcid.org/0000-0002-2750-3914"],"organisation":["University of Aberdeen","Muséum National d'Histoire Naturelle ","Boise State University ","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8d5af777-384c-4114-af6b-69cdac239810","10.5285/8d5af777-384c-4114-af6b-69cdac239810"],"resourceStatus":"Embargoed","resourceType":"Dataset","rightsHolder":["University of Aberdeen"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Vitamin D and stable isotope data from human hair from the archaeological site, Nunalleq, Alaska","version":1.0,"view":["public","simgil"],"shortenedDescription":"Vitamin D (25(OH)D3 and 1,25(OH)D3) concentrations of incrementally-sampled preserved human hair from non-mortuary contexts at the Yup’ik archaeological site of Nunalleq Alaska (~1650 AD). Multi-isotope isotope data (carbon, nitrogen, sulphur, oxygen and hydrogen) for..."},{"publicationDate":"2022-05-04T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Phenotypes for Scots pine mother trees and their cones/seed from 21 populations across Scotland in 2007. The seed was used to establish a long-term multisite common garden trial at three nurseries/field sites.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government"],"grant":["NE/K012177/1","BB/L012243/1"],"identifier":"ac687a66-135e-4c65-8bf6-c5a3be9fd9aa","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Growth","Mother tree","Seed"],"keywordsOther":["Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Growth","Mother tree","Seed"],"licence":"Open government licence","lineage":"Twenty-one Caledonian pinewood populations were visited in 2007 and cones collected from 10 trees (known as ‘mother trees’) per population. Phenotypes (including height, DBH, soil depth, competition and altitude) were recorded for each mother tree. The size and weight of cones (10 per mother tree) and seeds (all seeds within each cone: total number, percentage viability and weight) were also recorded.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","The James Hutton Institute","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/ac687a66-135e-4c65-8bf6-c5a3be9fd9aa","10.5285/ac687a66-135e-4c65-8bf6-c5a3be9fd9aa"],"resourceStatus":"Superseded","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: mother tree, cone and seed phenotypes, 2007","version":1.0,"view":["public","matnic"],"shortenedDescription":"Phenotypes for Scots pine mother trees and their cones/seed from 21 populations across Scotland in 2007. The seed was used to establish a long-term multisite common garden trial at three nurseries/field sites."},{"publicationDate":"2024-10-15T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J. K.","J. A.","J. E.","G. R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744"],"catalogue":"eidc","description":"This dataset contains daily temperature and temperature variance measurements recorded at three nurseries in Scotland between 2007 and 2012. Each nursery contained Scots pine trees grown using seed collected from 21 native Caledonian pinewood provenances, with 8 seedlings from each of 10 families per provenance (total 1680 trees per nursery) included.\n\nThis dataset was created as part of a multi-site long term garden experimental trial investigating the effect of nursery environment on Scots pine growth and development, and is part of the newLEAF and PROTREE projects. \n\n\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government","Department for Environment Food and Rural Affairs","Economic and Social Research Council"],"grant":["NE/V019813/1","BB/L012243/1"],"identifier":"81841d93-41e2-47a7-b15a-92d1e1cf07f7","incomingCitationCount":0,"givenName":["A.","J. K.","J. A.","J. E.","G. R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Environmental survey","Pinus sylvestris","Scots pine","pine forest","Caledonian pinewood","Adaptive trait variation","Common garden experiment","growth","temperature","variance","tree nursery"],"keywordsTheme":["Environmental survey"],"keywordsOther":["Pinus sylvestris","Scots pine","pine forest","Caledonian pinewood","Adaptive trait variation","Common garden experiment","growth","temperature","variance","tree nursery"],"licence":"Open government licence","lineage":"Temperature was automatically recorded hourly using a data logger in each location from 2007 to 2012. Daily maximum, minimum and average temperature and temperature variances were calculated from the hourly data and are presented here.  Where more than one hourly record was missing within a 24 hour period, no temperature or temperature variances were calculated for this day and the day's record is omitted from this dataset","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre","The James Hutton Institute"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/81841d93-41e2-47a7-b15a-92d1e1cf07f7","10.5285/81841d93-41e2-47a7-b15a-92d1e1cf07f7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: temperatures and temperature variances for tree nurseries, 2007-2012","topic":["0/Environmental survey/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"This dataset contains daily temperature and temperature variance measurements recorded at three nurseries in Scotland between 2007 and 2012. Each nursery contained Scots pine trees grown using seed collected from 21 native Caledonian pinewood provenances, with 8 seedlings..."},{"publicationDate":"2024-09-18T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","ICAR-Indian Agricultural Research Institute"],"authorGivenName":["N.","A.","J."],"authorFamilyName":["Cowan","Bhatia","Jain","Drewer"],"authorFullName":["Cowan, N.","Bhatia, A.","Jain, N.","Drewer, J."],"authorOrcid":["https://orcid.org/0000-0002-7473-7916","https://orcid.org/0000-0001-6387-7836","https://orcid.org/0000-0002-6263-6341"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains rice crop biomass, and greenhouse gas flux measurements from five plots exposed to different fertiliser treatments and continuous and intermittent irrigation protocols. \n\nThe gas flux data include methane, nitrous oxide, and ammonia, which were measured using chamber methodologies. The dataset also includes irrigation protocols and site environmental properties such as soil pH, bulk density, and texture. Agronomic yields are reported in terms of rice grain and total crop harvests as well as total nitrogen use efficiency.\n\nThis dataset was created as part of an experiment carried out in rice paddies at the Indian Agricultural Research Institute (Delhi, India) in 2016. The experiment aimed to compare the environmental impacts of continuous and intermittent flooding of rice in relation to methane, nitrous oxide and ammonia emissions and the implications for nitrogen use efficiency and yield. ","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council","Natural Environment Research Council","National Initiative for Climate Resilient Agriculture Project "],"grant":["BB/N013492/1","NE/S009019/1","NICRA-IARI/12-115"],"identifier":"46aafc00-6742-41df-b8be-09a8d5d86610","incomingCitationCount":0,"givenName":["N.","A.","J."],"familyName":["Cowan","Bhatia","Jain","Drewer"],"fullName":["Cowan, N.","Bhatia, A.","Jain, N.","Drewer, J."],"keyword":["Agriculture","greenhouse gas","fertiliser","nitrogen","urea","rice paddy","irrigation"," methane","ammonia","nitrous oxide","crop production"],"keywordsTheme":["Agriculture"],"keywordsOther":["greenhouse gas","fertiliser","nitrogen","urea","rice paddy","irrigation"," methane","ammonia","nitrous oxide","crop production"],"licence":"Open government licence","lineage":"Field data was collected in India at the experimental farm of the Indian Agricultural Research Institute, New Delhi, India. Data was passed to UKCEH in the UK for further analysis.\n\nRice yields were determined from one square meter of area in each plot in triplicate. The total nitrogen content of the crops was estimated using the Kjeldahl method, for more information please see the supporting documentation. \n\nCollection of greenhouse gas samples was carried out using the static chamber technique. Concentrations of methane (CH4) in the gas samples was analysed using a gas chromatograph (GC) fitted with a flame ionization detector (FID)(GC 8A Series, Shimadzu) and nitrogen oxide samples were analysed using a GC with electron capture detector (ECD)(Hewlett Packard 5890 Series II).\n\nEmissions of gas were measured using static chambers. Air from chambers was bubbled through 0.01N boric acid solution containing mixed indicator (methyl red and bromocresol green) using a vacuum pump with a flow rate of 3 L/min for 3.5 minutes. The volatilised ammoniacal nitrogen was determined by the titration of boric acid solution with 0.001N sulphuric acid.","locations":["POLYGON((77.161 28.659, 77.161 28.659, 77.161 28.659, 77.161 28.659, 77.161 28.659))"],"orcid":["https://orcid.org/0000-0002-7473-7916","https://orcid.org/0000-0001-6387-7836","https://orcid.org/0000-0002-6263-6341"],"organisation":["UK Centre for Ecology & Hydrology","ICAR-Indian Agricultural Research Institute","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/46aafc00-6742-41df-b8be-09a8d5d86610","10.5285/46aafc00-6742-41df-b8be-09a8d5d86610"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Experimental crop biomass and gas flux (methane, nitrous oxide, and ammonia) data from continuous and intermittently flooded rice fields under different fertiliser treatments, India, July-October, 2016","topic":["0/Agriculture/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"This dataset contains rice crop biomass, and greenhouse gas flux measurements from five plots exposed to different fertiliser treatments and continuous and intermittent irrigation protocols. \n\nThe gas flux data include methane, nitrous oxide, and ammonia, which were..."},{"publicationDate":"2024-10-09T00:00:00.000+00:00","authorAffiliation":["Wild Asia","Universiti Putra Malaysia","IPB University","Sinar Mas Agro Resources and Technology Research Institute","UK Centre for Ecology & Hydrology","University of Cambridge","University of Oxford","University of  Nottingham"],"authorGivenName":["I.","A.J.","B. ","D.","J.-P.","J.","M.F.","P.","J.A.","S.H.","W.M.","M.","V.J.","Edgar C."],"authorFamilyName":["Barrock","Siti Zulaikah","Azhar","Bukhari","Caliman","Drewer","Harianja","Hidayat","Jones","Luke","Wan Zaki","Naim","Popkin","Reiss-Woolever","Stone","Turner"],"authorFullName":["Barrock, I.","Siti Zulaikah, A.J.","Azhar, B.","Bukhari, D.","Caliman, J.-.","Drewer, J.","Harianja, M.F.","Hidayat, P.","Jones, J.A.","Luke, S.H.","Wan Zaki, W.M.","Naim, M.","Popkin, M.","Reiss-Woolever, V.J.","Stone, J.","Turner, E.C."],"authorOrcid":["https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0003-2715-2234"],"authorRor":["https://ror.org/02e91jd64","https://ror.org/05smgpd89","https://ror.org/00pggkr55","https://ror.org/013meh722","https://ror.org/052gg0110","https://ror.org/01ee9ar58"],"catalogue":"eidc","description":"This dataset includes results from biodiversity, social and environmental surveys of 49 oil palm smallholders and farms in Perak, Malaysia. Biodiversity data includes sticky trap data on flying invertebrate abundance (identified to higher-level order), transect data on assassin bugs, Nephila spp. spiders and butterflies (identified to species), and data on mealworm removal from each plot. Environmental data includes soil temperature readings recorded over 24 hours, information on the size of the plot, crop type and cover, GPS location, vegetation cover, vegetation height, canopy density, epiphyte cover, soil pH, soil moisture, leaf litter depth, horizon depths, palm herbivory and palm health. Social data includes information (all anonymised) on plot area, number of palms, sociodemographic data, plantation management practices applied, knowledge and value assigned to wildlife, and yield. Data were collected from December 2021 to July 2022","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"grant":["BB/T012366/1"],"identifier":"189164db-fe83-4b3f-b572-2fe99faba2d1","incomingCitationCount":0,"givenName":["I.","A.J.","B. ","D.","J.-P.","J.","M.F.","P.","J.A.","S.H.","W.M.","M.","V.J.","Edgar C."],"familyName":["Barrock","Siti Zulaikah","Azhar","Bukhari","Caliman","Drewer","Harianja","Hidayat","Jones","Luke","Wan Zaki","Naim","Popkin","Reiss-Woolever","Stone","Turner"],"fullName":["Barrock, I.","Siti Zulaikah, A.J.","Azhar, B.","Bukhari, D.","Caliman, J.-.","Drewer, J.","Harianja, M.F.","Hidayat, P.","Jones, J.A.","Luke, S.H.","Wan Zaki, W.M.","Naim, M.","Popkin, M.","Reiss-Woolever, V.J.","Stone, J.","Turner, E.C."],"keyword":["Perak","Environmental survey","Soil","smallholder","vegetation","crop","social","oil palm"],"keywordsPlace":["Perak"],"keywordsTheme":["Environmental survey","Soil"],"keywordsOther":["smallholder","vegetation","crop","social","oil palm"],"licence":"Open government licence","lineage":"Biodiversity, environmental and social data were collected in a series of field campaigns, led by researchers from Wild Asia.\n\nBiodiversity data collection included standard transect walks of 100 m to record the abundance and activity of butterflies, as well as numbers of Assassin bugs and Nephila spiders within a 5 m x 5 m box in front of the recorder. At four points along the transect, separated by 20 m, we also recorded understory flying invertebrate abundance and predation. Clear plastic sheets smeared with glue were used as sticky traps, suspended 40 cm above the ground and facing south, to collect understory invertebrates. Sticky traps were collected after 24 hours. Sticky traps were photographed to allow later recording of invertebrate abundance. Cards with 6 dead meal worms attached and hung on palm trunks next to sample points were used to assess predation, by recording removal over 24 hours.\n\nEnvironmental data collection methods included visual inspection of plots to record the cover of different crop types and using handheld GPS units to record plantation boundaries and the size of plantations. At the same four sample points used to set pitfalls and sticky traps, we also made direct measurements of vegetation, palm and soil characteristics. These included field readings of canopy openness using a convex spherical densiometer, direct measures of vegetation height and cover (into categories by eye within a 3 m x 3 m area), and field measures of soil pH and moisture using a Suplong probe. We also scored height, health, % epiphyte cover on the trunk, and level of herbivory by eye on the closest palm to each point. We also dug small soil pits to assess leaf litter depth and then used a standard 10 cm deep and 5 cm diameter tube to collect soil samples. We also conducted a Visual Evaluation of Soil Structure (VESS) survey to measure the depth of soil horizons and associated characteristics, following standard methods.\n\nSocial data were collected through a mixture of telephone and face-to-face interviews with smallholders, at a time convenient to the smallholders. Some telephone interviews were necessary owing to the impacts of COVID. Ethical permission for interviews was gained from the University of Cambridge Department of Psychology ethics board before work took place, no information was withheld from participants and full written consent was obtained in advance.\n\nOn return to the lab, soil samples were weighed wet and then dried to a constant weight, allowing water content and soil compaction to be calculated. Sticky trap photos had insects counted and identified to order-level. \nData were entered digitally by field teams and returned to the University of Cambridge for quality and error checking, and to ensure a standard format.","locations":["POLYGON((100.568 5.159, 100.568 5.28, 100.788 5.28, 100.788 5.159, 100.568 5.159))"],"orcid":["https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0003-2715-2234"],"organisation":["Wild Asia","Universiti Putra Malaysia","IPB University","Sinar Mas Agro Resources and Technology Research Institute","UK Centre for Ecology & Hydrology","University of Cambridge","University of Oxford","University of  Nottingham","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/189164db-fe83-4b3f-b572-2fe99faba2d1","10.5285/189164db-fe83-4b3f-b572-2fe99faba2d1"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/02e91jd64","https://ror.org/05smgpd89","https://ror.org/00pggkr55","https://ror.org/013meh722","https://ror.org/052gg0110","https://ror.org/01ee9ar58","https://ror.org/04xw4m193"],"state":"published","title":"Socioecological data from smallholder oil palm plantations in Perak, Peninsular Malaysia, 2021-2022","topic":["0/Environmental survey/","0/Soil/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset includes results from biodiversity, social and environmental surveys of 49 oil palm smallholders and farms in Perak, Malaysia. Biodiversity data includes sticky trap data on flying invertebrate abundance (identified to higher-level order), transect data..."},{"publicationDate":"2024-08-23T00:00:00.000+00:00","authorAffiliation":["University of Liverpool","The Australian National University","Aarhus University","Netherlands Institute of Ecology","University of Leeds","University of Zurich","University of St Andrews","University of East Anglia","Universidade de Lisboa","Martin-Luther University Halle-Wittenberg","University of Bristol","University of Münster","Vrije Universiteit Amsterdam","University of Padova","University of Lincoln","Université de Rennes","The University of New South Wales","Stockholm University"],"authorGivenName":["F.","D. W. A.","M. F.","M.","J.","S.","A.","C. H.","B. J.","P.","I.","H.","B.","E.","Z. V.","G.","A. N.","N.","S A.","R. R.","T. A. R.","L. R."],"authorFamilyName":["Frost","Noble","Schou","Rowe","Rees","Lüpold","Chatten","Smithson","Cole","Simões","Lindenbaum","Koppik","Weaving","Canal Domenech","Churchill","Zizzari","Ellers","Gigliotti","Graziano","Iossa","De Nardo","Pilakouta","Meena","Ramm","Nakagawa","Bretman","Fricke","Snook","Price","Dougherty"],"authorFullName":["Frost, F.","Noble, D.W.A.","Schou, M.F.","Rowe, M.","Rees, J.","Lüpold, S.","Chatten, A.","Smithson, C.H.","Cole, B.J.","Simões, P.","Lindenbaum, I.","Koppik, M.","Weaving, H.","Canal Domenech, B.","Churchill, E.","Zizzari, Z.V.","Ellers, J.","Gigliotti, S.","Graziano, M.","Iossa, G.","De Nardo, A.N.","Pilakouta, N.","Meena, A.","Ramm, S.A.","Nakagawa, S.","Bretman, A.","Fricke, F.","Snook, R.R.","Price, T.A.R.","Dougherty, L.R."],"authorOrcid":["https://orcid.org/0000-0003-2382-2990","https://orcid.org/0000-0001-9460-8743","https://orcid.org/0000-0001-5521-5269","https://orcid.org/0000-0001-9747-041X","https://orcid.org/0009-0008-0212-2446","https://orcid.org/0000-0002-5069-1992","https://orcid.org/0009-0003-5378-0661","https://orcid.org/0000-0002-0032-8124","https://orcid.org/0000-0002-2747-2580","https://orcid.org/0000-0002-4253-1200","https://orcid.org/0000-0002-3433-7248","https://orcid.org/0000-0002-9093-0556","https://orcid.org/0000-0003-1447-5704","https://orcid.org/0000-0003-0910-8600","https://orcid.org/0000-0002-9945-3071","https://orcid.org/0000-0003-2665-1971","https://orcid.org/0009-0004-4726-8204","https://orcid.org/0000-0001-8850-9036","https://orcid.org/0000-0001-6813-4361","https://orcid.org/0000-0003-3708-1492","https://orcid.org/0000-0001-8503-520X","https://orcid.org/0000-0001-9731-3924","https://orcid.org/0000-0001-7786-7364","https://orcid.org/0000-0002-7765-5182","https://orcid.org/0000-0002-4421-3337","https://orcid.org/0000-0002-0691-6779","https://orcid.org/0000-0003-1852-1448","https://orcid.org/0000-0002-4394-6301","https://orcid.org/0000-0003-1406-0680"],"authorRor":["https://ror.org/04xs57h96","https://ror.org/019wvm592","https://ror.org/01aj84f44","https://ror.org/01g25jp36","https://ror.org/024mrxd33","https://ror.org/02crff812","https://ror.org/02wn5qz54","https://ror.org/026k5mg93","https://ror.org/01c27hj86","https://ror.org/05gqaka33","https://ror.org/0524sp257","https://ror.org/00pd74e08","https://ror.org/008xxew50","https://ror.org/03yeq9x20","https://ror.org/015m7wh34","https://ror.org/03r8z3t63","https://ror.org/05f0yaq80"],"catalogue":"eidc","description":"This dataset contains extracted data from studies reporting the effect of temperature on animal reproduction and adult lifespan. To identify studies, we performed a systematic literature search using the online database Web of Science in August 2021 (see Dougherty et al. (2024) for details). From this search, 781 studies were screened, and 339 studies met our inclusion criteria. These studies all experimentally manipulate temperature in a laboratory setting, usually for more than five days. The studies tested 308 species in total, all of which are invertebrates, mostly from the order Insecta (77%) or Arachnida (15%). \n\nFrom these studies we extracted reported data for the average reproductive output and adult lifespan (plus associated variances and sample sizes) for each tested temperature treatment. Means and variances were then converted into standardised effect sizes for further meta-analysis. We used the standardised mean difference (SMD) in reproduction or adult lifespan between pairwise temperature treatments as the effect size (response variable). SMDs were calculated in a pairwise fashion in relation to a single ‘reference’ treatment. The reference treatment was assigned as: a) the treatment closest to the rearing temperature of the study population, or b) the treatment with a temperature closest to 25℃ (in the absence of a reported rearing temperature).\n\nFor each effect size, we also report information relating to the focal species (e.g. taxonomic group, focal sex, habitat, fertilisation mode) and relevant methodological details (e.g. experimental temperature, exposure duration, which life stage was exposed).\n\nThe dataset consists of all data needed to repeat the meta-analyses: two csv files containing extracted effect size data, and two phylogenetic trees showing the relationships between the species included in the analysis.\n\nThis work was funded by the Natural Environment Research Council (NE/X011550/1 & NE/P002692/1), the Biotechnology and Biological Sciences Research Council (BB/W016753/1), the Australian Research Council (Future Fellowship FT220100276), the German Research Foundation (DFG, Heisenberg fellowship FR 2973/11-1), and the European Society for Evolutionary Biology.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Australian Research Council","German Research Foundation","European Society for Evolutionary Biology"],"grant":["NE/P002692/1","NE/X011550/1","BB/W016753/1","FT220100276","FR 2973/11-1"],"identifier":"59abe798-1b39-4555-b3a6-8c301a61bcaa","incomingCitationCount":1,"givenName":["F.","D. W. A.","M. F.","M.","J.","S.","A.","C. H.","B. J.","P.","I.","H.","B.","E.","Z. V.","G.","A. N.","N.","S A.","R. R.","T. A. R.","L. 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(2024). We searched this database for any studies which reported temperature effects on both reproduction and longevity/survival of the same species. We then extracted all relevant effect size data from these papers. Altogether, we extracted data from 339 studies and for 308 invertebrate species.","orcid":["https://orcid.org/0000-0003-2382-2990","https://orcid.org/0000-0001-9460-8743","https://orcid.org/0000-0001-5521-5269","https://orcid.org/0000-0001-9747-041X","https://orcid.org/0009-0008-0212-2446","https://orcid.org/0000-0002-5069-1992","https://orcid.org/0009-0003-5378-0661","https://orcid.org/0000-0002-0032-8124","https://orcid.org/0000-0002-2747-2580","https://orcid.org/0000-0002-4253-1200","https://orcid.org/0000-0002-3433-7248","https://orcid.org/0000-0002-9093-0556","https://orcid.org/0000-0003-1447-5704","https://orcid.org/0000-0003-0910-8600","https://orcid.org/0000-0002-9945-3071","https://orcid.org/0000-0003-2665-1971","https://orcid.org/0009-0004-4726-8204","https://orcid.org/0000-0001-8850-9036","https://orcid.org/0000-0001-6813-4361","https://orcid.org/0000-0003-3708-1492","https://orcid.org/0000-0001-8503-520X","https://orcid.org/0000-0001-9731-3924","https://orcid.org/0000-0001-7786-7364","https://orcid.org/0000-0002-7765-5182","https://orcid.org/0000-0002-4421-3337","https://orcid.org/0000-0002-0691-6779","https://orcid.org/0000-0003-1852-1448","https://orcid.org/0000-0002-4394-6301","https://orcid.org/0000-0003-1406-0680"],"organisation":["University of Liverpool","The Australian National University","Aarhus University","Netherlands Institute of Ecology","University of Leeds","University of Zurich","University of St Andrews","University of East Anglia","Universidade de Lisboa","Martin-Luther University Halle-Wittenberg","University of Bristol","University of Münster","Vrije Universiteit Amsterdam","University of Padova","University of Lincoln","Université de Rennes","The University of New South Wales","Stockholm University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/59abe798-1b39-4555-b3a6-8c301a61bcaa","10.5285/59abe798-1b39-4555-b3a6-8c301a61bcaa"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Liverpool"],"ror":["https://ror.org/04xs57h96","https://ror.org/019wvm592","https://ror.org/01aj84f44","https://ror.org/01g25jp36","https://ror.org/024mrxd33","https://ror.org/02crff812","https://ror.org/02wn5qz54","https://ror.org/026k5mg93","https://ror.org/01c27hj86","https://ror.org/05gqaka33","https://ror.org/0524sp257","https://ror.org/00pd74e08","https://ror.org/008xxew50","https://ror.org/03yeq9x20","https://ror.org/015m7wh34","https://ror.org/03r8z3t63","https://ror.org/05f0yaq80","https://ror.org/04xw4m193"],"state":"published","title":"Reproductive output and adult lifespan of 308 invertebrate species subjected to temperature variations, from a meta-analysis of published literature","topic":["0/Phenology/","0/Biodiversity/","0/Evolutionary ecology/","0/Animal behaviour/","0/Climate and climate change/"],"version":1.0,"view":["public","rafbar"],"shortenedDescription":"This dataset contains extracted data from studies reporting the effect of temperature on animal reproduction and adult lifespan. 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At four points distributed across the plantation and separated by 20m, we also made direct measurements of vegetation, palm and soil characteristics. These included field readings of canopy openness using a convex spherical densiometer, direct measures of vegetation height and cover (into categories by eye within a 3m x3m area), and field measures of soil pH and moisture using a Suplong probe. We also scored height, health, % epiphyte cover on the trunk, and level of herbivory by eye on the closest palm to each point. We also measured leaf litter depth.\n\nSocial data were collected through face to face interviews with smallholders, at a time convenient to the smallholders. Ethical permission for interviews were gained from the University of Cambridge Department of Psychology ethics board before work took place, no information was withheld from participants and full written consent was obtained in advance.\n\nData were entered digitally by field teams and returned to the University of Cambridge for quality and error checking, and to ensure a standard format.\n","locations":["POLYGON((101.282 2.387, 101.282 3.038, 101.861 3.038, 101.861 2.387, 101.282 2.387))"],"orcid":["https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-1020-9161","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2715-2234"],"organisation":["Universiti Putra Malaysia","University of Cambridge","Wild Asia","IPB University, Bogor","Sinar Mas Agro Resources and Technology Research Institute","UK Centre for Ecology & Hydrology","IPB University","University of Oxford","Nottingham University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/81b02484-a87e-4a49-baba-678654059091","10.5285/81b02484-a87e-4a49-baba-678654059091"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/02e91jd64","https://ror.org/013meh722","https://ror.org/05smgpd89","https://ror.org/00pggkr55","https://ror.org/052gg0110","https://ror.org/01ee9ar58","https://ror.org/04xw4m193"],"state":"published","title":"Socioecological data from smallholder oil palm plantations in Selangor, Peninsular Malaysia, 2022","version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset includes results from social and environmental surveys of 27 oil palm smallholders and farms in Selangor, Malaysia. Environmental data includes: information on size of plot, crop type and cover, GPS location, vegetation cover, vegetation height, canopy..."},{"publicationDate":"2022-04-29T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government"],"grant":["NE/K012177/1","BB/L012243/1"],"identifier":"f463bc5c-bb79-4967-a8dc-f662f57f7020","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Phenology","Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth"],"keywordsTheme":["Phenology"],"keywordsOther":["Pinus sylvestris","Scots pine","Caledonian pinewood","Adaptive trait variation","Phenotype","Common garden experiment","Growth"],"licence":"Open government licence","lineage":"A multi-site field trial was established at three sites in Scotland in 2012 using five year old Scots pine trees. Each site contains 8 families from each of 21 native Caledonian pinewood provenances. Two of the sites (FE and FS) have four randomised blocks and the other (FW) has three randomised blocks.\nTree height and basal stem diameter were measured at the end of each growing season from 2013 to 2020 for trees growing at two of the field sites (FE and FW) and in 2020 for trees growing at the third (FS). \nPhenology assessments were performed in spring at each site from 2015 to 2019 (the survey was not completed in 2020 due to the COVID-19 pandemic).\n","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","The James Hutton Institute","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f463bc5c-bb79-4967-a8dc-f662f57f7020","10.5285/f463bc5c-bb79-4967-a8dc-f662f57f7020"],"resourceStatus":"Superseded","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: field phenotypes, 2013-2020","topic":["0/Phenology/"],"version":1.0,"view":["public","matnic"],"shortenedDescription":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020."},{"publicationDate":"2021-04-08T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["N."],"authorFamilyName":["Cowan"],"authorFullName":["Cowan, N."],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Data from 38 experimental sites across the UK and Ireland were collated resulting in 623 separate mineral fertiliser N2O emission factors (EF) estimates derived from field measurements. Data were either i) extracted from published studies in which one aim of the experimentation was to explicitly measure N2O and report EFs after a mineral fertiliser application, or ii) raw data were used from the Agricultural and Environmental Data Archive (AEDA).\n\nTo find the published data, a survey of literature was conducted using Google Scholar for articles considered ‘recent’ (20 years or fewer), i.e. published after January 1998 and submitted before April 2019. The following search terms and their variations were used: N2O, nitrous oxide, emission factor, mineral fertiliser, ammonium nitrate, urea, nitrification inhibitor, nitrogen use efficiency, agriculture, greenhouse gas, grassland and arable. This search based on keywords was complemented with a search through the literature cited in the articles found and known previous research.","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council","Natural Environment Research Council"],"grant":["BB/N013468/1","NE/S003614/1"],"identifier":"9948d1b9-caa1-4894-93e6-cc0f4326fced","incomingCitationCount":1,"givenName":["N."],"familyName":["Cowan"],"fullName":["Cowan, N."],"keyword":["Agriculture","ammonium nitrate","nitrous oxide","urea","N2O","nitrification inhibitor","nitrogen use efficiency","greenhouse gas","arable farming","grassland","agriculture","mineral fertiliser","nitrogen oxides","nitrification","emission factor"],"keywordsTheme":["Agriculture"],"keywordsOther":["ammonium nitrate","nitrous oxide","urea","N2O","nitrification inhibitor","nitrogen use efficiency","greenhouse gas","arable farming","grassland","agriculture","mineral fertiliser","nitrogen oxides","nitrification","emission factor"],"licence":"Open government licence","lineage":"Raw data extracted from the Agricultural and Environmental Data Archive (AEDA) was used to calculate emission factors  (EFs) for 25 days after fertiliser application using the log-normal Bayesian approach as described in Levy et al., 2017, Cowan et al., 2019a, which accounts for the log-normal spatial and temporal distribution of N2O fluxes after fertiliser events. Fertilisers treated with nitrification and urease inhibitors in these studies were included for comparison.","locations":["POLYGON((-10.757 49.864, -10.757 60.861, 1.768 60.861, 1.768 49.864, -10.757 49.864))"],"organisation":["UK Centre for Ecology & Hydrology","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9948d1b9-caa1-4894-93e6-cc0f4326fced","10.5285/9948d1b9-caa1-4894-93e6-cc0f4326fced"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["\n"],"supplementalName":["Levy, P.E., Cowan, N., van Oijen, M., Famulari, D., Drewer, J., Skiba, U., 2017. Estimation of cumulative fluxes of nitrous oxide: uncertainty in temporal upscaling and emission factors. European Journal of Soil Science 68, 400–411."],"title":" Nitrous oxide emission factors of mineral fertilisers in the UK and Ireland (1999-2019)","topic":["0/Agriculture/"],"version":1.0,"view":["public","crimar"],"shortenedDescription":"Data from 38 experimental sites across the UK and Ireland were collated resulting in 623 separate mineral fertiliser N2O emission factors (EF) estimates derived from field measurements. Data were either i) extracted from published studies in which one aim of the experimentation..."},{"publicationDate":"2022-10-11T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744"],"catalogue":"eidc","description":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Scottish Government"],"grant":["NE/K012177/1","BB/L012243/1"],"identifier":"1c9367fb-ea87-47a1-8257-d9fed54215e7","incomingCitationCount":0,"givenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"familyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"fullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"keyword":["Phenology","Pinus sylvestris","Scots pine","Caledonian pinewood","adaptive trait variation","phenotype","common garden experiment","growth","phenology","tree"],"keywordsTheme":["Phenology"],"keywordsOther":["Pinus sylvestris","Scots pine","Caledonian pinewood","adaptive trait variation","phenotype","common garden experiment","growth","phenology","tree"],"licence":"Open government licence","lineage":"A multi-site field trial was established at three sites in Scotland in 2012 using five year old Scots pine trees. Each site contains 8 families from each of 21 native Caledonian pinewood provenances. Two of the sites (FE and FS) have four randomised blocks and the other (FW) has three randomised blocks.\n\nTree height and basal stem diameter were measured at the end of each growing season from 2013 to 2020 for trees growing at two of the field sites (FE and FW) and in 2020 for trees growing at the third (FS). \n\nPhenology assessments were performed in spring at each site from 2015 to 2019 (the survey was not completed in 2020 due to the COVID-19 pandemic).\n","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre","The James Hutton Institute"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1c9367fb-ea87-47a1-8257-d9fed54215e7","10.5285/1c9367fb-ea87-47a1-8257-d9fed54215e7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Forest Research","The James Hutton Institute"],"ror":["https://ror.org/00pggkr55","https://ror.org/03rzp5127","https://ror.org/03wcc3744","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: field phenotypes, 2013-2020, version 2","topic":["0/Phenology/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"Phenotypes (growth and phenology) for Scots pine trees in a long-term common garden trial planted in three sites in Scotland, surveyed annually from 2013 to 2020."},{"publicationDate":"2022-08-17T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research"],"authorGivenName":["A.","J.K.","J.A.","J.E.","G.R.","S."],"authorFamilyName":["Perry","Beaton","Stockan","Cottrell","Iason","Cavers"],"authorFullName":["Perry, A.","Beaton, J.K.","Stockan, J.A.","Cottrell, J.E.","Iason, G.R.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Phenotypes for Scots pine mother trees and their cones/seed from 21 populations across Scotland in 2007. 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Phenotypes (including height, DBH, soil depth, competition and altitude) were recorded for each mother tree. The size and weight of cones (10 per mother tree) and seeds (all seeds within each cone: total number of viable seeds, percentage viability and weight of viable seeds) were also recorded.","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-9900-9010","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","James Hutton Institute","Forest Research","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8a86cb01-46d5-4620-a2be-c15c7616fbe8","10.5285/8a86cb01-46d5-4620-a2be-c15c7616fbe8"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term multisite Scots pine trial, Scotland: mother tree, cone and seed phenotypes, 2007 v2","version":1.0,"view":["public","clwe"],"shortenedDescription":"Phenotypes for Scots pine mother trees and their cones/seed from 21 populations across Scotland in 2007. The seed was used to establish a long-term multisite common garden trial at three nurseries/field sites"},{"publicationDate":"2019-04-25T00:00:00.000+00:00","authorAffiliation":["Bangor University","Rothamsted Research","Centre for Ecology & Hydrology"],"authorGivenName":["A.R.","A.M.","J.M.","D.R.","D.L.","T.H.","K.S.","S."],"authorFamilyName":["Sánchez-Rodríguez","Carswell","Cotton","Chadwick","Jones","Misselbrook","Saunders","Reinsch"],"authorFullName":["Sánchez-Rodríguez, A.R.","Carswell, A.M.","Cotton, J.M.","Chadwick, D.R.","Jones, D.L.","Misselbrook, T.H.","Saunders, K.S.","Reinsch, S."],"authorOrcid":["https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0003-4649-0677"],"authorRor":["https://ror.org/006jb1a24","https://ror.org/0347fy350","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"The data contains nitrogen (N) offtake, N emissions (ammonia and nitrous oxide), soil parameters (pH, EC, NH4+, NO3−), biomass and grain production from a winter wheat field experiment located at Bangor University (Henfaes Research Station in North Wales) and Rothamsted Research (North Wyke (NW) in Devon). Data were collected between  April 2017 and August 2017. Measurements and soil and plant samples were taken from 45 plots in a randomized complete block design. Sixteen extra mini-plots at the prevailing wind (south westerly) edge of the experiment site were used at NW for NH3 volatilization measurements. The treatments were control (C, without N application), food based digestate (D), food based digestate + the nitrification inhibitor 3,4-dimethylpyrazole (DMPP; D+NI), acidified food based digestate (AD), acidified food based digestate + the nitrification inhibitor 3,4-dimethylpyrazole (DMPP; AD+NI). Four rates of ammonium nitrate (NH4NO3; 75, 150, 225 and 300 kg N ha−1)  were applied to compare yields and fertilizer replacement rate of the digestate treatments (targeted at 190 kg N  ha−1). Soil pH, soil electrical conductivity (EC), soil NH4+ and soil NO3−, NH3 volatilization, N2O emissions were measured periodically for C, D, D+NI, AD and AD+NI and nitrogen concentration in grain and straw, grain yield and plant biomass for all treatments.\n\nNitrogen offtake, losses and fluxes were used to determine the N use efficiency (NUE) and fertilizer replacement rate of the digestate treatments.\n\nMeasurements were undertaken by members of staff from Bangor University, School of Environment, Natural Resources & Geography and Rothamsted Research, Sustainable Agricultural Sciences – North Wyke.\n\nData was collected for the Newton Fund project “UK-China Virtual Joint Centre for Improved Nitrogen Agronomy”. Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC -  Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"836dfb2e-bc6f-47d2-b924-8261be671391","incomingCitationCount":0,"givenName":["S.","A.R.","A.M.","J.M.","D.R.","D.L.","T.H.","K.S."],"familyName":["Reinsch","Sánchez-Rodríguez","Carswell","Cotton","Chadwick","Jones","Misselbrook","Saunders"],"fullName":["Reinsch, S.","Sánchez-Rodríguez, A.R.","Carswell, A.M.","Cotton, J.M.","Chadwick, D.R.","Jones, D.L.","Misselbrook, T.H.","Saunders, K.S."],"keyword":["CINAg","CENTRE FOR IMPROVED NITROGEN AGRONOMY","Land use","Soil","Agriculture","nitrification inhibitor","digestate","Nitrogen use efficiency (NUE)","nitrogen","fertiliser","nitrification","winter wheat"],"keywordsProject":["CINAg","CENTRE FOR IMPROVED NITROGEN AGRONOMY"],"keywordsTheme":["Land use","Soil","Agriculture"],"keywordsOther":["nitrification inhibitor","digestate","Nitrogen use efficiency (NUE)","nitrogen","fertiliser","nitrification","winter wheat"],"licence":"Open government licence","lineage":"Cumulative ammonia (NH3) emissions were measured using a wind tunnel technique (with 0.02 M H3PO4 acid traps) at a daily resolution for seven days following digestate application, except the first day where NH3 volatilization was measured twice at Henfaes Farm and three times at North Wyke.\n\nNitrous oxide emissions were measured using a combination of static manual and static automatic (combined with an Isotopic  Nitrous Oxide (N2O) Analyser, Los Gatos Research Inc. San Jose, CA, USA) chambers at Henfaes Farm, and only static manual chambers at North Wyke. Using the manual static chambers, the resolution of Nitrous Oxide (N2O) measurements following Nitrogen (N) fertiliser application was 3 x weekly for weeks 1 and 2, 2 x weekly for weeks 3 and 4, and 1 x weekly thereafter. Using the automatic static chambers, the resolution of N2O measurements following N fertiliser application was approximately every six hours.\n\nSamples for soil ammonium (NH4+) and nitrate (NO3−) analyses were collected at the same temporal resolution as the N2O sampling using manual static chambers.\n\nWinter wheat yield and biomass measurements were done the day of harvest (fresh weight) and subsamples were used to determine grass and grain moisture after 24 hours at 80 degrees Celsius.\n\nAll results were entered into Excel spreadsheets providing individual datasets for each set of N parameters. Data were exported from Excel as .csv files for ingestion into the EIDC.","locations":["POLYGON((-4.022 50.767, -4.022 53.241, -3.892 53.241, -3.892 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0002-4594-3606"],"organisation":["UK Centre for Ecology & Hydrology","Bangor University","Rothamsted Research","Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/836dfb2e-bc6f-47d2-b924-8261be671391","10.5285/836dfb2e-bc6f-47d2-b924-8261be671391"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/0347fy350","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Project website"],"supplementalName":["THE UK-CHINA VIRTUAL JOINT CENTRE FOR IMPROVED NITROGEN AGRONOMY (CINAG)"],"title":"Greenhouse gas emissions, nitrogen use efficiency and biomass from digestate experiments on winter wheat at North Wyke and Henfaes, UK (2017)","topic":["0/Land use/","0/Soil/","0/Agriculture/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"The data contains nitrogen (N) offtake, N emissions (ammonia and nitrous oxide), soil parameters (pH, EC, NH4+, NO3−), biomass and grain production from a winter wheat field experiment located at Bangor University (Henfaes Research Station in North Wales) and Rothamsted..."},{"publicationDate":"2019-04-24T00:00:00.000+00:00","authorAffiliation":["Rothamsted Research","Centre for Ecology & Hydrology","Bangor University"],"authorGivenName":["A.","M.","I.M.","P.R.","R.I.","T.I.","A.M.","T.H.","R.","A.R.","D.R.","D.L.","N.J.","U.","S."],"authorFamilyName":["Blaud","Abadie","Clark","Hirsch","Griffiths","Goodall","Carswell","Misselbrook","Shaw","Sánchez-Rodríguez","Chadwick","Jones","Cowan","Skiba","Reinsch"],"authorFullName":["Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Griffiths, R.I.","Goodall, T.I.","Carswell, A.M.","Misselbrook, T.H.","Shaw, R.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L.","Cowan, N.J.","Skiba, U.","Reinsch, S."],"authorOrcid":["https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0001-8659-6092","https://orcid.org/0000-0003-4649-0677"],"authorRor":["https://ror.org/0347fy350","https://ror.org/00pggkr55","https://ror.org/006jb1a24"],"catalogue":"eidc","description":"The data nitrogen gene data, soil biodiversity indices and microbial community composition, for three soil depths (0-15, 15-30 and 30-60 cm) from a three-cut silage plot trial located at three grassland sites within the UK collected between April 2016 and October 2016. The sites were Rothamsted Research at North Wyke in Devon, Bangor University at Henfaes Research Station in North Wales and Easter Bush in Scotland.\n\nAt each site measurements were taken from 16 plots, organised within a randomised complete block design where 4 plots did not receive fertilizers (controls), 4 plots received urea only, 4 plots received urea and urea-inhibitors, and 4 plots received ammonium-nitrate (Nitram). Fertiliser was applied three times and three cuts were performed, all parameters measured were following a fertiliser application. Samples were taken before the fertilizer additions, at peak growth and before the last silage cut.\n\nSoil chemical parameters were: soil nitrate, ammonium, dissolved organic carbon and nitrogen, amino acids and peptides, soil organic matter content as loss-on-ignition, pH, sodium, potassium, calcium, magnesium, permanganate oxdisable carbon citric acid extractable phosphorous, Olsen-P and total carbon, nitrogen and phosphorus. Soil biological measure were: microbial biomass carbon and nitrogen. Soil physico-chemical parameters were measured on the same samples and are available in a related dataset measured on the same soil samples and are presented in a separate dataset in the project data series (https://catalogue.ceh.ac.uk/id/7a87dde4-b54e-49b0-8751-1d59e8aebb90).\n\nMeasurements were undertaken by members of staff from the Centre of Ecology & Hydrology (Bangor, Edinburgh, Lancaster, Wallingford), Bangor University, School of Environment, Natural Resources & Geography and Rothamsted Research, Sustainable Agricultural Sciences, North Wyke.\n\nData was collected for the Newton Fund project \"UK-China Virtual Joint Centre for Improved Nitrogen Agronomy\". Funded by Biotechnology and Biological Sciences Research Council (BBSRC) and NERC -  Ref BB/N013468/1","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/N013468/1"],"identifier":"59f81d41-a789-4c5c-8ab8-36baa7ac2c55","incomingCitationCount":0,"givenName":["S.","A.","M.","I.M.","P.R.","R.I.","T.I.","A.M.","T.H.","R.","A.R.","D.R.","D.L.","N.J.","U."],"familyName":["Reinsch","Blaud","Abadie","Clark","Hirsch","Griffiths","Goodall","Carswell","Misselbrook","Shaw","Sánchez-Rodríguez","Chadwick","Jones","Cowan","Skiba"],"fullName":["Reinsch, S.","Blaud, A.","Abadie, M.","Clark, I.M.","Hirsch, P.R.","Griffiths, R.I.","Goodall, T.I.","Carswell, A.M.","Misselbrook, T.H.","Shaw, R.","Sánchez-Rodríguez, A.R.","Chadwick, D.R.","Jones, D.L.","Cowan, N.J.","Skiba, U."],"keyword":["CINAg","Centre for improved Nitrogen agronomy","Soil","Urease Inhibitor","Soil properties","grassland","nitrogen","fertiliser","soil"],"keywordsProject":["CINAg","Centre for improved Nitrogen agronomy"],"keywordsTheme":["Soil"],"keywordsOther":["Urease Inhibitor","Soil properties","grassland","nitrogen","fertiliser","soil"],"licence":"Open government licence","lineage":"Soil samples were taken by members of the sites. At North Wyke and Henfaes farm, staff from CEH Bangor helped taking the samples. Two sets of soil cores were taken. One was sent in cooling boxes on ice to CEH Bangor for measuring soil physicochemical properties. The second set was sent to Rothamsted Research Harpenden for the analysis of nitrogen genes and microbial community composition (related dataset). The topsoil 0-15 cm were taken with the same type of corer across the sites, samples below 15 cm soil depth were sampled with corers available at the sites. Samples were wet sieved to 5 mm by staff from Bangor University and CEH Bangor. Subsamples of these were analysed for physicochemical and biological parameters.\n\nDNA extractions were performed by Rothamsted Research Harpenden. Extracts were analyzed for nitrogen genes at Rothamsted Research in Harpenden. Extracts were also sent to CEH Wallingford for analyses of Operational Taxonomic Units (OTU's).\n\nSoil community DNA was extracted from 0.25 gams soil using the MoBio DNA PowerSoil DNA isolation kit (Mo Bio Laboratories, Inc. Carlsbad, CA), following manufacturer’s protocol. Extracted DNA was quantified by fluorometer Qubit® 2.0 dsDNA BR Assay Kit (Thermo Fisher Scientific) and quality checked by nanodrop (Thermo Fisher Scientific).\n\nQuantitative-polymerase chain reaction (qPCR) protocols were as detailed in De Sosa et al. 2018.\n\nMicrobial nitrogen cycling gene abundance was investigated by qPCR targeting specific genes or genetic regions. Bacterial and archaeal communities were targeted via the 16S rRNA genes, while the fungal community abundance was targeted by the ITS region. The different genes involved in soil nitrogen cycling were investigated: \n•\tNitrogen fixation (nifH gene)\n•\tNitrification by targeting the ammonia oxidising bacteria (AOB) and archaea (AOA) (amoA gene)\n•\tDenitrifiers via the nitrite reductase (nirK and nirS genes) and the nitrous oxide reductase (nosZ genes clade I and II)\n•\tDegradation of urea was also assessed by targeting the ureC gene\n\nqPCR amplifications were performed in 10 μL volumes containing 5 μL of QuantiFast (Qiagen, Manchester, UK), 2.8 μL of nuclease-free water (Severn Biotech, Kidderminster, UK), 0.1 μL of each primer (1 μM) and 2 μL of template DNA at 5 ng μL−1, using a CFX384 Touch® Real-Time PCR Detection System (Bio-Rad, Hemel Hempstead, UK). \n\nStandards for each molecular target were obtained using a 10 fold serial dilution of PCR products amplified from an environmental reference DNA (also used as positive control) and purified by gel extraction using the Wizard® SV Gel and PCR Clean Up System (Promega, Southampton, UK) following the manufacturer's instruction and quantified by fluorometer Qubit® 2.0 dsDNA BR Assay Kit (Thermo FisherScientific). \n\nStandard curve template DNA and the negative/positive controls were amplified in triplicate. Amplification conditions for all qPCR assays consisted in 2 steps: first denaturation at 95 degrees Celsius for 5 minutes followed by 40 cycles at 95 degrees Celsius for 10 seconds and 60 degrees Celsius for 30 seconds that included annealing, elongation and reading. Each amplification was followed by melting curve (increase in temperature from 60 degrees Celsius to 95 degrees Celsius, with a reading every 0.5degrees Celsius) to assess the specificity of each assay.\n\nThe efficiency of the qPCR varied between 85.2 percent and 95.9 percent (except nozII 74.4 percent, amplicon 746 bp long), and R2 between 0.987 and 0.999. The melting curves showed specificity for all the genes, except as expected for the fungal Internal Transcribed Spacer (ITS), that showed the amplification of products of different lengths, due to the variability in length of the ITS region between different fungal taxa (Manter and Vivanco, 2007).\n\nMicrobial diversity indices:\nExtracted DNA was supplied from Rothamsted Research in Harpenden (see section 5.4.13 in main supporting document) for amplicon sequencing at the facilities of the Molecular Ecology Group, Centre for Ecology & Hydrology, Wallingford. <50 μL volumes of DNA extract were supplied in 96-well plate format, these were subject to:\n•\t16S rRNA amplicon sequencing as per Kozich 2013 (Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform), utilising V3-V4 region primers\n•\tITS rRNA amplicon sequencing employing the Kozich 2013 strategy, utilizing ITS primers by Ihrmark 2012 (New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities)\n\nAmplicons were sequenced on Illumina MiSeq platform with V3 chemistry. Resulting sequences were demultiplexed using Illumina Basespace. 16S amplicons were processed using in-house developed pipelines for quality filtering, merging and taxonomic assignment (GreenGenes database) of operational taxonomic units (OTUs). ITS amplicons were processed using the R package Dada2 for quality filtering, merging. \nR package Vegan was used to analyse amplicon sequences. Bacterial and fungal Shannon’s Index diversity scores for each sample were produced from rarefied data using diversity function. Species richness for each sample were similarly produced using ‘specnumber’ function.\n\nBacterial phylum level frequencies were produced from taxonomically identified OTU sequences (using Greengenes database), these values are a percentage of the rarefied total.\n\nAll results were entered into CSV spreadsheet.","locations":["POLYGON((-4.022 50.767, -4.022 55.873, -3.191 55.873, -3.191 50.767, -4.022 50.767))"],"orcid":["https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-0860-8080","https://orcid.org/0000-0002-1589-5420","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-0580-6698","https://orcid.org/0000-0002-4594-3606","https://orcid.org/0000-0001-8734-2035","https://orcid.org/0000-0002-1482-4209","https://orcid.org/0000-0001-8659-6092"],"organisation":["UK Centre for Ecology & Hydrology","Rothamsted Research","Centre for Ecology & Hydrology","Bangor University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/59f81d41-a789-4c5c-8ab8-36baa7ac2c55","10.5285/59f81d41-a789-4c5c-8ab8-36baa7ac2c55"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/006jb1a24","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Manter, D. K., & Vivanco, J. M. (2007). Use of the ITS primers, ITS1F and ITS4, to characterize fungal abundance and diversity in mixed-template samples by qPCR and length heterogeneity analysis. Journal of Microbiological Methods, 71(1), 7–14.","Kozich, J.J., Westcott, S.L., Baxter, N.T., Highlander, S.K., & Schloss, P.D. (2013). Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform. Applied and Environmental Microbiology, 79(17), 5112–5120.","de Sosa, L.L., Glanville, H.C., Marshall, M.R., Schnepf, A., Cooper, D.M., Hill, P.W., … Jones, D.L. (2018). Stoichiometric constraints on the microbial processing of carbon with soil depth along a riparian hillslope. Biology and Fertility of Soils, 54(8), 949–963. "],"supplementalName":["Kozich 2013 ","GreenGenes database","The UK-China Virtual Joint Centre for Improved Nitrogen Agronomy (CINAG)"],"title":"Soil biological properties from an inorganic fertiliser (grass trial) experiment at North Wyke, Henfaes Farm and Easter Bush, UK (2016)","topic":["0/Soil/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"The data nitrogen gene data, soil biodiversity indices and microbial community composition, for three soil depths (0-15, 15-30 and 30-60 cm) from a three-cut silage plot trial located at three grassland sites within the UK collected between April 2016 and October 2016...."},{"publicationDate":"2019-07-23T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Rothamsted Research","Butterfly Conservation"],"authorGivenName":["C.A.","J.R.","D.","M.S.","R.","N.J.B.","D.B.","C.R."],"authorFamilyName":["Harrower","Bell","Blumgart","Botham","Fox","Isaac","Roy","Shortall"],"authorFullName":["Harrower, C.A.","Bell, J.R.","Blumgart, D.","Botham, M.S.","Fox, R.","Isaac, N.J.B.","Roy, D.B.","Shortall, C.R."],"authorOrcid":["https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0003-1640-6120","https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0001-6992-3522","https://orcid.org/0000-0002-4869-8052","https://orcid.org/0000-0002-5147-0331","https://orcid.org/0000-0002-7175-5393"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/05jg03a59"],"catalogue":"eidc","description":"The dataset contains national trends for 432 species of moths (mostly macro-moths) estimated using the moth data collected by Rothamsted Insect Survey (RIS) from their national light-trap network between the years 1968 and 2016. The trends were calculated using a Generalised Abundance Index (GAI) model. The trends are presented as year coefficients from the statistical model, Annual Growth Rates (AGR), and the total percentage changes over the whole time series. For each trend metric 95% and 90% confidence intervals are also provided. The dataset additionally contains a related set of trends produced specifically for the Atlas of Britain & Ireland’s Larger Moths which used a restricted subset of the data from UK analysis, specifically only using data from traps in Great Britain and only data from 1970 and 2016.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"grant":["NE/N018125/1","BBS/E/C/000J0200"],"identifier":"e7e0e4ad-f8c1-46fc-85b5-6d88057024b8","incomingCitationCount":2,"givenName":["C.A.","J.R.","D.","M.S.","R.","N.J.B.","D.B.","C.R."],"familyName":["Harrower","Bell","Blumgart","Botham","Fox","Isaac","Roy","Shortall"],"fullName":["Harrower, C.A.","Bell, J.R.","Blumgart, D.","Botham, M.S.","Fox, R.","Isaac, N.J.B.","Roy, D.B.","Shortall, C.R."],"keyword":["ASSIST","Biodiversity","Environmental survey"],"keywordsProject":["ASSIST"],"keywordsTheme":["Biodiversity","Environmental survey"],"licence":"Open government licence","lineage":"The Rothamsted light-trap network is a network of standardised light-traps that are operated throughout the year by volunteers. Using standardised traps means that the data from different sites and/or times are directly comparable. Although for the majority of species the time period of the data used in the analysis was 1968-2016, there was a handful of species of species where the time period had to be modified due taxonomic or data issues. For example the time period used for many pug species in the analysis was 1986 onwards due to inconsistency in the identification of these species in earlier years through a lack of suitable identification resources such as field guides. A few other species had initial years excluded due to data issues in those earlier years.\n\nThe GAI methodology is a two-step statistical method designed to analyse count data for taxa showing seasonal patterns in abundance, such as Butterflies and Moths. The first step uses statistical models, in this case generalised additive models (GAMs) with a smoothing spline, to estimate annual flight curves for each species.  The second stage takes these annual flight curves and uses them to correct for seasonal gaps in recording, producing estimated annual abundance indices for each site (site indices), to which a Poisson general linear model (GLM) is fitted allowing to the year and sites effects upon the site. The year coefficient from these GLMs are one of the measures of the temporal abundance trend presented in this data. In addition to the coefficient itself two additional metrics of temporal trend were estimated and are presented here, specifically the Annual Growth Rate (AGR) and the total percentage change over the time series for each species. Confidence intervals on the trend metrics were determined by bootstrapping (1000 replicates).\n\nThe research was primarily funded by Natural Environment Research Council (NERC) and the Biotechnology and Biological Sciences Research Council (BBSRC) under research programme NE/N018125/1 LTS-M ASSIST – Achieving Sustainable Agricultural Systems. The Rothamsted Insect Survey, a National Capability, is funded by the BBSRC under the Core Capability Grant BBS/E/C/000J0200. The research builds upon model development supported by NERC award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0003-1640-6120","https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0001-6992-3522","https://orcid.org/0000-0002-4869-8052","https://orcid.org/0000-0002-5147-0331","https://orcid.org/0000-0002-7175-5393"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","Rothamsted Research","Butterfly Conservation","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e7e0e4ad-f8c1-46fc-85b5-6d88057024b8","10.5285/e7e0e4ad-f8c1-46fc-85b5-6d88057024b8"],"resourceStatus":"Superseded","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/05jg03a59","https://ror.org/04xw4m193"],"state":"published","title":"UK moth trends from Rothamsted Insect Survey light-trap network (1968 to 2016)","topic":["0/Biodiversity/","0/Environmental survey/"],"version":1.0,"view":["public","hajd"],"shortenedDescription":"The dataset contains national trends for 432 species of moths (mostly macro-moths) estimated using the moth data collected by Rothamsted Insect Survey (RIS) from their national light-trap network between the years 1968 and 2016. The trends were calculated using a Generalised..."},{"publicationDate":"2020-04-20T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Rothamsted Research","Butterfly Conservation"],"authorGivenName":["C.A.","J.R.","D.","M.S.","R.","N.J.B.","D.B.","C.R."],"authorFamilyName":["Harrower","Bell","Blumgart","Botham","Fox","Isaac","Roy","Shortall"],"authorFullName":["Harrower, C.A.","Bell, J.R.","Blumgart, D.","Botham, M.S.","Fox, R.","Isaac, N.J.B.","Roy, D.B.","Shortall, C.R."],"authorOrcid":["https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0003-1640-6120","https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0001-6992-3522","https://orcid.org/0000-0002-4869-8052","https://orcid.org/0000-0002-5147-0331","https://orcid.org/0000-0002-7175-5393"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/0347fy350","https://ror.org/05jg03a59"],"catalogue":"eidc","description":"The dataset contains abundance trends for 432 species of moths (mostly macro-moths) estimated using the data collected by Rothamsted Insect Survey (RIS) from their light-trap network between the years 1968 and 2016. The trends were calculated using a Generalized Abundance Index (GAI) model. The trends are presented as year coefficients from the statistical model, Annual Growth Rates (AGR), and the total percentage changes over the time series for each species. For each trend metric 95% and 90% confidence intervals are provided. Two versions of the trends are presented: one using data from all traps in the Britain & Ireland over the period of 1968-2016 and a second dataset restricted to traps in Great Britain over the period of 1970-2016.\n\nData acquisition was partially funded by the Natural Environment Research Council (NERC) under research programme NE/N018125/1 Achieving Sustainable Agricultural Systems (ASSIST). ASSIST is an initiative jointly supported by NERC and the Biotechnology and Biological Sciences Research Council (BBSRC).  The Rothamsted Insect Survey is funded by the BBSRC under the Core Capability Grant BBS/E/C/000J0200.  The research builds upon model development supported by NERC award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"grant":["NE/N018125/1","BBS/E/C/000J0200"],"identifier":"0a7d65e8-8bc8-46e5-ab72-ee64ed851583","incomingCitationCount":3,"givenName":["C.","C.A.","J.R.","D.","M.S.","R.","N.J.B.","D.B.","C.R."],"familyName":["Harrower","Bell","Blumgart","Botham","Fox","Isaac","Roy","Shortall"],"fullName":["Harrower, C.","Harrower, C.A.","Bell, J.R.","Blumgart, D.","Botham, M.S.","Fox, R.","Isaac, N.J.B.","Roy, D.B.","Shortall, C.R."],"keyword":["ASSIST","Achieving Sustainable Agricultural Systems","UK-SCAPE","Biodiversity","Environmental survey"],"keywordsProject":["ASSIST","Achieving Sustainable Agricultural Systems","UK-SCAPE"],"keywordsTheme":["Biodiversity","Environmental survey"],"licence":"Open government licence","lineage":"The Rothamsted light-trap network is a network of standardised light-traps that are operated throughout the year by volunteers. Using standardised traps means that the data from different sites and/or times are directly comparable. Although for the majority of species the time period of the data used in the analysis was 1968-2016, there was a handful of species of species where the time period had to be modified due taxonomic or data issues. For example the time period used for many pug species in the analysis was 1986 onwards due to inconsistency in the identification of these species in earlier years through a lack of suitable identification resources such as field guides. A few other species had initial years excluded due to data issues in those earlier years.\n\nThe GAI methodology is a two-step statistical method designed to analyse count data for taxa showing seasonal patterns in abundance, such as Butterflies and Moths. The first step uses statistical models, in this case generalised additive models (GAMs) with a smoothing spline, to estimate annual flight curves for each species.  The second stage takes these annual flight curves and uses them to correct for seasonal gaps in recording, producing estimated annual abundance indices for each site (site indices), to which a Poisson general linear model (GLM) is fitted allowing to the year and sites effects upon the site. The year coefficient from these GLMs are one of the measures of the temporal abundance trend presented in this data. In addition to the coefficient itself two additional metrics of temporal trend were estimated and are presented here, specifically the Annual Growth Rate (AGR) and the total percentage change over the time series for each species. Confidence intervals on the trend metrics were determined by bootstrapping (1000 replicates).","locations":["POLYGON((-10.669 49.864, -10.669 60.861, 1.768 60.861, 1.768 49.864, -10.669 49.864))"],"orcid":["https://orcid.org/0000-0001-5070-5293","https://orcid.org/0000-0003-1640-6120","https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0001-6992-3522","https://orcid.org/0000-0002-4869-8052","https://orcid.org/0000-0002-5147-0331","https://orcid.org/0000-0002-7175-5393"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre","Rothamsted Research","Butterfly Conservation"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0a7d65e8-8bc8-46e5-ab72-ee64ed851583","10.5285/0a7d65e8-8bc8-46e5-ab72-ee64ed851583"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193","https://ror.org/0347fy350","https://ror.org/05jg03a59"],"state":"published","supplementalDescription":["The Insect Survey is host to a nationwide network of light-traps and suction-traps that collect invaluable data on the migration of moths and aphids."],"supplementalName":["Rothamsted Research Insect Survey website"],"title":"Moth trends for Britain and Ireland from the Rothamsted Insect Survey light-trap network (1968 to 2016)","topic":["0/Biodiversity/","0/Environmental survey/"],"version":1.0,"view":["public","hajd"],"shortenedDescription":"The dataset contains abundance trends for 432 species of moths (mostly macro-moths) estimated using the data collected by Rothamsted Insect Survey (RIS) from their light-trap network between the years 1968 and 2016. The trends were calculated using a Generalized Abundance..."},{"publicationDate":"2022-06-22T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","RSPB","National Trust"],"authorGivenName":["J.W.","M.","P.E.","R.K.","S.","R.F."],"authorFamilyName":["Redhead","Botham","Bellamy","Broughton","Heard","Hinsley","Pywell"],"authorFullName":["Redhead, J.W.","Botham, M.","Bellamy, P.E.","Broughton, R.K.","Heard, M.","Hinsley, S.","Pywell, R.F."],"authorOrcid":["https://orcid.org/0000-0002-2233-3848","https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0003-2234-2119","https://orcid.org/0000-0002-6838-9628","https://orcid.org/0000-0002-4347-1262","https://orcid.org/0000-0001-6431-9959"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains bird and butterfly abundance data from field-surveyed transects at Hillesden, UK (2006-2017). Over this time period, Hillesden hosted two five-year experimental manipulations of agri-environmental habitats, alongside monitoring of their impacts on biodiversity and agronomic indicators. This dataset contains data suitable for analysis of ten-year interannual population trends across both 5-year phases of experimental work at Hillesden, and subsequent comparison with equivalent trends derived from equivalent national recording schemes (Breeding Bird Survey (BBS) for birds, Wider Countryside Butterfly Monitoring Scheme (WCBMS) for butterflies). The data thus relate only to transects which were recorded consistently (nine for birds, seven for butterflies), and to species that were present on the majority of transects. This dataset thus represents a subset from the whole Hillesden biological survey dataset for these two groups, and contains maximum annual counts per transect, across monthly visits (April-August) within the permitted time frame from equivalent national recording schemes (BBS for birds, WCBMS for butterflies). Data were collected as part of a project led by the UK Centre for Ecology and Hydrology, funded by Defra, with analytical work funded by the Natural Environment Research Council (NERC) under research programme NE/N018125/1 ASSIST. ASSIST is an initiative jointly supported by NERC and the Biotechnology and Biological Sciences Research Council (BBSRC).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Department for Environment Food and Rural Affairs","Biotechnology and Biological Sciences Research Council"],"grant":["NE/N018125/1"],"identifier":"c8d0ac67-6d47-42b1-af29-2339be8a5d82","incomingCitationCount":0,"givenName":["John","J.W.","M.","P.E.","R.K.","S.","R.F."],"familyName":["Redhead","Botham","Bellamy","Broughton","Heard","Hinsley","Pywell"],"fullName":["Redhead, J.","Redhead, J.W.","Botham, M.","Bellamy, P.E.","Broughton, R.K.","Heard, M.","Hinsley, S.","Pywell, R.F."],"keyword":["Hillesden","Biodiversity","Agri-environment","population trends","AES","monitoring ","farm","agriculture","butterfly","lepidopteran","bird"],"keywordsPlace":["Hillesden"],"keywordsTheme":["Biodiversity"],"keywordsOther":["Agri-environment","population trends","AES","monitoring ","farm","agriculture","butterfly","lepidopteran","bird"],"licence":"Open government licence","lineage":"Birds were surveyed monthly in the breeding season (April-July) on ~1km transects. Butterfly surveys took place monthly May-August on a series of 2 x 50 m transects located within agri-environment schemes (AES) habitats, along with two-minute timed observations at either end of each transect. Bird and butterflies were identified, counted and recorded in the field by experienced surveyors, with locations mapped using unique transect ID (butterflies) or Ordnance Survey ∼1:2000 maps (birds). All data were then digitised by members of the survey team, allowing for error checking during and subsequent to data entry. For both groups, transects were filtered to identify those surveyed consistently across all experimental years (2006-2010 and 2012-2016 for birds, 2007-2010 and 2014-2017 for butterflies). Transects with no AES intervention and those which underwent changes in level of AES uptake were excluded. Species for analysis were selected on the basis of being present on the majority (>50%) of selected transects across all surveys. The data here pertain only to transects surveyed consistently over both phases of the experiment. Bird data were filtered to adults recorded within 10m of transects, excluding birds seen only in flight. Raw count data per visit were transformed to maximum counts of birds/butterflies per species per transect per year, in order to explore interannual trends and facilitate comparison with similar trends as calculated from national recording schemes.","locations":["POLYGON((-1.03 51.936, -1.03 51.979, -0.965 51.979, -0.965 51.936, -1.03 51.936))"],"orcid":["https://orcid.org/0000-0002-2233-3848","https://orcid.org/0000-0002-5276-1405","https://orcid.org/0000-0003-2234-2119","https://orcid.org/0000-0002-6838-9628","https://orcid.org/0000-0002-4347-1262","https://orcid.org/0000-0001-6431-9959"],"organisation":["NERC EDS Environmental Information Data Centre","UK Centre for Ecology & Hydrology","RSPB","National Trust"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c8d0ac67-6d47-42b1-af29-2339be8a5d82","10.5285/c8d0ac67-6d47-42b1-af29-2339be8a5d82"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/04xw4m193","https://ror.org/00pggkr55"],"state":"published","title":"Bird and butterfly abundance from consistently surveyed agri-environmental monitoring transects at Hillesden, UK, 2006-2017","topic":["0/Biodiversity/"],"version":1.0,"view":["public","hajd"],"shortenedDescription":"This dataset contains bird and butterfly abundance data from field-surveyed transects at Hillesden, UK (2006-2017). Over this time period, Hillesden hosted two five-year experimental manipulations of agri-environmental habitats, alongside monitoring of their impacts..."}],"facets":[{"fieldName":"topic","displayName":"Topic","hierarchical":true,"admin":false,"results":[{"name":"Agriculture","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=funder%7CScottish+Government%E2%80%99s+Rural+%26+Environment+Science+%26+Analytical+Services+Division%2C+through+their+Strategic+Research+Programmes+%282006-2011%2C+2011-2016+and+2016%E2%80%932022%29&facet=funder%7CBiotechnology+and+Biological+Sciences+Research+Council&facet=topic%7C0%2FAgriculture%2F","active":false,"count":69},{"name":"Animal 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