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conductivity) in samples collected from 60 broadleaved woodland restoration sites from Central Scotland (2021) and English Midlands (2022). A further six wildcard sites made up of ancient woodlands (2 in Scotland and 2 in England) and rewilding sites (2 in England) were visited, and soil samples collected using a 10cm soil corer. Information on site characteristics were collected, including age of the restoration site, former land-use and features of the surrounding landscape. DNA was extracted from the soil and sequenced for metagenomic analysis.","documentType":"GEMINI_DOCUMENT","familyName":["Hibdige","Larionov","Harris","Pawlett"],"fullName":["Samuel Hibdige","Hibdige, S.","Larionov, A.","Harris, J.","Pawlett, M."],"funder":["Natural Environment Research Council"],"givenName":["Sam","Alexey","Jim","Mark"],"grant":["NE/V006444/1"],"identifier":"a21b8ed1-124b-4b2a-adb4-c3fdcc9f95a2","incomingCitationCount":0,"keyword":["Soil","Biodiversity","soil chemistry","metagenomics"],"keywordsOther":["soil chemistry","metagenomics"],"keywordsTheme":["Soil","Biodiversity"],"licence":"Non-Open government licence","lineage":"Fieldwork instrumentation used.  Basic field instruments were used to mark plot positions (GPS), set out the plots (20m tape measures), and collect soil samples (soil corer).\nMethods of collection and how data was values were recorded. In each site, five circular plots (radius 10m) were established with their centres randomly decided in advance using ArcGIS. Sampling of our 30 Scottish woodland restorations sites occurred in 2021, for our 30 English woodland restoration sites and our six wildcards, sampling occurred in 2022. Some were subsequently resampled in 2023.  Data processing and lab-based techniques continued into 2024. Soil: Five 10cm soil cores were collected randomly from each plot and stored at 4°C. Soil was sieved to 2mm, samples were split between storage at -20°C for DNA extraction and 4°C. Site characteristics:  Site location was recorded using GPS.  Information on site history (including site age and former land-use) was recorded based on historic maps and information from landowners.  Surrounding land use cover was recorded based on the UCKCEH Landcover Map.\nNature and units of recorded variables and processing steps.  \npH: Soil was air dried and the five samples per site were pooled together. Ultrapure water was added and the samples agitated before values were measured with a pH probe. The pH reading was considered stable when the value did not vary by more than 0.02 units over five seconds. Electrical Conductivity: Soil was air dried and the five samples per site were pooled together. Ultrapure water was added and the samples agitated, centrifuged and filtered. Electrical conductivity was then measured using a probe and recorded in uS. Alpha diversity metrics: DNA was extracted from the soil using laboratory kits and sequenced by a third-party company (Novogene) using a paired-end Illumina platform, (NovaSeq 6000) using well established amplicon regions. The data was processed using QIIME2 to generate feature tables per sample. Taxonomy was assigned to the amplicons using Greengenes 2 (bacteria) and UNITE dynamic (Fungal). Shannon, Faith PD and chao1 were calculated from the QIIME2 feature tables and the assigned taxonomy. Functional metrics (bacteria): PicrusT2 was used to estimate Enzyme Commission numbers (EC), KEGG orthologs (KO) and MEtaCyc pathway predictions were calculated using default parameters using EPA-NG to place sequences into the required reference phylogeny. QIIME2 was then used to calculate Shannon entropy and Chao1 from the pathway abundance feature tables from PicrusT2. Functional metrics (fungi): Funguild was used to estimate guild associations per sample. QIIME2 was then used to calculate Shannon entropy and Chao1 from the guild tables. Former land-use is categorical with 4 levels: Industrial (n=30), Agricultural (n=30), Ancient Woodland (n=4) and Rewilding (n=2).\nQuality control/assessment applied to the data Data was collected in the field using pre-prepared data sheets. Data sheets were checked both visually before digital data entry, and any suspected errors were checked with raw field data sheets.  Extracted DNA was quantified on Nanodrop spectrophotometer to measure ng/μl, 260/280, and 260/230 ratios before being sent for sequencing. The sequencing company (Novogene) provided their own quality control before and after sequencing and any that failed were re-extracted and re-sequenced. The received sequenced reads were examined using FAST-QC and MULTI-QC and trimmed accordingly with cut adapt. The reads were then quality filtered and processed using DADA2. Rarefactions plots were generated to examine feature counts to ensure feature tables were of expected quality.\nLimitations on the data's reliability.  Amplicon sequencing is largely only accurate to genus level and taxonomy assignment is limited by database curation. Functional analysis based on amplicon sequencing is less accurate that shotgun sequencing as functionality is inferred.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"metadataDate":"2026-06-29T18:14:47.000Z","orcid":["https://orcid.org/0000-0001-9266-4979","https://orcid.org/0000-0001-8060-0345"],"organisation":["Cranfield University","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-03-16T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/a21b8ed1-124b-4b2a-adb4-c3fdcc9f95a2","10.5285/a21b8ed1-124b-4b2a-adb4-c3fdcc9f95a2","doi:10.5285/a21b8ed1-124b-4b2a-adb4-c3fdcc9f95a2"],"resourceType":"Dataset","rightsHolder":["Cranfield University"],"ror":["https://ror.org/05cncd958","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset comprises Alpha diversity and functional metrics estimations of soil bacterial and fungal communities and soil chemical properties (pH and electrical conductivity) in samples collected from 60 broadleaved woodland restoration sites from Central Scotland…","state":"published","title":"Soil metagenomics data from woodland restoration sites in Central Scotland, 2021 and English Midlands, 2022","topic":["0/Soil/","0/Biodiversity/"],"version":1.0,"view":["public","glenn"]},{"authorAffiliation":["UK Centre for Ecology & Hydrology","Bangor University","Forest Research Centre, Sabah Forestry Department","Universiti of Malaysia Sabah","Lancaster University"],"authorFamilyName":["Robinson","Elias","Goodall","McNamara","Griffiths","Majalap","Sau Wai","Ostle"],"authorFullName":["Robinson, S.J.B.","Elias, D.M.O.","Goodall, T.","McNamara, N.","Griffiths, R.","Majalap, N.","Sau Wai, Y.","Ostle, N."],"authorGivenName":["S.J.B.","D.M.O.","T.","N.","R.","Y."],"authorOrcid":["https://orcid.org/0000-0002-0011-7407","https://orcid.org/0000-0002-2674-9285","https://orcid.org/0000-0002-1526-4071","https://orcid.org/0000-0002-5143-5819","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-3263-3702"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/040v70252","https://ror.org/04f2nsd36"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains information on soil microbial communities, soil physicochemical properties, forest structural and environmental characteristics across a contiguous area of forest that has undergone contrasting logging disturbance and restoration in Sabah, northern Malaysian Borneo. Sampling was conducted as part of a study investigating soil microbial community responses to either active restoration (enrichment planting) or passive restoration (natural regeneration) of selectively logged forest, relative to old-growth soil microbial communities.\n\nThis work was supported through the UK Natural Environment Research Council (NERC) Human Modified Tropical Forests Programme (Biodiversity and Land-use Impacts on Tropical Ecosystem Function (BALI) consortium [NE/K016253/1]), ENVISION Doctoral Training Scheme [NE/L002604/1] and NC International Programme [NE/X006247/1].","documentType":"GEMINI_DOCUMENT","familyName":["Robinson","Elias","Goodall","McNamara","Griffiths","Majalap","Sau Wai","Ostle"],"fullName":["Samuel Robinson","Robinson, S.J.B.","Elias, D.M.O.","Goodall, T.","McNamara, N.","Griffiths, R.","Majalap, N.","Sau Wai, Y.","Ostle, N."],"funder":["Natural Environment Research Council"],"givenName":["S.J.B.","D.M.O.","T.","N.","R.","Y."],"grant":["NE/K016253/1","NE/L002604/1","NE/X006247/1"],"identifier":"08bfe302-d33f-490d-97be-27bb83a0f38d","incomingCitationCount":0,"keyword":["Biodiversity","bacteria","ectomycorrhizal","forest rehabilitation","forest restoration","fungi","land use","selective logging","soil","soil microbes","soil properties"],"keywordsOther":["bacteria","ectomycorrhizal","forest rehabilitation","forest restoration","fungi","land use","selective logging","soil","soil microbes","soil properties"],"keywordsTheme":["Biodiversity"],"licence":"Open government licence","lineage":"Soil samples and forest structural and environmental data were collected at nine sites during one campaign in March 2018 . Three sampling sites were chosen in each of three forest types of old-growth, naturally regenerating and actively restored logged forest. Old-growth forest was located in the Danum Valley Conservation Area, and logged forest sites were situated within the adjacent Innoprise Face Foundation Rainforest Rehabilitation Project (INFAPRO) area. A geospatial transect design was employed for soil sampling and measurement of microclimate variables at each site to assess variation in microbial communities over cm to m scales. This comprised three transects radiating out from one centre point positioned at 120 ° to one another. Sampling points were located at the centre point, then at increasing distances of 10 cm, 30 cm, 90 cm, 2.7 m, 8.4 m and 24.3 m along each transect relative to the centre. The circumferences of all tree stems with diameter at breast height (DBH) >5 cm within a 2.5 m buffer of all transects were recorded at each site for site-level calculation of stem density and basal area. Soil physicochemical properties were analysed at the Sabah Forest Research Centre, Sepilok. Organic layer soil microbial community data were generated by 16S and ITS amplicon sequencing at UKCEH Wallingford, and Phospholipid Fatty Acid (PLFA) analysis at Lancaster University in the UK. Fungal functional guild classifications were assigned to fungal sequences using the FUNGuild annotation tool. Alpha diversity indices for microbial groups and relative abundances of fungal guilds were generated after rarefying by minimum read counts for each group . Rates of spatial turnover in soil microbial taxa for different microbial groups were calculated using the distance decay approach via linear modelling.","locations":["POLYGON((117.78 4.939, 117.78 5.012, 117.852 5.012, 117.852 4.939, 117.78 4.939))"],"metadataDate":"2026-06-29T17:19:40.000Z","orcid":["https://orcid.org/0000-0002-0011-7407","https://orcid.org/0000-0002-2674-9285","https://orcid.org/0000-0002-1526-4071","https://orcid.org/0000-0002-5143-5819","https://orcid.org/0000-0002-3341-4547","https://orcid.org/0000-0003-3263-3702"],"organisation":["UK Centre for Ecology & Hydrology","Bangor University","Forest Research Centre, Sabah Forestry Department","Universiti of Malaysia Sabah","Lancaster University","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-08-21T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/08bfe302-d33f-490d-97be-27bb83a0f38d","10.5285/08bfe302-d33f-490d-97be-27bb83a0f38d","doi:10.5285/08bfe302-d33f-490d-97be-27bb83a0f38d"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Lancaster University"],"ror":["https://ror.org/00pggkr55","https://ror.org/006jb1a24","https://ror.org/040v70252","https://ror.org/04f2nsd36","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains information on soil microbial communities, soil physicochemical properties, forest structural and environmental characteristics across a contiguous area of forest that has undergone contrasting logging disturbance and restoration in Sabah, northern…","state":"published","title":"Soil microbial communities, soil, environmental and forest structural properties across old-growth forest and naturally regenerating or actively restored selectively logged tropical forest in Sabah, Borneo, March 2018 v2","topic":["0/Biodiversity/"],"version":1.0,"view":["public","katwri"]},{"authorAffiliation":["Université d’Orléans","University of Leeds","University of Bristol"],"authorFamilyName":["Baude","Kunin","Davies","Wright","Memmott"],"authorFullName":["Baude, M.","Kunin, W.","Davies, N.","Wright, E.","Memmott, J."],"authorGivenName":["M.","W.","N.","E.","J."],"authorOrcid":["https://orcid.org/0000-0002-8475-9852","https://orcid.org/0000-0002-9812-2326","https://orcid.org/0000-0001-7725-4728","https://orcid.org/0000-0002-2113-2577"],"authorRor":["https://ror.org/024mrxd33","https://ror.org/0524sp257"],"availability":"Available","catalogue":"eidc","dataFormat":["Plain text"],"description":"This dataset provides pollen production values for 168 common plant species found in the UK. The dataset consists of pollen volume per flower, calculated from pollen grain number and pollen grain size. Pollen data can be useful in identifying the high pollen producing species for pollinator conservation and it can be combined with floral surveys to estimate the pollen production of plant communities. ","documentType":"GEMINI_DOCUMENT","familyName":["Baude","Kunin","Davies","Wright","Memmott"],"fullName":["Baude, M.","Kunin, W.","Davies, N.","Wright, E.","Memmott, J."],"funder":["Natural Environment Research Council"],"givenName":["M.","W.","N.","E.","J."],"grant":[" NE/L002434/1"],"identifier":"0b454d53-dfe7-48fd-9e18-b683d004b159","incomingCitationCount":0,"keyword":["UK","Biodiversity","British plants","Wild flowers","Floral resources","Pollinators","Nectar","pollen","flower"],"keywordsOther":["British plants","Wild flowers","Floral resources","Pollinators","Nectar","pollen","flower"],"keywordsPlace":["UK"],"keywordsTheme":["Biodiversity"],"licence":"Open government licence","lineage":"Fieldwork: collection of stems with flower buds for 174 taxa (from 2 populations per species when possible)\nLabwork steps:\n-Extracting the pollen from newly opened anthers for 168 taxa\n-Counting pollen grains under microscope (modified Fuchs-Rosenthal counting chamber) to estimate the mean number of pollen grains per stamen for each species.\n-Measuring pollen grain axes for calculating the mean volume of the one pollen grain for each species (in µm3).\n-Estimating the pollen volume per stamen and then the pollen volume per flower after recording the number of stamens per flower for each species (in µm3)\n\nQuality control: from each tube, pollen counting was repeated twice in order to provide two replicates per sample. Plant species taxonomy was standardised through the ‘rgbif’ package according to the GBIF Backbone Taxonomy reference.\n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"metadataDate":"2026-06-29T17:17:27.000Z","orcid":["https://orcid.org/0000-0002-8475-9852","https://orcid.org/0000-0002-9812-2326","https://orcid.org/0000-0001-7725-4728","https://orcid.org/0000-0002-2113-2577"],"organisation":["Université d’Orléans","University of Leeds","University of Bristol","Université d’Orléans, Orléans, France","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-03-17T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0b454d53-dfe7-48fd-9e18-b683d004b159","10.5285/0b454d53-dfe7-48fd-9e18-b683d004b159","doi:10.5285/0b454d53-dfe7-48fd-9e18-b683d004b159"],"resourceType":"Dataset","rightsHolder":["University of Bristol"],"ror":["https://ror.org/024mrxd33","https://ror.org/0524sp257","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset provides pollen production values for 168 common plant species found in the UK. The dataset consists of pollen volume per flower, calculated from pollen grain number and pollen grain size. Pollen data can be useful in identifying the high pollen producing…","state":"published","title":"Pollen production values of common British plant species","topic":["0/Biodiversity/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["University of Leeds"],"authorFamilyName":["Mittal","Whitfield"],"authorFullName":["Mittal, N.","Whitfield, S."],"authorGivenName":["N. ","Stephen"],"authorOrcid":["https://orcid.org/0000-0002-3040-778X"],"authorRor":["https://ror.org/024mrxd33"],"availability":"Available","catalogue":"eidc","dataFormat":["Microsoft Word (docx)"],"description":"The dataset provides transcripts from focus groups in Salima, Mangochi and Zomba (Malawi). The focus groups' discussions focused on important monthly agricultural activities in association with the climate services and extreme weather events. This outlined how climatic factors affected agricultural decision-making. \n\nThe data were produced as part of NERC Program Science for Humanitarian Emergencies and Resilience (SHEAR). Grant reference - Improving Preparedness to Agro-Climatic Extremes in Malawi (IPACE-Malawi).","documentType":"GEMINI_DOCUMENT","familyName":["Mittal","Whitfield"],"fullName":["Mittal, N.","Whitfield, S."],"funder":["Natural Environment Research Council"],"givenName":["N. ","Stephen"],"grant":["NE/S005900/1"],"identifier":"199b0046-79a3-4e74-8152-17f10c376671","incomingCitationCount":0,"keyword":["Africa","Agriculture","Agro-climate indices","Maize","Farmers","Decision making","extreme weather","weather","ecosystem services","agriculture"],"keywordsOther":["Agro-climate indices","Maize","Farmers","Decision making","extreme weather","weather","ecosystem services","agriculture"],"keywordsPlace":["Africa"],"keywordsTheme":["Agriculture"],"licence":"Open government licence","lineage":"Between April and May 2019 15 focus group discussions (FGDs) were conducted across five Extension Planning Areas (EPAs); 10 FGDs with farmers and 5 FGDs with Agricultural Extension Development Officers (AEDOs). The farmers involved in the FGD were selected by the AEDOs and included both male and female farmers (and amongst which one or more than one was the lead farmer i.e., farmer representative). In total, 70 female farmers and 48 male farmers, and 21 AEDOs participated in the FGDs. The age of male farmer and female farmer participants ranged from 28–58 to 20–54, respectively. As part of the FGDs these seasonal calendars were used to guide the discussion. \n\nThe FGDs were conducted in the local language Chichewa, facilitated by a local research assistant who audio recorded, translated and transcribed the discussions.\n","locations":["POLYGON((33.877 -15.512, 33.877 -13.726, 35.722 -13.726, 35.722 -15.512, 33.877 -15.512))"],"metadataDate":"2026-06-29T17:19:35.000Z","orcid":["https://orcid.org/0000-0002-3040-778X"],"organisation":["University of Leeds","NERC EDS Environmental Information Data Centre"],"publicationDate":"2022-03-22T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/199b0046-79a3-4e74-8152-17f10c376671","10.5285/199b0046-79a3-4e74-8152-17f10c376671","doi:10.5285/199b0046-79a3-4e74-8152-17f10c376671"],"resourceType":"Dataset","rightsHolder":["University of Leeds"],"ror":["https://ror.org/024mrxd33","https://ror.org/04xw4m193"],"shortenedDescription":"The dataset provides transcripts from focus groups in Salima, Mangochi and Zomba (Malawi). The focus groups' discussions focused on important monthly agricultural activities in association with the climate services and extreme weather events. This outlined how climatic…","state":"published","title":"Seasonal agricultural calendars presenting activities per month for farmers in Malawi, April-May 2019","topic":["0/Agriculture/"],"version":1.0,"view":["public","clwe"]},{"authorAffiliation":["University of Stirling","Forest Research"],"authorFamilyName":["Barnett","Waddell","Fuentes-Montemayor","Watts","Guy","Park"],"authorFullName":["Barnett, R.","Waddell, E.","Fuentes-Montemayor, E.","Watts, K.","Guy, M.","Park, K.J."],"authorGivenName":["R.","E.","K.","M.","K.J."],"authorOrcid":["https://orcid.org/0009-0000-1392-8404","https://orcid.org/0000-0003-2555-6390","https://orcid.org/0000-0002-5550-9432","https://orcid.org/0000-0002-1832-9475","https://orcid.org/0000-0001-6080-7197"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This data gives acoustic index values for recordings collected in 60 broadleaved woodland restoration sites in Central Scotland (n=30) and the English Midlands (n=30), as well as 18 grassland sites in southern England. Additionally, there are recordings from 6 wildcard sites, made up of ancient woodlands (2 in Scotland and 2 in England) and rewilding sites (2 in England). There were three deployments of acoustic recorders between July 2021 and April 2022. ","documentType":"GEMINI_DOCUMENT","familyName":["Barnett","Waddell","Fuentes-Montemayor","Watts","Guy","Park"],"fullName":["Barnett, R.","Waddell, E.","Fuentes-Montemayor, E.","Watts, K.","Guy, M.","Park, K.J."],"funder":["Natural Environment Research Council"],"givenName":["R.","E.","K.","M.","K.J."],"grant":["NE/V006444/1"],"identifier":"33b6dea2-94c5-4e33-a1b3-9a6bd1c8776a","incomingCitationCount":0,"keyword":["Environmental survey","restoration","woodland creation","broadleaved woodland","grassland","ecoacoustics","soundscape ecology"],"keywordsOther":["restoration","woodland creation","broadleaved woodland","grassland","ecoacoustics","soundscape ecology"],"keywordsTheme":["Environmental survey"],"licence":"Open government licence","lineage":"At each site, AudioMoth acoustic recorders were deployed for one week per deployment. The 30 woodlands in Scotland were surveyed in a first deployment between July and August 2021, and a second deployment in September 2021. All 84 sites across Scotland and England were surveyed in the third deployment in April 2021. \nThe same settings were used for each deployment; a sample rate of 48kHz was used, and AudioMoths recorded for 9 minutes and 55 seconds, then slept for 5 seconds, allowing nearly continuous recording throughout the week-long deployment. \nThe recordings were then analysed using R to calculate the following acoustic indices in the packages seewave and soundecology.\n•\tAcoustic complexity index (ACI)\n•\tAcoustic diversity index (ADI)\n•\tAcoustic Evenness (AEve)\n•\tBioacoustic Index (Bio)\n•\tFrequency Peaks (FP)\n•\tTemporal Entropy (Ht)\n•\tSpectral Entropy (Hf)\n•\tTotal Entropy (H) \n•\tMedian of the Amplitude Envelope (M)\n•\tNormalised Difference Soundscape Index (NDSI)\nAdditionally, Acoustic Richness (AR) was calculated, using the Ht and M indices. \n\n","locations":["POLYGON((-6.452 49.864, -6.452 55.812, 1.768 55.812, 1.768 49.864, -6.452 49.864))","POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"metadataDate":"2026-06-29T16:51:20.000Z","orcid":["https://orcid.org/0009-0000-1392-8404","https://orcid.org/0000-0003-2555-6390","https://orcid.org/0000-0002-5550-9432","https://orcid.org/0000-0002-1832-9475","https://orcid.org/0000-0001-6080-7197"],"organisation":["University of Stirling","Forest Research","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-07-21T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/33b6dea2-94c5-4e33-a1b3-9a6bd1c8776a","10.5285/33b6dea2-94c5-4e33-a1b3-9a6bd1c8776a","doi:10.5285/33b6dea2-94c5-4e33-a1b3-9a6bd1c8776a"],"resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/04xw4m193"],"shortenedDescription":"This data gives acoustic index values for recordings collected in 60 broadleaved woodland restoration sites in Central Scotland (n=30) and the English Midlands (n=30), as well as 18 grassland sites in southern England. Additionally, there are recordings from 6 wildcard…","state":"published","title":"Acoustic monitoring data from woodland, grassland and rewilding sites in Scotland and England, 2021-2022","topic":["0/Environmental survey/"],"version":1.0,"view":["public","glenn"]},{"authorAffiliation":["Imperial College London","Natural History Museum","University of Northampton","Oxford University Museum of Natural History","National Museums Liverpool","Tullie House Museum and Art Gallery","National Museums Scotland"],"authorFamilyName":["Arce","Cantwell-Jones","Tansley","Barnes","Brace","Mullin","Notton","Ollerton","Eatough","Rhodes","Bian","Hogan","Hunter","Jackson","Whiffin","Blagoderov","Broad","Judd","Kokkini","Livermore","Dixit","Pearse","Gill"],"authorFullName":["Arce, A.","Cantwell-Jones, A.","Tansley, M.","Barnes, I.","Brace, S.","Mullin, M.","Notton, D.","Ollerton, J.","Eatough, E.","Rhodes, M.W.","Bian, X.","Hogan, J.","Hunter, T.","Jackson, S.","Whiffin, A.","Blagoderov, V.","Broad, G.","Judd, S.","Kokkini, P.","Livermore, L.","Dixit, M.K.","Pearse, W.D.","Gill, R."],"authorGivenName":["A.","M.","I.","S.","D.","J.","E.","M.W.","X.","T.","V.","G.","P.","L.","M.K.","W.D.","R."],"authorOrcid":["https://orcid.org/0000-0002-3577-2110","https://orcid.org/0000-0002-4874-1807","https://orcid.org/0000-0001-9389-1284"],"authorRor":["https://ror.org/041kmwe10","https://ror.org/039zvsn29","https://ror.org/04jp2hx10","https://ror.org/05vqfs419","https://ror.org/001000g32","https://ror.org/00pxfwe85"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)","R"],"description":"Data comprise the collection label details of museums specimens for five bumblebee species (Bombus hortorum, B. muscorum, B. lapidarius, B. pascuorum and B. sylvarum) from five UK museums (Natural History Museum (London), National Museums Scotland, Oxford University Museum of Natural History, Tullie House Museum and Art Gallery, and World Museum (Liverpool)). \n\nThe details include species, collector, date collected, location, and caste. The location for each specimen was geotagged using Google Maps’ Geocoding application programming interface. Each specimen had its left and right forewing landmarked, with the wing shapes aligned using a Procrustes alignment, and Procrustes distance between the wings calculated. \n\nThe data came from a digitisation program as part of a NERC funded Standard Grant awarded to R. Gill (NE/P012574/1) and I. Barnes (NE/P012914/1).","documentType":"GEMINI_DOCUMENT","familyName":["Arce","Cantwell-Jones","Tansley","Barnes","Brace","Mullin","Notton","Ollerton","Eatough","Rhodes","Bian","Hogan","Hunter","Jackson","Whiffin","Blagoderov","Broad","Judd","Kokkini","Livermore","Dixit","Pearse","Gill"],"fullName":["Arce, A.","Cantwell-Jones, A.","Tansley, M.","Barnes, I.","Brace, S.","Mullin, M.","Notton, D.","Ollerton, J.","Eatough, E.","Rhodes, M.W.","Bian, X.","Hogan, J.","Hunter, T.","Jackson, S.","Whiffin, A.","Blagoderov, V.","Broad, G.","Judd, S.","Kokkini, P.","Livermore, L.","Dixit, M.K.","Pearse, W.D.","Gill, R."],"funder":["Natural Environment Research Council"],"givenName":["A.","M.","I.","S.","D.","J.","E.","M.W.","X.","T.","V.","G.","P.","L.","M.K.","W.D.","R.","Richard"],"grant":["NE/P012574/1"],"identifier":"2696535e-564a-4c6a-877e-515996fa97a1","incomingCitationCount":0,"keyword":["Climate and climate change","Bumblebee","Procustes","Museums","Wing shape","Fluctuating asymmetry","Distance","Stress","Centuary","insect declines","Bombus hortorum","Bombus muscorum","Bombus lapidarius","Bombus pascuorum","Bombus sylvarum","bee","morphology"],"keywordsOther":["Bumblebee","Procustes","Museums","Wing shape","Fluctuating asymmetry","Distance","Stress","Centuary","insect declines","Bombus hortorum","Bombus muscorum","Bombus lapidarius","Bombus pascuorum","Bombus sylvarum","bee","morphology"],"keywordsTheme":["Climate and climate change"],"licence":"Open government licence","lineage":"Bumblebee museum collections were digitised (label data entered digitally, and dorsal images taken using an SLR digital camera). Bumblebees where all landmarks could be seen on the wings in the images were landmarked. For left and right wings showing high angle differentials or high degree of tilting, the respective specimens were filtered out from the analysis. Please see the documentation accompanying this dataset for further information.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"metadataDate":"2026-06-29T17:03:11.000Z","orcid":["https://orcid.org/0000-0002-3577-2110","https://orcid.org/0000-0002-4874-1807","https://orcid.org/0000-0001-9389-1284"],"organisation":["Imperial College London","Natural History Museum","University of Northampton","Oxford University Museum of Natural History","National Museums Liverpool","Tullie House Museum and Art Gallery","National Museums Scotland","NERC EDS Environmental Information Data Centre"],"publicationDate":"2022-07-25T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/2696535e-564a-4c6a-877e-515996fa97a1","10.5285/2696535e-564a-4c6a-877e-515996fa97a1","doi:10.5285/2696535e-564a-4c6a-877e-515996fa97a1"],"resourceType":"Dataset","rightsHolder":["Imperial College London"],"ror":["https://ror.org/041kmwe10","https://ror.org/039zvsn29","https://ror.org/04jp2hx10","https://ror.org/05vqfs419","https://ror.org/001000g32","https://ror.org/00pxfwe85","https://ror.org/04xw4m193"],"shortenedDescription":"Data comprise the collection label details of museums specimens for five bumblebee species (Bombus hortorum, B. muscorum, B. lapidarius, B. pascuorum and B. sylvarum) from five UK museums (Natural History Museum (London), National Museums Scotland, Oxford University…","state":"published","title":"UK museum specimen metadata and procrustes distance between left and right forewings, for five bumblebee species","topic":["0/Climate and climate change/"],"version":1.0,"view":["public","crimar"]},{"authorAffiliation":["Centre for Ecology & Hydrology","Lancaster University","Forest Research Centre, Sabah "],"authorFamilyName":["Elias","McNamara","Ostle","Majalap - Lee"],"authorFullName":["Elias, D.M.O.","McNamara, N.P.","Ostle, N.J.","Majalap - Lee, N."],"authorGivenName":["D.M.O.","N.P.","N.J.","N."],"authorOrcid":["https://orcid.org/0000-0002-2674-9285","https://orcid.org/0000-0003-3263-3702"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/04f2nsd36"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"Data comprise soil properties and soil nutrients across unlogged and logged tropical forests in Sabah, Malaysia. Soil properties (ID, Site, Land_Use, Plot_Name, Subplot, Horizon, pH, Total_C, Total_N, Total_P, inorganic_P, C:N, Sand, Silt, Clay) measured in soil samples and soil nutrients (Identifier, Site, Land_Use, Plot_Name, Subplot, NO3_N, NH4_N, Total_N, Ca, Mg, K, P, Fe, Mn Cu, Zn, B, S, Pb, Al, Cd) extracted from buried ion exchange membranes sampled between March and April 2015 and measured at Forest Research Centre, Sabah, Malaysia. This data is  a contribution from the UK NERC-funded Biodiversity And Land-use Impacts on Tropical Ecosystem Function (BALI) consortium (http://bali.hmtf.info).","documentType":"GEMINI_DOCUMENT","familyName":["Elias","McNamara","Ostle","Majalap - Lee"],"fullName":["Elias, D.M.O.","McNamara, N.P.","Ostle, N.J.","Majalap - Lee, N.","Elias, D."],"funder":["Natural Environment Research Council"],"givenName":["D.M.O.","N.P.","N.J.","N.","Dafydd"],"grant":["NE/K016253/1"],"identifier":"7e046092-8405-41b8-9e38-67a844bb9e7d","incomingCitationCount":0,"keyword":["Soil","pH","magnesium","potassium","manganese","phosphorus","aluminium","lead","sulphur","copper","zinc","iron","ammonium","calcium","nitrate","cadmium","nitrogen","carbon","boron"],"keywordsOther":["pH","magnesium","potassium","manganese","phosphorus","aluminium","lead","sulphur","copper","zinc","iron","ammonium","calcium","nitrate","cadmium","nitrogen","carbon","boron"],"keywordsTheme":["Soil"],"licence":"Open government licence","lineage":"Eight 1-hectare plots were located across three sites representative of unlogged or logged tropical forest; Danum Valley Conservation Area (DVCA), Maliau Basin Conservation Area (MBCA) and SAFE project in Sabah, Malaysia (Riutta et al. 2018). A stratified sampling design was utilised. 1 Ha plots were first subdivided into twnety-five 20x20 m subplots with five of these randomly selected for sampling.\n\nSoil nutrients data: at three locations within each subplot, four pairs of PRS™ ion exchange membranes (www.westernag.ca) (one pair = 1 cation & 1 anion) were buried vertically to approx 10cm depth. These were left in situ for two weeks, removed, washed with deionised water and shipped to the manufacturer (Western Ag, Canada) for analysis. The four probe pairs from each location were pooled prior to elution with 0.5M HCl for one hour. NO3- and NH4+ were measured colorimetrically using automated flow injection analysis (FIA). All other elements were analysed using inductively coupled plasma –optical emission spectroscopy (ICP-OES). Results are reported as supply rates over the burial period (µg/10cm2/14 days). \n\nSoil properties data: Five samples were collected from each subplot using a gouge augur. The organic layer depth was measured and then horizons (organic and mineral soil) were separated and sealed in Ziploc bags. The five samples from each subplot were pooled prior to analysis to yield 20 organic and 20 mineral soil samples per forest type (Unlogged and logged forest). pH was measured on fresh soils in a 2.5:1 water suspension (Landon, 1984). Total C and N was measured using an elementar vario max CN analyser. Total P was extracted using a sulphuric-nitric-perchloric acid digest (Allen, 1989) whilst inorganic P was extracted using a Bray No. 1 solution (Bray and Kurtz. 1945). Concentration was measured on a spectrophotometer at 880nm (Anderson & Ingram, 1993). Sand silt and clay were determined using the pipette method. References available from supporting documentation.","locations":["POLYGON((114.375 2.808, 114.375 6.945, 119.783 6.945, 119.783 2.808, 114.375 2.808))"],"metadataDate":"2026-06-29T16:57:59.000Z","orcid":["https://orcid.org/0000-0002-2674-9285","https://orcid.org/0000-0003-3263-3702"],"organisation":["Centre for Ecology & Hydrology","Lancaster University","Forest Research Centre, Sabah ","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre","UK Centre for Ecology & Hydrology"],"publicationDate":"2018-07-23T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7e046092-8405-41b8-9e38-67a844bb9e7d","10.5285/7e046092-8405-41b8-9e38-67a844bb9e7d","doi:10.5285/7e046092-8405-41b8-9e38-67a844bb9e7d"],"resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04f2nsd36","https://ror.org/04xw4m193"],"shortenedDescription":"Data comprise soil properties and soil nutrients across unlogged and logged tropical forests in Sabah, Malaysia. Soil properties (ID, Site, Land_Use, Plot_Name, Subplot, Horizon, pH, Total_C, Total_N, Total_P, inorganic_P, C:N, Sand, Silt, Clay) measured in soil samples…","state":"published","supplementalName":["Website of the BALI consortium"],"title":"Soil properties across primary forest, logged forest and oil palm plantation in Sabah, Malaysia","topic":["0/Soil/"],"version":1.0,"view":["public","clwe"]},{"authorAffiliation":["Cardiff University"],"authorFamilyName":["Zarate","Cuthbert"],"authorFullName":["Zarate, E.","Cuthbert, M.O."],"authorGivenName":["E.","M.O."],"authorOrcid":["https://orcid.org/0000-0001-6721-022X"],"availability":"Available","catalogue":"eidc","dataFormat":["dat"],"description":"This datasets contains Electrical Resistivity Tomography surveys taken in the Makutapora Basin, Central Tanzania, using an AGI SuperSting R8 (STING) resistivity meter. Survey geometry, parameters and coordinates are also included.","documentType":"GEMINI_DOCUMENT","familyName":["Zarate","Cuthbert"],"fullName":["Zarate, E.","Cuthbert, M.O.","Cuthbert, M."],"funder":["Natural Environment Research Council"],"givenName":["E.","M.O.","Mark"],"grant":["NE/P017819/1","NE/L002434/1"],"identifier":"1998da32-a978-41a4-8a66-81df1e625cca","incomingCitationCount":1,"keyword":["Tanzania","Electrical Resistivity Tomography","hydrogeology","geology","geophysics"],"keywordsOther":["Electrical Resistivity Tomography","hydrogeology","geology","geophysics"],"keywordsPlace":["Tanzania"],"licence":"Open government licence","lineage":"The data were generated using .stg outputs from the STING meter and converted to .dat files using a bespoke Python code while also removing anomalous values.","locations":["POLYGON((35.717 -5.97, 35.717 -5.95, 35.746 -5.95, 35.746 -5.97, 35.717 -5.97))"],"metadataDate":"2026-06-29T18:15:58.000Z","orcid":["https://orcid.org/0000-0001-6721-022X"],"organisation":["Cardiff University","NERC EDS Environmental Information Data Centre"],"publicationDate":"2021-07-13T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1998da32-a978-41a4-8a66-81df1e625cca","10.5285/1998da32-a978-41a4-8a66-81df1e625cca","doi:10.5285/1998da32-a978-41a4-8a66-81df1e625cca"],"resourceType":"Dataset","rightsHolder":["Cardiff University"],"ror":["https://ror.org/04xw4m193","https://ror.org/03kk7td41"],"shortenedDescription":"This datasets contains Electrical Resistivity Tomography surveys taken in the Makutapora Basin, Central Tanzania, using an AGI SuperSting R8 (STING) resistivity meter. Survey geometry, parameters and coordinates are also included.","state":"published","title":"Electrical resistivity tomography surveys from the Makutapora Basin, Tanzania, June-July 2019","version":1.0,"view":["public","clwe"]},{"authorAffiliation":["University of Stirling","Forest Research"],"authorFamilyName":["Waddell","Fuentes-Montemayor","Watts","Guy","Park"],"authorFullName":["Waddell, E.","Fuentes-Montemayor, E.","Watts, K.","Guy, M.","Park, K.J."],"authorGivenName":["E.","K.","M.","K.J."],"authorOrcid":["https://orcid.org/0000-0003-2555-6390","https://orcid.org/0000-0002-5550-9432","https://orcid.org/0000-0002-1832-9475","https://orcid.org/0000-0001-6080-7197"],"authorRor":["https://ror.org/045wgfr59","https://ror.org/03wcc3744"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"In 2021 and 2022 a total of 60 broadleaved woodland restoration sites from Central Scotland (2021) and English Midlands (2022) and a further six wildcard sites made up of ancient woodlands (2 in Scotland and 2 in England) and rewilding sites (2 in England) were surveyed to calculate metrics of ecological complexity from biodiversity and habitat structure data. In each woodland, we monitored ground flora (surveyed using quadrats), adult trees (within circular plots), tree seedlings and saplings (transects), volume of deadwood (measured within transects), canopy cover estimations, invertebrates on understorey vegetation (surveyed by tray beating) and (mostly) flying invertebrates (surveyed using Malaise traps).  Information on site characteristics were collected, including age of the restoration site, former land-use and features of the surrounding landscape.","documentType":"GEMINI_DOCUMENT","familyName":["Waddell","Fuentes-Montemayor","Watts","Guy","Park"],"fullName":["Waddell, E.","Fuentes-Montemayor, E.","Watts, K.","Guy, M.","Park, K.J."],"funder":["Natural Environment Research Council"],"givenName":["E.","K.","M.","K.J."],"grant":["NE/V006444/1"],"identifier":"8c997943-1f90-4897-87b3-491eaef534ec","incomingCitationCount":0,"keyword":["Scotland","England","Biodiversity"],"keywordsPlace":["Scotland","England"],"keywordsTheme":["Biodiversity"],"licence":"Open government licence","lineage":"Basic field instruments were used to mark plot positions (GPS), set out the plots (20 m tape measures), measure the adult trees and volume of deadwood (diameter at breast height (DBH) measuring tape) and collect invertebrate samples (tray beating kit and Malaise trap). \nIn each site, five circular plots (radius 10 m) were established with their centres randomly decided in advance using ArcGIS. Sampling of our 30 Scottish woodland restorations sites occurred in 2021, for our 30 English woodland restoration sites and our six wildcards, sampling occurred in 2022.  Data processing and lab-based identification continued into 2023.  Plants:  Ten 2 x 2 m quadrats were undertaken, two per circular plot.  The presence or absence of all vascular plant species found within the quadrat was recorded. Tree richness and structure:  The diameter-at-breast height (dbh; 1.3m) was recorded for all large trees ≥7 cm dbh within the 10 m radius plot and all small trees ≥4<7 cm dbh were measured within a sub-plot of 3 m radius. All trees were identified to genus. Tree sapling and seedlings: Tree saplings <4 cm dbh and above 50 cm in height were identified to genus and the number of individuals counted within 1 m either side of a 20 m transect running through the plot centre, with tree seedlings below 50 cm in height identified and counted within 0.5 m either side the 20 m transect. Deadwood: In each plot, all deadwood within a 4 x 20 m transect running North-South was measured and both the rate of decay and type of deadwood recorded. Canopy cover: In each plot, three canopy cover measurements were taken at the plot centre and above each quadrat (15 per site) using ‘PercentageCover’ application (available to download for iOS devices at percentagecover.com). Understorey invertebrates: Invertebrate communities in trees (>1.5 m in height) were sampled using beating trays (110×86 cm tray and 10 seconds beating) at two points per plot (n=10/site). Each woodland was surveyed twice (c. 8 weeks apart).  Invertebrates in Malaise traps: A Malaise trap was deployed twice in each woodland for one week at a time to survey (mostly) flying invertebrates. Site characteristics:  Site location was recorded using GPS.  Information on site history (including site age and former land-use) was recorded based on historic maps and information from landowners.  Surrounding land use cover was recorded based on the UCKCEH Landcover Map.\nAll field workers had previous experience in either botany or entomology as well as undergoing extensive training in the species encounter.  Data was collected in the field using pre-prepared data sheets. Data sheets were checked both visually before digital data entry, and any suspected errors were checked with raw field data sheets.  \nNot all identifications are to species level with this varying depending on taxonomic expertise. \n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"metadataDate":"2026-06-29T16:37:51.000Z","orcid":["https://orcid.org/0000-0003-2555-6390","https://orcid.org/0000-0002-5550-9432","https://orcid.org/0000-0002-1832-9475","https://orcid.org/0000-0001-6080-7197"],"organisation":["University of Stirling","Forest Research","NERC EDS Environmental Information Data Centre"],"publicationDate":"2025-01-08T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8c997943-1f90-4897-87b3-491eaef534ec","10.5285/8c997943-1f90-4897-87b3-491eaef534ec","doi:10.5285/8c997943-1f90-4897-87b3-491eaef534ec"],"resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/03wcc3744","https://ror.org/04xw4m193"],"shortenedDescription":"In 2021 and 2022 a total of 60 broadleaved woodland restoration sites from Central Scotland (2021) and English Midlands (2022) and a further six wildcard sites made up of ancient woodlands (2 in Scotland and 2 in England) and rewilding sites (2 in England) were surveyed…","state":"published","title":"Insect, plant and tree data from woodland restoration sites in Central Scotland, 2021 and English Midlands, 2022 ","topic":["0/Biodiversity/"],"version":1.0,"view":["public","shofer"]},{"authorAffiliation":["Met Office","University of Exeter","Universidade do Estado de Mato Grosso"],"authorFamilyName":["New","Belcher","Crawford","de Oliveira","Marimon","Feldpausch"],"authorFullName":["New, S.","Belcher, C.","Crawford, A.","de Oliveira, E.","Marimon, B.H.","Feldpausch, T.R."],"authorGivenName":["S.","Claire","A.","E.","B.H.","T.R. "],"authorOrcid":["https://orcid.org/0000-0001-7992-2179","https://orcid.org/0000-0003-3496-8290","https://orcid.org/0000-0002-2133-2886","https://orcid.org/0000-0002-6446-3376","https://orcid.org/0000-0002-6359-6281","https://orcid.org/0000-0002-6631-7962"],"authorRor":["https://ror.org/01ch2yn61","https://ror.org/03yghzc09","https://ror.org/02cbymn47"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset includes charcoal reflectance measurements. The charcoal pieces were collected from the soil surface in tropical rainforest plots in Feliz Natal (southern Brazil, n= 75) and Pucallpa (Peru, n=14) in 2015. In total, 89 charcoal pieces were measured for reflectance. The reflectance measurements were taken in a minimum of 24 and a maximum of 70 repetitions per sample.\n","documentType":"GEMINI_DOCUMENT","familyName":["New","Belcher","Crawford","de Oliveira","Marimon","Feldpausch"],"fullName":["New, S.","Belcher, C.","Crawford, A.","de Oliveira, E.","Marimon, B.H.","Feldpausch, T.R."],"funder":["Natural Environment Research Council","Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (Coordination for the Improvement of Higher Education Personnel, CAPES, Brazil)","SilvaCarbon "],"givenName":["S.","Claire","A.","E.","B.H.","T.R. "],"grant":["NE/N011570/1","PVE177-2012","NE/L002434/1"],"identifier":"b2b5498c-8eef-44b0-9610-844784f9f16b","incomingCitationCount":2,"keyword":["Reflectance","charcoal","fire","tropical forest"],"keywordsOther":["Reflectance","charcoal","fire","tropical forest"],"licence":"Open government licence","lineage":"The charcoals pieces were collected from soil surface (0-5 cm depth) in tropical rainforest plots in Feliz Natal (southern Brazil, n= 75) and Pucallpa (Peru, n=14). Any organic material or soil was removed from the samples using the hydrogen peroxide (H2O2) digestion method, leaving the charcoal clean. After that, the samples were embedded in resin and then polished and then measured for reflectance in the Exeter Fire Lab.","locations":["POLYGON((-80.947 -9.449, -80.947 1.23, -56.338 1.23, -56.338 -9.449, -80.947 -9.449))"],"metadataDate":"2026-06-29T16:44:11.000Z","orcid":["https://orcid.org/0000-0001-7992-2179","https://orcid.org/0000-0003-3496-8290","https://orcid.org/0000-0002-2133-2886","https://orcid.org/0000-0002-6446-3376","https://orcid.org/0000-0002-6359-6281","https://orcid.org/0000-0002-6631-7962"],"organisation":["Met Office","University of Exeter","Universidade do Estado de Mato Grosso","NERC EDS Environmental Information Data Centre"],"publicationDate":"2023-07-20T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b2b5498c-8eef-44b0-9610-844784f9f16b","10.5285/b2b5498c-8eef-44b0-9610-844784f9f16b","doi:10.5285/b2b5498c-8eef-44b0-9610-844784f9f16b"],"resourceType":"Dataset","rightsHolder":["University of Exeter"],"ror":["https://ror.org/01ch2yn61","https://ror.org/03yghzc09","https://ror.org/02cbymn47","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset includes charcoal reflectance measurements. The charcoal pieces were collected from the soil surface in tropical rainforest plots in Feliz Natal (southern Brazil, n= 75) and Pucallpa (Peru, n=14) in 2015. In total, 89 charcoal pieces were measured for reflectance.…","state":"published","title":"Reflectance of charcoal from tropical rainforest plots in southern Amazonia, Brazil and southwestern Amazonia, Peru, 2015","version":1.0,"view":["public","clwe"]},{"authorAffiliation":["Cranfield University"],"authorFamilyName":["Hibdige","Larionov","Harris","Pawlett"],"authorFullName":["Hibdige, S.","Larionov, A.","Harris, J.","Pawlett, M."],"authorGivenName":["Samuel","Alexey","Jim","Mark"],"authorOrcid":["https://orcid.org/0000-0001-9266-4979","https://orcid.org/0000-0001-8060-0345"],"authorRor":["https://ror.org/05cncd958"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset comprises Alpha diversity and functional metrics estimations of soil bacterial and fungal communities and soil chemical properties (pH and electrical conductivity) in samples collected from 60 calcareous grassland restoration sites and a further six wildcard sites made up of ancient grasslands and rewilding sites, all in southern England. Samples were taken in 2021. \nSoil samples were collected using a 10cm soil corer, with accompanying information on site management during the sampling year as well as the historic age of the restoration site. DNA was extracted from the soil and sequenced for metagenomic analysis.","documentType":"GEMINI_DOCUMENT","familyName":["Hibdige","Larionov","Harris","Pawlett"],"fullName":["Samuel Hibdige","Hibdige, S.","Larionov, A.","Harris, J.","Pawlett, M."],"funder":["Natural Environment Research Council"],"givenName":["Samuel","Alexey","Jim","Mark"],"grant":["NE/V006444/1"],"identifier":"8c8a836c-2117-4a36-bc1b-214b40e66feb","incomingCitationCount":0,"keyword":["Biodiversity","Soil","Metagenomics","soil chemistry"],"keywordsOther":["Metagenomics","soil chemistry"],"keywordsTheme":["Biodiversity","Soil"],"licence":"Open government licence","lineage":"Fieldwork instrumentation used.  Basic field instruments were used to mark plot positions (GPS), set out the plots (20m tape measures), and collect soil samples (soil corer).\nMethods of collection and how data was values were recorded. In each site, five circular plots (radius 10m) were established with their centres randomly decided in advance using ArcGIS. Sampling of our restoration's sites occurred in 2021. Some were subsequently resampled in 2023.  Data processing and lab-based techniques continued into 2024. Soil: Five 10cm soil cores were collected using a 'W' sampling strategy covering a 60 x 60 m area in the centre of restoration grassland fields from each plot and stored at 4°C. Soil was sieved to 2mm, samples were split between storage at -20°C for DNA extraction and 4°C. Site characteristics:  Information on site management and history (including site age) was recorded based on management agreements for agri-environment schemes. Surrounding land use cover was recorded based on the UKCEH Landcover Map.\nNature and units of recorded variables and processing steps.  \npH: Soil was air dried and the five samples per site were pooled together. Ultrapure water was added and the samples agitated before values were measured with a pH probe. The pH reading was considered stable when the value did not vary by more than 0.02 units over five seconds. Electrical Conductivity: Soil was air dried and the five samples per site were pooled together. Ultrapure water was added and the samples agitated, centrifuged and filtered. Electrical conductivity was then measured using a probe and recorded in uS. Alpha diversity metrics: DNA was extracted from the soil using enzyme extraction and sequenced by a third-party company (Novogene) using a paired-end Illumina platform, (NovaSeq 6000) using well established amplicon regions. The data was processed using QIIME2 to generate feature tables per sample. Taxonomy was assigned to the amplicons using Greengenes 2 (bacteria) and UNITE dynamic (Fungal). Shannon, Faith PD and chao1 were calculated from the QIIME2 feature tables and the assigned taxonomy. Functional metrics (bacteria): PicrusT2 was used to estimate Enzyme Commission numbers (EC), KEGG orthologs (KO) and MEtaCyc pathway predictions were calculated using default parameters using EPA-NG to place sequences into the required reference phylogeny. QIIME2 was then used to calculate Shannon entropy and Chao1 from the pathway abundance feature tables from PicrusT2. Functional metrics (fungi): Funguild was used to estimate guild associations per sample. QIIME2 was then used to calculate Shannon entropy and Chao1 from the guild tables. Former land-use is categorical with 4 levels: Industrial (n=30), Agricultural (n=30), Ancient Woodland (n=4) and Rewilding (n=2).\nFurther information can be found within the supporting documentation.\nQuality control/assessment applied to the data Data was collected in the field using pre-prepared data sheets. Data sheets were checked both visually before digital data entry, and any suspected errors were checked with raw field data sheets.  Extracted DNA was quantified on Nanodrop spectrophotometer to measure ng/μl, 260/280, and 260/230 ratios before being sent for sequencing. The sequencing company (Novogene) provided their own quality control before and after sequencing and any that failed were re-extracted and re-sequenced. The received sequenced reads were examined using FAST-QC and MULTI-QC and trimmed accordingly with cut adapt. The reads were then quality filtered and processed using DADA2. Rarefactions plots were generated to examine feature counts to ensure feature tables were of expected quality.\nLimitations on the data's reliability.  Amplicon sequencing is largely only accurate to genus level and taxonomy assignment is limited by database curation. Functional analysis based on amplicon sequencing is less accurate that shotgun sequencing as functionality is inferred.","locations":["POLYGON((-4.219 50.149, -4.219 52.51, 1.978 52.51, 1.978 50.149, -4.219 50.149))"],"metadataDate":"2026-06-29T17:11:56.000Z","orcid":["https://orcid.org/0000-0001-9266-4979","https://orcid.org/0000-0001-8060-0345"],"organisation":["Cranfield University","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-03-16T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8c8a836c-2117-4a36-bc1b-214b40e66feb","10.5285/8c8a836c-2117-4a36-bc1b-214b40e66feb","doi:10.5285/8c8a836c-2117-4a36-bc1b-214b40e66feb"],"resourceType":"Dataset","rightsHolder":["Cranfield University"],"ror":["https://ror.org/05cncd958","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset comprises Alpha diversity and functional metrics estimations of soil bacterial and fungal communities and soil chemical properties (pH and electrical conductivity) in samples collected from 60 calcareous grassland restoration sites and a further six wildcard…","state":"published","title":"Soil metagenomics and chemical data from calcareous grassland restoration sites in England, 2021","topic":["0/Biodiversity/","0/Soil/"],"version":1.0,"view":["public","glenn"]}],"rows":12,"url":"http://catalogue.ceh.ac.uk:443/eidc/documents?rows=12&facet=grant%7C(NE/S005900/1%20OR%20NE/K016253/1%20OR%20NE/L002434/1%20OR%20NE/P012574/1%20OR%20NE/V006444/1)"}