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The data was generated in a laboratory at Stony Brook University New York and each test was conducted in 28.5 x 95mm plastic vials. Phenotype data was collected in 2015 and the final analysis was completed in 2021. Illumina libraries were sequenced at University of Oregon G3 Genomics Center, and the multiplexed shotgun genotyping (MSG) software was run at Janelia Research Campus Virginia.\n\nThe experiments were conducted to align the genotype of females with behavioural phenotype, female preference. Three test females were allowed to choose from three males of either species. ‘Choice’ was determined by copulation, and the species of ‘chosen’ male was recorded before gDNA was extracted from the female. \n\nStandard molecular biology was used to generate Illumina libraries from individual backcross females for sequencing. Deniz Erezyilmaz was responsible for data collection and interpretation. Those genomes with ambiguous genotypes at more than 25% of markers due to sparse reads/coverage were eliminated from the analysis.\n\nThe research was funded through NERC grant NE/S010351/1. Investigating the dual role of mate choice genes in behavioural isolation and hybridization.","documentType":"GEMINI_DOCUMENT","familyName":["Erezyilmaz","Lu"],"fullName":["Erezyilmaz, D.","Erezyilmaz, D.F.","Lu, K."],"funder":["Natural Environment Research Council"],"givenName":["Deniz","D.F.","K."],"grant":["NE/S010351/1"],"identifier":"871c537d-2a84-432f-8597-7e895e0ffdcb","incomingCitationCount":0,"keyword":["Drosophila simulans","Drosophila sechellia "],"keywordsOther":["Drosophila simulans","Drosophila sechellia "],"licence":"Open government licence","lineage":"The Drosophila simulans-sechellia backcross genotypes were obtained by Multiplexed Shotgun Genotyping (Andolfatto et al, 2011), and the files were thinned using David Stern’s (Janelia Research Campus) script, pull_thin (github.com/dstern/pull_thin) were obtained by two-choice assay, females choosing between D. simulans and D. sechellia males.\n\nStandard molecular biology was used to generate Illumina libraries from individual backcross females for sequencing, as described in: Andolfatto, P., Davison, D., Erezyilmaz, D., Hu, T.T., Mast, J., Sunayama-Morita, T., & Stern, D.L. (2011). Multiplexed shotgun genotyping for rapid and efficient genetic mapping. In Genome Research (Vol. 21, Issue 4, pp. 610–617). Cold Spring Harbor Laboratory. https://doi.org/10.1101/gr.115402.110","metadataDate":"2026-06-29T16:10:01.000Z","orcid":["https://orcid.org/0000-0001-8416-8561"],"organisation":["University of Oxford","State University of New York","NERC EDS Environmental Information Data Centre"],"publicationDate":"2022-04-13T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/871c537d-2a84-432f-8597-7e895e0ffdcb","10.5285/871c537d-2a84-432f-8597-7e895e0ffdcb","doi:10.5285/871c537d-2a84-432f-8597-7e895e0ffdcb"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/01q1z8k08","https://ror.org/04xw4m193"],"shortenedDescription":"The data resource contains Drosophila simulans-sechellia backcross female mate choice (phenotype) aligned with whole-genome genotypes of 692 female backcross progeny. The data was generated in a laboratory at Stony Brook University New York and each test was conducted…","state":"published","supplementalDescription":["Andolfatto, P., Davison, D., Erezyilmaz, D., Hu, T.T., Mast, J., Sunayama-Morita, T., & Stern, D.L. (2011). Multiplexed shotgun genotyping for rapid and efficient genetic mapping. In Genome Research (Vol. 21, Issue 4, pp. 610–617). Cold Spring Harbor Laboratory."],"title":"Genotype-phenotype association for mate choice in a Drosophila simulans-sechellia backcross population","version":1.0,"view":["public","danor"]},{"authorAffiliation":["University of Oxford","University of Groningen"],"authorFamilyName":["Erezyilmaz","Doubovetzky","Billeter","Goodwin"],"authorFullName":["Erezyilmaz, D.","Doubovetzky, N.","Billeter, J.C.","Goodwin, S.F."],"authorGivenName":["D.","N.","J.C.","S.F."],"authorOrcid":["https://orcid.org/0000-0001-8416-8561","https://orcid.org/0000-0001-6219-3125","https://orcid.org/0000-0001-7796-4068","https://orcid.org/0000-0002-0552-4140"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset provides measurements of the cuticular pheromone, 7,11-heptacosadiene of individual female vinegar flies. The purpose of the dataset is to compare the levels between two sibling species, Drosophila simulans and Drosophila sechellia. Single female virgins were isolated from males at eclosion, aged five days, and then washed in hexane to extract cuticular hydrocarbons. The extracts were analyzed by gas chromatography relative to an internal standard. ","documentType":"GEMINI_DOCUMENT","familyName":["Erezyilmaz","Doubovetzky","Billeter","Goodwin"],"fullName":["Erezyilmaz, D.","Doubovetzky, N.","Billeter, J.C.","Goodwin, S.F."],"funder":["Natural Environment Research Council"],"givenName":["D.","N.","J.C.","S.F."],"grant":["NE/S010351/1"],"identifier":"7abe787a-4561-4715-8b49-983faa4c0787","incomingCitationCount":0,"keyword":["Cuticular hydrocarbons","contact pheromone","long-chain fatty acids","Drosophila courtship","gas chromatography"],"keywordsOther":["Cuticular hydrocarbons","contact pheromone","long-chain fatty acids","Drosophila courtship","gas chromatography"],"licence":"Open government licence","lineage":"Drosophila females that were five days old were anaesthetised on ice for ten minutes. Individual female flies were then transferred to 150uL pure HPLC grade hexane within a 200uL glass vial that was fitted with a glass insert. The vial with the fly inside was vortexed to extract the hydrocarbons. Afterwards the fly was removed, the hexane extract was dried down under a gentle flow of nitrogen, and the vial was shipped to Groningen for gas chromatograph analysis. The retention time in minutes of each peak relative to an internal standard (C26), was used to measure size and identify 7,11-heptacosadiene. The area underneath each peak, relative to the standard was used to measure the quantity of 7,11-heptacosadiene. ChemStation software (Agilent technologies) was used to estimate area under the peak. ","metadataDate":"2026-06-29T16:54:57.000Z","orcid":["https://orcid.org/0000-0001-8416-8561","https://orcid.org/0000-0001-6219-3125","https://orcid.org/0000-0001-7796-4068","https://orcid.org/0000-0002-0552-4140"],"organisation":["University of Oxford","University of Groningen","NERC EDS Environmental Information Data Centre"],"publicationDate":"2023-02-20T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7abe787a-4561-4715-8b49-983faa4c0787","10.5285/7abe787a-4561-4715-8b49-983faa4c0787","doi:10.5285/7abe787a-4561-4715-8b49-983faa4c0787"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/04xw4m193"],"shortenedDescription":"This dataset provides measurements of the cuticular pheromone, 7,11-heptacosadiene of individual female vinegar flies. The purpose of the dataset is to compare the levels between two sibling species, Drosophila simulans and Drosophila sechellia. Single female virgins…","state":"published","title":"Levels of the pheromone 7,11-heptacosadiene in the sibling species Drosophila simulans and Drosophila sechellia","version":1.0,"view":["public","glenn"]},{"authorAffiliation":["University of Reading","Helmholtz Centre for Environmental Research","University of Glasgow","University of Southampton","University of Nottingham"],"authorFamilyName":["Dhandapani","Shaw","McNeil","Lu","Booth","Corbett","Lunn","Nightingale","Niu","Roose","John","Lin","Adekanmbi","Dudley","Holt","O'Brien","Frost","Xiao"],"authorFullName":["Dhandapani, S.","Shaw, L.","McNeil, T.","Lu, B.","Booth, O.","Corbett, L.","Lunn, J.","Nightingale, A.","Niu, X.","Roose, T.","John, J.","Lin, H.","Adekanmbi, A.A.","Dudley, A.","Holt, L.","O'Brien, M.","Frost, H.","Xiao, F."],"authorGivenName":["Selva","Liz","Thomas","Bingyuan","Oliver","Luci","James","Adrian","Xize","Tiina","Jiji","Hanqing","Adetunji Alex","Anne","Laura","Marta","Harry","Fengjuan"],"authorOrcid":["https://orcid.org/0000-0001-8522-5177","https://orcid.org/0000-0002-4985-7078","https://orcid.org/0009-0001-8453-6317","https://orcid.org/0000-0003-2445-4827","https://orcid.org/0000-0003-3149-6152","https://orcid.org/0000-0001-8710-1063","https://orcid.org/0000-0003-3379-4161","https://orcid.org/0009-0007-1363-6031","https://orcid.org/0000-0002-3117-7955"],"authorRor":["https://ror.org/05v62cm79","https://ror.org/000h6jb29","https://ror.org/00vtgdb53","https://ror.org/01ryk1543","https://ror.org/01ee9ar58"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset captures one year of seasonal biogeochemical monitoring in the root zones of English oak (Quercus robur) trees affected by Acute Oak Decline (AOD), Chronic Oak Decline (COD), and healthy control trees in Writtle Woodlands, Essex, UK. Measurements include: (1) total soil nutrients at the start and end of the sampling period (2) Monthly bioavailable soil nutrients, moisture, pH, conductivity, temperature in surface soil (0-10 cm). (3) Seasonal bioavailable soil nutrients at multiple depths (0-40 cm), (4) seasonal litterfall mass and composition (leaves, seeds, wood, flowers), (5) litter chemistry (i.e., C, N, pH, and metals) (6) greenhouse gas (GHG) fluxes (CO2, CH4, N2O) from static chambers, and (7) microbial community structure derived from phospholipid fatty acid (PLFA) profiling. Data were collected between October 2022 and August 2023 at three replicated trees per health status category (AOD, COD, healthy). Measurements also include: (8) High frequency nitrate concentrations and soil moisture content obtained using in situ sensors (one sensor per tree per health status) and daily rainfall totals. The data enable assessment of temporal changes in soil chemistry, litter dynamics, microbial communities, and GHG fluxes in relation to tree health.","documentType":"GEMINI_DOCUMENT","familyName":["Shaw","Dhandapani","McNeil","Lu","Booth","Corbett","Lunn","Nightingale","Niu","Roose","John","Lin","Adekanmbi","Dudley","Holt","O'Brien","Frost","Xiao"],"fullName":["Shaw, L.","Dhandapani, S.","McNeil, T.","Lu, B.","Booth, O.","Corbett, L.","Lunn, J.","Nightingale, A.","Niu, X.","Roose, T.","John, J.","Lin, H.","Adekanmbi, A.A.","Dudley, A.","Holt, L.","O'Brien, M.","Frost, H.","Xiao, F."],"funder":["Natural Environment Research Council"],"givenName":["L.","Selva","Liz","Thomas","Bingyuan","Oliver","Luci","James","Adrian","Xize","Tiina","Jiji","Hanqing","Adetunji Alex","Anne","Laura","Marta","Harry","Fengjuan"],"grant":["NE/T010762/1","NE/T010584/1"],"identifier":"26bbd3ed-adbd-464c-b31a-bbfb7052e9bf","incomingCitationCount":0,"keyword":["Environmental survey","In situ nutrient sensor","Litter","nitrate","Oak Decline","Quercus robur","Soil"],"keywordsOther":["In situ nutrient sensor","Litter","nitrate","Oak Decline","Quercus robur","Soil"],"keywordsTheme":["Environmental survey"],"licence":"Non-Open government licence","lineage":"Soil and litter were sampled monthly or seasonally from fixed positions around nine trees (three per health class). Laboratory analyses included inorganic nitrogen by KCl extraction and Skalar SAN++ autoanalyser, available elements by Mehlich-3 extraction and ICP-OES (Perkin Elmer Avio 550 Max), total C and N by Flash 2000 Elemental Analyzer, and microbial community profiling by PLFA-GC-FID. Greenhouse gas fluxes (CO2, CH4, N2O) were measured using static chambers and gas chromatography.\n\nHigh-frequency soil nitrate and moisture were monitored using a custom-built Droplet Microfluidic-Based In Situ Analyzer (University of Southampton) installed at 10 cm depth. The analyzer was laboratory-calibrated, maintained monthly, and field-recalibrated using nitrate standards.\n\nQuality control included routine calibration and in-house reference materials.","locations":["POLYGON((0.37 51.692, 0.37 51.696, 0.373 51.696, 0.373 51.692, 0.37 51.692))"],"metadataDate":"2026-06-29T18:27:53.000Z","orcid":["https://orcid.org/0000-0001-8522-5177","https://orcid.org/0000-0002-4985-7078","https://orcid.org/0009-0001-8453-6317","https://orcid.org/0000-0003-2445-4827","https://orcid.org/0000-0003-3149-6152","https://orcid.org/0000-0001-8710-1063","https://orcid.org/0000-0003-3379-4161","https://orcid.org/0009-0007-1363-6031","https://orcid.org/0000-0002-3117-7955"],"organisation":["University of Reading","Helmholtz Centre for Environmental Research","University of Glasgow","University of Southampton","University of Nottingham","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-04-30T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/26bbd3ed-adbd-464c-b31a-bbfb7052e9bf","10.5285/26bbd3ed-adbd-464c-b31a-bbfb7052e9bf","doi:10.5285/26bbd3ed-adbd-464c-b31a-bbfb7052e9bf"],"resourceType":"Dataset","rightsHolder":["University of Reading","University of Southampton"],"ror":["https://ror.org/05v62cm79","https://ror.org/000h6jb29","https://ror.org/00vtgdb53","https://ror.org/01ryk1543","https://ror.org/01ee9ar58","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset captures one year of seasonal biogeochemical monitoring in the root zones of English oak (Quercus robur) trees affected by Acute Oak Decline (AOD), Chronic Oak Decline (COD), and healthy control trees in Writtle Woodlands, Essex, UK. Measurements include:…","state":"published","supplementalDescription":["This dataset forms the basis of the results presented in the following pre-print or published paper","Bingyuan Lu, James Lunn, Ken Yeung, Selva Dhandapani, Liam Carter, Tiina Roose, Liz Shaw, AdrianNightingale, Xize Niu, Droplet Microfluidic-Based In Situ Analyzer for Monitoring Free Nitrate in Soil.Environmental Science & Technology 2024 58 (6), 2956-2965"],"supplementalName":["Dhandapani, S., McNeil, T., Lu, B., Booth, O., Corbett, L., Lunn, J., Nightingale, A., Niu, X., Roose, T., John, J.,Lin, H., Adekanmbi, A.A., Shaw, L.J. Forest biogeochemical monitoring indicates altered microbial communities,macronutrient availability, CO2 emissions and litter chemistry in root zone soil of oak trees with Acute Declinesymptoms. bioRxiv 2025.04.22.650028","This dataset forms the basis of the results presented in the following pre-print or published paper"],"title":"Soil physico-chemistry, high-frequency soil nitrate, PLFA microbial communities, greenhouse gas emissions and litter quantity and quality under oak decline at Writtle Woodlands, Essex, UK, 2022-2023","topic":["0/Environmental survey/"],"version":1.0,"view":["public","tinzha"]},{"authorAffiliation":["University of Leeds","Swedish University of Agricultural Sciences","Swansea University"],"authorFamilyName":["Mugabo","Gilljam","Petteway","Hall","Yuan","Fowler","Sait"],"authorFullName":["Mugabo, M.","Gilljam, D.","Petteway, L.","Hall, E.","Yuan, C.","Fowler, M.S.","Sait, S.M."],"authorGivenName":["M.","D.","L.","E.","C.","M.S.","S. M."],"authorOrcid":["https://orcid.org/0000-0002-2346-2617","https://orcid.org/0000-0003-1544-0407"],"authorRor":["https://ror.org/024mrxd33","https://ror.org/02yy8x990","https://ror.org/053fq8t95"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains information on life history variation and population dynamics in response to coloured environmental variation in the laboratory model system comprised of the moth Plodia interpunctella (Pyralidae; Hübner) and the parasitoid wasp Venturia canescens (Ichneumonidae; Gravenhorst). \n\nData were collected from two complementary experiments investigating the effects of daily coloured temperature fluctuations on individual life history variation (single-generation life history experiment) and population dynamics (multi-generation microcosm experiment) in both species. In both experiments, the effects of three types of coloured noise were investigated and compared to constant temperature conditions: blue noise (characterized by rapid (negatively autocorrelated) fluctuations), red noise (characterized by slow (positively autocorrelated) fluctuations) and white noise (characterized by random fluctuations). The life history experiment lasted 56 days and the microcosm experiment lasted 310 days.","documentType":"GEMINI_DOCUMENT","familyName":["Mugabo","Gilljam","Petteway","Hall","Yuan","Fowler","Sait"],"fullName":["Mugabo, M.","Gilljam, D.","Petteway, L.","Hall, E.","Yuan, C.","Fowler, M.S.","Sait, S.M."],"funder":["Natural Environment Research Council"],"givenName":["Marianne","M.","D.","L.","E.","C.","M.S.","S. M."],"grant":["NE/N00213X/1"],"identifier":"ef7e47ae-bd28-4449-8587-8e5dda4ccfee","incomingCitationCount":0,"keyword":["Animal behaviour","Venturia canescens","Plodia interpunctella","Indian Meal Moth"],"keywordsOther":["Venturia canescens","Plodia interpunctella","Indian Meal Moth"],"keywordsTheme":["Animal behaviour"],"licence":"Open government licence","lineage":"A single-generation life history experiment and a multi-generation microcosm experiment was carried out in the Plodia interpunctella-Venturia canescens host-parasitoid laboratory model system to investigate the effects of coloured temperature fluctuations on life history variation and population dynamics in a trophic interaction. The colour of environmental variation refers to its temporal (or spatial) structure. High frequencies (rapid fluctuations) dominate in blue environments, low frequencies (slow fluctuations) dominate in red environments and there is no dominant frequency in white environments. \n\nMore details of the material and methods can be found in the Supplementary information.","metadataDate":"2026-06-29T17:12:37.000Z","orcid":["https://orcid.org/0000-0002-2346-2617","https://orcid.org/0000-0003-1544-0407"],"organisation":["University of Leeds","Swedish University of Agricultural Sciences","Swansea University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"publicationDate":"2019-08-01T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/ef7e47ae-bd28-4449-8587-8e5dda4ccfee","10.5285/ef7e47ae-bd28-4449-8587-8e5dda4ccfee","doi:10.5285/ef7e47ae-bd28-4449-8587-8e5dda4ccfee"],"resourceType":"Non-geographic dataset","ror":["https://ror.org/024mrxd33","https://ror.org/02yy8x990","https://ror.org/053fq8t95","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains information on life history variation and population dynamics in response to coloured environmental variation in the laboratory model system comprised of the moth Plodia interpunctella (Pyralidae; Hübner) and the parasitoid wasp Venturia canescens…","state":"published","supplementalDescription":["Gilljam, D., Knape, J., Lindén, A., Mugabo, M., Sait, S. M., & Fowler, M. S. (2018). The colour of environmental fluctuations associated with terrestrial animal population dynamics. Global Ecology and Biogeography, 28(2), 118–130. "],"title":"Effects of coloured environmental noise on life history variation and population dynamics in the Plodia-Venturia trophic interaction","topic":["0/Animal behaviour/"],"version":1.0,"view":["public","clwe"]},{"authorAffiliation":["University of Leeds","Universidade do Estado de Mato Grosso"],"authorFamilyName":["Werkmeister","Galbraith","Docherty","Borges","da Rocha","da Silva","Marimon","Marimon-Junior","Phillips","Gloor"],"authorFullName":["Werkmeister, G.A.","Galbraith, D.","Docherty, E.","Borges, C.S.","da Rocha, J.M.","da Silva, P.A.","Marimon, B.S.","Marimon-Junior, B.H.","Phillips, O.L.","Gloor, E."],"authorGivenName":["G.A.","D.","E.","C.S.","J.M.","P.A.","B.S.","B.H.","O.L."],"authorOrcid":["https://orcid.org/0000-0001-5700-6081","https://orcid.org/0000-0002-5555-4823","https://orcid.org/0000-0003-1236-5499","https://orcid.org/0000-0002-6962-6699","https://orcid.org/0000-0001-7244-0740","https://orcid.org/0000-0003-3105-2914","https://orcid.org/0000-0002-6359-6281","https://orcid.org/0000-0002-8993-6168","https://orcid.org/0000-0002-9384-6341"],"authorRor":["https://ror.org/024mrxd33","https://ror.org/02cbymn47"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"The data include temperature and relative humidity (RH) values recorded every minute inside and outside whole-tree, passive heating, open top chambers. Respiration and photosynthesis rates were recorded (at incremental controlled leaf temperatures) on leaves on study individuals of Erythroxylum suberosum growing inside and outside the chambers.\n\nTemperature, RH, and solar irradiance were measured every fifteen minutes by local weather station are also included for the whole testing period, June to September 2020, in an area of typical Cerrado, Bacaba Park, Nova Xavantina, Brazil.\n\nThe data were collected to enable development of methodology and testing of, a novel in situ passive heating method for evaluating whole-tree responses to daytime warming in remote environments using an open top chamber.","documentType":"GEMINI_DOCUMENT","familyName":["Werkmeister","Galbraith","Docherty","Borges","da Rocha","da Silva","Marimon","Marimon-Junior","Phillips","Gloor"],"fullName":["Werkmeister, G.A.","Galbraith, D.","Docherty, E.","Borges, C.S.","da Rocha, J.M.","da Silva, P.A.","Marimon, B.S.","Marimon-Junior, B.H.","Phillips, O.L.","Gloor, E."],"funder":["Natural Environment Research Council","Royal Society","CNPq"],"givenName":["G.A.","D.","E.","C.S.","J.M.","P.A.","B.S.","B.H.","O.L."],"grant":["NE/L002574/1","NE/S011811/1","NE/N012542/1","ICA\\R1\\180100","PELD/441244/2016-5"],"identifier":"2dcc08e9-d8e6-4675-b78d-a318efc799d8","incomingCitationCount":1,"keyword":["Erythroxylum suberosum","relative humidity","in situ heating ","passive heating ","open top chambers","Cerrado","respiration","photosynthesis","atmospheric humidity","air temperature"],"keywordsOther":["Erythroxylum suberosum","relative humidity","in situ heating ","passive heating ","open top chambers","Cerrado","respiration","photosynthesis","atmospheric humidity","air temperature"],"licence":"Open government licence","lineage":"Internal and ambient (treatment and control respectively) air temperatures and RHs were measured by Adafruit DHT22 sensors housed inside commercial solar radiation shields (Windspeed Ltd.) and recorded to SD card by Arduino, with automatic calibration using values calculated during previous sensor testing. Sensors were placed one inside and one outside any structure being tested, and rotated between them during the testing period. Reference temperatures and RHs were measured by a local WatchDog weather station, with no extra calibration carried out. All times were converted to local time (BRT = UTC -3). \nPhotosynthesis and dark respiration rates were measured at incremental leaf temperatures between 20 and 50°C using two LI-6400XT portable photosynthesis systems (LI-COR Biosciences Inc.), one with a fluorometer (6400-40) chamber head and one with an LED (6400-02B) chamber head (for photosynthesis and respiration measurements respectively). Photosynthesis and respiration were measured simultaneously between 08:00 and 11:30, on two different (healthy, fully expanded, and equally mature) leaves on the same individual. Respiration leaves were covered at dawn and kept in darkness for at least 40min before testing; photosynthesis leaves were exposed to direct sunlight for at least 40min prior to testing.\n","locations":["POLYGON((-52.357 -14.717, -52.357 -14.701, -52.343 -14.701, -52.343 -14.717, -52.357 -14.717))"],"metadataDate":"2026-06-29T16:59:27.000Z","orcid":["https://orcid.org/0000-0001-5700-6081","https://orcid.org/0000-0002-5555-4823","https://orcid.org/0000-0003-1236-5499","https://orcid.org/0000-0002-6962-6699","https://orcid.org/0000-0001-7244-0740","https://orcid.org/0000-0003-3105-2914","https://orcid.org/0000-0002-6359-6281","https://orcid.org/0000-0002-8993-6168","https://orcid.org/0000-0002-9384-6341"],"organisation":["University of Leeds","Universidade do Estado de Mato Grosso","NERC EDS Environmental Information Data Centre"],"publicationDate":"2023-06-22T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/2dcc08e9-d8e6-4675-b78d-a318efc799d8","10.5285/2dcc08e9-d8e6-4675-b78d-a318efc799d8","doi:10.5285/2dcc08e9-d8e6-4675-b78d-a318efc799d8"],"resourceType":"Dataset","rightsHolder":["University of Leeds"],"ror":["https://ror.org/024mrxd33","https://ror.org/02cbymn47","https://ror.org/04xw4m193"],"shortenedDescription":"The data include temperature and relative humidity (RH) values recorded every minute inside and outside whole-tree, passive heating, open top chambers. Respiration and photosynthesis rates were recorded (at incremental controlled leaf temperatures) on leaves on study…","state":"published","title":"Temperature and humidity data supporting use of an in situ passive heating method, and associated whole tree responses, Cerrado, Brazil, 2020","version":1.0,"view":["public","shar1"]},{"authorAffiliation":["University of Oxford","State University of New York Downstate"],"authorFamilyName":["Erezyilmaz","Lu"],"authorFullName":["Erezyilmaz, D.F.","Lu, K."],"authorGivenName":["D.F.","K. "],"authorOrcid":["https://orcid.org/0000-0001-8416-8561"],"authorRor":["https://ror.org/052gg0110","https://ror.org/01q1z8k08"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"The data resource contains Drosophila simulans backcross female mate choice (phenotype) aligned with whole-genome genotypes of 784 female backcross progeny. The data were generated in a laboratory at Stony Brook University, New York and each test was conducted in 28.5 x 95mm plastic vials. Phenotype data was collected in 2015 and the final analysis was completed in 2021. Illumina libraries were sequenced at University of Oregon G3 Genomics Center, and the multiplexed shotgun genotyping (MSG) software was run at Janelia Research Campus, Virginia. The experiments were conducted to align the genotype of females with behavioural phenotype, female preference. Three test females were allowed to choose from three males of either species. ‘Choice’ was determined by copulation, and the species of ‘chosen’ male was recorded before gDNA was extracted from the female.\n\nStandard molecular biology was used to generate Illumina libraries from individual backcross females for sequencing. Deniz Erezyilmaz was responsible for data collection and interpretation. Those genomes with incomplete or inconsistent genomes due to sparse reads/coverage were eliminated from the analysis.\n\nThe research was funded through NERC grant NE/S010351/1. Investigating the dual role of mate choice genes in behavioural isolation and hybridization.","documentType":"GEMINI_DOCUMENT","familyName":["Erezyilmaz","Lu"],"fullName":["Erezyilmaz, D.","Erezyilmaz, D.F.","Lu, K."],"funder":["Natural Environment Research Council"],"givenName":["Deniz","D.F.","K. "],"grant":["NE/S010351/1"],"identifier":"8dde3529-1cf7-4b0f-907d-a1631f38afd7","incomingCitationCount":1,"keyword":["QTL analysis","Assortative Hybridization","Quantitative trait locus (QTL) analysis","hybridisation","speciation","assortative mating","Drosophila simulans"],"keywordsOther":["QTL analysis","Assortative Hybridization","Quantitative trait locus (QTL) analysis","hybridisation","speciation","assortative mating","Drosophila simulans"],"licence":"Open government licence","lineage":"The Drosophila simulans backcross genotypes were obtained by Multiplexed Shotgun Genotyping (Andolfatto et al, 2011), and the files were thinned using David Stern’s (Janelia Research Campus) script, pull_thin (Github) were obtained by two-choice assay, females choosing between D. simulans and D. sechellia males. \n\nStandard molecular biology was used to generate Illumina libraries from individual backcross females for sequencing., as described in Andolfatto, P., Davison, D., Erezyilmaz, D., Hu, T.T., Mast, J., Sunayama-Morita, T., & Stern, D.L. (2011). Multiplexed shotgun genotyping for rapid and efficient genetic mapping. In Genome Research (Vol. 21, Issue 4, pp. 610–617). Cold Spring Harbor Laboratory.  https://doi.org/10.1101/gr.115402.110","metadataDate":"2026-06-29T18:03:37.000Z","orcid":["https://orcid.org/0000-0001-8416-8561"],"organisation":["University of Oxford","State University of New York Downstate","NERC EDS Environmental Information Data Centre"],"publicationDate":"2022-04-13T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8dde3529-1cf7-4b0f-907d-a1631f38afd7","10.5285/8dde3529-1cf7-4b0f-907d-a1631f38afd7","doi:10.5285/8dde3529-1cf7-4b0f-907d-a1631f38afd7"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/01q1z8k08","https://ror.org/04xw4m193"],"shortenedDescription":"The data resource contains Drosophila simulans backcross female mate choice (phenotype) aligned with whole-genome genotypes of 784 female backcross progeny. The data were generated in a laboratory at Stony Brook University, New York and each test was conducted in 28.5…","state":"published","supplementalDescription":["Andolfatto, P., Davison, D., Erezyilmaz, D., Hu, T.T., Mast, J., Sunayama-Morita, T., & Stern, D.L. (2011). Multiplexed shotgun genotyping for rapid and efficient genetic mapping. In Genome Research (Vol. 21, Issue 4, pp. 610–617). Cold Spring Harbor Laboratory."],"title":"Genotype-phenotype association for mate choice in progeny of Drosophila simulans backcross","version":1.0,"view":["public","danor"]},{"authorAffiliation":["University of Oxford","State University of New York Downstate"],"authorFamilyName":["Erezyilmaz","Lu"],"authorFullName":["Erezyilmaz, D.F.","Lu, K."],"authorGivenName":["D.F.","K. "],"authorOrcid":["https://orcid.org/0000-0001-8416-8561"],"authorRor":["https://ror.org/052gg0110","https://ror.org/01q1z8k08"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"The dataset presents data on female mate choice totals for different species pair combinations. Data are presented for wild types and inbred lines of  Drosophila simulans and Drosophilia sechellia females. Most of the data was generated in a laboratory at Stony Brook University, with some at Oxford University. Each test was conducted in 28.5 x 95mm plastic vials.\n\nData was collected at different points between 2014 and 2021 by the lead data author.\n\nThe work was conducted on mate choice preferences to determine how preferences vary between strains, species and among hybrids.\n\nWork was funded under NERC grant NERC NE/S010351/1. Investigating the dual role of mate choice genes in behavioural isolation and hybridization.\n","documentType":"GEMINI_DOCUMENT","familyName":["Erezyilmaz","Lu"],"fullName":["Erezyilmaz, D.F.","Lu, K."],"funder":["Natural Environment Research Council"],"givenName":["D.F.","K. "],"grant":["NE/S010351/1"],"identifier":"361621ad-6487-47a4-bf8b-00f78705e593","incomingCitationCount":0,"keyword":["Animal behaviour","Drosophila simulans","Drosophilia sechellia","animal behaviour"],"keywordsOther":["Drosophila simulans","Drosophilia sechellia","animal behaviour"],"keywordsTheme":["Animal behaviour"],"licence":"Open government licence","lineage":"Three tester female were given the choice between D.  sechellia  and D. simulans males. Courting flies were watched for four hours. Once the first pair mated, the vial was moved to -20C until the copulating pair was frozen. The male species was determined by examining the male genitalia, which is distinct for  D.  sechellia  and D. simulans males.","metadataDate":"2026-06-29T18:25:23.000Z","orcid":["https://orcid.org/0000-0001-8416-8561"],"organisation":["NERC EDS Environmental Information Data Centre","University of Oxford","State University of New York Downstate"],"publicationDate":"2022-07-19T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/361621ad-6487-47a4-bf8b-00f78705e593","10.5285/361621ad-6487-47a4-bf8b-00f78705e593","doi:10.5285/361621ad-6487-47a4-bf8b-00f78705e593"],"resourceType":"Non-geographic dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/04xw4m193","https://ror.org/052gg0110","https://ror.org/01q1z8k08"],"shortenedDescription":"The dataset presents data on female mate choice totals for different species pair combinations. Data are presented for wild types and inbred lines of  Drosophila simulans and Drosophilia sechellia females. Most of the data was generated in a laboratory at Stony Brook…","state":"published","title":"Assortative mating in Drosophila simulans and Drosophilia sechellia females","topic":["0/Animal behaviour/"],"version":1.0,"view":["public","danor"]}],"rows":20,"url":"http://catalogue.ceh.ac.uk:443/eidc/documents?facet=grant%7C(NE/S010351/1%20OR%20NE/T010762/1%20OR%20NE/N012542/1%20OR%20NE/N00213X/1)"}