{"numFound":8,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CCardiff+University&facet=resourceStatus%7CAvailable","results":[{"publicationDate":"2017-09-20T00:00:00.000+00:00","authorAffiliation":["Cardiff University"],"authorGivenName":["H.C.","M.W.","S.","T.H."],"authorFamilyName":["MacDonald","Bruford","Ormerod","Jones"],"authorFullName":["MacDonald, H.C.","Bruford, M.W.","Ormerod, S.","Jones, T.H."],"authorOrcid":["https://orcid.org/0000-0002-8174-302X"],"authorRor":["https://ror.org/03kk7td41"],"catalogue":"eidc","description":"The resource consists of genotype data (genetic constitution of an individual organism) for three freshwater macroinvertebrate species, Amphinemura sulcicollis, Isoperla grammatica and Baetis rhodani collected at sites in upland Wales during May 2012 and May 2013. New nucleotide tandem repeats in DNA sequences i.e. Novel microsatellites were developed for this project so that genetic analysis could be carried out within the three species. Extra data on how microsatellite scores were grouped i.e. binned into unique alleles is provided, to aid replication. The data was generated for Hannah Macdonald's PhD thesis: to study genetic structure and diversity, demographic species history and resilience in freshwater ecosystems. \n\nThe work was carried out under Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) project (Grant reference NERC NE/J014818/1). DURESS was funded by the Natural Environment Research Council (NERC) under the Biodiversity and Ecosystem Service Sustainability (BESS) programme.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J014818/1"],"identifier":"27da4400-9835-4241-9df9-a3b598f8d274","incomingCitationCount":0,"givenName":["Hannah","H.C.","M.W.","S.","T.H."],"familyName":["MacDonald","Bruford","Ormerod","Jones"],"fullName":["MacDonald, H.","MacDonald, H.C.","Bruford, M.W.","Ormerod, S.","Jones, T.H."],"keyword":["Diversity of Upland Rivers for Ecosystem Service Sustainability (DURESS)","Amphinemura sulcicollis","Isoperla grammatica","Baetis rhodani"],"keywordsProject":["Diversity of Upland Rivers for Ecosystem Service Sustainability (DURESS)"],"keywordsOther":["Amphinemura sulcicollis","Isoperla grammatica","Baetis rhodani"],"licence":"Open government licence","lineage":"Samples of each invertebrate were collected by kicksampling in May in 2012 and 2013, samples were sorted and identified to genus level on site and stored in absolute ethanol. In the laboratory each larva was identified to species level using Elliott et al. (1988) and Hynes (1977). DNA was then extracted from tissue samples (see supporting information for extraction methods). Baetis rhodani samples contained cryptic species which had to be removed before genotyping, no cryptic species were identified for Amphinemura sulcicollis or Isoperla grammatica. Samples were sent for fragment analysis (Dundee Biosciences, UK) using ROX500 as the internal size standard. Fragment analysis products were visualised and scored using Genemarker v 1.91 (Holland and Parson 2011). These results were downloaded from Genemarker and allele sizes were binned by hand using the 'Binning' information (provided in the metadata) in an Excel spreadsheet. The data were then complied into master Excel spreadsheets for each invertebrate. The data were then exported as comma separated value files for ingestion into the EIDC.","locations":["POLYGON((-4.073 51.921, -4.073 53.123, -3.08 53.123, -3.08 51.921, -4.073 51.921))"],"orcid":["https://orcid.org/0000-0002-8174-302X"],"organisation":["Cardiff University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/27da4400-9835-4241-9df9-a3b598f8d274","10.5285/27da4400-9835-4241-9df9-a3b598f8d274"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Cardiff University"],"ror":["https://ror.org/03kk7td41","https://ror.org/04xw4m193"],"state":"published","title":"Genotype data for three freshwater macroinvertebrate species in upland Wales, UK (2012-2013)","version":1.0,"view":["public","danor"],"shortenedDescription":"The resource consists of genotype data (genetic constitution of an individual organism) for three freshwater macroinvertebrate species, Amphinemura sulcicollis, Isoperla grammatica and Baetis rhodani collected at sites in upland Wales during May 2012 and May 2013. New..."},{"publicationDate":"2025-01-27T00:00:00.000+00:00","authorAffiliation":["Cardiff University","Newcastle University"],"authorGivenName":["F.M.","I.P.","I.","J.P.","S.J."],"authorFamilyName":["Windsor","Vaughan","Durance","Cuff","Ormerod"],"authorFullName":["Windsor, F.M.","Vaughan, I.P.","Durance, I.","Cuff, J.P.","Ormerod, S.J."],"authorOrcid":["https://orcid.org/0000-0001-5030-3470","https://orcid.org/0000-0002-7263-3822","https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0002-0198-4940","https://orcid.org/0000-0002-8174-302X"],"authorRor":["https://ror.org/03kk7td41","https://ror.org/01kj2bm70"],"catalogue":"eidc","description":"The dataset contains stable isotope concentration (d13C and d15N) and community abundance data for a range of aquatic macroinvertebrate taxa measured during a mesocosm drought experiment. The aquatic macroinvertebrates were sampled from four mesocosm system blocks at the Llyn Brianne Experimental Observatory. There were three experimental treatments included within each block (100% [control], 50%, and 10% of the baseflow discharge). Samples were collected before the treatments, and after 30 days of exposure to the treatments. Taxa were identified down to family level for abundance measurements.\n\nThe work was supported by the Natural Environment Research Council (NE/X010597/1), as part of a study to understand ecosystem responses to environmental change through quantifying ecological interactions in freshwater systems.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/X010597/1"],"identifier":"a62a2f1c-2ed4-4ec9-b22c-c3b340a63ca5","incomingCitationCount":0,"givenName":["F.M.","I.P.","I.","J.P.","S.J."],"familyName":["Windsor","Vaughan","Durance","Cuff","Ormerod"],"fullName":["Windsor, F.M.","Vaughan, I.P.","Durance, I.","Cuff, J.P.","Ormerod, S.J."],"keyword":["Biodiversity","ecology","stable isotope","macroinvertebrates","Wales","community abundance","freshwater","mesocosm","aquatic mesocosm"],"keywordsTheme":["Biodiversity"],"keywordsOther":["ecology","stable isotope","macroinvertebrates","Wales","community abundance","freshwater","mesocosm","aquatic mesocosm"],"licence":"Open government licence","lineage":"The mesocosm experiment followed a Before-After Control-Impact (BACI) design (Stewart-Oaten & Bence, 2001), and included a 6-month colonisation period (January to July 2023). Discharge treatments were generated by adjusting intake valves on the individual mesocosms, measuring the depth of the water and using pre-existing stage-discharge curves to calculate reductions in flow. Hess samplers (165cm2, 500um mesh gauge) were used to collect macroinvertebrates at each sampling point.\n\nStable isotope data were generated at UK Centre for Ecology and Hydrology (UKCEH) and reformatted for archiving. Concentrations of d13C and d15N were measured using a Flash EA 1112 Series Elemental Analyzer connected via a Conflo III to a DeltaPlus XP IRMS (Thermo Finnigan, Bremen, Germany).\n\nInternational reference materials USGS40 and USGS41a (both L-glutamic acid) were used as standards for d13C and d15N and duplicated with each batch of samples. Additionally, the USGS40 was used as a reference material for carbon and nitrogen concentrations. \n","locations":["POLYGON((-3.753 52.132, -3.753 52.133, -3.752 52.133, -3.752 52.132, -3.753 52.132))"],"orcid":["https://orcid.org/0000-0001-5030-3470","https://orcid.org/0000-0002-7263-3822","https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0002-0198-4940","https://orcid.org/0000-0002-8174-302X"],"organisation":["Cardiff University","Newcastle University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/a62a2f1c-2ed4-4ec9-b22c-c3b340a63ca5","10.5285/a62a2f1c-2ed4-4ec9-b22c-c3b340a63ca5"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Cardiff University"],"ror":["https://ror.org/03kk7td41","https://ror.org/01kj2bm70","https://ror.org/04xw4m193"],"state":"published","title":"Stable isotope and community abundance data from freshwater macroinvertebrates collected during a mesocosm-based drought experiment","topic":["0/Biodiversity/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"The dataset contains stable isotope concentration (d13C and d15N) and community abundance data for a range of aquatic macroinvertebrate taxa measured during a mesocosm drought experiment. The aquatic macroinvertebrates were sampled from four mesocosm system blocks at..."},{"publicationDate":"2017-04-20T00:00:00.000+00:00","authorAffiliation":["Cardiff University"],"authorGivenName":["I.","H.B.","C."],"authorFamilyName":["Durance","Feeley","Gutierrez-Canovas"],"authorFullName":["Durance, I.","Feeley, H.B.","Gutierrez-Canovas, C."],"authorOrcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0003-0386-0586","https://orcid.org/0000-0002-6785-4049"],"authorRor":["https://ror.org/03kk7td41"],"catalogue":"eidc","description":"These data consist of stream water chemistry for selected Welsh upland rivers. The sampling sites were located in sixty one small and medium catchments. Catchments were chosen from the Welsh Acid Water Surveys (WAWS) program (41 sites) and the Wye catchment (20 sites). Results for pH, alkalinity, conductivity and major cation and anion measurements are presented for the WAWS catchments. Results for pH, alkalinity, conductivity and major anion measurements are presented for the Wye catchment. Samples from the Wye catchment were collected in May 2012. Samples from the WAWS catchments were taken during the summer and autumn of 2012 and spring and summer of 2013.\n\nThe data were collected to characterise water chemistry variation along a gradient of aquatic biodiversity associated with different environmental settings for example land-use intensify and recovery from acidification. Dr Isabelle Durance was responsible for organising the surveys, Dr Hugh Feeley was in charge of collecting and preserving the water samples. Analysis of the water samples was carried out at the Forest Research Laboratories. The work was carried out under Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) project (Grant reference NERC NE/J014818/1). DURESS was a project funded by the Natural Environment Research Council (NERC) Biodiversity and Ecosystem Service Sustainability (BESS) programme.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J014818/1"],"identifier":"d329ca18-c3d8-49f0-b2fd-5243d76dc650","incomingCitationCount":0,"givenName":["Isabelle","I.","H.B.","C."],"familyName":["Durance","Feeley","Gutierrez-Canovas"],"fullName":["Durance, I.","Feeley, H.B.","Gutierrez-Canovas, C."],"keyword":["Wales","DURESS","aquatic organism","invertebrate","land use","acidity","benthic ecosystem"],"keywordsPlace":["Wales"],"keywordsProject":["DURESS"],"keywordsOther":["aquatic organism","invertebrate","land use","acidity","benthic ecosystem"],"licence":"Open government licence","lineage":"Filtered and unfiltered water samples were collected in situ using standardised procedures. Samples were then sent to the Forest Research Laboratory to be analysed for pH, alkalinity, conductivity, major anions and cations. Results were entered into an Excel spreadsheet. Data were exported as comma separated files for ingestion into the Environmental Information Data Centre (EIDC)\n","locations":["POLYGON((-5.473 51.375, -5.473 53.434, -2.654 53.434, -2.654 51.375, -5.473 51.375))"],"orcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0003-0386-0586","https://orcid.org/0000-0002-6785-4049"],"organisation":["Cardiff University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/d329ca18-c3d8-49f0-b2fd-5243d76dc650","10.5285/d329ca18-c3d8-49f0-b2fd-5243d76dc650"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Cardiff University"],"ror":["https://ror.org/03kk7td41","https://ror.org/04xw4m193"],"state":"published","title":"Water chemistry of Welsh upland rivers (2012-2013)","version":1.0,"view":["public","danor"],"shortenedDescription":"These data consist of stream water chemistry for selected Welsh upland rivers. The sampling sites were located in sixty one small and medium catchments. Catchments were chosen from the Welsh Acid Water Surveys (WAWS) program (41 sites) and the Wye catchment (20 sites)...."},{"publicationDate":"2017-03-29T00:00:00.000+00:00","authorAffiliation":["Cardiff University","Imperial College London"],"authorGivenName":["I.","C.","D.M.","G."],"authorFamilyName":["Durance","Gutierrez-Canovas","Perkins","Woodward"],"authorFullName":["Durance, I.","Gutierrez-Canovas, C.","Perkins, D.M.","Woodward, G."],"authorOrcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0002-6785-4049"],"authorRor":["https://ror.org/03kk7td41","https://ror.org/041kmwe10"],"catalogue":"eidc","description":"These data are cellulolytic decomposition in eight Welsh upland rivers with contrasting land-use, moorland and exotic conifer, in response to riparian deciduous leaf addition. Eight sampling reaches were chosen at two sites, Llyn Brianne (4 reaches) and Plynlimon (4 reaches). The experiment consisted of adding deciduous leaves to half of the reaches whilst the other half were maintained as a control (no addition of deciduous leaves). To characterise the cellulolytic decomposition of the studied streams, cotton strips were placed and then collected during January 2013 (before deciduous leaf addition) and March 2013 (after deciduous leaf addition) in each sampling reach. \n\nThe main goal of this survey was to examine how aquatic biodiversity and litter decomposition respond to leaf addition in moorland and conifer forested rivers. Dr Isabelle Durance was responsible for organising the surveys, Dr Dan Perkins was in charge of collecting, processing and sorting the samples. The work was carried out under Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) project (Grant reference NERC NE/J014818/1). DURESS was a project funded by the Natural Environment Research Council (NERC) Biodiversity and Ecosystem Service Sustainability (BESS) programme. \n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J014818/1"],"identifier":"53b4ec90-cb8a-49c6-a6f9-18a77f980b0f","incomingCitationCount":0,"givenName":["Isabelle","I.","C.","D.M.","G."],"familyName":["Durance","Gutierrez-Canovas","Perkins","Woodward"],"fullName":["Durance, I.","Gutierrez-Canovas, C.","Perkins, D.M.","Woodward, G."],"keyword":["Wales","Plynlimon","Llyn Brianne","decomposition","cellulolytic decomposition","land use","ecosystem services"],"keywordsPlace":["Wales","Plynlimon","Llyn Brianne"],"keywordsOther":["decomposition","cellulolytic decomposition","land use","ecosystem services"],"licence":"Open government licence","lineage":"Each stream was divided into an upstream control zone and a downstream experimental zone. Samples of algal biofilm were collected from tiles previously placed on each sampling site. Deciduous leaves were added directly to the stream and by fixing 'Onion bags' of leaves the stream bed and bank. Samples were collected two occasions, January (3-16/01/2013), and March (11-14/03/2013) in all the streams in both the upstream reference zones and downstream experimental zones. Six experimental units (cotton strips) were placed randomly in each reach of the experimental sites before and after the manipulation. At the end of the 'before' (T1) and after (T2) experimental periods, strips were recovered from the streams and frozen immediately at ~20 degrees Celsius. Back at the laboratory calico strips were rinsed thoroughly in tap water and oven dried to constant mass at 65 degrees Celsius and the tensile strength was measured using a Hounsfield machine (Maywood Instruments Ltd., Basingstoke, UK) with a 25 kN load cell and 40 mm test gap (after Jenkins et al. 2013). One estimate of breaking strain was obtained per strip. Three untreated strips (which were also rinsed thoroughly in tap water after being taken to the field and returned, then oven dried to constant mass before tensile strength testing) were used as controls for any loss of strength from transport and washing in tap water.","locations":["POLYGON((-3.785 52.107, -3.785 52.518, -3.641 52.518, -3.641 52.107, -3.785 52.107))"],"orcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0002-6785-4049"],"organisation":["Cardiff University","Imperial College London","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/53b4ec90-cb8a-49c6-a6f9-18a77f980b0f","10.5285/53b4ec90-cb8a-49c6-a6f9-18a77f980b0f"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Cardiff University"],"ror":["https://ror.org/03kk7td41","https://ror.org/041kmwe10","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Hladyz, S., Åbjörnsson, K., Giller, P. S., & Woodward, G. (2011). Impacts of an aggressive riparian invader on community structure and ecosystem functioning in stream food webs. Journal of Applied Ecology, 48(2), 443-452","Jenkins, G.B., Woodward, G. and Hildrew, A.G., 2013. Long-term amelioration of acidity accelerates decomposition in headwater streams. Global change biology, 19(4), pp.1100-1106.","Layer, K., Riede, J.O., Hildrew, A.G. and Woodward, G., 2010. Food web structure and stability in 20 streams across a wide pH gradient. Advances In Ecological Research, 42, pp.265-299."],"title":"Cellulolytic decomposition in Welsh upland rivers in response to organic matter addition (2013)","version":1.0,"view":["public","danor"],"shortenedDescription":"These data are cellulolytic decomposition in eight Welsh upland rivers with contrasting land-use, moorland and exotic conifer, in response to riparian deciduous leaf addition. Eight sampling reaches were chosen at two sites, Llyn Brianne (4 reaches) and Plynlimon (4..."},{"publicationDate":"2024-02-08T00:00:00.000+00:00","authorAffiliation":["University of Exeter","Cardiff University","Forestry Research Institute of Ghana"],"authorGivenName":["S.","D.","M.","T."],"authorFamilyName":["Stivanello","Clark","Adu-Bredu","Haddad","Hill"],"authorFullName":["Stivanello, S.","Clark, D.","Adu-Bredu, S.","Haddad, M.","Hill, T."],"authorOrcid":["https://orcid.org/0000-0002-1090-2361","https://orcid.org/0000-0001-7487-7911","https://orcid.org/0000-0003-4153-6146","https://orcid.org/0000-0002-1740-930X"],"authorRor":["https://ror.org/03yghzc09","https://ror.org/03kk7td41","https://ror.org/027786x52"],"catalogue":"eidc","description":"Measurements of tree resistance to ground and adjacent soils in the Ankasa Conservation Area located in southwestern Ghana. Tree species were selected as representative of the dominant species with diameter at breast height (DBH) ranging from 17.8 to 77.8 cm. The selected 20 trees had DBH ranging from 17.8 to 77.8 cm. In addition, measurements were extended to a single liana (Connarus africanus) with 7.0 cm DBH. Data on tree and soil resistivity were collected on the same 20 trees for both wet (March) and dry (September) season campaigns in 2019. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/P001564/1"],"identifier":"c46028c6-1d2b-4b40-a174-39ea3fee2499","incomingCitationCount":0,"givenName":["S.","D.","M.","T.","Timothy"],"familyName":["Stivanello","Clark","Adu-Bredu","Haddad","Hill"],"fullName":["Stivanello, S.","Clark, D.","Adu-Bredu, S.","Haddad, M.","Hill, T."],"keyword":["Ghana","tropical forest","tree","resistance (biological)","Ground","Fall of potential ","Connarus africanus"],"keywordsPlace":["Ghana"],"keywordsOther":["tropical forest","tree","resistance (biological)","Ground","Fall of potential ","Connarus africanus"],"licence":"Open government licence","lineage":"Tree resistance to ground was measured using a Digital Earth Tester DET2/2 (Megger, AVO Ltd., Dover, England) and adapting the “Fall of Potential” method to trees. Measurements were conducted at 1.40 m and 0.70 m heights above ground level. The differences between these measurements heights were used to calculate the electrical properties of each tree stem. Soil resistance was measured using a Digital Earth Tester DET2/2 (Megger, AVO Ltd., Dover, England) using a Wenner array configuration of spikes with “line traverse method”. Surface soil moisture was measured using a SM150T sensor (Delta-T Devices Ltd, Cambridge, UK) for both dry and wet seasons at 5 cm depth.","locations":["POLYGON((-2.731 5.136, -2.731 5.443, -2.424 5.443, -2.424 5.136, -2.731 5.136))"],"orcid":["https://orcid.org/0000-0002-1090-2361","https://orcid.org/0000-0001-7487-7911","https://orcid.org/0000-0003-4153-6146","https://orcid.org/0000-0002-1740-930X"],"organisation":["University of Exeter","Cardiff University","Forestry Research Institute of Ghana","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c46028c6-1d2b-4b40-a174-39ea3fee2499","10.5285/c46028c6-1d2b-4b40-a174-39ea3fee2499"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Cardiff University","University of Exeter"],"ror":["https://ror.org/03yghzc09","https://ror.org/03kk7td41","https://ror.org/027786x52","https://ror.org/04xw4m193"],"state":"published","title":"Electrical resistance of trees and soil in Ankasa forest, Ghana, 2019","version":1.0,"view":["public","clwe"],"shortenedDescription":"Measurements of tree resistance to ground and adjacent soils in the Ankasa Conservation Area located in southwestern Ghana. Tree species were selected as representative of the dominant species with diameter at breast height (DBH) ranging from 17.8 to 77.8 cm. The selected..."},{"publicationDate":"2021-07-13T00:00:00.000+00:00","authorAffiliation":["Cardiff University"],"authorGivenName":["E.","M.O."],"authorFamilyName":["Zarate","Cuthbert"],"authorFullName":["Zarate, E.","Cuthbert, M.O."],"authorOrcid":["https://orcid.org/0000-0001-6721-022X"],"catalogue":"eidc","description":"This datasets contains Electrical Resistivity Tomography surveys taken in the Makutapora Basin, Central Tanzania, using an AGI SuperSting R8 (STING) resistivity meter. Survey geometry, parameters and coordinates are also included.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/P017819/1","NE/L002434/1"],"identifier":"1998da32-a978-41a4-8a66-81df1e625cca","incomingCitationCount":1,"givenName":["E.","M.O.","Mark"],"familyName":["Zarate","Cuthbert"],"fullName":["Zarate, E.","Cuthbert, M.O.","Cuthbert, M."],"keyword":["Tanzania","Electrical Resistivity Tomography","hydrogeology","geology","geophysics"],"keywordsPlace":["Tanzania"],"keywordsOther":["Electrical Resistivity Tomography","hydrogeology","geology","geophysics"],"licence":"Open government licence","lineage":"The data were generated using .stg outputs from the STING meter and converted to .dat files using a bespoke Python code while also removing anomalous values.","locations":["POLYGON((35.717 -5.97, 35.717 -5.95, 35.746 -5.95, 35.746 -5.97, 35.717 -5.97))"],"orcid":["https://orcid.org/0000-0001-6721-022X"],"organisation":["Cardiff University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1998da32-a978-41a4-8a66-81df1e625cca","10.5285/1998da32-a978-41a4-8a66-81df1e625cca"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Cardiff University"],"ror":["https://ror.org/04xw4m193","https://ror.org/03kk7td41"],"state":"published","title":"Electrical resistivity tomography surveys from the Makutapora Basin, Tanzania, June-July 2019","version":1.0,"view":["public","clwe"],"shortenedDescription":"This datasets contains Electrical Resistivity Tomography surveys taken in the Makutapora Basin, Central Tanzania, using an AGI SuperSting R8 (STING) resistivity meter. Survey geometry, parameters and coordinates are also included."},{"publicationDate":"2017-04-20T00:00:00.000+00:00","authorAffiliation":["Cardiff University"],"authorGivenName":["I.","C.","M.C.","S.J."],"authorFamilyName":["Durance","Gutierrez-Canovas","Pye","Ormerod"],"authorFullName":["Durance, I.","Gutierrez-Canovas, C.","Pye, M.C.","Ormerod, S.J."],"authorOrcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0002-6785-4049","https://orcid.org/0000-0002-8174-302X"],"authorRor":["https://ror.org/03kk7td41"],"catalogue":"eidc","description":"These data are suspended organic matter stocks of coarse and fine particulate organic matter in eight Welsh upland rivers with contrasting land-use, moorland and exotic conifer, in response to riparian deciduous leaf addition. Eight sampling reaches were chosen at two sites, Llyn Brianne (4 reaches) and Plynlimon (4 reaches). The experiment consisted of adding deciduous leaves to half of the reaches whilst the other half were maintained as a control (no addition of deciduous leaves). To characterise the suspended organic matter of the studied streams, water was filtered to collect monthly samples from December 2012 to January 2013 (before deciduous leaf addition) and from February to April 2013 (after deciduous leaf addition) in each sampling reach. \n\nThe main goal of this survey was to examine how aquatic biodiversity and organic matter stocks respond to leaf addition in moorland and conifer forested rivers. Dr Isabelle Durance was responsible for organising the surveys, Marian Pye was in charge of collecting, processing and sorting the samples. The work was carried out under Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) project (Grant reference NERC NE/J014818/1). DURESS was a project funded by the Natural Environment Research Council (NERC) Biodiversity and Ecosystem Service Sustainability (BESS) programme. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J014818/1"],"identifier":"37e7a1b3-0564-4c6f-84df-a9635edb57b4","incomingCitationCount":0,"givenName":["I.","C.","M.C.","S.J.","Isabelle"],"familyName":["Durance","Gutierrez-Canovas","Pye","Ormerod"],"fullName":["Durance, I.","Gutierrez-Canovas, C.","Pye, M.C.","Ormerod, S.J."],"keyword":["Wales","Plynlimon","Llyn Brianne","diversity","suspended organic matter","land use","decomposition","ecosystem services"],"keywordsPlace":["Wales","Plynlimon","Llyn Brianne"],"keywordsOther":["diversity","suspended organic matter","land use","decomposition","ecosystem services"],"licence":"Open government licence","lineage":"Each stream was divided into an upstream control zone and a downstream experimental zone. Samples of suspended organic matter were collected by filtering water. Deciduous leaves were added directly to the stream and by fixing 'Onion bags' of leaves the stream bed and bank. Samples were collected on six occasions, December (3-10/12/2012) January (3-16/01/2013), February (4-7/02/2013), March (11-14/03/2013), April (3-8/04/2013) and May (22-26/05/2013) in all the streams in both the upstream reference zones and downstream experimental zones. Upon collection,Suspended Organic Matter (SOM) samples were refrigerated at 4 degrees celsius, returned to the laboratory and frozen within 24 hours. Frozen SOM samples were then freeze-dried at -20 degrees Celsius for 48 to 72 hours and weighed to the nearest 0.0001gramme. Freeze-dried SOM samples were ground, homogenised and subsampled (3mg ±0.3mg) for analysis of elemental (C, N) and stable isotopic (delta-13C, delta-15N) composition on a mass spectrometer (University of California Davis Stable Isotope Facility). All SOM samples were corrected for inorganic content by combusting a subset (%) of samples from each site at 550 degrees Celsius for 5 hours and applying an ash-free conversion factor. Results were recorded in an Excel spreadsheet. Data was exported to a comma separated value files for ingestion into the Environmental Information Data Centre (EIDC).","locations":["POLYGON((-3.785 52.107, -3.785 52.518, -3.641 52.518, -3.641 52.107, -3.785 52.107))"],"orcid":["https://orcid.org/0000-0002-4138-3349","https://orcid.org/0000-0002-6785-4049","https://orcid.org/0000-0002-8174-302X"],"organisation":["Cardiff University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/37e7a1b3-0564-4c6f-84df-a9635edb57b4","10.5285/37e7a1b3-0564-4c6f-84df-a9635edb57b4"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Cardiff University"],"ror":["https://ror.org/03kk7td41","https://ror.org/04xw4m193"],"state":"published","title":"Suspended organic matter stocks of Welsh upland rivers in response to organic matter addition (2012-2013)","version":1.0,"view":["public","danor"],"shortenedDescription":"These data are suspended organic matter stocks of coarse and fine particulate organic matter in eight Welsh upland rivers with contrasting land-use, moorland and exotic conifer, in response to riparian deciduous leaf addition. Eight sampling reaches were chosen at two..."},{"publicationDate":"2017-07-19T00:00:00.000+00:00","authorAffiliation":["Cardiff University"],"authorGivenName":["I.M.","H.B.","M.C.","N.","K.","L","D.","M.","S.","C.","A.","I.","A.J."],"authorFamilyName":["Russo","Feeley","Pye","Razi","Sworn","Chrimes","Edwards","Nicholls","Johnston ","James","Williams","Durance","Weightman"],"authorFullName":["Russo, I.M.","Feeley, H.B.","Pye, M.C.","Razi, N.","Sworn, K.","Chrimes, L.","Edwards, D.","Nicholls, M.","Johnston , S.","James, C.","Williams, A.","Durance, I.","Weightman, A.J."],"authorOrcid":["https://orcid.org/0000-0001-9504-3633","https://orcid.org/0000-0003-0386-0586","https://orcid.org/0000-0002-3806-3416","https://orcid.org/0000-0002-4138-3349"],"authorRor":["https://ror.org/03kk7td41"],"catalogue":"eidc","description":"These data consist of raw 16S rRNA gene sequences for the bacterial communities in three upland Welsh river sites under different treatments. A mapping file with metadata for each sample is provided and a operational taxonomic unit (OTU) table. These sites were situated in three streams from the Llyn Brianne Stream Observatory, Powys, Wales, UK (52°08' N, 3°45' W). The catchments cover approximately 300 square kilometres of upland Wales in the upper Afon Tywi. These first to third order experimental streams rise in either rough, sheep-grazed moorland (named as L6 and L7) or plantations of Sitka spruce Picea sitchensis with lodgepole pine Pinus contorta (named as L3). Some reductions of forest cover have occurred in L3 with normal logging operations. A 24-hour experiment was conducted at the Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) cascading flumes at these streams during September 2014. Each flume consisted of 3 channels, each assigned a different treatment: control, sugar addition and peat addition. Sugar (sucrose) and peat were added to channels to represent a simple and complex form of dissolved organic carbon (DOC) respectively. Five biofilm samples were collected from random locations in each experimental channel. Samples were taken at 0.5, 3, 15 and 24 hours after the start of the experiment. Epilithon were taken from unglazed ceramic tiles that had been colonised by epilithon in the river. After amplification, the 16S rRNA fragments were sequenced on the Illumina MiSeq next generation sequencing platform.\n\nThe main goal of this survey was to characterise bacterial diversity, the chemical and biological consequences of elevated DOC inputs, and to investigate the role of bacterial organisms in controlling organic carbon flux. Prof Andy Weightman and Dr Isabelle Durance were responsible for organising the experiments. Sampling was carried out by Dr. Isa-Rita Russo and a team of Post Doctoral Research Assistants (PDRA's)/students. The work was carried out under the Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) project (Grant reference NERC NE/J014818/1). DURESS was a project funded by the Natural Environment Research Council (NERC) Biodiversity and Ecosystem Service Sustainability (BESS) programme.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J014818/1"],"identifier":"df829b9f-c4c5-4e53-9217-c9c1e5bd078d","incomingCitationCount":0,"givenName":["Isa-Rita M ","I.M.","H.B.","M.C.","N.","K.","L","D.","M.","S.","C.","A.","I.","A.J."],"familyName":["Russo","Feeley","Pye","Razi","Sworn","Chrimes","Edwards","Nicholls","Johnston ","James","Williams","Durance","Weightman"],"fullName":["Russo, I.M.","Feeley, H.B.","Pye, M.C.","Razi, N.","Sworn, K.","Chrimes, L.","Edwards, D.","Nicholls, M.","Johnston , S.","James, C.","Williams, A.","Durance, I.","Weightman, A.J."],"keyword":["Flumes","Wales","Llyn Brianne","Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS)","Sugar","Control","freshwater bacterial biofilm communities","lake","peat","ecosystem resilience","dissolved organic carbon","biological diversity"],"keywordsInstrument":["Flumes"],"keywordsPlace":["Wales","Llyn Brianne"],"keywordsProject":["Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS)"],"keywordsOther":["Sugar","Control","freshwater bacterial biofilm communities","lake","peat","ecosystem resilience","dissolved organic carbon","biological diversity"],"licence":"Open government licence","lineage":"Dissolved organic carbon (DOC) additions were made to replicate recirculating flumes at three upland streams in mid-Wales. Water and biofilm samples were taken at regular intervals over the following 24-hour period to monitor the effects of carbon addition. Temperature and water oxygen content were also monitored over the course of the experiment. The water samples were analysed for total carbon, inorganic carbon and organic carbon content. Epilithon were taken from unglazed ceramic tiles that had been colonised by epilithon in the river using the tooth-brush method. Samples were frozen immediately after collection. On return to the laboratory, samples were stored at -70 degrees Celsius prior to DNA extractions. Total genomic DNA was extracted from epilithon using the FastDNA (registered trademark) SPIN Kit for soil, incorporating a bead beating step. An extraction kit negative control was included in the sequencing run.\n\nTo test for the presence of DNA, amplifications were carried out in a total volume of 50 microlitre containing 10 microlitre of Polymerase chain reaction P(CR) Mix (Buffer), 0.2 micromolar of each of the forward and reverse primers, 1.5 Uracil (U) of Taq DNA polymerase and 1 microlitre of DNA (approximately 50 nanogram/microliter). Primers 357F (Turner et al. 1999) and 518R (Muyzer et al. 1993) were used for amplification. In addition (these amplifications were carried out by a commercial company - GeneTiCA), the bacterial 16S region was amplified with primers S-D-Bact-0341-b-S-17: CCTACGGGNGGCWGCAG, S-D-Bact-0785-a-A-21: GACTACHVGGGTATCTAATCC (Klindworth et al. 2013). Triplicate Polymerase chain reactions (PCRs) for each sample were cleaned with the AMPure bead method, pooled and sequenced on an Illumina MiSeq v3 (2 x 300 base pairs) (Illumina, Inc., San Diego, USA) with Nextera XT assay chemistry. Polymerase chain reaction (PCR) and sequencing were done by GeneTiCA (Prague, Czech Republic). Samples were double-barcoded to allow 192 samples to be run together; the sequencing run was shared with samples from another experiment.\n\nSequences were quality filtered and grouped into operational taxonomic units (OTUs) using USEARCH and QIIME. Taxonomy was assigned from the Greengenes database. Each row in the OTU table corresponds to an OTU. Column 1 contains the OTU identifiers, columns 2-98 are headed as per the sample IDs in the mapping file; columns 99-105 contain the taxonomic information.","locations":["POLYGON((-3.779 52.115, -3.779 52.161, -3.714 52.161, -3.714 52.115, -3.779 52.115))"],"orcid":["https://orcid.org/0000-0001-9504-3633","https://orcid.org/0000-0003-0386-0586","https://orcid.org/0000-0002-3806-3416","https://orcid.org/0000-0002-4138-3349"],"organisation":["Cardiff University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/df829b9f-c4c5-4e53-9217-c9c1e5bd078d","10.5285/df829b9f-c4c5-4e53-9217-c9c1e5bd078d"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["Cardiff University"],"ror":["https://ror.org/03kk7td41","https://ror.org/04xw4m193"],"state":"published","title":"Molecular analysis of freshwater bacterial biofilm communities under experimentally manipulated dissolved organic carbon regimes at Llyn Brianne (2014)","version":1.0,"view":["public","phtr"],"shortenedDescription":"These data consist of raw 16S rRNA gene sequences for the bacterial communities in three upland Welsh river sites under different treatments. A mapping file with metadata for each sample is provided and a operational taxonomic unit (OTU) table. These sites were situated..."}],"facets":[{"fieldName":"topic","displayName":"Topic","hierarchical":true,"admin":false,"results":[{"name":"Agriculture","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CCardiff+University&facet=resourceStatus%7CAvailable&facet=topic%7C0%2FAgriculture%2F","active":false,"count":68},{"name":"Animal behaviour","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CCardiff+University&facet=resourceStatus%7CAvailable&facet=topic%7C0%2FAnimal+behaviour%2F","active":false,"count":78},{"name":"Biodiversity","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CCardiff+University&facet=resourceStatus%7CAvailable&facet=topic%7C0%2FBiodiversity%2F","active":false,"count":270},{"name":"Climate and climate 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