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The location for each specimen was geotagged using Google Maps’ Geocoding application programming interface. Each specimen had its left and right forewing landmarked, with the wing shapes aligned using a Procrustes alignment, and Procrustes distance between the wings calculated. \n\nThe data came from a digitisation program as part of a NERC funded Standard Grant awarded to R. Gill (NE/P012574/1) and I. 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As part of a longer-term capture-mark-recapture study, three species of rodents were trapped with Sherman live-traps fortnightly for 12 months: wood mouse (Apodemus sylvaticus), yellow-necked mouse (Apodemus flavicollis) and bank vole (Myodes glaerolus). Upon capture, they were measured, weighted, sexed, aged and a tissue sample and a faecal sample were collected from all mouse individuals for genetic and microbiome analyses. All rodents were released to their location of capture. First time each individual was captured, they were injected with a permanent subcutaneous identification  Radio-Frequency Identification(RFID)-tag (Passive Integrated Transponde-tag). The tagged rodents were subsequently tracked with a set of custom-made tracking devices (loggers). Loggers produced dense time-stamped occurrence data suitable for inferring spatio-temporal activity patterns of rodents, such as temporal niches, home ranges and social networks. Tissue samples were used to genotype the wood mouse population and bacterial DNA extracted from faecal samples were used to profile their gut microbiome composition.\n\nThis work was funded by a NERC independent Research Fellowship to Sarah Knowles (NE/L011867/1)","documentType":"GEMINI_DOCUMENT","familyName":["Raulo","Allen","Troitsky","Husby","Firth","Coulson","Knowles"],"fullName":["Raulo, A.","Allen, B.E.","Troitsky, T.","Husby, A.","Firth, J.","Coulson, T.","Knowles, S.C.L."],"funder":["Natural Environment Research Council"],"givenName":["A.","B.E.","T.","J.","S.C.L."],"grant":["NE/L011867/1"],"identifier":"c67fde7f-a1c8-4cb4-a76e-0c6d21c82222","incomingCitationCount":1,"keyword":["Microbiome","microbiota","gut microbiome","trapping","Sherman","mouse","wood mouse","bank vole","yellow-necked mouse","Apodemus","Myodes","RFID-tracking","social network analysis","home range analysis","microsatellites","kinship","pedigree","animal genetics","rodent"],"keywordsOther":["Microbiome","microbiota","gut microbiome","trapping","Sherman","mouse","wood mouse","bank vole","yellow-necked mouse","Apodemus","Myodes","RFID-tracking","social network analysis","home range analysis","microsatellites","kinship","pedigree","animal genetics","rodent"],"licence":"Open government licence","lineage":"Wild rodents were trapped fortnightly, tagged and continuously monitored with tracking technology for one year.  This is a natural rodent population and no experimental manipulations were made. Upon capture, faecal samples were collected from the rodents and a piece of ear tissue was collected upon first capture of each individual. Tissue samples were stored in ethanol in -20 C and faecal samples were stored without buffer in -80 C for 3 years. In 2017 DNA was extracted from the faecal samples of wood mice and their gut microbiome was characterised from this by amplification and sequencing of the V3 region of bacterial 16S rRNA marker gene. In 2018 the wood mouse population was genotyped and their pedigree reconstructed from ear tissue samples using 11 microsatellite markers. Details of the data and the cleaning process can be found from the supporting documentation.","locations":["POLYGON((-0.66 51.398, -0.66 51.422, -0.633 51.422, -0.633 51.398, -0.66 51.398))"],"metadataDate":"2026-06-29T16:52:13.000Z","orcid":["https://orcid.org/0000-0003-4860-7840","https://orcid.org/0000-0002-3811-8173","https://orcid.org/0000-0001-8394-6229","https://orcid.org/0000-0003-1911-8351","https://orcid.org/0000-0001-7183-4115","https://orcid.org/0000-0001-9371-9003","https://orcid.org/0000-0002-2368-4623"],"organisation":["University of Oxford","University of Liverpool","University of Helsinki","Uppsala University","NERC EDS Environmental Information Data Centre","Imperial College London"],"publicationDate":"2022-11-25T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222","10.5285/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222","doi:10.5285/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222"],"resourceType":"Dataset","rightsHolder":["Imperial College London"],"ror":["https://ror.org/052gg0110","https://ror.org/04xs57h96","https://ror.org/040af2s02","https://ror.org/048a87296","https://ror.org/04xw4m193","https://ror.org/041kmwe10"],"shortenedDescription":"This data set is a combination of trapping data, tracking data and data on the genetic relatedness and gut microbiome composition of wild rodents caught in 2.3 ha study site in Nash’s Copse, Silwood Park, from November 2014 to November 2015. As part of a longer-term…","state":"published","title":"Wild rodent trapping, tracking and sampling for genetics and gut microbiome, Silwood Park, Berkshire, November 2014 to November 2015","version":1.0,"view":["public","margla"]},{"authorAffiliation":["Brazilian Agriculture Research Corporation - Embrapa","Imperial College London","Universidade Federal de Pernambuco"],"authorFamilyName":["Moura","Lloyd","Carvalho","Miranda"],"authorFullName":["Moura, M.S.B.","Lloyd, J.","Carvalho, H.F.S.","Miranda, R.Q."],"authorGivenName":["M.S.B.","J.","H.F.S.","R.Q."],"authorOrcid":["https://orcid.org/0000-0002-2844-1399","https://orcid.org/0000-0002-9052-7898","https://orcid.org/0000-0002-5464-2397"],"authorRor":["https://ror.org/0482b5b22","https://ror.org/041kmwe10","https://ror.org/047908t24"],"availability":"Available","catalogue":"eidc","dataFormat":["xyz","Polygon file format (.ply)"],"description":"This dataset contains 3D Lidar scans representative for 0.5 ha permanent sample plots at Caatinga, Brazil. Two plots were located in Serra das Almas Reserve (SDA) and one plot in Petrolina (PET). The dataset also includes scans completed inside and outside for 10 individual trees. Scans were taken between July 2017 and May 2019. ","documentType":"GEMINI_DOCUMENT","familyName":["Moura","Lloyd","Carvalho","Miranda"],"fullName":["Moura, M.S.B.","Lloyd, J.","Carvalho, H.F.S.","Miranda, R.Q."],"funder":["Natural Environment Research Council"],"givenName":["M.S.B.","J.","H.F.S.","R.Q.","Magna Soelma Beserra"],"grant":["NE/N012526/1"],"identifier":"6a29d55e-b40e-4f8c-8dd2-5cf0e27634ac","incomingCitationCount":0,"keyword":["Caatinga","Lidar","Point Cloud","canopy and tree architecture"],"keywordsOther":["Caatinga","Lidar","Point Cloud","canopy and tree architecture"],"licence":"Open government licence","lineage":"3D scans were taken using a TLS 3D Faro Focus scanner and Faro Scene software was used to register the raw scans and export the point cloud in xyz format.","locations":["POLYGON((-41.77 -9.319, -41.77 -4.511, -39.232 -4.511, -39.232 -9.319, -41.77 -9.319))"],"metadataDate":"2026-06-29T18:20:00.000Z","orcid":["https://orcid.org/0000-0002-2844-1399","https://orcid.org/0000-0002-9052-7898","https://orcid.org/0000-0002-5464-2397"],"organisation":["Brazilian Agriculture Research Corporation - Embrapa","Imperial College London","Universidade Federal de Pernambuco","NERC EDS Environmental Information Data Centre"],"publicationDate":"2021-11-04T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/6a29d55e-b40e-4f8c-8dd2-5cf0e27634ac","10.5285/6a29d55e-b40e-4f8c-8dd2-5cf0e27634ac","doi:10.5285/6a29d55e-b40e-4f8c-8dd2-5cf0e27634ac"],"resourceType":"Dataset","rightsHolder":["Imperial College London"],"ror":["https://ror.org/0482b5b22","https://ror.org/041kmwe10","https://ror.org/047908t24","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains 3D Lidar scans representative for 0.5 ha permanent sample plots at Caatinga, Brazil. Two plots were located in Serra das Almas Reserve (SDA) and one plot in Petrolina (PET). The dataset also includes scans completed inside and outside for 10 individual…","state":"published","title":"Registered point cloud and raw scan terrestrial lidar data for canopy structure studies at tree and plot levels of Caatinga vegetation, Brazil, 2017-2019","version":1.0,"view":["public","clwe"]},{"authorAffiliation":["Brazilian Agriculture Research Corporation - Embrapa","Wageningen University","Imperial College London","Universidade de São Paulo","Universidade Federal de Pernambuco","James Cook University"],"authorFamilyName":["Moura","Veenendaal","Lloyd","Brunello","Miranda","Ishida"],"authorFullName":["Moura, M.S.B.","Veenendaal, E.M.","Lloyd, J.","Brunello, A.T.","Miranda, R.Q.","Ishida, F.Y."],"authorGivenName":["M.S.B.","E.M.","J.","A.T.","R.Q.","F.Y."],"authorOrcid":["https://orcid.org/0000-0002-2844-1399","https://orcid.org/0000-0001-8230-2501","https://orcid.org/0000-0001-7654-5873","https://orcid.org/0000-0002-5464-2397","https://orcid.org/0000-0002-3251-8192"],"authorRor":["https://ror.org/0482b5b22","https://ror.org/041kmwe10","https://ror.org/036rp1748","https://ror.org/047908t24","https://ror.org/04gsp2c11"],"availability":"Available","catalogue":"eidc","dataFormat":["jpg"],"description":"The dataset contains raw hemispherical photographs of canopy structure representative for 0.5 ha permanent plots (26) across Caatinga area in Brazil. The photographs were taken between March 2017 and August 2019, using a digital camera (NIKON D100) with a Sigma 4.5 mm F2.8 fisheye lens. \n\nWhen processed the photos provide a representative value of LAI (Leaf area index) for the plot.","documentType":"GEMINI_DOCUMENT","familyName":["Moura","Veenendaal","Lloyd","Brunello","Miranda","Ishida"],"fullName":["Moura, M.S.B.","Veenendaal, E.M.","Lloyd, J.","Brunello, A.T.","Miranda, R.Q.","Ishida, F.Y."],"funder":["Natural Environment Research Council"],"givenName":["M.S.B.","E.M.","J.","A.T.","R.Q.","F.Y.","Magna Soelma Beserra "],"grant":["NE/N012526/1"],"identifier":"a1c0f869-6e03-4902-af94-31e90ba141a0","incomingCitationCount":0,"keyword":["Caatinga","leaf area index","canopy and tree architecture"],"keywordsOther":["Caatinga","leaf area index","canopy and tree architecture"],"licence":"Open government licence","lineage":"The photos were taken using a digital camera (NIKON D100) with a Sigma 4.5 mm F2.8 fisheye lens. Under overcast sky conditions one picture was taken on each intersection of four subplots resulting in a total of 36 photos in each plot for 12 plots. For other sites, one photo was taken at the centre of the subplot. Pictures were taken with the top of the camera facing North at a height of approximately 1 m. The quantity of photos for each plot may vary because in some occasions there was a problem with the trigger bottom of the camera, or rapid changes in sky conditions precluded taking a picture at that location or necessitated rejection of the image afterwards.  When processed the photos provide a representative value of LAI for the whole plot, not for individual subplots as the image, depending on vegetation height, may include tree canopies up to 20 m distance from the camera.","locations":["POLYGON((-44 -12, -44 -3, -35 -3, -35 -12, -44 -12))"],"metadataDate":"2026-06-29T17:20:57.000Z","orcid":["https://orcid.org/0000-0002-2844-1399","https://orcid.org/0000-0001-8230-2501","https://orcid.org/0000-0001-7654-5873","https://orcid.org/0000-0002-5464-2397","https://orcid.org/0000-0002-3251-8192"],"organisation":["Brazilian Agriculture Research Corporation - Embrapa","Wageningen University","Imperial College London","Universidade de São Paulo","Universidade Federal de Pernambuco","James Cook University","NERC EDS Environmental Information Data Centre"],"publicationDate":"2021-07-22T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/a1c0f869-6e03-4902-af94-31e90ba141a0","10.5285/a1c0f869-6e03-4902-af94-31e90ba141a0","doi:10.5285/a1c0f869-6e03-4902-af94-31e90ba141a0"],"resourceType":"Dataset","rightsHolder":["Imperial College London"],"ror":["https://ror.org/0482b5b22","https://ror.org/041kmwe10","https://ror.org/036rp1748","https://ror.org/047908t24","https://ror.org/04gsp2c11","https://ror.org/04xw4m193"],"shortenedDescription":"The dataset contains raw hemispherical photographs of canopy structure representative for 0.5 ha permanent plots (26) across Caatinga area in Brazil. The photographs were taken between March 2017 and August 2019, using a digital camera (NIKON D100) with a Sigma 4.5…","state":"published","title":"Hemispherical photographs for estimation of leaf area index of Caatinga vegetation in Brazil, 2017-2019","version":1.0,"view":["public","clwe"]},{"authorAffiliation":["Imperial College London","Universiti Putra Malaysia","International Islamic University Malaysia","Universiti Teknologi MARA","Jabatan Kesihatan Negeri Negeri Sembilan"],"authorFamilyName":["De Stercke","Buytaert","Mijic","Templeton","Zulkafli","Ab Rahman","Tahir","Rahmat","Jayaramu","Salwa Ibrahim","Ismail","Juraiza Ishak","Abdul Rahman"],"authorFullName":["De Stercke, S.","Buytaert, W.","Mijic, A.","Templeton, M.","Zulkafli, Z.","Ab Rahman, J.","Tahir, W.","Rahmat, F.","Jayaramu, V.","Salwa Ibrahim, S.","Ismail, M.","Juraiza Ishak, A.","Abdul Rahman, R.Z."],"authorGivenName":["S.","W.","A.","M.","Z.","J.","F.","V.","R. 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Also included are the spatial polygons for each of the place studies.","documentType":"GEMINI_DOCUMENT","familyName":["De Stercke","Buytaert","Mijic","Templeton","Zulkafli","Ab Rahman","Tahir","Rahmat","Jayaramu","Salwa Ibrahim","Ismail","Juraiza Ishak","Abdul Rahman"],"fullName":["De Stercke, S.","Buytaert, W.","Mijic, A.","Templeton, M.","Zulkafli, Z.","Ab Rahman, J.","Tahir, W.","Rahmat, F.","Jayaramu, V.","Salwa Ibrahim, S.","Ismail, M.","Juraiza Ishak, A.","Abdul Rahman, R.Z."],"funder":["Natural Environment Research Council","Ministry of Higher Education Malaysia"],"givenName":["S.","W.","A.","M.","Z.","J.","F.","V.","R. Z."],"grant":["NE/S003053/1","NEWTON/1/2018/WAB05/UPM/1"],"identifier":"56f42170-3678-4586-b8c8-9b05f03125e1","incomingCitationCount":0,"keyword":["Brazil","Malaysia","Philippines","Argentina","China","Sri Lanka","Leptospirosis","Discharge","hydrology","atmospheric precipitation","soil moisture"],"keywordsOther":["Leptospirosis","Discharge","hydrology","atmospheric precipitation","soil moisture"],"keywordsPlace":["Brazil","Malaysia","Philippines","Argentina","China","Sri Lanka"],"licence":"Open government licence","lineage":"Leptospirosis case numbers were extracted from health department statistics or from peer-reviewed literature. Source data for the hydrometeorological variables were in raster format and were converted into area-weighted daily average for each of the place studies. All source data were from publicly available datasets. Polygons were obtained from official country data stores or via OpenStreetMap.","locations":["POLYGON((-180 -90, -180 90, 180 90, 180 -90, -180 -90))"],"metadataDate":"2026-06-29T18:01:48.000Z","orcid":["https://orcid.org/0000-0003-0702-1691","https://orcid.org/0000-0001-6994-4454","https://orcid.org/0000-0001-7096-9405","https://orcid.org/0000-0001-6271-8593","https://orcid.org/0000-0003-4323-1194","https://orcid.org/0000-0002-4792-189X","https://orcid.org/0000-0003-0703-9090"],"organisation":["Imperial College London","Universiti Putra Malaysia","International Islamic University Malaysia","Universiti Teknologi MARA","Jabatan Kesihatan Negeri Negeri Sembilan","NERC EDS Environmental Information Data Centre"],"publicationDate":"2023-08-16T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/56f42170-3678-4586-b8c8-9b05f03125e1","10.5285/56f42170-3678-4586-b8c8-9b05f03125e1","doi:10.5285/56f42170-3678-4586-b8c8-9b05f03125e1"],"resourceType":"Dataset","rightsHolder":["Imperial College London"],"ror":["https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains Leptospirosis case numbers for a number of place studies in Brazil, Malaysia, Philippines, Argentina, China and Sri Lanka. Leptospirosis case numbers are provided as weekly or monthly case numbers and cover the period 1978 to 2020, although timelines…","state":"published","title":"Hydro-epidemiological data for Leptospirosis for areas in Brazil, Malaysia, Philippines, Argentina, China and Sri Lanka, 1978-2020","version":1.0,"view":["public","hajd"]},{"authorAffiliation":["Royal Botanic Gardens Kew","Imperial College London","Imperial College London ","University of Environment and Sustainable Development ","Ghana Wildlife Society ","University of Belgrade ","Copperbelt University ","International Institute for Environment and Development ","Kwame Nkrumah University of Science and Technology ","Sentinel Project ","University of Cambridge ","Livingstone Museum ","Panthera Wild Cat Conservation  ","University of Stirling ","Kigelia Solutions Ltd "],"authorFamilyName":["Devenish","Montauban","Dellavalle","Annorbah","Asamoah","Boafo","Budinski","Chibesa","Downe","Dwumah","Ford","Jamie","Kenyenso","Mwale","Mwila","Taylor-Boyd","Willems","Tobias"],"authorFullName":["Devenish, A.J.M.","Montauban, C.M.","Dellavalle, A.","Annorbah, N.N.D.","Asamoah, A.","Boafo, K.","Budinski, I.","Chibesa, M.","Downe, B.","Dwumah, K.A.","Ford, M.","Jamie, G.","Kenyenso, S.","Mwale, M.","Mwila, J.","Taylor-Boyd, H.","Willems, F.","Tobias, J.A."],"authorGivenName":["A.J.M.","C.M.","A.","N.N.D.","K.","I.","M.","B.","K.A.","G.","S.","J.","H.","F.","J.A."],"authorOrcid":["https://orcid.org/0000-0001-5240-622X","https://orcid.org/0000-0002-7501-3389","https://orcid.org/0009-0001-2761-5801","https://orcid.org/0000-0002-1977-8344","https://orcid.org/0000-0001-8834-4200","https://orcid.org/0000-0003-3119-9991","https://orcid.org/0009-0000-2331-6807","https://orcid.org/0009-0001-9201-8392","https://orcid.org/0000-0001-9617-4344","https://orcid.org/0000-0003-2429-6179"],"authorRor":["https://ror.org/00ynnr806","https://ror.org/041kmwe10","https://ror.org/04tvaz881","https://ror.org/02qcpws31","https://ror.org/02qsmb048","https://ror.org/03fgtjr33","https://ror.org/02srvn192","https://ror.org/00cb23x68","https://ror.org/013meh722","https://ror.org/03t56ts61","https://ror.org/045wgfr59"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset consists of bird observation and mist netting records for both bats and birds collected from December 2020 to March 2023. The data collection employed a mixed-methods approach incorporating point counts and mist netting techniques. Surveys were carried out in multiple localities, encompassing three sites in Ghana and 5 in Zambia. \n\nThe data were collected as part of the Social and Environmental Trade-Offs in African Agriculture (Sentinel) project, funded by UK Research and Innovation via the Global Challenges Research Fund (Grant Number: ES/P011306/1). ","documentType":"GEMINI_DOCUMENT","familyName":["Devenish","Montauban","Dellavalle","Annorbah","Asamoah","Boafo","Budinski","Chibesa","Downe","Dwumah","Ford","Jamie","Kenyenso","Mwale","Mwila","Taylor-Boyd","Willems","Tobias"],"fullName":["Devenish, A.J.M.","Montauban, C.M.","Dellavalle, A.","Annorbah, N.N.D.","Asamoah, A.","Boafo, K.","Budinski, I.","Chibesa, M.","Downe, B.","Dwumah, K.A.","Ford, M.","Jamie, G.","Kenyenso, S.","Mwale, M.","Mwila, J.","Taylor-Boyd, H.","Willems, F.","Tobias, J.A.","Devenish, A."],"funder":["Natural Environment Research Council","Economic and Social Research Council"],"givenName":["A.J.M.","C.M.","A.","N.N.D.","K.","I.","M.","B.","K.A.","G.","S.","J.","H.","F.","J.A.","Adam"],"grant":["ES/P011306/1"],"identifier":"c3b89279-ba7d-4df3-bc6c-82ffcaeaad3d","incomingCitationCount":0,"keyword":["Ghana","Zambia","sub–Saharan Africa","Biodiversity","Agriculture","Agricultural expansion","Biodiversity impacts","Forest loss","bat","bird","deforestation"],"keywordsOther":["Agricultural expansion","Biodiversity impacts","Forest loss","bat","bird","deforestation"],"keywordsPlace":["Ghana","Zambia","sub–Saharan Africa"],"keywordsTheme":["Biodiversity","Agriculture"],"licence":"Open government licence","lineage":"Data were collected between December 2020 and March 2023 in several localities within Ghana (n = 3) and Zambia (n = 5). A two-tier stratified random sampling design was employed to select the study sites within each locality. Initially, a spatially referenced grid measuring 1 km × 1 km was used to overlay the selected locality, segregating it into potential study areas. Following this, each site was categorised into one of five broad classifications based on the dominant land type within the grid cell:\n\n•\tNot Applicable (NA): Areas unsuitable for sampling, such as urban centres.\n•\tAgriculture Only: Regions where over 95% of the grid cell is covered by agricultural land.\n•\tForest edge: Locations with 25-75% of the grid cell encompassed by forest land.\n•\tForest: Regions where more than 95% of the grid cell is forest land.\n\nA subset of sites within the categories of 'Agriculture,' 'Forest edge,' and 'Forest' were randomly selected for sampling. \n\nAt each survey point, birds were surveyed using a standardised point count methodology (Gregory et al., 2004). The sampling at these locations was conducted from dawn and lasted approximately 3 hours (with some variation depending on weather conditions), a timeframe chosen to coincide with the peak activity of forest birds. \n\nSurveying for bats was conducted at the same locations used for bird mist netting. A combination of mist-nets and harp traps were deployed at each site, with sampling taking place on separate nights. Traps were established at sunset and operated for a minimum duration of 4 hours, with regular checks conducted every 15 to 30 minutes.\n\nSeveral data inputters were used to digitally input the field data sheets. Then the completed dataset was compiled, error checked and validated.\n","locations":["POLYGON((-3.911 -20.296, -3.911 12.099, 32.563 12.099, 32.563 -20.296, -3.911 -20.296))"],"metadataDate":"2026-06-29T16:18:25.000Z","orcid":["https://orcid.org/0000-0001-5240-622X","https://orcid.org/0000-0002-7501-3389","https://orcid.org/0009-0001-2761-5801","https://orcid.org/0000-0002-1977-8344","https://orcid.org/0000-0001-8834-4200","https://orcid.org/0000-0003-3119-9991","https://orcid.org/0009-0000-2331-6807","https://orcid.org/0009-0001-9201-8392","https://orcid.org/0000-0001-9617-4344","https://orcid.org/0000-0003-2429-6179"],"organisation":["Royal Botanic Gardens Kew","Imperial College London","Imperial College London ","University of Environment and Sustainable Development ","Ghana Wildlife Society ","University of Belgrade ","Copperbelt University ","International Institute for Environment and Development ","Kwame Nkrumah University of Science and Technology ","Sentinel Project ","University of Cambridge ","Livingstone Museum ","Panthera Wild Cat Conservation  ","University of Stirling ","Kigelia Solutions Ltd ","Royal Botanic Gardens Kew ","NERC EDS Environmental Information Data Centre","University of Ghana"],"publicationDate":"2024-04-16T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c3b89279-ba7d-4df3-bc6c-82ffcaeaad3d","10.5285/c3b89279-ba7d-4df3-bc6c-82ffcaeaad3d","doi:10.5285/c3b89279-ba7d-4df3-bc6c-82ffcaeaad3d"],"resourceType":"Dataset","rightsHolder":["Imperial College London","Copperbelt University ","University of Ghana"],"ror":["https://ror.org/00ynnr806","https://ror.org/041kmwe10","https://ror.org/04tvaz881","https://ror.org/02qcpws31","https://ror.org/02qsmb048","https://ror.org/03fgtjr33","https://ror.org/02srvn192","https://ror.org/00cb23x68","https://ror.org/013meh722","https://ror.org/03t56ts61","https://ror.org/045wgfr59","https://ror.org/04xw4m193","https://ror.org/01r22mr83"],"shortenedDescription":"This dataset consists of bird observation and mist netting records for both bats and birds collected from December 2020 to March 2023. The data collection employed a mixed-methods approach incorporating point counts and mist netting techniques. Surveys were carried…","state":"published","title":"Bat and bird survey data from different agricultural land use gradients in Ghana and Zambia, 2020-2023","topic":["0/Biodiversity/","0/Agriculture/"],"version":1.0,"view":["public","clwe"]},{"authorAffiliation":["Pondicherry University","Indian Institute of Technology BHU","Aarupadai Veedu Medical College & Hospital","Imperial College London"],"authorFamilyName":["RU","Suseela","Patharaj","Kumaresan","Pan","Vieira","Sriskandan","Freeman","Giakoumis","Voulvoulis","Selvin","Ragunathan","Muthu"],"authorFullName":["RU, V.P.N.","Suseela, M.N.L.","Patharaj, G.","Kumaresan, T.N.","Pan, S.","Vieira, A.","Sriskandan, S.","Freeman, A.","Giakoumis, T.","Voulvoulis, N.","Selvin, J.","Ragunathan, L.","Muthu, M.S."],"authorGivenName":["Vishnu Prasad Nair","Medapati Nikitha Lakshmi","Gokul","T.N","Sayaree","Ana","Shiranee","Anna","Theodoros","Nick","Jospeh","Latha","M.S"],"authorRor":["https://ror.org/01a3mef16","https://ror.org/01kh5gc44","https://ror.org/02jz4rx70","https://ror.org/041kmwe10"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"These datasets contain information about the physicochemical properties of water samples taken from Pondicherry and Chennai in 2023 and 2024. Water samples were collected from river, lake, canal and tank water bodies in Pondicherry and Chennai, with locations selected due to their proximity to antimicrobial manufacturing sites. The physicochemical properties of each sample were analysed to determine water quality at each site and how this may be impacted by local antimicrobial pollution. Variables such as; temperature, oxidation reduction potential, salinity, pH, dissolved oxygen content, conductivity, resistivity, total dissolved solids, atmospheric pressure and seawater sigma were accounted for.","documentType":"GEMINI_DOCUMENT","familyName":["Voulvoulis","RU","Suseela","Patharaj","Kumaresan","Pan","Vieira","Sriskandan","Freeman","Giakoumis","Selvin","Ragunathan","Muthu"],"fullName":["Voulvoulis, N.","RU, V.P.N.","Suseela, M.N.L.","Patharaj, G.","Kumaresan, T.N.","Pan, S.","Vieira, A.","Sriskandan, S.","Freeman, A.","Giakoumis, T.","Selvin, J.","Ragunathan, L.","Muthu, M.S."],"funder":["Natural Environment Research Council"],"givenName":["Nick","Vishnu Prasad Nair","Medapati Nikitha Lakshmi","Gokul","T.N","Sayaree","Ana","Shiranee","Anna","Theodoros","Jospeh","Latha","M.S"],"grant":["NE/T013184/1"],"identifier":"62fe92d8-db54-4285-9617-573e77a55c4b","incomingCitationCount":0,"keyword":["Water quality","Pollution","Environmental risk","Chennai","Pondicherry","Puducherry","Physicochemical","AMR","Antimicrobial resistance","India","Antimicrobial manufacturing","Antibiotic manufacturing","Pharmaceutical pollution","Pharmaceutical manufacturing waste","Water pollution"],"keywordsOther":["Chennai","Pondicherry","Puducherry","Water quality","Physicochemical","AMR","Antimicrobial resistance","India","Antimicrobial manufacturing","Antibiotic manufacturing","Pharmaceutical pollution","Pharmaceutical manufacturing waste","Water pollution"],"keywordsTheme":["Water quality","Pollution","Environmental risk"],"licence":"Open government licence","lineage":"Samples were collected following a standardized operating procedure mutually agreed upon by the collaborating partners. For water samples, collection was performed at depths ranging from 1 to 5 meters using a sterile container attached to a pulley system. Control samples were collected from upstream sites selected to represent areas unaffected by pollution from manufacturing sources.  All samples were collected in triplicates to ensure reproducibility and statistical reliability with composite samples created from three sampling points in each location. Duplicate samples were also randomly collected as part of quality control. \n\nParameters were measured in situ using a portable multiparameter Aquaprobe AP-200 with a GPS Aquameter (Aquaread AP 2000).  Initial data entries were recorded manually on paper and subsequently digitized into Excel spreadsheets. No imputation or gap-filling procedures were applied to the dataset. In cases where certain parameters exhibited readings below the detection threshold, the measurement units automatically shifted to a lower metric scale. For example, dissolved oxygen concentrations were recorded in mg/L by default but were represented in µg/L for particularly low-concentration samples. For the sake of consistency and uniformity across the dataset, all such values were converted back to the default unit of mg/L. \n\nSamples were transported to the laboratory on the same day in a refrigerated isothermal container and stored at −20 °C until analysis to preserve their integrity. Upon arrival, the samples were processed immediately for both culture-based microbiological analyses and metagenomic DNA extraction, thereby maintaining sample freshness and minimizing potential degradation. Bacterial isolates obtained from each sampling site were preserved as glycerol stocks and stored at −80°C to maintain viability for future analyses.\n\nDue to a lack of water at the site because of warm conditions, no water samples were collected from PSL10 in 2023. The levels were similarly low the following year, so this site was excluded from water and physicochemical analysis.","locations":["POLYGON((79.631 11.877, 79.631 12.692, 80.198 12.692, 80.198 11.877, 79.631 11.877))"],"metadataDate":"2026-06-29T16:20:53.000Z","organisation":["Imperial College London","Pondicherry University","Indian Institute of Technology BHU","Aarupadai Veedu Medical College & Hospital","NERC EDS Environmental Information Data Centre"],"publicationDate":"2026-01-18T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/62fe92d8-db54-4285-9617-573e77a55c4b","10.5285/62fe92d8-db54-4285-9617-573e77a55c4b","doi:10.5285/62fe92d8-db54-4285-9617-573e77a55c4b"],"resourceType":"Dataset","rightsHolder":["Imperial College London"],"ror":["https://ror.org/041kmwe10","https://ror.org/01a3mef16","https://ror.org/01kh5gc44","https://ror.org/02jz4rx70","https://ror.org/04xw4m193"],"shortenedDescription":"These datasets contain information about the physicochemical properties of water samples taken from Pondicherry and Chennai in 2023 and 2024. Water samples were collected from river, lake, canal and tank water bodies in Pondicherry and Chennai, with locations selected…","state":"published","supplementalDescription":["Whole-genome sequencing of multi-drug-resistant bacteria","Metagenomic data"],"title":"Physicochemical parameters of Chennai and Pondicherry water samples near antimicrobial manufacturing sites, India, 2023-2024","topic":["0/Water quality/","0/Pollution/","0/Environmental risk/"],"version":1.0,"view":["public","elsdhi"]},{"authorAffiliation":["Imperial College London","University of Oxford","Lawrence Berkeley National Laboratory"],"authorFamilyName":["Chrapkiewicz","Lipp","Barron","Barnes","Roberts"],"authorFullName":["Chrapkiewicz, K.","Lipp, A.","Barron, L.","Barnes, R.","Roberts, G."],"authorGivenName":["K.","A.","L.","R.","G."],"authorOrcid":["https://orcid.org/0000-0001-6949-9741","https://orcid.org/0000-0003-2130-8576","https://orcid.org/0000-0001-5986-3853","https://orcid.org/0000-0002-6487-8117"],"authorRor":["https://ror.org/041kmwe10","https://ror.org/052gg0110","https://ror.org/02jbv0t02"],"availability":"Unknown","catalogue":"eidc","dataFormat":["Python","Comma-separated values (CSV)","NetCDF","Portable Network Graphics (png)","yaml","TIFF"],"description":"This resource contains python code to carry out source apportionment of chemicals in river water. Convex optimisation is used to efficiently apportion tracer and pollutant sources from point concentration observations. A minimum working example of the python code and the open-source framework used for the analysis is also provided. Chemical data collected in 2019-2020 along the River Wandle (Thames, UK) were used to test the code and example results are also included. \n\nThe code assumes conservative mixing and hence is likely to be best suited to assessing chronic sources of pollution (i.e., sources that are temporally invariant, or as near as, during the sampling campaign).","documentType":"GEMINI_DOCUMENT","familyName":["Chrapkiewicz","Lipp","Barron","Barnes","Roberts"],"fullName":["Chrapkiewicz, K.","Lipp, A.","Barron, L.","Barnes, R.","Roberts, G."],"funder":["Natural Environment Research Council"],"givenName":["K.","A.","L.","R.","G.","Gareth"],"grant":["NE/X010805/1"],"identifier":"8ae3c419-611d-4bee-ad41-1c9081e79975","incomingCitationCount":0,"keyword":["Thames","Pollution","Hydrology","source apportionment","chemicals","environmental contaminant","pollutant","waterway","river","stream"],"keywordsOther":["source apportionment","chemicals","environmental contaminant","pollutant","waterway","river","stream"],"keywordsPlace":["Thames"],"keywordsTheme":["Pollution","Hydrology"],"licence":"Open government licence","lineage":"The code was developed as part of a six-month project funded via a NERC Exploring the Frontiers grant. K. Chrapkiewicz was the principal code developer with A. Lipp. We made use of existing models developed by co-investigators A. Lipp and R. Barnes. This work built upon the optimisation techniques developed by A. Lipp, G. Roberts and colleagues. The data inverted in this study were generated L Barron and colleagues (Egli et al., 2023). \n\nTo run the code please see the readme files that accompany this repository. Briefly, once the code is downloaded and installed a minimum working example can be run using > python examples/mwe.py. Examples of data and their associated formats are included with this repository. The raw chemical data are also included. Examples of outputs in the form of figures (.png format) are also included. With regards to quality assurance, a synthetic data inversion was conducted and an Analysis of Variance and an assessment of the uncertainties were also carried out. Further details are provided in the supporting documentation and cited papers.   ","metadataDate":"2026-06-27T18:38:30.000Z","orcid":["https://orcid.org/0000-0001-6949-9741","https://orcid.org/0000-0003-2130-8576","https://orcid.org/0000-0001-5986-3853","https://orcid.org/0000-0002-6487-8117"],"organisation":["Imperial College London","University of Oxford","Lawrence Berkeley National Laboratory","NERC EDS Environmental Information Data Centre"],"publicationDate":"2024-05-01T00:00:00.000Z","recordType":"Software","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8ae3c419-611d-4bee-ad41-1c9081e79975","10.5285/8ae3c419-611d-4bee-ad41-1c9081e79975","doi:10.5285/8ae3c419-611d-4bee-ad41-1c9081e79975"],"resourceType":"Software","rightsHolder":["Imperial College London"],"ror":["https://ror.org/041kmwe10","https://ror.org/052gg0110","https://ror.org/02jbv0t02","https://ror.org/04xw4m193"],"shortenedDescription":"This resource contains python code to carry out source apportionment of chemicals in river water. 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A minimum working example of the python code and…","state":"published","supplementalName":["A One-Health environmental risk assessment of contaminants of emerging concern in London’s waterways throughout the SARS-CoV-2 pandemic"],"title":"Python code to identify sources of chemical pollutants in waterways","topic":["0/Pollution/","0/Hydrology/"],"version":1.0,"view":["public","jenroe"]},{"authorAffiliation":["Imperial College London"],"authorFamilyName":["Waring","Lancastle"],"authorFullName":["Waring, B.","Lancastle, L."],"authorGivenName":["B.","L."],"authorOrcid":["https://orcid.org/0000-0002-8457-5164"],"authorRor":["https://ror.org/041kmwe10"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This dataset contains soil biogeochemical data collected along gradients of windthrow disturbance in Kielder Forest, Northumberland, England, in summer 2022 as part of the Monitoring Underground Disturbance (MUD) BioBank. We established ~200 m transects at 10 sites (defined by common stand type, topography) and established 50m2 sampling plots in three different disturbance regimes across each transect. Soils were analysed for moisture content, organic carbon and nitrogen, and root biomass.","documentType":"GEMINI_DOCUMENT","familyName":["Waring","Lancastle"],"fullName":["Waring, B.","Lancastle, L."],"funder":["Natural Environment Research Council"],"givenName":["B.","L."],"grant":["NE/X003426/1"],"identifier":"7811769d-3e11-4b79-b781-765ca9cfd83e","incomingCitationCount":0,"keyword":["Soil","Soil biogeochemistry","carbon","soil nitrogen","soil carbon","fine roots"],"keywordsOther":["Soil biogeochemistry","carbon","soil nitrogen","soil carbon","fine roots"],"keywordsTheme":["Soil"],"licence":"Open government licence","lineage":"Samples were collected and analysed by L. Lancastle. We used a ThermoFlash Elemental Analyser to obtain carbon and nitrogen data, and root biomass was determined gravimetrically. Soil carbon and nitrogen content are recorded in units of percent dry mass, and root biomass data are reported in units of mg cm-3. Data were quality-checked and made available by B. Waring – all original observations are provided, no outliers have been deleted.","locations":["POLYGON((-2.732 55.084, -2.732 55.285, -2.42 55.285, -2.42 55.084, -2.732 55.084))"],"metadataDate":"2026-06-29T16:56:01.000Z","orcid":["https://orcid.org/0000-0002-8457-5164"],"organisation":["Imperial College London","NERC EDS Environmental Information Data Centre"],"publicationDate":"2024-03-27T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7811769d-3e11-4b79-b781-765ca9cfd83e","10.5285/7811769d-3e11-4b79-b781-765ca9cfd83e","doi:10.5285/7811769d-3e11-4b79-b781-765ca9cfd83e"],"resourceType":"Dataset","rightsHolder":["Imperial College London"],"ror":["https://ror.org/041kmwe10","https://ror.org/04xw4m193"],"shortenedDescription":"This dataset contains soil biogeochemical data collected along gradients of windthrow disturbance in Kielder Forest, Northumberland, England, in summer 2022 as part of the Monitoring Underground Disturbance (MUD) BioBank. We established ~200 m transects at 10 sites…","state":"published","title":"Soil biogeochemical data from gradients of windthrow disturbance, Kielder Forest, England, summer 2022","topic":["0/Soil/"],"version":1.0,"view":["public","margla"]},{"authorAffiliation":["Imperial College London","University of Helsinki","Université Bourgogne Franche-Comté","University of Iceland"],"authorFamilyName":["O'Gorman","Robinson","McLaughlin","Marteinsdóttir"],"authorFullName":["O'Gorman, E.J.","Robinson, S.I.","McLaughlin, Ó.B.","Marteinsdóttir, B."],"authorGivenName":["E.J.","S.I","Ó.B.","B."],"authorOrcid":["http://orcid.org/0000-0003-4507-5690"],"authorRor":["https://ror.org/041kmwe10","https://ror.org/040af2s02","https://ror.org/02dn7x778","https://ror.org/01db6h964"],"availability":"Available","catalogue":"eidc","dataFormat":["Comma-separated values (CSV)"],"description":"This is a dataset of environmental data, percentage vegetation cover, total invertebrate abundance, and mean invertebrate body mass, sampled at 96 soil habitat patches in the Hengill geothermal valley, Iceland, in July 2013. The habitat patches span a temperature gradient of 7-38 degrees C, yet they occur within 2 km of each other and have similar soil moisture, pH, total carbon, and total nitrogen. Effects of soil temperature on the structure and diversity of plant and invertebrate communities using this dataset are presented in Robinson et al. (2018), published in the Journal of Animal Ecology.","documentType":"GEMINI_DOCUMENT","familyName":["O'Gorman","Robinson","McLaughlin","Marteinsdóttir"],"fullName":["O'Gorman, E.J.","Robinson, S.I.","McLaughlin, Ó.B.","Marteinsdóttir, B."],"funder":["Natural Environment Research Council"],"givenName":["E.J.","S.I","Ó.B.","B."],"grant":["NE/L011840/1"],"identifier":"0f074839-1630-4ccd-aa63-84d0da16b28a","incomingCitationCount":1,"keyword":["Hengill","Iceland","Climate and climate change","Environmental survey","Soil","Biodiversity"],"keywordsPlace":["Hengill","Iceland"],"keywordsTheme":["Climate and climate change","Environmental survey","Soil","Biodiversity"],"licence":"Open government licence","lineage":"Sampling was carried out in July 2013 in the Hengill geothermal valley, Iceland. GPS coordinates and the temperature, moisture, and pH of the soil at each habitat patch were recorded during the field expedition. Dried soil samples were shipped to the Forest Research Centre for Ecosystems, Society, and Biosecurity (Farnham, UK), where total carbon and total nitrogen were quantified. Photographs were taken of plant community quadrats during the expedition and percentage cover of each species was enumerated later. Invertebrate samples collected from pitfall trapping during the expedition were preserved in 70 percent ethanol, shipped to Queen Mary University of London, and later identified under a microscope in the laboratory.","locations":["POLYGON((-25.562 62.418, -25.562 67.591, -11.779 67.591, -11.779 62.418, -25.562 62.418))"],"metadataDate":"2026-06-29T18:19:55.000Z","orcid":["http://orcid.org/0000-0003-4507-5690"],"organisation":["Imperial College London","University of Helsinki","Université Bourgogne Franche-Comté","University of Iceland","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"publicationDate":"2017-12-20T00:00:00.000Z","recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0f074839-1630-4ccd-aa63-84d0da16b28a","10.5285/0f074839-1630-4ccd-aa63-84d0da16b28a","doi:10.5285/0f074839-1630-4ccd-aa63-84d0da16b28a"],"resourceType":"Dataset","rightsHolder":["Imperial College London"],"ror":["https://ror.org/041kmwe10","https://ror.org/040af2s02","https://ror.org/02dn7x778","https://ror.org/01db6h964","https://ror.org/04xw4m193"],"shortenedDescription":"This is a dataset of environmental data, percentage vegetation cover, total invertebrate abundance, and mean invertebrate body mass, sampled at 96 soil habitat patches in the Hengill geothermal valley, Iceland, in July 2013. The habitat patches span a temperature gradient…","state":"published","title":"Invertebrate biomass, vegetation cover, and  environmental data from Hengill, Iceland","topic":["0/Climate and climate change/","0/Environmental survey/","0/Soil/","0/Biodiversity/"],"version":1.0,"view":["public","shar1"]}],"rows":20,"url":"http://catalogue.ceh.ac.uk:443/eidc/documents?facet=rightsHolder%7CImperial%20College%20London"}