{"numFound":23,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CUniversity+of+Cambridge&facet=resourceStatus%7CAvailable","nextPage":"http://catalogue.ceh.ac.uk/eidc/documents?page=2&facet=rightsHolder%7CUniversity+of+Cambridge&facet=resourceStatus%7CAvailable","results":[{"publicationDate":"2016-02-29T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["B.R.","Tom","I."],"authorFamilyName":["Evans","Spencer","Möller"],"authorFullName":["Evans, B.R.","Spencer, T.","Möller, I."],"authorRor":["https://ror.org/013meh722"],"catalogue":"eidc","description":"The dataset details global positioning system (GPS) locations recorded for survey quadrats at six UK saltmarsh sites. Three of the sites were in Morecambe Bay, North West England and three of the sites were in Essex, South East England, each of these sites consisted of a salt marsh area and adjacent mudflat area. Each site comprised 22 quadrats on the unvegetated mudflat and 22 quadrats on the salt marsh. The locations indicated by this dataset correspond to the south-east corner of the quadrats which were 1m square and oriented with their sides aligned North-South and East-West.\n\nThis data was collected as part of Coastal Biodiversity and Ecosystem Service Sustainability (CBESS): NE/J015644/1. The project was funded with support from the Biodiversity and Ecosystem Service Sustainability (BESS) programme. BESS is a six-year programme (2011-2017) funded by the UK Natural Environment Research Council (NERC) and the Biotechnology and Biological Sciences Research Council (BBSRC) as part of the UK's Living with Environmental Change (LWEC) programme.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J015644/1"],"identifier":"e07386ba-f7a8-490d-99f7-1ce1ae14e95d","incomingCitationCount":0,"givenName":["Tom","B.R.","I."],"familyName":["Spencer","Evans","Möller"],"fullName":["Spencer, T.","Evans, B.R.","Möller, I."],"keyword":["Essex","Morecambe Bay","United Kingdom","CBESS","BESS","Surface elevation","geopositioning","dGPS","GPS","GNSS","geolocation","salt marsh","mudflat","quadrat"],"keywordsPlace":["Essex","Morecambe Bay","United Kingdom"],"keywordsProject":["CBESS","BESS"],"keywordsOther":["Surface elevation","geopositioning","dGPS","GPS","GNSS","geolocation","salt marsh","mudflat","quadrat"],"licence":"Open government licence","lineage":"GPS locations and elevations were recorded using a Leica GS08 GNSS system with n-board 3D coordinate quality check of 50mm (above which points were rejected). Surveys were conducted within two weeks prior to, or during, the main CBESS sampling campaigns in Winter and Summer of 2013. Data were recorded in OSGB1936(2), Northings, Eastings and elevation relative to Ordnance Datum Newlyn. No subsequent processing has been undertaken.","locations":["POLYGON((-3 51.5, -3 54.25, 1 54.25, 1 51.5, -3 51.5))"],"organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e07386ba-f7a8-490d-99f7-1ce1ae14e95d","10.5285/e07386ba-f7a8-490d-99f7-1ce1ae14e95d"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","title":"Coastal Biodiversity and Ecosystem Service Sustainability (CBESS) global positioning system (GPS) locations of survey quadrats in saltmarsh and mudflat habitats ","version":1.0,"view":["public","hajd"],"shortenedDescription":"The dataset details global positioning system (GPS) locations recorded for survey quadrats at six UK saltmarsh sites. Three of the sites were in Morecambe Bay, North West England and three of the sites were in Essex, South East England, each of these sites consisted..."},{"publicationDate":"2024-01-15T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["K.E.","J.J."],"authorFamilyName":["Criswell","Head"],"authorFullName":["Criswell, K.E.","Head, J.J."],"authorRor":["https://ror.org/013meh722"],"catalogue":"eidc","description":"Computed tomography (CT) scans of 212 museum specimens, including mostly cartilaginous and bony fishes as well as several reptiles and amphibians, were obtained to quantitatively study vertebral column morphology and regionalisation. The specimens are housed in the University of Cambridge Museum of Zoology or the Natural History Museum in London (specimen identification numbers can be found in the supporting documentation). \n\nThese data consist of \n1) series of tiff images that can be imported into CT segmenting software to reconstruct their shape in three dimensions; \n2) STL files of each vertebra for a subset of the specimens scanned;\n3) 3D landmark coordinates or measurements for each vertebra for a subset of taxa scanned;\n4) tables of results from regionalisation analyses, and\n5) photographs of eight fossil fish specimens\n\nSupplemental files include details of the data collection procedures, specimen identification numbers and updated taxonomy, and CT scanning parameters for all scans.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S000739/1"],"identifier":"1c76e443-da02-4bc4-a041-0f79adc016be","incomingCitationCount":0,"givenName":["K.E.","J.J."],"familyName":["Criswell","Head"],"fullName":["Criswell, K.E.","Head, J.J."],"keyword":["Evolutionary ecology","morphology","fish","anatomy","axial regionalisation","vertebral column"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["morphology","fish","anatomy","axial regionalisation","vertebral column"],"licence":"Open government licence","lineage":"Computed tomography scans of museum specimens were obtained at the Cambridge Biotomography Centre using a Nikon  XTEK H 225 ST MicroCT scanner. Post-processing to optimise CT reconstructions and minimise scan artefacts was performed in Nikon’s CT-Pro program, and scan reslicing was performed using VG STUDIOMAX (Volume Graphics). Segmentation of CT scans resulting STL files was performed in either Mimics (Materialise) or VG STUDIOMAX (Volume Graphics). Landmark coordinates of vertebrae were plotted using Stratovan Checkpoint. Regionalisation analyses were conducted in the R software environment, with method details described in the supporting documentation for the data ","organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1c76e443-da02-4bc4-a041-0f79adc016be","10.5285/1c76e443-da02-4bc4-a041-0f79adc016be"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","supplementalName":["hox gene expression predicts tetrapod-like axial regionalization in the skate, Leucoraja erinacea"],"title":"Morphological and morphometric data on the axial skeletons of vertebrates from museum specimens","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","shar1"],"shortenedDescription":"Computed tomography (CT) scans of 212 museum specimens, including mostly cartilaginous and bony fishes as well as several reptiles and amphibians, were obtained to quantitatively study vertebral column morphology and regionalisation. The specimens are housed in the..."},{"publicationDate":"2021-02-18T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["J. ","H."],"authorFamilyName":["Royles","Griffiths"],"authorFullName":["Royles, J.","Griffiths, H."],"authorOrcid":["https://orcid.org/0000-0003-0489-6863","https://orcid.org/0000-0002-3009-6563"],"catalogue":"eidc","description":"The dataset contains monthly measurements of chlorophyll fluorescence measured using a Walz MINI-PAM II. The chlorophyll flouresence of growing tips of moss samples were measured  following saturating pulses three times in the field before dark adaptation three further measurements. Yield of photosystem II, non-photochemical quenching  and electron transport rate were calculated.\n\nField work was carried out approximately monthly from April 2017 until September 2018.","documentType":"GEMINI_DOCUMENT","identifier":"249034d3-2f4d-42c6-a3cd-113ff3a960c5","incomingCitationCount":0,"givenName":["J. ","H.","Jessica"],"familyName":["Royles","Griffiths"],"fullName":["Royles, J.","Griffiths, H."],"keyword":["Stable isotope","chlorophyll fluorescence","Yield","non-photochemical quenching","electron transport rate","Water","East Anglia","Sphagnales","Dicranales","Polytrichles","cellulose","photosynthesis","moss"],"keywordsOther":["Stable isotope","chlorophyll fluorescence","Yield","non-photochemical quenching","electron transport rate","Water","East Anglia","Sphagnales","Dicranales","Polytrichles","cellulose","photosynthesis","moss"],"licence":"Open government licence","lineage":"Data was collected by the authors. As data were generated checks were made to ensure accuracy (certified reference materials used in isotope analysis) and precision (repeat measurements) were within tolerance limits. ","locations":["POLYGON((0.29 52.29, 0.29 52.825, 0.628 52.825, 0.628 52.29, 0.29 52.29))"],"orcid":["https://orcid.org/0000-0003-0489-6863","https://orcid.org/0000-0002-3009-6563"],"organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/249034d3-2f4d-42c6-a3cd-113ff3a960c5","10.5285/249034d3-2f4d-42c6-a3cd-113ff3a960c5"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/04xw4m193","https://ror.org/013meh722"],"state":"published","title":" Monthly field and dark adapted pulse amplitude modulation (PAM) fluorescence measurements of East Anglian mosses, April 2017 to October 2018","version":1.0,"view":["public","clwe"],"shortenedDescription":"The dataset contains monthly measurements of chlorophyll fluorescence measured using a Walz MINI-PAM II. The chlorophyll flouresence of growing tips of moss samples were measured  following saturating pulses three times in the field before dark adaptation three further..."},{"publicationDate":"2021-02-16T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["J. ","H."],"authorFamilyName":["Royles","Griffiths"],"authorFullName":["Royles, J.","Griffiths, H."],"authorOrcid":["https://orcid.org/0000-0003-0489-6863","https://orcid.org/0000-0002-3009-6563"],"catalogue":"eidc","description":"The dataset contains a key to species and locations of moss samples and water samples collected along with relative water contents for moss samples. The stable carbon (13C/12C) and oxygen (18O/17O) composition of cellulose is presented, along with the stable oxygen (18O/17O) and hydrogen (2H/1H) isotope compositions of fresh water and water samples distilled from moss tissue. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"1e57032c-327a-49c7-bb2e-43921dc116e2","incomingCitationCount":0,"givenName":["J. ","H.","Jessica"],"familyName":["Royles","Griffiths"],"fullName":["Royles, J.","Griffiths, H."],"keyword":["Stable isotope","water","East Anglia","Sphagnales","Dicranales","Polytrichles","cellulose","photosynthesis","isotope","moss"],"keywordsOther":["Stable isotope","water","East Anglia","Sphagnales","Dicranales","Polytrichles","cellulose","photosynthesis","isotope","moss"],"licence":"Open government licence","lineage":"Data was collected by the authors. As data were generated checks were made to ensure accuracy (certified reference materials used in isotope analysis) and precision (repeat measurements) were within tolerance limits. ","locations":["POLYGON((0.066 52.201, 0.066 52.83, 0.637 52.83, 0.637 52.201, 0.066 52.201))"],"orcid":["https://orcid.org/0000-0003-0489-6863","https://orcid.org/0000-0002-3009-6563"],"organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1e57032c-327a-49c7-bb2e-43921dc116e2","10.5285/1e57032c-327a-49c7-bb2e-43921dc116e2"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/04xw4m193","https://ror.org/013meh722"],"state":"published","title":"Monthly analysis of the cellulose and distilled moss water isotope composition for temperate East Anglian mosses","version":1.0,"view":["public","clwe"],"shortenedDescription":"The dataset contains a key to species and locations of moss samples and water samples collected along with relative water contents for moss samples. The stable carbon (13C/12C) and oxygen (18O/17O) composition of cellulose is presented, along with the stable oxygen..."},{"publicationDate":"2023-07-26T00:00:00.000+00:00","authorAffiliation":["Incheon National University","University of Cambridge"],"authorGivenName":["S.","G.G."],"authorFamilyName":["Han","Malliaras"],"authorFullName":["Han, S.","Malliaras, G.G."],"authorOrcid":["https://orcid.org/0000-0001-8588-5466","https://orcid.org/0000-0002-4582-8501"],"authorRor":["https://ror.org/02xf7p935","https://ror.org/013meh722"],"catalogue":"eidc","description":"This dataset is in vitro validation of a potassium sensor that will be inserted into a plant stem. The dataset shows the sensitivity and selectivity of the fabricated potassium sensor. The data was obtained by measuring changes in electrical current with an increase in concentrations of the primary ion (K+) and interfering ion (Na+) to extract the sensitivity and selectivity, respectively using a semiconductor parameter analyser. K+ ion sensing data, measured directly inside a plant stem, are absent as the in vivo experiment should be optimised further.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/T012293/1"],"identifier":"89998967-a974-4136-b650-b9af9f9d6969","incomingCitationCount":0,"givenName":["S.","G.G."],"familyName":["Han","Malliaras"],"fullName":["Han, S.","Malliaras, G.G."],"keyword":["Ion sensors","Implantable sensors","sensor validation","sensor"],"keywordsOther":["Ion sensors","Implantable sensors","sensor validation","sensor"],"licence":"Open government licence","lineage":"The data were generated by measuring electrical current with an increase in ion concentrations stepwise using a semiconductor parameter analyser. There are raw data without data treatment. The applied voltage was 0 V and -0.6 V at the gate and drain terminal, respectively. Recorded output signal was drain current with the unit of ampere. This dataset was recorded in real time. Additionally, for in vitro validation, an artificial sap (Na+ 15 mM, Ca2+ 10 mM, Mg2+ 15 mM) was used with varying a K+ ion concentration.","orcid":["https://orcid.org/0000-0001-8588-5466","https://orcid.org/0000-0002-4582-8501"],"organisation":["Incheon National University","University of Cambridge","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/89998967-a974-4136-b650-b9af9f9d6969","10.5285/89998967-a974-4136-b650-b9af9f9d6969"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/02xf7p935","https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","title":"Phytoelectronic potassium sensor performance data","version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset is in vitro validation of a potassium sensor that will be inserted into a plant stem. The dataset shows the sensitivity and selectivity of the fabricated potassium sensor. The data was obtained by measuring changes in electrical current with an increase..."},{"publicationDate":"2020-07-24T00:00:00.000+00:00","authorAffiliation":["University of Cambridge","Durham University"],"authorGivenName":["J.J.","E.T.","M.J.","E.I.","R.G."],"authorFamilyName":["Baronas","Tipper","Bickle","Stevenson","Hilton"],"authorFullName":["Baronas, J.J.","Tipper, E.T.","Bickle, M.J.","Stevenson, E.I.","Hilton, R.G."],"authorOrcid":["https://orcid.org/0000-0002-4027-3965","https://orcid.org/0000-0003-3540-3558","https://orcid.org/0000-0001-8889-3410","https://orcid.org/0000-0003-3907-443X","https://orcid.org/0000-0002-0499-3332"],"catalogue":"eidc","description":"This dataset contains water flow velocity, discharge, and suspended sediment compositions of the Irrawaddy (Ayeyarwady) River at Pyay, Myanmar\nand the Salween (Thanlwin) River at Hpa-An, Myanmar. The suspended sediment samples and the hydrological data were collected both during peak monsoon\nconditions (August 2017 and August 2018) and peak dry season conditions (February 2018 and May 2019). Water velocity was measured using Acoustic\nDoppler Current Profiler (ADCP) while collecting suspended sediment samples at various depths in the river. \n\nAdditional flow velocity data was collected while laterally crossing the river channel from bank to bank, and was used to calculate total river discharge at these sites. The dataset includes suspended sediment concentrations, particulate organic carbon concentrations, and particle size distributions of sediment samples collected at various depths and locations in the two river channels.","documentType":"GEMINI_DOCUMENT","identifier":"86f17d61-141f-4500-9aa5-26a82aef0b33","incomingCitationCount":3,"givenName":["J.J.","E.T.","M.J.","E.I.","R.G."],"familyName":["Baronas","Tipper","Bickle","Stevenson","Hilton"],"fullName":["Baronas, J.J.","Tipper, E.T.","Bickle, M.J.","Stevenson, E.I.","Hilton, R.G."],"keyword":["Irrawaddy river","Salween river","Myanmar","Discharge","Suspended sediment concentrations","Particle size","Organic carbon","Environmental survey","Water quality","Hydrology","Modelling"],"keywordsPlace":["Irrawaddy river","Salween river","Myanmar","Discharge","Suspended sediment concentrations","Particle size","Organic carbon"],"keywordsTheme":["Environmental survey","Water quality","Hydrology","Modelling"],"licence":"Open government licence","lineage":"Flow velocity was measured using an Acoustic Doppler Current Profiler (ADCP) Rio Grande II 1200 kHz (Teledyne Instruments). deployed on a moving boat. The ADCP was attached on a rigid frame close to the bow, in a down-facing orientation, and the transducer submerged at 40-60 cm depth. Data were collected while the boat crossed the river perpendicular to the flow. Boat position during the transect was recorded using an external GPS unit with horizontal accuracy of <5 m. Between 1 and 5 such transects were collected, depending on the site, with total discharge reproducibility typically better than 6%. Additional flow velocity data were collected during suspended sediment sampling in August 2018 and May 2019 while the boat was drifting with the current.\n\nADCP data were collected and initially processed using WinRiver II software. The data were then exported and further processed using Velocity Mapping Toolbox. Using multiple river cross-sectional transects, a mean cross-section was created for each sampling date, ensuring it was perpendicular to the river channel, and calculating the average stream-wise flow velocity field across the river channel. The data were then additionally processed in MATLAB 2019b, filling data gaps, removing erroneous outlier data, and calculating total discharge. Both the raw flow velocity (WinRiver-exported) data and the processed flow velocity and discharge data are included in this dataset.\n\nDepth profiles of suspended sediments were collected in August 2017, August 2018, and May 2019 at both sites. Only surface sediment samples were collected in February 2018. Sediment samples were collected at various depths using a modified Van Dorn style depth sampler while the boat was drifting with the flow. Samples were transferred into 10 L sterile polyethylene bags, ensuring complete transfer of all sediment particles. The bags were weighed and the samples filtered within 24h using 0.2μm polyethersulfone (PES) membrane and freeze-dried back in the lab. Particle size distributions of dried samples were measured using laser diffractometry. The organic carbon concentration (as weight %) was measured using coupled elemental analysis - isotope ratio mass spectrometry (EA-IRMS) after carbonate removal using liquid HCl.\n\nAll methods are described in detail in the supporting documentation.","locations":["POLYGON((95.187 16.943, 95.187 18.875, 97.647 18.875, 97.647 16.943, 95.187 16.943))"],"orcid":["https://orcid.org/0000-0002-4027-3965","https://orcid.org/0000-0003-3540-3558","https://orcid.org/0000-0001-8889-3410","https://orcid.org/0000-0003-3907-443X","https://orcid.org/0000-0002-0499-3332"],"organisation":["University of Cambridge","Durham University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/86f17d61-141f-4500-9aa5-26a82aef0b33","10.5285/86f17d61-141f-4500-9aa5-26a82aef0b33"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge","Durham University"],"ror":["https://ror.org/04xw4m193","https://ror.org/013meh722","https://ror.org/01v29qb04"],"state":"published","title":"Flow velocity, discharge, and suspended sediment compositions of the Irrawaddy and Salween Rivers, 2017-2019","topic":["0/Environmental survey/","0/Water quality/","0/Hydrology/","0/Modelling/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains water flow velocity, discharge, and suspended sediment compositions of the Irrawaddy (Ayeyarwady) River at Pyay, Myanmar\nand the Salween (Thanlwin) River at Hpa-An, Myanmar. The suspended sediment samples and the hydrological data were collected..."},{"publicationDate":"2018-01-24T00:00:00.000+00:00","authorAffiliation":["University of Cambridge","University of Exeter"],"authorGivenName":["F.M.","B."],"authorFamilyName":["Jiggins","Longdon"],"authorFullName":["Jiggins, F.M.","Longdon, B."],"authorOrcid":["https://orcid.org/0000-0001-7470-8157","https://orcid.org/0000-0001-6936-1697"],"authorRor":["https://ror.org/013meh722","https://ror.org/03yghzc09"],"catalogue":"eidc","description":"The resource consists of genome sequence data for the Drosophila C virus that has been serially passaged through different species of Drosophila in the laboratory.  The genomes were sequenced and aligned to the reference genome. The frequency of variants at both biallelic and triallelic sites was then calculated. We also generated a phylogeny of the species involved using published data. This data was generated to understand how viruses adapt to new host species by Francis Jiggins and his co workers. The work was carried out between July 2016 and September 2017 and was funded by NERC under award reference NE/L004232/1","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/L004232/1"],"identifier":"4434a27d-5288-4f2e-88ac-4b1372e4d073","incomingCitationCount":2,"givenName":["Francis","F.M.","B."],"familyName":["Jiggins","Longdon"],"fullName":["Jiggins, F.","Jiggins, F.M.","Longdon, B."],"keyword":["drosophila","DCV","Drosophila C virus","disease emergence","host shift","evolution","disease","virus"],"keywordsOther":["drosophila","DCV","Drosophila C virus","disease emergence","host shift","evolution","disease","virus"],"licence":"Open government licence","lineage":"Each species of Drosophila was infected by dipping a needle in virus suspension. After 3 days the fly was then homogenized and the process repeated for 8-10 passages. At the end of this process, Ribonucleic acid (RNA) was extracted, the viral genome amplified by Polymerase chain reaction (PCR) and Nextera libraries constructed. These were sequenced on n Illumina sequencer, the sequences quality trimmed and aligned to the reference genome to generate the BAM file in this dataset. We then called variants to generate the allele frequency CSV files. Full details of these steps are provided in the supporting documentation. NB: these data are not adequately described in that there are no column descriptions for the csv files.\n","orcid":["https://orcid.org/0000-0001-7470-8157","https://orcid.org/0000-0001-6936-1697"],"organisation":["University of Cambridge","University of Exeter","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/4434a27d-5288-4f2e-88ac-4b1372e4d073","10.5285/4434a27d-5288-4f2e-88ac-4b1372e4d073"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/03yghzc09","https://ror.org/04xw4m193"],"state":"published","title":"Drosophila C virus genomes, Cambridge (2017)","version":1.0,"view":["public","danor"],"shortenedDescription":"The resource consists of genome sequence data for the Drosophila C virus that has been serially passaged through different species of Drosophila in the laboratory.  The genomes were sequenced and aligned to the reference genome. The frequency of variants at both biallelic..."},{"publicationDate":"2016-02-29T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["B.R.","I.","T."],"authorFamilyName":["Evans","Möller","Spencer"],"authorFullName":["Evans, B.R.","Möller, I.","Spencer, T."],"authorRor":["https://ror.org/013meh722"],"catalogue":"eidc","description":"The dataset details global positioning system (GPS) locations recorded for instruments and locations of interest associated with equipment installed for the monitoring of wave energy, surface elevation changes and sedimentation at five UK saltmarsh sites. Two of the sites were in Morecambe Bay, North West England and three of the sites were in Essex, South East England, each of these sites consisted of a salt marsh area and adjacent mudflat area. Rod Sedimentation-Erosion Tables (rSETs) were installed at different distances from the vegetated margin. Three rSETs were deployed for each Essex site and four for the Morecambe sites. rSET benchmarks were installed with associated marker horizons to evaluate surface elevation changes and surface accretion respectively. Shore-normal transects of pressure transducers (PTs) were installed to monitor wave energy transformation across the marsh and mudflat surfaces. The locations and elevations of the equipment is necessary to make use of the associated datasets \"Coastal Biodiversity and Ecosystem Service Sustainability (CBESS) wave monitoring over saltmarsh and mudflat habitats\" and \"Coastal Biodiversity and Ecosystem Service Sustainability (CBESS) sedimentation and erosion monitoring over saltmarsh and mudflat habitats\". \n\nThis data was collected as part of Coastal Biodiversity and Ecosystem Service Sustainability (CBESS): NE/J015644/1. The project was funded with support from the Biodiversity and Ecosystem Service Sustainability (BESS) programme. BESS is a six-year programme (2011-2017) funded by the UK Natural Environment Research Council (NERC) and the Biotechnology and Biological Sciences Research Council (BBSRC) as part of the UK's Living with Environmental Change (LWEC) programme.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J015644/1"],"identifier":"adf702a1-d154-45b5-9c31-4f6acf5836f1","incomingCitationCount":0,"givenName":["Tom","B.R.","I.","T."],"familyName":["Spencer","Evans","Möller"],"fullName":["Spencer, T.","Evans, B.R.","Möller, I."],"keyword":["Essex","Morecambe Bay","United Kingdom","CBESS","BESS","surface elevation","geopositioning","dGPS","GPS","GNSS","geolocation","salt marsh","mudflat"],"keywordsPlace":["Essex","Morecambe Bay","United Kingdom"],"keywordsProject":["CBESS","BESS"],"keywordsOther":["surface elevation","geopositioning","dGPS","GPS","GNSS","geolocation","CBESS","BESS","salt marsh","mudflat"],"licence":"Open government licence","lineage":"GPS locations and elevations were recorded using a Leica GS08 GNSS system with n-board 3D coordinate quality check of 50mm (above which points were rejected). Surveys were conducted upon installation of the monitoring equipment being surveyed. Data were recorded in OSGB1936(2), Northings, Eastings and elevation relative to Ordnance Datum Newlyn. No subsequent processing has been undertaken.","locations":["POLYGON((-3 51.5, -3 54.25, 1 54.25, 1 51.5, -3 51.5))"],"organisation":["University of Cambridge","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/adf702a1-d154-45b5-9c31-4f6acf5836f1","10.5285/adf702a1-d154-45b5-9c31-4f6acf5836f1"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","title":"Coastal Biodiversity and Ecosystem Service Sustainability (CBESS) global positioning system (GPS) locations for instruments and features associated with wave monitoring and sedimentation-erosion table installations in saltmarsh and mudflat habitats","version":1.0,"view":["public","hajd"],"shortenedDescription":"The dataset details global positioning system (GPS) locations recorded for instruments and locations of interest associated with equipment installed for the monitoring of wave energy, surface elevation changes and sedimentation at five UK saltmarsh sites. Two of the..."},{"publicationDate":"2017-10-20T00:00:00.000+00:00","authorAffiliation":["University of Cambridge","University of Zurich","University of Jyväskylä"],"authorGivenName":["R","H","J"],"authorFamilyName":["Thorogood","Kokko","Mappes"],"authorFullName":["Thorogood, R.","Kokko, H.","Mappes, J."],"authorOrcid":["https://orcid.org/0000-0001-5010-2177","https://orcid.org/0000-0002-5772-4881","https://orcid.org/0000-0002-1117-5629"],"authorRor":["https://ror.org/013meh722","https://ror.org/02crff812","https://ror.org/05n3dz165"],"catalogue":"eidc","description":"The data set describes foraging decisions by great tits (Parus major), held in temporary captivity.  Data were collected from birds caught from forest at the University of Jyväskylä Research Station, Konnevesi (62°37.7'N 026°17'E), Finland, and were collected during the winter of 2013-2014.  Birds were presented with (1) two different coloured plastic cups, or (2) two different artificial prey (almond pieces inside a paper packet and printed with a black and white symbol). One symbol was made bitter-tasting by soaking the almond piece in chloroquine, and learning behaviour was recorded over three trials.  Half of the birds in both experiments were presented videos of a demonstrator great tit, to provide social information about prey characteristics and unpalatability.  Data were collected to test hypotheses about the evolutionary consequences of social information use by predators as part of a NERC-funded Independent Research Fellowship.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/K00929X/1"],"identifier":"db55406b-c9a1-4a9e-88c2-2abbcb4bcad3","incomingCitationCount":2,"givenName":["Rose","R","H","J"],"familyName":["Thorogood","Kokko","Mappes"],"fullName":["Thorogood, R.","Kokko, H.","Mappes, J."],"keyword":["Konnevesi","Animal behaviour","Evolutionary ecology","Wild bird","foraging","prey defence","aposematism","Great tit","Parus major","animal behaviour","bird","evolution"],"keywordsPlace":["Konnevesi"],"keywordsTheme":["Animal behaviour","Evolutionary ecology"],"keywordsOther":["Wild bird","foraging","prey defence","aposematism","Great tit","Parus major","animal behaviour","bird","evolution"],"licence":"Open government licence","lineage":"Data on foraging decisions of wild great tits (Paris major), held in captivity temporarily, were collected between 17th October 2013 - 24th January 2014 in central Finland.  Data were generated during two procedures, with 14 out of 56 birds used to generate both parts of the dataset. Half of the birds were presented with video playback before the foraging test to provide social information about food options. ","locations":["POLYGON((18.584 58.655, 18.584 65.608, 32.416 65.608, 32.416 58.655, 18.584 58.655))"],"orcid":["https://orcid.org/0000-0001-5010-2177","https://orcid.org/0000-0002-5772-4881","https://orcid.org/0000-0002-1117-5629"],"organisation":["University of Cambridge","University of Zurich","University of Jyväskylä","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/db55406b-c9a1-4a9e-88c2-2abbcb4bcad3","10.5285/db55406b-c9a1-4a9e-88c2-2abbcb4bcad3"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/02crff812","https://ror.org/05n3dz165","https://ror.org/04xw4m193"],"state":"published","title":"Foraging behaviour of Parus major held in temporary captivity","topic":["0/Animal behaviour/","0/Evolutionary ecology/"],"version":1.0,"view":["public","tinzha"],"shortenedDescription":"The data set describes foraging decisions by great tits (Parus major), held in temporary captivity.  Data were collected from birds caught from forest at the University of Jyväskylä Research Station, Konnevesi (62°37.7'N 026°17'E), Finland, and were collected during..."},{"publicationDate":"2021-11-29T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["K.E.","J.J.","J.A."],"authorFamilyName":["Criswell","Head","Gillis"],"authorFullName":["Criswell, K.E.","Head, J.J.","Gillis, J.A."],"authorOrcid":["https://orcid.org/0000-0002-4004-0192","https://orcid.org/0000-0002-2237-6901","https://orcid.org/0000-0003-2062-3777"],"catalogue":"eidc","description":"CT scans of adult little skates (Leucoraja erinacea). These scans consist of series of tiff images that can be imported into CT segmenting software to reconstruct their shape in three dimensions. Supplemental files include CT scanning parameters, landmark coordinates for each vertebra in each skate, up to vertebra 70, as well as an R script with code for analysing vertebral shape using morphometrics and segmented linear regression tests.\n\nComputed tomography scans of three adult little skates were obtained in order to quantitatively study vertebral column morphology and regionalization. The skate fins were removed to facilitate shipping to our scanning facility, and so the scans include only the head, gill basket, and axial column. The specimens are now housed in the University of Cambridge Museum of Zoology (specimen identification numbers 2021.50.1, 20201.50.2, and 2021.50.3). ","documentType":"GEMINI_DOCUMENT","identifier":"9d7810c7-92af-47b2-81ec-365aafc39691","incomingCitationCount":0,"givenName":["K.E.","J.J.","J.A."],"familyName":["Criswell","Head","Gillis"],"fullName":["Criswell, K.E.","Head, J.J.","Gillis, J.A."],"keyword":["Biodiversity","Evolutionary ecology","Chondrichthyan","Leucoraja erinacea","Little skate","anatomy","fish","morphology"],"keywordsTheme":["Biodiversity","Evolutionary ecology"],"keywordsOther":["Chondrichthyan","Leucoraja erinacea","Little skate","anatomy","fish","morphology"],"licence":"Open government licence","lineage":"The skates were collected by the Marine Biological Laboratory in Woods Hole, MA, USA, in the waters off the Massachusetts coast in the summer of 2019. The specimens were fixed in 4% paraformaldehyde for one week, rinsed in water, and stored in 70% ethanol. Computed tomography scans were obtained at the Cambridge Biotomography Centre by Keturah Smithson, a trained CT technician, using a Nikon  XTEK H 225 ST MicroCT scanner. Post-processing to optimise CT reconstructions and minimise scan artefacts was performed in Nikon’s CT-Pro program, and scan reslicing was performed using VG STUDIOMAX (Volume Graphics).","orcid":["https://orcid.org/0000-0002-4004-0192","https://orcid.org/0000-0002-2237-6901","https://orcid.org/0000-0003-2062-3777"],"organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9d7810c7-92af-47b2-81ec-365aafc39691","10.5285/9d7810c7-92af-47b2-81ec-365aafc39691"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Morphological and morphometric data on the axial skeleton of the little skate, Leucoraja erinacea","topic":["0/Biodiversity/","0/Evolutionary ecology/"],"version":1.0,"view":["public","jualob"],"shortenedDescription":"CT scans of adult little skates (Leucoraja erinacea). These scans consist of series of tiff images that can be imported into CT segmenting software to reconstruct their shape in three dimensions. Supplemental files include CT scanning parameters, landmark coordinates..."},{"publicationDate":"2024-04-02T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["E."],"authorFamilyName":["Stevenson"],"authorFullName":["Stevenson, E."],"authorOrcid":["https://orcid.org/0000-0003-3907-443X"],"authorRor":["https://ror.org/013meh722"],"catalogue":"eidc","description":"This dataset presents both isotopic and elemental data for a series of cation exchange experiments between mineral water, montmorillonite clay and seawater. These were a series of in-house experiments to determine isotopic fractionation and elemental distribution coefficients (if any) as the exchange pool switched from mineral water rich to seawater rich.  ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/T007214/1"],"identifier":"8db593bf-cdc9-4256-ac28-e002814d636d","incomingCitationCount":0,"givenName":["E."],"familyName":["Stevenson"],"fullName":["Stevenson, E."],"keyword":["isotope","stable isotope","magnesium"," exchange","estuary","strontium","river"],"keywordsOther":["isotope","stable isotope","magnesium"," exchange","estuary","strontium","river"],"licence":"Open government licence","lineage":"In-house experiments were conducted in 50mL centrifuge tubes. All reagents, reactants and products were analysed for elemental and isotopic compositions as described in the ‘Read_me’ of the csv file. Data were generated using an Agilent ICP-OES 1500 or a Thermo MC-ICP-MS Neptune. All data were calibrated and measured against in house and certified standard reference material. ","locations":["POLYGON((0.097 52.194, 0.097 52.218, 0.134 52.218, 0.134 52.194, 0.097 52.194))"],"orcid":["https://orcid.org/0000-0003-3907-443X"],"organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8db593bf-cdc9-4256-ac28-e002814d636d","10.5285/8db593bf-cdc9-4256-ac28-e002814d636d"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","title":"Elemental and isotopic data for timed exchange experiments between clay, mineral water and seawater","version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset presents both isotopic and elemental data for a series of cation exchange experiments between mineral water, montmorillonite clay and seawater. These were a series of in-house experiments to determine isotopic fractionation and elemental distribution coefficients..."},{"publicationDate":"2017-09-19T00:00:00.000+00:00","authorAffiliation":["University of Cambridge","Imperial College London"],"authorGivenName":["M.H.","R.M.","E.C.","D.A."],"authorFamilyName":["Nunes","Ewers","Turner","Coomes"],"authorFullName":["Nunes, M.H.","Ewers, R.M.","Turner, E.C.","Coomes, D.A."],"authorRor":["https://ror.org/013meh722","https://ror.org/041kmwe10"],"catalogue":"eidc","description":"This data set provides above-ground carbon density derived from LiDAR data over oil palm plantations in the Stability of Altered Forest Ecosystems (SAFE) project site located in Sabah, Malaysian Borneo in 2014.  This includes the number of trees in plots and the average forest canopy per hectare at different heights.  Data were collected during a project which was included in the NERC Human-modified tropical forest (HMTF) Programme.","documentType":"GEMINI_DOCUMENT","identifier":"6e18121c-2184-49df-a852-f3227c28d82f","incomingCitationCount":0,"givenName":["Matheus","M.H.","R.M.","E.C.","D.A."],"familyName":["Nunes","Ewers","Turner","Coomes"],"fullName":["Nunes, M.","Nunes, M.H.","Ewers, R.M.","Turner, E.C.","Coomes, D.A."],"keyword":["Malaysian Borneo","Sabah","Stability of Altered Forest Ecosystems (SAFE)","Human-modified tropical forest (HMTF)","forest density ","canopy density ","tropical forest","tree"],"keywordsPlace":["Malaysian Borneo","Sabah"],"keywordsProject":["Stability of Altered Forest Ecosystems (SAFE)","Human-modified tropical forest (HMTF)"],"keywordsOther":["forest density ","canopy density ","tropical forest","tree"],"licence":"Open government licence","lineage":"The work was carried out in the oil palm plantations within the Stability of Altered Forest Ecosystem (SAFE) Project, located within lowland dipterocarp forest regions of East Sabah in Malaysian Borneo.  Airborne LiDAR data were acquired on 5 November 2014 using a Leica LiDAR50-II flown at 1850 m altitude on a Dornier 228-201 travelling at 135 knots. The LiDAR sensor emitted pulses at 83.1 Hz with a field of view of 12.0°, and a footprint of about 40 cm diameter. The average pulse density was 7.3/m2. The Leica LiDAR50-II sensor records full waveform LiDAR, but for the purposes of this study the data were discretised, with up to four returns recorded per pulse.  The LiDAR data were pre-processed by NERC's Data Analysis Node and delivered in standard LAS format. All further processing was undertaken using LAStools (Rapidlasso GmbH, LAStools). Points were classified as ground and non-ground, and a digital elevation model (DEM) was fitted to the ground returns, producing a raster of 1 m resolution. The DEM elevations were subtracted from elevations of all non-ground returns to produce a normalised point cloud, and a canopy height model (CHM) was constructed from this on a 0.5 m raster by averaging the first returns. Finally, holes in the raster were filled by averaging neighbouring cells.  See supporting documentation for further information.","locations":["POLYGON((117.42 4.583, 117.42 4.774, 117.719 4.774, 117.719 4.583, 117.42 4.583))"],"organisation":["University of Cambridge","Imperial College London","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/6e18121c-2184-49df-a852-f3227c28d82f","10.5285/6e18121c-2184-49df-a852-f3227c28d82f"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/041kmwe10","https://ror.org/04xw4m193"],"state":"published","title":"Above-ground carbon density derived from LiDAR data over oil palm plantations in Malaysian Borneo, 2014 ","version":1.0,"view":["public","clamw"],"shortenedDescription":"This data set provides above-ground carbon density derived from LiDAR data over oil palm plantations in the Stability of Altered Forest Ecosystems (SAFE) project site located in Sabah, Malaysian Borneo in 2014.  This includes the number of trees in plots and the average..."},{"publicationDate":"2020-02-25T00:00:00.000+00:00","authorAffiliation":["Nord University","University of Cambridge","SMART Research Institute"],"authorGivenName":["A.E.","E.C.","S.H.","A.D."],"authorFamilyName":["Eycott","Turner","Luke","Advento"],"authorFullName":["Eycott, A.E.","Turner, E.C.","Luke, S.H.","Advento, A.D."],"authorOrcid":["https://orcid.org/0000-0002-8609-1091","https://orcid.org/0000-0003-2715-2234","https://orcid.org/0000-0002-8335-5960"],"catalogue":"eidc","description":"Data comprise counts of damage to palm fronds in mature oil palm (2013-2015), and mature and replanted oil palm (2016-2017) plots as part of a large-scale ecological experiment programme (the Biodiversity and Ecosystem Function in Tropical Agriculture project, established in 2013). Herbivory was measured 17 times in total (every 3-4 months) between April 2013 and August 2017. Eighteen plots were examined across three estates - plots in Ujung Tanjung and Kandista estates were planted in 1987 to 1992 and are mature or over-mature oil palm, while Libo plots (2016-2017 data only) were replanted in 2014. Plots were organised in triplets; in Ujung Tanjung and Kandista, for each triplet one plot was assigned to each of three vegetation treatments: Reduced vegetation cover, normal vegetation management and enhanced vegetation cover. \n\nThe data contain damage estimated in three ways: by eye for the whole crown, by eye for the 17th frond, and by image processing for 20 leaflets of the 17th frond. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":[" NE/P00458X/1"],"identifier":"c2fbd22c-1ce9-4435-b4b0-e333addef346","incomingCitationCount":0,"givenName":["A.","A.E.","E.C.","S.H.","A.D."],"familyName":["Eycott","Turner","Luke","Advento"],"fullName":["Eycott, A.","Eycott, A.E.","Turner, E.C.","Luke, S.H.","Advento, A.D."],"keyword":["Indonesia","Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA)","Environmental risk","oil palm"],"keywordsPlace":["Indonesia"],"keywordsProject":["Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA)"],"keywordsTheme":["Environmental risk"],"keywordsOther":["oil palm"],"licence":"Open government licence","lineage":"At each recording session, three palms were selected at random from within experimental plots. Random palm selection was done using the rnd function in excel before visiting the field, as each palm in the experimental plots has a unique identifying tag. In the replanted stands where palms are not tagged, the randomisation was done by counting steps from the corner of the plot, again using the rnd function in excel.\n\nFirst the damage to the crown form herbivory was estimated visually from the ground. Then, counting from the youngest fully-opened frond, the 17th frond in the crown of the palm was cut and caught in a white cloth. Frond 17 represents a middle-aged frond (aged between 8.5 and 9 months) in mature palms and is commonly used by the oil palm industry as a standard to measure herbivory and herbivore load. The damage to the frond (in percent) was estimated visually. Then twenty paired leaflets, spaced evenly along the frond, were cut, placed flat on a white board and photographed (using a Nikon D90). Photography and visual damage estimates were always carried out by the same person, from the same angle (bottom left), to reduce sampling bias.\n\nPhotographs were pre-processed to remove noise and converted to binary images in Microsoft Paint. The total leaflet area was then measured in Fiji (https://fiji.sc/). A second image was prepared in Microsoft Paint, with all herbivory damage 'filled in', such that the leaflets appeared to be intact. Where leaflet tips were missing, a conservative estimate for the leaflet tip was drawn in, based on the length of neighbouring leaflets. This second image was measured in Fiji in the same way and the percent of the leaflet area consumed by herbivores was calculated. \n\nBasic data checks were carried out (checks for impossible values, such as an increase in leaf area after processing or extreme discrepancy between visual estimate and image processing values).","locations":["POLYGON((100.003 0.516, 100.003 1.812, 101.662 1.812, 101.662 0.516, 100.003 0.516))"],"orcid":["https://orcid.org/0000-0002-8609-1091","https://orcid.org/0000-0003-2715-2234","https://orcid.org/0000-0002-8335-5960"],"organisation":["Nord University","University of Cambridge","SMART Research Institute","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c2fbd22c-1ce9-4435-b4b0-e333addef346","10.5285/c2fbd22c-1ce9-4435-b4b0-e333addef346"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/04xw4m193"],"state":"published","supplementalName":["Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) Programme website"],"title":"Palm frond damage from herbivory in Biodiversity and Ecosystem Function in Tropical Agriculture (BEFTA) plots, Kandista and Ujun Tanjung estates, Indonesia","topic":["0/Environmental risk/"],"version":1.0,"view":["public","jgar"],"shortenedDescription":"Data comprise counts of damage to palm fronds in mature oil palm (2013-2015), and mature and replanted oil palm (2016-2017) plots as part of a large-scale ecological experiment programme (the Biodiversity and Ecosystem Function in Tropical Agriculture project, established..."},{"publicationDate":"2024-07-03T00:00:00.000+00:00","authorAffiliation":["University of Cambridge","University of St Andrews"],"authorGivenName":["A.C.G.","L.","E.T."],"authorFamilyName":["Knight","Bridgestock","Tipper"],"authorFullName":["Knight, A.C.G.","Bridgestock, L.","Tipper, E.T."],"authorOrcid":["https://orcid.org/0000-0002-3206-3060","https://orcid.org/0000-0001-7636-6090","https://orcid.org/0000-0003-3540-3558"],"authorRor":["https://ror.org/013meh722","https://ror.org/02wn5qz54"],"catalogue":"eidc","description":"This dataset contains barium concentration and stable isotope ratio measurements of the adsorbed and dissolved phases associated with batch laboratory adsorption-desorption reactions using common environmental mineral adsorbents (clay minerals: kaolinite & montmorillonite, iron-oxyhydroxides: goethite and ferrihydrite) and surface waters (river water, groundwater and seawater).  The experiments systematically changed several variables (reaction duration, adsorbent concentration, water type and the pre-experiment adsorbent cleaning procedure).\n\nBarium concentration and stable isotope ratio measurements of the adsorbed and dissolved phases from two Himalayan rivers (Saptakoshi River and Sunkoshi River) are also provided.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S007164/1"],"identifier":"cfa9abd4-1200-47b6-9553-aa1b6e4d9ffd","incomingCitationCount":0,"givenName":["A.C.G.","L.","E.T."],"familyName":["Knight","Bridgestock","Tipper"],"fullName":["Knight, A.C.G.","Bridgestock, L.","Tipper, E.T."],"keyword":["Himalayas","Nepal","Saptakoshi River","Sunkoshi River","Hydrology","Environmental survey","ion-exchange","isotope experiments","barium","barium isotopes","adsorption","desorption","clay","clay minerals","aqueous geochemistry","iron-oxyhydroxides"],"keywordsPlace":["Himalayas","Nepal","Saptakoshi River","Sunkoshi River"],"keywordsTheme":["Hydrology","Environmental survey"],"keywordsOther":["ion-exchange","isotope experiments","barium","barium isotopes","adsorption","desorption","clay","clay minerals","aqueous geochemistry","iron-oxyhydroxides"],"licence":"Open government licence","lineage":"All experiments and analyses were performed in the Department of Earth Sciences at the University of Cambridge.\n\nBarium concentrations were determined in two independent ways:\n1.    Inductively coupled plasma optical emission spectroscopy (ICP-OES) on an Agilent 5100.\n2.\tIsotope dilution via thermal ionisation mass spectrometer (TIMS) on a Thermo Fischer Scientific Triton Plus.\n\nBarium isotope ratios were measured via TIMS on a Thermo Fischer Scientific Triton Plus. Barium was separated from other elements via column elution chromatography (AG50W-X8 resin). A double-spike procedure was used to correct for mass-dependent isotope fractionation. The NIST-3104a and NBS-127 standards were used to quantify the uncertainty associated with isotope ratio measurements (0.03 ‰).\n\nField samples of river water and sediment were collected from the surface of the water column from stationary sampling locations (Chatara and Khurkot) as part of the Perturbations of Earth Surface Processes by Large Earthquakes (PRESSurE) Project:  https://www.gfz-potsdam.de/en/section/geomorphology/projects/pressure/.  The water and sediment samples were immediately separated following collection via filtration through 0.22-micrometre polyethersulfone (PES) membrane filters. Further information on the field samples can be found at: https://doi.org/10.5880/fidgeo.2024.008. The desorption of barium from the surfaces of sediment and the laboratory adsorbents was achieved using repeated additions of 1.0 mol/L ammonium chloride (Puratronic™, 99.999% (metals basis), Thermo Scientific Chemicals).","locations":["POLYGON((84.99 26.647, 84.99 28.517, 88.321 28.517, 88.321 26.647, 84.99 26.647))"],"orcid":["https://orcid.org/0000-0002-3206-3060","https://orcid.org/0000-0001-7636-6090","https://orcid.org/0000-0003-3540-3558"],"organisation":["University of Cambridge","University of St Andrews","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/cfa9abd4-1200-47b6-9553-aa1b6e4d9ffd","10.5285/cfa9abd4-1200-47b6-9553-aa1b6e4d9ffd"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/02wn5qz54","https://ror.org/04xw4m193"],"state":"published","title":"Barium concentration and stable isotope ratio measurements of the dissolved and adsorbed phases from laboratory batch experiments and Himalayan river samples from 2015-2016","topic":["0/Hydrology/","0/Environmental survey/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"This dataset contains barium concentration and stable isotope ratio measurements of the adsorbed and dissolved phases associated with batch laboratory adsorption-desorption reactions using common environmental mineral adsorbents (clay minerals: kaolinite & montmorillonite,..."},{"publicationDate":"2020-11-20T00:00:00.000+00:00","authorAffiliation":["University of Cambridge","Arizona State University"],"authorGivenName":["D.A.","G.P.","M.H. "],"authorFamilyName":["Coomes","Asner","Nunes"],"authorFullName":["Coomes, D.A.","Asner, G.P.","Nunes, M.H."],"authorOrcid":["https://orcid.org/0000-0002-8261-2582","https://orcid.org/0000-0001-7893-6421"],"authorRor":["https://ror.org/013meh722","https://ror.org/03efmqc40"],"catalogue":"eidc","description":"The dataset contains top-of-canopy height before and after the 2015-15 El Niño Southern Oscillation (ENSO) event across a human-modified tropical landscape in Malaysian Borneo. The derived changes in top-of-canopy height from 36,655 repeated measurements were investigated. Data were obtained from airborne LiDAR in November 2014 and April 2016. Topographic Position Index and distance from oil palm plantations are also included to investigate the effects of topography and fragmentation on the canopy height change during the ENSO event. Each observation (pixel) contains the coordinates to assess the spatial effects on canopy changes.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"534838c8-0e1f-4a04-a837-2e19a4e93797","incomingCitationCount":0,"givenName":["D.A.","G.P.","M.H. ","Matheus"],"familyName":["Coomes","Asner","Nunes"],"fullName":["Coomes, D.A.","Asner, G.P.","Nunes, M.H.","Nunes, M."],"keyword":["Malaysia","LiDAR","Top-of-canopy height","canopy dynamics","topography","forest fragmentation"," El Niño","climate change","forest"],"keywordsPlace":["Malaysia"],"keywordsOther":["LiDAR","Top-of-canopy height","canopy dynamics","topography","forest fragmentation"," El Niño","climate change","forest"],"licence":"Open government licence","lineage":"All data were generated by the authors. LiDAR data were generated and checked to ensure precision from repeated canopy height measurements. We also ensured that differences in LiDAR sensors did not affect the canopy height change observations and, if necessary, excluded from analysis. Distance of measurements from oil palm plantations were determined using 2 m resolution satellite images. All data were checked to ensure reported values were within the natural ranges of forests canopy height change. All calculations were checked for errors before data was accepted.","locations":["POLYGON((116 4.136, 116 4.766, 117 4.766, 117 4.136, 116 4.136))"],"orcid":["https://orcid.org/0000-0002-8261-2582","https://orcid.org/0000-0001-7893-6421"],"organisation":["University of Cambridge","Arizona State University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/534838c8-0e1f-4a04-a837-2e19a4e93797","10.5285/534838c8-0e1f-4a04-a837-2e19a4e93797"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/03efmqc40","https://ror.org/04xw4m193"],"state":"published","title":"Canopy height measured by LiDAR during the 2015-16 El Niño Southern Oscillation (ENSO) event in Malaysian Borneo","version":1.0,"view":["public","clwe"],"shortenedDescription":"The dataset contains top-of-canopy height before and after the 2015-15 El Niño Southern Oscillation (ENSO) event across a human-modified tropical landscape in Malaysian Borneo. The derived changes in top-of-canopy height from 36,655 repeated measurements were investigated...."},{"publicationDate":"2016-02-29T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["B.R.","I.","Tom"],"authorFamilyName":["Evans","Möller","Spencer"],"authorFullName":["Evans, B.R.","Möller, I.","Spencer, T."],"authorRor":["https://ror.org/013meh722"],"catalogue":"eidc","description":"The dataset contains estimates of the projected area of vegetation derived from the analysis of side-on photographs through the vegetation canopy and recorded for survey quadrats at six UK saltmarsh sites. Three of the sites were in Morecambe Bay, North West England and three of the sites were in Essex, South East England, each of these sites consisted of a saltmarsh area and adjacent mudflat area. Each site comprised 22 quadrats in the vegetated area of salt marsh. A calibrated camera was used to photograph through a 600 x 200mm section of vegetation against a red background. Calibrated images were then classified into vegetation and background classes and parameters of vegetation density in the horizontal were computed.\n\nThis data was collected as part of Coastal Biodiversity and Ecosystem Service Sustainability (CBESS): NE/J015644/1. The project was funded with support from the Biodiversity and Ecosystem Service Sustainability (BESS) programme - is a six-year programme (2011-2017) funded by the UK Natural Environment Research Council (NERC) and the Biotechnology and Biological Sciences Research Council (BBSRC) as part of the UK's Living with Environmental Change (LWEC) programme.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J015644/1"],"identifier":"936e04d0-c8ae-47ec-a858-518a77667c70","incomingCitationCount":0,"givenName":["Tom","B.R.","I."],"familyName":["Spencer","Evans","Möller"],"fullName":["Spencer, T.","Evans, B.R.","Möller, I."],"keyword":["Essex","Morecambe Bay","United Kingdom","CBESS","BESS","vegetation density","projected area","non-destructive","image analysis","biovolume ","biomass","vegetation"],"keywordsPlace":["Essex","Morecambe Bay","United Kingdom"],"keywordsProject":["CBESS","BESS"],"keywordsOther":["vegetation density","projected area","non-destructive","image analysis","biovolume ","biomass","vegetation"],"licence":"Open government licence","lineage":"The method followed that of Möller (2006). Side-on photography was undertaken in the field using a frame to ensure consistent geometry and a calibrated Fuji Finepix XP30 camera. Photographs were rectified using Matlab and exported in TIFF format to Erdas Imagine for classification. A 20-class unsupervised classification was performed followed by manual attribution of classes into \"background\" and vegetation\". The binary image files were then analysed in Matlab based on pixel sizes derived from the camera calibration procedure against a chequerboard background. Further methodological details are contained in the supporting document.","locations":["POLYGON((-3 51.5, -3 54.25, 1 54.25, 1 51.5, -3 51.5))"],"organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/936e04d0-c8ae-47ec-a858-518a77667c70","10.5285/936e04d0-c8ae-47ec-a858-518a77667c70"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Möller, I. (2006). Quantifying saltmarsh vegetation and its effect on wave height dissipation: Results from a UK East coast saltmarsh. Estuarine, Coastal and Shelf Science, 69(3-4), 337-351"],"supplementalName":["Information about the methods used to collect data"],"title":"Coastal Biodiversity and Ecosystem Service Sustainability (CBESS) projected area of vegetation in saltmarsh habitats","version":1.0,"view":["public","hajd"],"shortenedDescription":"The dataset contains estimates of the projected area of vegetation derived from the analysis of side-on photographs through the vegetation canopy and recorded for survey quadrats at six UK saltmarsh sites. Three of the sites were in Morecambe Bay, North West England..."},{"publicationDate":"2023-06-12T00:00:00.000+00:00","authorAffiliation":["Universiti Putra Malaysia","University of Cambridge","Wild Asia","IPB University, Bogor","Sinar Mas Agro Resources and Technology Research Institute","UK Centre for Ecology & Hydrology","IPB University","University of Oxford","Nottingham University"],"authorGivenName":["B.","W. M.","M.F.","J.","I.","D.","J-P.","P.","K.","A.J.","J.A.","S.H.","M.","V.J.","E.C."],"authorFamilyName":["Azhar","Wan Zaki","Harianja","Stone","Barrock","Buchori","Caliman","Drewer","Hidayat","Howlett","Siti Zulaikah","Jones","Luke","Naim","Popkin","Reiss-Woolever","Turner"],"authorFullName":["Azhar, B.","Wan Zaki, W.M.","Harianja, M.F.","Stone, J.","Barrock, I.","Buchori, D.","Caliman, J.","Drewer, J.","Hidayat, P.","Howlett, K.","Siti Zulaikah, A.J.","Jones, J.A.","Luke, S.H.","Naim, M.","Popkin, M.","Reiss-Woolever, V.J.","Turner, E.C."],"authorOrcid":["https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-1020-9161","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2715-2234"],"authorRor":["https://ror.org/02e91jd64","https://ror.org/013meh722","https://ror.org/05smgpd89","https://ror.org/00pggkr55","https://ror.org/052gg0110","https://ror.org/01ee9ar58"],"catalogue":"eidc","description":"This dataset includes results from social and environmental surveys of 27 oil palm smallholders and farms in Selangor, Malaysia. 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M.","M.F.","J.","I.","D.","J-P.","P.","K.","A.J.","J.A.","S.H.","M.","V.J.","E.C."],"familyName":["Azhar","Wan Zaki","Harianja","Stone","Barrock","Buchori","Caliman","Drewer","Hidayat","Howlett","Siti Zulaikah","Jones","Luke","Naim","Popkin","Reiss-Woolever","Turner"],"fullName":["Azhar, B.","Wan Zaki, W.M.","Harianja, M.F.","Stone, J.","Barrock, I.","Buchori, D.","Caliman, J.","Drewer, J.","Hidayat, P.","Howlett, K.","Siti Zulaikah, A.J.","Jones, J.A.","Luke, S.H.","Naim, M.","Popkin, M.","Reiss-Woolever, V.J.","Turner, E.C."],"keyword":["Selangor","Banting","oil palm","smallholder","environment","soil","vegetation","crop","social"],"keywordsOther":["Selangor","Banting","oil palm","smallholder","environment","soil","vegetation","crop","social"],"licence":"Open government licence","lineage":"Environmental and social data were collected in a series of field campaigns, led by researchers from Universiti Putra Malaysia (UPM) and supported by University of Cambridge. \n\nEnvironmental data collection methods included visual inspection of plots to record cover of different crop types, and using handheld GPS units to record plantation boundaries and size of plantations. At four points distributed across the plantation and separated by 20m, we also made direct measurements of vegetation, palm and soil characteristics. These included field readings of canopy openness using a convex spherical densiometer, direct measures of vegetation height and cover (into categories by eye within a 3m x3m area), and field measures of soil pH and moisture using a Suplong probe. We also scored height, health, % epiphyte cover on the trunk, and level of herbivory by eye on the closest palm to each point. We also measured leaf litter depth.\n\nSocial data were collected through face to face interviews with smallholders, at a time convenient to the smallholders. Ethical permission for interviews were gained from the University of Cambridge Department of Psychology ethics board before work took place, no information was withheld from participants and full written consent was obtained in advance.\n\nData were entered digitally by field teams and returned to the University of Cambridge for quality and error checking, and to ensure a standard format.\n","locations":["POLYGON((101.282 2.387, 101.282 3.038, 101.861 3.038, 101.861 2.387, 101.282 2.387))"],"orcid":["https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-1020-9161","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2715-2234"],"organisation":["Universiti Putra Malaysia","University of Cambridge","Wild Asia","IPB University, Bogor","Sinar Mas Agro Resources and Technology Research Institute","UK Centre for Ecology & Hydrology","IPB University","University of Oxford","Nottingham University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/81b02484-a87e-4a49-baba-678654059091","10.5285/81b02484-a87e-4a49-baba-678654059091"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/02e91jd64","https://ror.org/013meh722","https://ror.org/05smgpd89","https://ror.org/00pggkr55","https://ror.org/052gg0110","https://ror.org/01ee9ar58","https://ror.org/04xw4m193"],"state":"published","title":"Socioecological data from smallholder oil palm plantations in Selangor, Peninsular Malaysia, 2022","version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset includes results from social and environmental surveys of 27 oil palm smallholders and farms in Selangor, Malaysia. Environmental data includes: information on size of plot, crop type and cover, GPS location, vegetation cover, vegetation height, canopy..."},{"publicationDate":"2022-03-08T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["A.B.","A.","J.P.","N.","M.P.","F.M."],"authorFamilyName":["Leitão","Ramesh","Day","Hanna","Devi","Hayes","Jiggins"],"authorFullName":["Leitão, A.B.","Ramesh, A.","Day, J.P.","Hanna, N.","Devi, A.","Hayes, M.P.","Jiggins, F.M."],"authorOrcid":["https://orcid.org/0000-0001-9004-1831","https://orcid.org/0000-0003-0050-3516","https://orcid.org/0000-0001-7470-8157"],"authorRor":["https://ror.org/013meh722"],"catalogue":"eidc","description":"Data consists of gene expression estimates and encapsulation rates in wild caught Drosophila melanogaster larvae following exposure to different treatments. Treatments include injection with wasp homogenate, injection with oil and no injection. Also provided are functional enrichment categories for differentially expressed genes and library generation and read mapping metrics. The data were produced under the grant: NE/P00184X/1 Why does Drosophila vary in susceptibility to parasitoid wasps.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/P00184X/1"],"identifier":"06ea87f3-476d-40fd-acce-e6923e786d48","incomingCitationCount":0,"givenName":["A.B.","A.","J.P.","N.","M.P.","F.M."],"familyName":["Leitão","Ramesh","Day","Hanna","Devi","Hayes","Jiggins"],"fullName":["Leitão, A.B.","Ramesh, A.","Day, J.P.","Hanna, N.","Devi, A.","Hayes, M.P.","Jiggins, F.M."],"keyword":["RNA-sequencing","Drosophila melanogaster","Leptopilina boulardi","parasitoid wasp","differential gene expression","fat body","haemocyte","Evolutionary genetics","insect genomics","genetics","encapsulation","parasite"],"keywordsOther":["RNA-sequencing","Drosophila melanogaster","Leptopilina boulardi","parasitoid wasp","differential gene expression","fat body","haemocyte","Evolutionary genetics","insect genomics","genetics","encapsulation","parasite"],"licence":"Open government licence","lineage":"Drosophila melanogaster larvae obtained from a wild caught population were exposed injected with wasp homogenate, oil or no manipulation was made. Encapsulation rates were measured in each case in the fly larvae. For RNA-sequencing, hemocyte and fat body tissues were isolated from third instar larvae 24 hours post experimental manipulation. RNA was isolated for sequencing. Sequenced reads were trimmed, mapped to the dm6 genome, number of reads mapping to each gene was counted, differential expression tests were applied, and functional enrichment was done.","locations":["POLYGON((-1.464 51.232, -1.464 52.974, 1.768 52.974, 1.768 51.232, -1.464 51.232))"],"orcid":["https://orcid.org/0000-0001-9004-1831","https://orcid.org/0000-0003-0050-3516","https://orcid.org/0000-0001-7470-8157"],"organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/06ea87f3-476d-40fd-acce-e6923e786d48","10.5285/06ea87f3-476d-40fd-acce-e6923e786d48"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","title":"Changes in gene expression and encapsulation in Drosophila melanogaster caused by exposure to parasitoid wasps v2","version":1.0,"view":["public","tinzha"],"shortenedDescription":"Data consists of gene expression estimates and encapsulation rates in wild caught Drosophila melanogaster larvae following exposure to different treatments. Treatments include injection with wasp homogenate, injection with oil and no injection. Also provided are functional..."},{"publicationDate":"2017-06-26T00:00:00.000+00:00","authorAffiliation":["Plant Sciences, University of Cambridge"],"authorGivenName":["D.A.","M.","M.H."],"authorFamilyName":["Coomes","Davey","Nunes"],"authorFullName":["Coomes, D.A.","Davey, M.","Nunes, M.H."],"catalogue":"eidc","description":"The dataset comprises a range of leaf traits, measured from leaf samples collected from trees growing on deep alluvial soils and shallow chalk soils, near Mickleham in Surrey, UK.  Across both sites, leaves were collected from 66 trees, representing six species. The six species common to both sites were: Acer campestre (field maple), Acer pseudoplatanus (sycamore), Corylus avellana (hazel), Crataegus monogyna (hawthorn), Fraxinus excelsior (ash) and Sambucus nigra (elder).     Data were collected under the NERC Human-modified Tropical Forests (HMTF) Programme by the University of Cambridge in 2015.\n","documentType":"GEMINI_DOCUMENT","identifier":"e24264f8-2821-4d6a-ad77-3688b2c69f24","incomingCitationCount":1,"givenName":["Matheus","D.A.","M.","M.H."],"familyName":["Nunes","Coomes","Davey"],"fullName":["Nunes, M.","Coomes, D.A.","Davey, M.","Nunes, M.H."],"keyword":["NERC Human-modified tropical forests (HMTF)","Fraxinus excelsior","Acer campestre","Sambucus nigra","Acer pseudoplatanus","Crataegus monogyna","Corylus avellana"],"keywordsProject":["NERC Human-modified tropical forests (HMTF)"],"keywordsOther":["Fraxinus excelsior","Acer campestre","Sambucus nigra","Acer pseudoplatanus","Crataegus monogyna","Corylus avellana"],"licence":"Open government licence","lineage":"Data were collected from a field site in Surrey, and analysed at the University of Cambridge.  Refer to Supporting Information for further details.","locations":["POLYGON((-0.344 51.256, -0.344 51.28, -0.302 51.28, -0.302 51.256, -0.344 51.256))"],"organisation":["University of Cambridge","Plant Sciences, University of Cambridge","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e24264f8-2821-4d6a-ad77-3688b2c69f24","10.5285/e24264f8-2821-4d6a-ad77-3688b2c69f24"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","title":"Field spectroscopy and leaf trait data from a field experiment in Surrey [HMTF]","version":1.0,"view":["public","clamw"],"shortenedDescription":"The dataset comprises a range of leaf traits, measured from leaf samples collected from trees growing on deep alluvial soils and shallow chalk soils, near Mickleham in Surrey, UK.  Across both sites, leaves were collected from 66 trees, representing six species. The..."},{"publicationDate":"2023-07-05T00:00:00.000+00:00","authorAffiliation":["IPB University","Sinar Mas Agro Resources and Technology Research Institute","Universiti Putra Malaysia","Wild Asia","UK Centre for Ecology & Hydrology","University of Cambridge","University of Oxford","Nottingham University"],"authorGivenName":["D.","P.","J-P.","M.","B.","I.","J.","M.F.","A.J.","J.A.","S.H.","W.M.","V.J.","E.C."],"authorFamilyName":["Buchori","Hidayat","Caliman","Naim","Azhar","Barrock","Drewer","Harianja","Siti Zulaikah","Jones","Luke","Wan Zaki","Popkin","Reiss-Woolever","Stone","Turner"],"authorFullName":["Buchori, D.","Hidayat, P.","Caliman, J.","Naim, M.","Azhar, B.","Barrock, I.","Drewer, J.","Harianja, M.F.","Siti Zulaikah, A.J.","Jones, J.A.","Luke, S.H.","Wan Zaki, W.M.","Popkin, M.","Reiss-Woolever, V.J.","Stone, J.","Turner, E.C."],"authorOrcid":["https://orcid.org/0000-0002-2843-0737","https://orcid.org/0000-0001-9507-6275","https://orcid.org/0000-0002-6263-6341","https://orcid.org/0000-0002-9607-6151","https://orcid.org/0000-0002-7331-7485","https://orcid.org/0000-0002-8335-5960","https://orcid.org/0000-0001-9508-171X","https://orcid.org/0000-0002-6905-4387","https://orcid.org/0000-0003-2151-4353","https://orcid.org/0000-0003-2715-2234"],"authorRor":["https://ror.org/05smgpd89","https://ror.org/02e91jd64","https://ror.org/00pggkr55","https://ror.org/013meh722","https://ror.org/052gg0110","https://ror.org/01ee9ar58"],"catalogue":"eidc","description":"This dataset includes results from biodiversity, social and environmental surveys of 46 oil palm smallholders and farms in Riau, Indonesia. Biodiversity data includes: pitfall trap data on arthropod abundance and higher-level order identification, sticky trap data on flying invertebrate abundance (identified to higher-level order), transect data on assassin bugs, Nephila spp. spiders and butterflies (identified to species), counts of insects visiting oil palm inflorescences if any open (identified to Elaeidobius kamerunicus and higher-level orders for other groups) and data on meal worm removal from each plot. Environmental data includes: soil temperature readings recorded over 24 hours, information on size of plot, crop type and cover, GPS location, vegetation cover, vegetation height, canopy density, epiphyte cover, soil pH, soil moisture, leaf litter depth, horizon depths, palm herbivory and palm health. Social data includes information (all anonymised) on: plot area, number of palms, sociodemographic data, plantation management practices applied, knowledge and value assigned to wildlife, and yield. Data were collected from November 2021 to June 2022.","documentType":"GEMINI_DOCUMENT","funder":["Biotechnology and Biological Sciences Research Council"],"grant":["BB/T012366/1"],"identifier":"b61a12a2-d091-41af-b451-a14de4f4a3c3","incomingCitationCount":0,"givenName":["D.","P.","J-P.","M.","B.","I.","J.","M.F.","A.J.","J.A.","S.H.","W.M.","V.J.","E.C."],"familyName":["Buchori","Hidayat","Caliman","Naim","Azhar","Barrock","Drewer","Harianja","Siti Zulaikah","Jones","Luke","Wan Zaki","Popkin","Reiss-Woolever","Stone","Turner"],"fullName":["Buchori, D.","Hidayat, P.","Caliman, J.","Naim, M.","Azhar, B.","Barrock, I.","Drewer, J.","Harianja, M.F.","Siti Zulaikah, A.J.","Jones, J.A.","Luke, S.H.","Wan Zaki, W.M.","Popkin, M.","Reiss-Woolever, V.J.","Stone, J.","Turner, E.C."],"keyword":["Riau","oil palm","smallholder","social","soil","vegetation","crop production"],"keywordsOther":["Riau","oil palm","smallholder","social","soil","vegetation","crop production"],"licence":"Open government licence","lineage":"Biodiversity, environmental and social data were collected in a series of field campaigns, led by researchers from Institut Pertanian Bogor (IPB) University, supported by researchers and staff from Sinar Mas Agro Resources and Technology Research Institute.\n\nBiodiversity data collection included standard transect walks of 100m to record abundance and activity of butterflies, as well as numbers of Assassin bugs and Nephila spiders within a 5m x 5m box in front of the recorder. At four points along the transect, separated by 20m, we also recorded ground invertebrate abundance, understory flying invertebrate abundance, and predation. Plastic cups, filled with 70% alcohol and a few drops of detergent, covered with a plate to protect from rain, were used as pitfall traps to sample ground invertebrates. Samples were stored in 70% alcohol. Clear plastic sheets smeared with glue were used as sticky traps, suspended 40cm above the ground and facing south, to collect understory invertebrates. Both traps were collected after 24hours. Sticky traps were photographed to allow later recording of invertebrate abundance. Cards with 6 dead meal worms attached and hung on palm trunks next to sample points were used to assess predation, by recording removal over 24 hours. Finally, the plots were thoroughly searched for any open male or female oil palm inflorescences. These were scored for % openness and observed for 10 minutes, during which time the highest number of insects in major groups were recorded. This survey was repeated 24 hours later.\n\nEnvironmental data collection methods included visual inspection of plots to record cover of different crop types, and using handheld GPS units to record plantation boundaries and size of plantations. At the same four sample points used to set pitfalls and sticky traps, we also made direct measurements of vegetation, palm and soil characteristics. These included field readings of canopy openness using a convex spherical densiometer, direct measures of vegetation height and cover (into categories by eye within a 3m x3m area), and field measures of soil pH and moisture using a Suplong probe. We also scored height, health, % epiphyte cover on the trunk, and level of herbivory by eye on the closest palm to each point. We also dug small soil pits to assess leaf litter depth and then used a standard 10cm deep and 5cm diameter tube to collect soil samples. We also conducted a Visual Evaluation of Soil Structure (VESS) survey to measure depth of soil horizons and associated characteristics, following standard methods.\n\nSocial data were collected through a mixture of telephone and face to face interviews with smallholders, at a time convenient to the smallholders. Some telephone interviews were necessary owing to the impacts of COVID. Ethical permission for interviews were gained from the University of Cambridge Department of Psychology ethics board before work took place, no information was withheld from participants and full written consent was obtained in advance.\n\nOn return to the lab, collected pitfall trap insects were stored in fresh alcohol and identified to order-level. Soil samples were weighed wet and then dried to a constant weight, allowing water content and soil compaction to be calculated. 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