{"numFound":14,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CUniversity+of+Manchester","results":[{"publicationDate":"2016-03-21T00:00:00.000+00:00","authorAffiliation":["University of Manchester","Centre for Ecology & Hydrology","Lancaster University"],"authorGivenName":["E.L.","J.","W.J.","R.D.","N.","R.F.","J.M."],"authorFamilyName":["Fry","Savage","Pritchard","Bardgett","Ostle","Pywell","Bullock"],"authorFullName":["Fry, E.L.","Savage, J.","Pritchard, W.J.","Bardgett, R.D.","Ostle, N.","Pywell, R.F.","Bullock, J.M."],"authorOrcid":["https://orcid.org/0000-0001-7513-2006","https://orcid.org/0000-0002-5280-5148","https://orcid.org/0000-0001-5805-5344","https://orcid.org/0000-0002-5131-0127","https://orcid.org/0000-0003-3263-3702","https://orcid.org/0000-0001-6431-9959","https://orcid.org/0000-0003-0529-4020"],"authorRor":["https://ror.org/027m9bs27","https://ror.org/00pggkr55","https://ror.org/04f2nsd36"],"catalogue":"eidc","description":"This dataset contains ecosystem function and vegetation survey data from soils collected from Salisbury Plain, UK. 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The data describe plant above and below ground biomass, coarse and fine root biomass, colonisation of roots by Frankia and ectomycorrhizal fungi, ecosystem carbon fluxes, capture of 13C from a pulse labelling process, 15N content of leaves, and soil nutrients.  ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/M015653/1","NE/M015653/2"],"identifier":"8816a55a-0e2e-4414-872f-3575170585dc","incomingCitationCount":0,"givenName":["David","A.","A.F.S.","D."],"familyName":["Johnson","Ardanuy","Taylor"],"fullName":["Johnson, D.","Ardanuy, A.","Taylor, A.F.S."],"keyword":["Ectomycorrhiza","carbon flux","nitrogen uptake","soil nutrients","Alnus glutinosa","symbiosis"],"keywordsOther":["Ectomycorrhiza","carbon flux","nitrogen uptake","soil nutrients","Alnus glutinosa","symbiosis"],"licence":"Open government licence","lineage":"Plants were transplanted into cores and grown in a controlled environmental facility. Soil nutrient data was collected from the cores using a combination of ion-exchange probes and acid digestion. A pulse labelling procedure was undertaken to provide 13CO2 to plants, and 3 days later the cores were dismantled and harvested. Analytical facilities were checked for quality control against known standards, and the entire dataset collated and scrutinised for outliers and unusual values.","orcid":["https://orcid.org/0000-0003-2299-2525","https://orcid.org/0000-0003-0727-8171"],"organisation":["University of Manchester","James Hutton Institute","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8816a55a-0e2e-4414-872f-3575170585dc","10.5285/8816a55a-0e2e-4414-872f-3575170585dc"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/027m9bs27","https://ror.org/03rzp5127","https://ror.org/04xw4m193"],"state":"published","title":"Plant biomass, nutrition, carbon flux and soil nutrients in common alder (Alnus glutinosa) grown on home and away soil from Aberdeenshire, Scotland","version":1.0,"view":["public","glenn"],"shortenedDescription":"The data are derived from Alnus glutinosa plants grown in intact soil cores collected from beneath three co-occurring tree species.  The data describe plant above and below ground biomass, coarse and fine root biomass, colonisation of roots by Frankia and ectomycorrhizal..."},{"publicationDate":"2016-03-21T00:00:00.000+00:00","authorAffiliation":["University of Manchester","Centre for Ecology & Hydrology"],"authorGivenName":["E.L.","J.","W.J.","R.D.","R.F.","J.M."],"authorFamilyName":["Fry","Savage","Pritchard","Bardgett","Pywell","Bullock"],"authorFullName":["Fry, E.L.","Savage, J.","Pritchard, W.J.","Bardgett, R.D.","Pywell, R.F.","Bullock, J.M."],"authorOrcid":["https://orcid.org/0000-0001-7513-2006","https://orcid.org/0000-0002-5280-5148","https://orcid.org/0000-0001-5805-5344","https://orcid.org/0000-0002-5131-0127","https://orcid.org/0000-0001-6431-9959","https://orcid.org/0000-0003-0529-4020"],"authorRor":["https://ror.org/027m9bs27","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains carbon and nitrogen stock data from soils collected from Salisbury Plain, UK. The sites were selected to reflect the four main grassland management types on Salisbury Plain ranging from arable cropland to species rich grassland, with six representative grassland plots for each type (24 sites in total). Each site had two replicates for each variable measured. The data collected was intended to illustrate a gradient of ecosystem functioning and vegetation change as the grassland becomes more extensively managed. The field sampling was conducted by the University of Manchester and the Centre for Ecology & Hydrology at Wallingford. Soil C and N were analysed by the University of Manchester. The data includes carbon and nitrogen budgets to depth at all sites.","documentType":"GEMINI_DOCUMENT","identifier":"58709d9b-2b52-4f5d-8f3b-49354e664aea","incomingCitationCount":0,"givenName":["Ellen","E.L.","J.","W.J.","R.D.","R.F.","J.M."],"familyName":["Fry","Savage","Pritchard","Bardgett","Pywell","Bullock"],"fullName":["Fry, E.","Fry, E.L.","Savage, J.","Pritchard, W.J.","Bardgett, R.D.","Pywell, R.F.","Bullock, J.M."],"keyword":["Wessex BESS","Nitrogen stock","Intensive grassland","Reverting grassland","Species rich grassland","Calcareous grassland","BESS","carbon stock","arable farming","grassland"],"keywordsProject":["Wessex BESS"],"keywordsOther":["Nitrogen stock","Intensive grassland","Reverting grassland","Species rich grassland","Calcareous grassland","BESS","carbon stock","arable farming","grassland"],"licence":"Open government licence","lineage":"The data presented in the set have been derived from equations presented in the methods document, in order to correct for bulk density and to apply to larger scales. The final data have been collated and after outlier removal, but have not been subjected to any transformations to alter variance or normality.","locations":["POLYGON((-1.984 51.194, -1.984 51.3, -1.791 51.3, -1.791 51.194, -1.984 51.194))"],"orcid":["https://orcid.org/0000-0001-7513-2006","https://orcid.org/0000-0002-5280-5148","https://orcid.org/0000-0001-5805-5344","https://orcid.org/0000-0002-5131-0127","https://orcid.org/0000-0001-6431-9959","https://orcid.org/0000-0003-0529-4020"],"organisation":["University of Manchester","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre","Centre for Ecology & Hydrology"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/58709d9b-2b52-4f5d-8f3b-49354e664aea","10.5285/58709d9b-2b52-4f5d-8f3b-49354e664aea"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/027m9bs27","https://ror.org/04xw4m193","https://ror.org/00pggkr55"],"state":"published","title":"Total carbon and nitrogen stocks across a land use gradient on Salisbury Plain in June 2014","version":1.0,"view":["public","hajd"],"shortenedDescription":"This dataset contains carbon and nitrogen stock data from soils collected from Salisbury Plain, UK. The sites were selected to reflect the four main grassland management types on Salisbury Plain ranging from arable cropland to species rich grassland, with six representative..."},{"publicationDate":"2025-02-12T00:00:00.000+00:00","authorAffiliation":["University of Manchester","University of Minnesota"],"authorGivenName":["J. A.","F.","K.","A.","J. N. V.","J.","M.","S.","L.","W. R.","R.","E."],"authorFamilyName":["Connolly","Del Carratore","Schmidt","Bisesi","Martinson","Chua","Kuhs","Boneza","Heinsch","Kinkel","Smanski","Harcombe","Breitling","Takano"],"authorFullName":["Connolly, J.A.","Del Carratore, F.","Schmidt, K.","Bisesi, A.","Martinson, J.N.V.","Chua, J.","Kuhs, M.","Boneza, M.","Heinsch, S.","Kinkel, L.","Smanski, M.","Harcombe, W.R.","Breitling, R.","Takano, E."],"authorOrcid":["https://orcid.org/0000-0003-3643-5578","https://orcid.org/0000-0003-1647-7818","https://orcid.org/0000-0002-5331-5589","https://orcid.org/0000-0001-7173-0922","https://orcid.org/0000-0002-6791-3256"],"catalogue":"eidc","description":"This dataset contains untargeted metabolomic profiles of paired cultures of 4 interacting Streptomyces bacteria. The bacteria were originally isolated from a nature reserve in Minnesota USA. Daily samples of spot cultures grown in adjacent pairs on solid ISP2 medium were taken from day 2 to 6 in triplicate. Metabolites were obtained by cold methanol extraction, and liquid chromatography-mass spectrometry data was collected in both positive and negative ionisation modes. This dataset contains raw LC-MS (liquid chromatography mass spectrometry) data converted to the open-source .mzML format, of each sample run in both positive and negative ionisation modes. This includes, mass-to-charge measurements, elution time, and ion count intensity. These data were collected to investigate how the metabolism of the interacting strains changes in response to neighbouring bacterial cultures.\nThis work was funded by NERC (NE/T010959/1) and National Science Foundation (USA, 1935458).\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","National Science Foundation"],"grant":["NE/T010959/1","USA, 1935458"],"identifier":"475d6c02-45bb-4ac4-a31a-4a23c7c9cb2e","incomingCitationCount":0,"givenName":["J. A.","F.","K.","A.","J. N. V.","J.","M.","S.","L.","W. 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Data was collected on a Q-Exactive Mass Spectrometer (ThermoFisher). Outputs were converted to mzML format by the ProteoWizard MS converter. Pooled quality control samples were analysed at every 6th injection to assess for analytical drift over time. The sample injection sequence was randomised.","orcid":["https://orcid.org/0000-0003-3643-5578","https://orcid.org/0000-0003-1647-7818","https://orcid.org/0000-0002-5331-5589","https://orcid.org/0000-0001-7173-0922","https://orcid.org/0000-0002-6791-3256"],"organisation":["University of Manchester","University of Minnesota"," University of Manchester","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/475d6c02-45bb-4ac4-a31a-4a23c7c9cb2e","10.5285/475d6c02-45bb-4ac4-a31a-4a23c7c9cb2e"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":[" University of Manchester"],"ror":["https://ror.org/04xw4m193"],"state":"published","supplementalName":["Schlatter, D.C., DavelosBaines, A.L., Xiao, K. et al. Resource Use of Soilborne Streptomyces Varies with Location, Phylogeny, and Nitrogen Amendment. Microb Ecol 66, 961–971 (2013). "],"title":"Untargeted metabolomic profiles of paired cultures of four strains of Streptomyces bacteria isolated from a nature reserve in Minnesota, USA","topic":["0/Biodiversity/"],"version":1.0,"view":["public","crimar"],"shortenedDescription":"This dataset contains untargeted metabolomic profiles of paired cultures of 4 interacting Streptomyces bacteria. The bacteria were originally isolated from a nature reserve in Minnesota USA. Daily samples of spot cultures grown in adjacent pairs on solid ISP2 medium..."},{"publicationDate":"2024-01-18T00:00:00.000+00:00","authorAffiliation":["University of Plymouth","University of Salford","University of Twente","University of Manchester"],"authorGivenName":["A.","E.","I.","B.D.","G."],"authorFamilyName":["Sgarabotto","Majtan","Manzella","Raby","Rogers","Fourtakas"],"authorFullName":["Sgarabotto, A.","Majtan, E.","Manzella, I.","Raby, A.","Rogers, B.D.","Fourtakas, G."],"authorOrcid":["https://orcid.org/0000-0002-4740-784X","https://orcid.org/0000-0002-5623-3263","https://orcid.org/0000-0001-7518-819X","https://orcid.org/0000-0002-8959-0080","https://orcid.org/0000-0002-3269-7979","https://orcid.org/0000-0001-8584-3020"],"authorRor":["https://ror.org/008n7pv89","https://ror.org/01tmqtf75","https://ror.org/006hf6230","https://ror.org/027m9bs27"],"catalogue":"eidc","description":"This dataset contains outputs from the numerical simulations of a single cylindrical woody debris being released in a flume (0.6  m wide and 6.0 m long) with a flow depth of 0.208 m and travelling downstream. The outputs include: position, orientation, linear velocity and acceleration, and angular velocity and acceleration. The simulations were carried out by using DualSPHysics, an open source SPH-based modelling framework. Four flow conditions and three different initial orientations (0, -5 and +5 deg) were simulated. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V003402/1"],"identifier":"2221837a-98b9-4802-9e10-72b6e9c84136","incomingCitationCount":0,"givenName":["A.","E.","I.","B.D.","G."],"familyName":["Sgarabotto","Majtan","Manzella","Raby","Rogers","Fourtakas"],"fullName":["Sgarabotto, A.","Majtan, E.","Manzella, I.","Raby, A.","Rogers, B.D.","Fourtakas, G."],"keyword":["woody debris","SPH","DualSPHysics","flume simulations","woody debris transport"],"keywordsOther":["woody debris","SPH","DualSPHysics","flume simulations","woody debris transport"],"licence":"Open government licence","lineage":"The simulations were carried out using DualSPHysics, an open source SPH-based modelling framework. Four flow conditions with an initial particle diameter equal to 0.008 m were simulated. For each flow condition, three different initial orientations of the woody debris (0, -5 and +5 deg) were tested. The .xml files are the input for the DualSPHysics numerical simulations, they contain all the information needed to set up the simulations and were generated following the guidance provided with DualSPHysics. All the elements needed to define the simulation, namely fluid domain geometry, solid boundaries, and buffer zones for inlet/outlet are described in .vtk files which can be read by Paraview. The motion of the woody debris at each time step is contained in an output CSV file. Further details are provided in the ReadMe.docx.","orcid":["https://orcid.org/0000-0002-4740-784X","https://orcid.org/0000-0002-5623-3263","https://orcid.org/0000-0001-7518-819X","https://orcid.org/0000-0002-8959-0080","https://orcid.org/0000-0002-3269-7979","https://orcid.org/0000-0001-8584-3020"],"organisation":["University of Plymouth","University of Salford","University of Twente","University of Manchester","University of Exeter","University of East Anglia","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/2221837a-98b9-4802-9e10-72b6e9c84136","10.5285/2221837a-98b9-4802-9e10-72b6e9c84136"],"resourceStatus":"Embargoed","resourceType":"Non-geographic dataset","rightsHolder":["University of Plymouth","University of Salford","University of Manchester","University of Exeter","University of East Anglia"],"ror":["https://ror.org/008n7pv89","https://ror.org/01tmqtf75","https://ror.org/006hf6230","https://ror.org/027m9bs27","https://ror.org/04xw4m193"],"state":"published","title":"Simulated motion of cylindrical woody debris travelling along a straight flume using the DualSPHysics modelling framework","version":1.0,"view":["public","jgar"],"shortenedDescription":"This dataset contains outputs from the numerical simulations of a single cylindrical woody debris being released in a flume (0.6  m wide and 6.0 m long) with a flow depth of 0.208 m and travelling downstream. The outputs include: position, orientation, linear velocity..."},{"publicationDate":"2021-04-28T00:00:00.000+00:00","authorAffiliation":["The University of Manchester","Innsbruck University","UK Centre for Ecology & Hydrology","Helmholtz Zentrum München"],"authorGivenName":["A.A.D.","M.","W.J.","L.","T.","A.","H.S.K.","I.","H.K.","D.X.","R.","R.I.","R.D."],"authorFamilyName":["Broadbent","Bahn","Pritchard","Newbold","Goodall","Guinta","Snell","Cordero","Michas","Grant","Soto","Kaufmann","Schloter","Griffiths","Bardgett"],"authorFullName":["Broadbent, A.A.D.","Bahn, M.","Pritchard, W.J.","Newbold, L.","Goodall, T.","Guinta, A.","Snell, H.S.K.","Cordero, I.","Michas, A.","Grant, H.K.","Soto, D.X.","Kaufmann, R.","Schloter, M.","Griffiths, R.I.","Bardgett, R.D."],"authorOrcid":["https://orcid.org/0000-0002-8438-7163"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Data comprise soil microbial and biogeochemical data collected during a climate and vegetation change experiment conducted across three valleys in Tyrol, in the Austrian Alps. Sites were located near the villages of Obergurgl (lat., long. = 46.844833, 11.023783; mean elevation = 2279m), Soelden (46.978367, 10.972217, mean elevation = 2469m) and Vent (46.863217, 10.896800, mean elevation = 2472m).\n\nSoil microbial data include phospholipid fatty acid (PLFA) analyses, and bacterial (16S Small subunit ribosomal RNA) and fungal (internal transcribed spacer region 2) high throughput sequences. Soil biogeochemical data include soil extracellular enzyme activities, soil pH, gravimetric moisture content and various C and N pools and fluxes.\n\nThe experiment was funded by NERC project NE/N009452/1.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/N009452/1"],"identifier":"977c422d-8529-432d-85d7-5de3c8dfdc5d","incomingCitationCount":0,"givenName":["A.A.D.","M.","W.J.","L.","T.","A.","H.S.K.","I.","H.K.","D.X.","R.","R.I.","R.D."],"familyName":["Broadbent","Bahn","Pritchard","Newbold","Goodall","Guinta","Snell","Cordero","Michas","Grant","Soto","Kaufmann","Schloter","Griffiths","Bardgett"],"fullName":["Broadbent, A.A.D.","Bahn, M.","Pritchard, W.J.","Newbold, L.","Goodall, T.","Guinta, A.","Snell, H.S.K.","Cordero, I.","Michas, A.","Grant, H.K.","Soto, D.X.","Kaufmann, R.","Schloter, M.","Griffiths, R.I.","Bardgett, R.D."],"keyword":["Soil","Climate and climate change","Ecosystem functions","alpine","Obergurgl","Soil microbiome","Soelden ","Vent","dissolved organic nitrogen","Microbial biomass","Enzyme activity","Urease activity","Phospholipid-derived fatty acids (PLFA)","Gravimetric soil water content","carbon","nitrogen","ammonium","nitrate","soil chemistry","biomass","microbial resource","soil water","Austria"],"keywordsTheme":["Soil","Climate and climate change"],"keywordsOther":["Ecosystem functions","alpine","Obergurgl","Soil microbiome","Soelden ","Vent","dissolved organic nitrogen","Microbial biomass","Enzyme activity","Urease activity","Phospholipid-derived fatty acids (PLFA)","Gravimetric soil water content","carbon","nitrogen","ammonium","nitrate","soil chemistry","biomass","microbial resource","soil water","Austria"],"licence":"Open government licence","lineage":"All data were collected by the authors according to standardised protocols. Soil was sampled on 22nd - 24th July 2019 by taking soil cores (Ø = 2 cm, depth = 10 cm) using a steel corer from five random locations in each plot (plot size = 2m x 2m). Soil cores from the same plot were pooled and homogenised, any vegetation or litter was separated and discarded. Sub-samples (approx. 200 mg) were directly taken and lysed in the field for molecular analyses. Soil samples were sieved (4 mm), stored at 4°C for up to 2 weeks, and shipped to The University of Manchester (UK) Soil and Ecosystem Ecology Lab for extracellular soil enzyme and biogeochemical analyses. Lysed soil samples for molecular analyses were stored at -80°C and shipped to UKCEH Wallingford for DNA extraction and sequencing. We ensured all measured values fit within those of calibration standards. All calculations were checked for errors before data was accepted and data were checked for any anomalies.","locations":["POLYGON((10.972 46.844, 10.972 46.978, 11.023 46.978, 11.023 46.844, 10.972 46.844))"],"orcid":["https://orcid.org/0000-0002-8438-7163"],"organisation":["The University of Manchester","Innsbruck University","UK Centre for Ecology & Hydrology","Helmholtz Zentrum München","University of Manchester","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/977c422d-8529-432d-85d7-5de3c8dfdc5d","10.5285/977c422d-8529-432d-85d7-5de3c8dfdc5d"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Alpine grassland soil microbial and biogeochemical data from a climate change and shrub expansion experiment in Tyrol, Austria, July 2019","topic":["0/Soil/","0/Climate and climate change/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"Data comprise soil microbial and biogeochemical data collected during a climate and vegetation change experiment conducted across three valleys in Tyrol, in the Austrian Alps. Sites were located near the villages of Obergurgl (lat., long. = 46.844833, 11.023783; mean..."},{"publicationDate":"2023-01-09T00:00:00.000+00:00","authorAffiliation":["University of Manchester"],"authorGivenName":["David","F"],"authorFamilyName":["Johnson","Voller"],"authorFullName":["Johnson, D.","Voller, F."],"authorOrcid":["https://orcid.org/0000-0003-2299-2525","https://orcid.org/0000-0002-3159-488X"],"authorRor":["https://ror.org/027m9bs27"],"catalogue":"eidc","description":"Seedlings were grown in soil collected from an experiment at Hambleton Forest, North Yorkshire. Soils originated from plots containing either Scots pine or birch monocultures, or a mixture of both species.  In the lab, pairs of seedlings of birch and Scots pine were grown as monocultures and mixtures from each of the three plot treatments.  The data represent the biomass, leaf C:N ratio and mycorrhizal status determined after 20 weeks.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"7991871e-382f-422f-b5b2-91b4f6d8598f","incomingCitationCount":0,"givenName":["David","F","D."],"familyName":["Johnson","Voller"],"fullName":["Johnson, D.","Voller, F."],"keyword":["Hambleton Forest","North Yorkshire","Ectomycorrhiza","Plantation","seedling","Productivity","productivity","birch","Scots pine","biomass","mycorrhiza","carbon","nitrogen"],"keywordsPlace":["Hambleton Forest","North Yorkshire"],"keywordsOther":["Ectomycorrhiza","Plantation","seedling","Productivity","productivity","birch","Scots pine","biomass","mycorrhiza","carbon","nitrogen"],"licence":"Open government licence","lineage":"Soils were collected and transported to the lab and sieved.  Conetainers were filled with sieved soil and non-mycorrhizal seedlings germinated for 2-4 weeks were placed in the containers and transferred to a controlled environment chamber for 20 weeks. Plants were extracted, roots removed and assayed for colonisation under a microscope, and leafs dried, weighed, ground and analysed on a CN analyser.\n\nC and N analysis was using a CUBE elemental analyser and included known standards to check for drift and precision.\n\nBalances are calibrated regularly.\n\nData were imported into Excel and plotted to check for any outliers.","locations":["POLYGON((-2.274 53.716, -2.274 54.588, -0.481 54.588, -0.481 53.716, -2.274 53.716))"],"orcid":["https://orcid.org/0000-0003-2299-2525","https://orcid.org/0000-0002-3159-488X"],"organisation":["University of Manchester","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7991871e-382f-422f-b5b2-91b4f6d8598f","10.5285/7991871e-382f-422f-b5b2-91b4f6d8598f"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/027m9bs27","https://ror.org/04xw4m193"],"state":"published","title":"Biomass, mycorrhizal colonization, carbon and nitrogen content of Scots pine and birch seedlings grown in soil from mixed and monoculture stands","version":1.0,"view":["public","glenn"],"shortenedDescription":"Seedlings were grown in soil collected from an experiment at Hambleton Forest, North Yorkshire. Soils originated from plots containing either Scots pine or birch monocultures, or a mixture of both species.  In the lab, pairs of seedlings of birch and Scots pine were..."},{"publicationDate":"2024-09-06T00:00:00.000+00:00","authorAffiliation":["University of Manchester","University of Minnesota"],"authorGivenName":["J.A.","F.","K.","A.","J.N.V.","J.","M.","S.","L.","W.R.","R.","E."],"authorFamilyName":["Connolly","Del Carratore","Schmidt","Bisesi","Martinson","Chua","Kuhs","Boneza","Heinsch","Kinkel","Smanski","Harcombe","Breitling","Takano"],"authorFullName":["Connolly, J.A.","Del Carratore, F.","Schmidt, K.","Bisesi, A.","Martinson, J.N.V.","Chua, J.","Kuhs, M.","Boneza, M.","Heinsch, S.","Kinkel, L.","Smanski, M.","Harcombe, W.R.","Breitling, R.","Takano, E."],"authorOrcid":["https://orcid.org/0000-0003-3643-5578","https://orcid.org/0000-0003-1647-7818","https://orcid.org/0000-0002-5331-5589","https://orcid.org/0000-0001-7173-0922","https://orcid.org/0000-0002-6791-3256"],"authorRor":["https://ror.org/027m9bs27","https://ror.org/017zqws13"],"catalogue":"eidc","description":"This dataset contains photographs of pairs of Streptomyces bacteria and it was collected with the aim of interrogating the manner and means of the interactions. The four imaged Streptomyces were originally isolated from a nature reserve in Minnesota, USA. Images show the interaction phenotypes between each pairing (including self to self), with images taken daily on International Streptomyces Project-2 (ISP-2) agar. \n\nThis work was funded by NERC (NE/T010959/1) and National Science Foundation (USA, 1935458).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/T010959/1"],"identifier":"3f48eb4c-bc0d-49e3-af71-dcff6d88c534","incomingCitationCount":0,"givenName":["J.A.","F.","K.","A.","J.N.V.","J.","M.","S.","L.","W.R.","R.","E."],"familyName":["Connolly","Del Carratore","Schmidt","Bisesi","Martinson","Chua","Kuhs","Boneza","Heinsch","Kinkel","Smanski","Harcombe","Breitling","Takano"],"fullName":["Connolly, J.A.","Del Carratore, F.","Schmidt, K.","Bisesi, A.","Martinson, J.N.V.","Chua, J.","Kuhs, M.","Boneza, M.","Heinsch, S.","Kinkel, L.","Smanski, M.","Harcombe, W.R.","Breitling, R.","Takano, E."],"keyword":["Bacteria","Microbiology","Co-culture","Microbiome","Streptomyces","Phenotypes","Actinomycetes"],"keywordsOther":["Bacteria","Microbiology","Co-culture","Microbiome","Streptomyces","Phenotypes","Actinomycetes"],"licence":"Open government licence","lineage":"The four Streptomyces strains were previously isolated from Minnesota soil as described in Schlatter, D.C. et al (2013), co-culturing experiments were performed in the Manchester Institute of Biotechnology, University of Manchester, UK. Methodological details are included in the supplementary information of this submission.\n\nPhotographs of interacting paired cultures of bacteria were taken daily from days 2-6 post inoculation, in biological quadruplicate.","orcid":["https://orcid.org/0000-0003-3643-5578","https://orcid.org/0000-0003-1647-7818","https://orcid.org/0000-0002-5331-5589","https://orcid.org/0000-0001-7173-0922","https://orcid.org/0000-0002-6791-3256"],"organisation":["University of Manchester","University of Minnesota","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/3f48eb4c-bc0d-49e3-af71-dcff6d88c534","10.5285/3f48eb4c-bc0d-49e3-af71-dcff6d88c534"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/027m9bs27","https://ror.org/017zqws13","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Schlatter, D.C., DavelosBaines, A.L., Xiao, K. et al. Resource Use of Soilborne Streptomyces Varies with Location, Phylogeny, and Nitrogen Amendment. Microb Ecol 66, 961–971 (2013). "],"title":"Daily photographs of paired phenotypic interactions between four strains of Streptomyces bacteria isolated from a nature reserve in Minnesota, USA","version":1.0,"view":["public","crimar"],"shortenedDescription":"This dataset contains photographs of pairs of Streptomyces bacteria and it was collected with the aim of interrogating the manner and means of the interactions. The four imaged Streptomyces were originally isolated from a nature reserve in Minnesota, USA. Images show..."},{"publicationDate":"2024-11-21T00:00:00.000+00:00","authorAffiliation":["University of Manchester","University of Minnesota"],"authorGivenName":["J. A.","F.","K.","A.","J. N. V.","J.","M.","S.","L.","W. R.","R.","E."],"authorFamilyName":["Connolly","Del Carratore","Schmidt","Bisesi","Martinson","Chua","Kuhs","Boneza","Heinsch","Kinkel","Smanski","Harcombe","Breitling","Takano"],"authorFullName":["Connolly, J.A.","Del Carratore, F.","Schmidt, K.","Bisesi, A.","Martinson, J.N.V.","Chua, J.","Kuhs, M.","Boneza, M.","Heinsch, S.","Kinkel, L.","Smanski, M.","Harcombe, W.R.","Breitling, R.","Takano, E."],"authorOrcid":["https://orcid.org/0000-0003-3643-5578","https://orcid.org/0000-0003-1647-7818","https://orcid.org/0000-0002-5331-5589","https://orcid.org/0000-0001-7173-0922","https://orcid.org/0000-0002-6791-3256"],"authorRor":["https://ror.org/027m9bs27","https://ror.org/017zqws13"],"catalogue":"eidc","description":"This dataset contains features detected by untargeted metabolomics analysis of paired cultures of 4 interacting Streptomyces bacteria. The bacteria were originally isolated from a nature reserve in Minnesota USA. Daily samples of spot cultures grown in adjacent pairs on solid ISP2 medium were taken from day 2 to 6 in triplicate. Metabolites were obtained by cold methanol extraction, and liquid chromatography-mass spectrometry data was collected in both positive and negative ionisation modes. This dataset contains the mass-to-charge (m/z) and retention time of identified peaks, and their ion intensity in each sample. The relative abundance of these identified features was later compared between pairs of interacting strains to gain insight into changes in their metabolism. \n\nThis work was funded by NERC (NE/T010959/1) and National Science Foundation (USA, 1935458).","documentType":"GEMINI_DOCUMENT","identifier":"4921f306-5efa-4bf7-a15e-a157c2665889","incomingCitationCount":0,"givenName":["J. A.","F.","K.","A.","J. N. V.","J.","M.","S.","L.","W. R.","R.","E."],"familyName":["Connolly","Del Carratore","Schmidt","Bisesi","Martinson","Chua","Kuhs","Boneza","Heinsch","Kinkel","Smanski","Harcombe","Breitling","Takano"],"fullName":["Connolly, J.A.","Del Carratore, F.","Schmidt, K.","Bisesi, A.","Martinson, J.N.V.","Chua, J.","Kuhs, M.","Boneza, M.","Heinsch, S.","Kinkel, L.","Smanski, M.","Harcombe, W.R.","Breitling, R.","Takano, E."],"keyword":["Minnesota","Biodiversity","bacteria","microbiology","co-culture","microbiome","Streptomyces","mass spectrometry","Actinomycetes","metabolomics","untargeted"],"keywordsPlace":["Minnesota"],"keywordsTheme":["Biodiversity"],"keywordsOther":["bacteria","microbiology","co-culture","microbiome","Streptomyces","mass spectrometry","Actinomycetes","metabolomics","untargeted"],"licence":"Open government licence","lineage":"The 4 Streptomyces strains were previously isolated from Minnesota soil as described in Schlatter, D.C. et al (2013), co-culturing, metabolite extraction and LC-MS experiments were performed in the Manchester Institute of Biotechnology, University of Manchester, UK. Data was collected on a Q-Exactive Mass Spectrometer (ThermoFisher). Outputs were converted to mzML format by the ProteoWizard MS converter. Noise removal, signal filtering and peak matching was performed in the open source mzMatch software. Pooled quality control samples were analysed at every 6th injection to assess for analytical drift over time. The sample injection sequence was randomised. ","orcid":["https://orcid.org/0000-0003-3643-5578","https://orcid.org/0000-0003-1647-7818","https://orcid.org/0000-0002-5331-5589","https://orcid.org/0000-0001-7173-0922","https://orcid.org/0000-0002-6791-3256"],"organisation":["University of Manchester","University of Minnesota","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/4921f306-5efa-4bf7-a15e-a157c2665889","10.5285/4921f306-5efa-4bf7-a15e-a157c2665889"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/027m9bs27","https://ror.org/017zqws13","https://ror.org/04xw4m193"],"state":"published","title":"Features detected by untargeted metabolomic analysis of paired cultures of four strains of Streptomyces bacteria isolated from a nature reserve in Minnesota, USA","topic":["0/Biodiversity/"],"version":1.0,"view":["public","crimar"],"shortenedDescription":"This dataset contains features detected by untargeted metabolomics analysis of paired cultures of 4 interacting Streptomyces bacteria. The bacteria were originally isolated from a nature reserve in Minnesota USA. Daily samples of spot cultures grown in adjacent pairs..."},{"publicationDate":"2022-11-07T00:00:00.000+00:00","authorAffiliation":["University of Manchester"],"authorGivenName":["R. "],"authorFamilyName":["Wright"],"authorFullName":["Wright, R."],"authorOrcid":["https://orcid.org/0000-0002-8095-8256"],"authorRor":["https://ror.org/027m9bs27"],"catalogue":"eidc","description":"This dataset describes the composition of a co-evolving community (as colony forming units) over a 30-transfer selection experiment in soil microcosms. The community consists of Pseudomonas fluorescens SBW25 + Pseudomonas putida KT2440 + plasmid pQBR57. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R008825/2"],"identifier":"9da9bf05-fdbf-41f9-8591-1a4af9b84000","incomingCitationCount":0,"givenName":["R. "],"familyName":["Wright"],"fullName":["Wright, R."],"keyword":["co-evolution","plasmid compensation","SBW25","pQBR57"],"keywordsOther":["co-evolution","plasmid compensation","SBW25","pQBR57"],"licence":"Open government licence","lineage":"This is count data collected by plating bacterial populations on selective agar. File includes counts, dilution factors and volumes used to calculate density as colony forming units per ml (CFU/ml).","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-8095-8256"],"organisation":["University of Manchester","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9da9bf05-fdbf-41f9-8591-1a4af9b84000","10.5285/9da9bf05-fdbf-41f9-8591-1a4af9b84000"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/027m9bs27","https://ror.org/04xw4m193"],"state":"published","title":"Population dynamics of evolving bacterial populations in soil, 2020","version":1.0,"view":["public","margla"],"shortenedDescription":"This dataset describes the composition of a co-evolving community (as colony forming units) over a 30-transfer selection experiment in soil microcosms. The community consists of Pseudomonas fluorescens SBW25 + Pseudomonas putida KT2440 + plasmid pQBR57. "},{"publicationDate":"2024-03-04T00:00:00.000+00:00","authorAffiliation":["University of Manchester","Mahavir Cancer Sansthan"],"authorGivenName":["L.A.","D.A.","A."],"authorFamilyName":["Richards","Polya","Ghosh","Kumar"],"authorFullName":["Richards, L.A.","Polya, D.A.","Ghosh, A.","Kumar, A."],"authorOrcid":["https://orcid.org/0000-0001-5267-9850","https://orcid.org/0000-0002-7484-6696","https://orcid.org/0000-0003-3602-2327","https://orcid.org/0000-0002-8946-5909"],"authorRor":["https://ror.org/027m9bs27","https://ror.org/028pheb30"],"catalogue":"eidc","description":"This dataset contains water chemistry for inlet samples for remediation systems in Bihar, India and associated remediation system efficiency for arsenic removal. The dataset contains paired inlet-outlet data for 31 household and community groundwater remediation systems of different technology types (split into reverse osmosis/RO and non-reverse osmosis) and settings (household and non-household). The chemical data includes the composition of inlet water (concentrations of Fe, P, As, Ca, Mg, Na and Si) and associated arsenic removal.\n\nThis data was generated as part of the Indo-UK Water Quality Programme Project FAR-GANGA (NE/R003386/1 and DST/TM/INDO-UK/2K17/55(C) & 55(G)).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Department of Science & Technology"],"grant":["NE/R003386/1","DST/TM/INDO-UK/2K17/55(C)","DST/TM/INDO-UK/2K17/55(G)"],"identifier":"77700f8e-5da6-45ab-9c12-df1a7d20bc32","incomingCitationCount":0,"givenName":["L.A.","D.A.","A."],"familyName":["Richards","Polya","Ghosh","Kumar"],"fullName":["Richards, L.A.","Polya, D.A.","Ghosh, A.","Kumar, A."],"keyword":["inorganic contaminants","decision-support","remediation","groundwater","water treatment","arsenic"],"keywordsOther":["inorganic contaminants","decision-support","remediation","groundwater","water treatment","arsenic"],"licence":"Non-Open government licence","lineage":"A detailed description of the lineage of the data, including QA/QC steps, is included in the relevant publication Richards et al 2022. In brief, water samples were collected from remediation systems primarily in Bihar, India in 2019 as part of a wider groundwater sampling campaign of groundwater across Bihar. Groundwater samples were analysed using in-situ and laboratory techniques; concentrations of Fe, P, As, Ca, Mg, Na and Si were measured in the Manchester Analytical Geochemical Unit at The University of Manchester using inductively coupled plasma mass spectrometry (Agilent 7500cx) and inductively coupled plasma atomic emission spectrometry (Perkin-Elmer Optima 5300 dual view).","locations":["POLYGON((83.079 24.107, 83.079 27.571, 88.594 27.571, 88.594 24.107, 83.079 24.107))"],"orcid":["https://orcid.org/0000-0001-5267-9850","https://orcid.org/0000-0002-7484-6696","https://orcid.org/0000-0003-3602-2327","https://orcid.org/0000-0002-8946-5909"],"organisation":["University of Manchester","Mahavir Cancer Sansthan","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/77700f8e-5da6-45ab-9c12-df1a7d20bc32","10.5285/77700f8e-5da6-45ab-9c12-df1a7d20bc32"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/027m9bs27","https://ror.org/028pheb30","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Richards et al 2022, Household and community systems for groundwater remediation in Bihar, India: Arsenic and inorganic contaminant removal, controls and implications for remediation selection. Science of the Total Environment, Volume 830, 154580"],"supplementalName":["Related paper","FAR-GANGA website"],"title":"Hydrogeochemical data for groundwater remediation systems in Bihar, India, 2018-2022","version":1.0,"view":["public","hajd"],"shortenedDescription":"This dataset contains water chemistry for inlet samples for remediation systems in Bihar, India and associated remediation system efficiency for arsenic removal. The dataset contains paired inlet-outlet data for 31 household and community groundwater remediation systems..."},{"publicationDate":"2024-05-22T00:00:00.000+00:00","authorAffiliation":["University of Amsterdam","University of Manchester","Bangor university"],"authorGivenName":["F.T.","C.G.","R.I."],"authorFamilyName":["de Vries","Knight","Griffiths"],"authorFullName":["de Vries, F.T.","Knight, C.G.","Griffiths, R.I."],"authorOrcid":["https://orcid.org/0000-0002-6822-8883","https://orcid.org/0000-0001-9815-4267","https://orcid.org/0000-0002-3341-4547"],"catalogue":"eidc","description":"This dataset comprises soil and environmental data for multiple European grassland soil samples which had been subjected to multiple climatic disturbances in the laboratory (including temporal responses to heat, freezing, flooding and drought). The data include information on sample provenance (site, replicate, treatments imposed, site description, etc.); measured metrics including functional measures (greenhouse gas fluxes, enzymes) and soil properties; and accession numbers for molecular data submitted to the European Nucleotide Archive. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/P01206X/1"," NE/P011551/1"],"identifier":"4ff83dca-b836-469c-864d-69a34ff904f9","incomingCitationCount":0,"givenName":["F.T.","C.G.","R.I.","Rob"],"familyName":["de Vries","Knight","Griffiths"],"fullName":["de Vries, F.T.","Knight, C.G.","Griffiths, R.I.","Griffiths, R."],"keyword":["soil","Soil sampling","Grassland microbes","Soil chemical analyses","Soil biological analyses","Soil functional analyses","Soil physical analyses","Soil functions"],"keywordsOther":["soil","Soil sampling","Grassland microbes","Soil chemical analyses","Soil biological analyses","Soil functional analyses","Soil physical analyses","Soil functions"],"licence":"Open government licence","lineage":"This dataset encompasses metadata and measurements from an experiment imposing four different climatic disturbances to soils collected from 30 European grassland sites, covering a wide range of soil types and climatic conditions. Under controlled lab conditions, samples of each soil were subjected to either a two-week drought (10% Water Holding Capacity (WHC)), flooding (100% WHC), freezing (-20°C), or heatwave (35°C), alongside a control treatment, followed by a month of recovery. We assessed the response of microbial communities at the end of the disturbance, and one day, one week, and four weeks after ending the disturbance, by whole-genome metagenomic, bacterial and fungal sequencing. We assessed soil functioning by measuring microbial enzymatic activities, substrate-induced respiration profiles, and carbon and nitrogen fluxes. The dataset contains detailed information on initial sites sampled, treatments imposed, measurements recorded as well as European Nucleotide Archive accession numbers for the molecular data produced.","locations":["POLYGON((-5.5 40, -5.5 61.5, 29.5 61.5, 29.5 40, -5.5 40))"],"orcid":["https://orcid.org/0000-0002-6822-8883","https://orcid.org/0000-0001-9815-4267","https://orcid.org/0000-0002-3341-4547"],"organisation":["University of Amsterdam","University of Manchester","Bangor university","Bangor University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/4ff83dca-b836-469c-864d-69a34ff904f9","10.5285/4ff83dca-b836-469c-864d-69a34ff904f9"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Manchester"],"ror":["https://ror.org/027m9bs27","https://ror.org/04xw4m193"],"state":"published","title":"Physical, chemical and biological properties of European grassland soils subjected to laboratory climatic disturbance","version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset comprises soil and environmental data for multiple European grassland soil samples which had been subjected to multiple climatic disturbances in the laboratory (including temporal responses to heat, freezing, flooding and drought). The data include information..."},{"publicationDate":"2022-02-16T00:00:00.000+00:00","authorAffiliation":["University of Manchester","Edge Hill University"],"authorGivenName":["David","F. "],"authorFamilyName":["Johnson","Voller"],"authorFullName":["Johnson, D.","Voller, F."],"authorOrcid":["https://orcid.org/0000-0003-2299-2525"],"authorRor":["https://ror.org/027m9bs27","https://ror.org/028ndzd53"],"catalogue":"eidc","description":"Dataset contains biomass and growth rates of ectomycorrhizal fungal species on different types of growth media in response to organic and inorganic nutrient additions. The fungi used were Laccaria bicolor (lb101B), Laccaria amethystina (la56), Paxillus involutus (Pi47), Piloderma byssinium (PbUP185), Suillus bovinus O96, Suillus viscidus (Sv171), and Suillus viscidus (SvAFST1). The diameter of fungal colonies was measured daily using a ruler over a 57 day period. Biomass was determined by removing the fungal mycelia, freeze-drying it and weighing on a microbalance.","documentType":"GEMINI_DOCUMENT","identifier":"8eb1b693-8f56-4d97-b42d-f2c206dd33c0","incomingCitationCount":0,"givenName":["David","F. "],"familyName":["Johnson","Voller"],"fullName":["Johnson, D.","Voller, F."],"keyword":["Ectomycorrhizal fungi","pure culture","nutrients"],"keywordsOther":["Ectomycorrhizal fungi","pure culture","nutrients"],"licence":"Open government licence","lineage":"Fungal isolates sub-cultured onto agar plates that contained different nutrient compositions. 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