{"numFound":26,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CUniversity+of+Oxford","nextPage":"http://catalogue.ceh.ac.uk/eidc/documents?page=2&facet=rightsHolder%7CUniversity+of+Oxford","results":[{"publicationDate":"2024-08-19T00:00:00.000+00:00","authorAffiliation":["University of Southampton","SUNY Cortland","University of Oxford","Water Resources Associates","University of Hull","Can Tho University","Southern Institute of Water Resources Research"],"authorGivenName":["P.G.","L.","G.","H.E.","S.E.","R.","H.","C.","V."],"authorFamilyName":["Whitehead","Jin","Bussi","Voepel","Darby","Vasilopoulos","Manley","Rodda","Hutton","Hackney","Pham Dang Tri","Nguyen Nghia"],"authorFullName":["Whitehead, P.G.","Jin, L.","Bussi, G.","Voepel, H.E.","Darby, S.E.","Vasilopoulos, G.","Manley, R.","Rodda, H.","Hutton, C.","Hackney, C.","Pham Dang Tri, V.","Nguyen Nghia, H."],"authorOrcid":["https://orcid.org/0000-0001-6498-043X","https://orcid.org/0000-0001-6855-9562","https://orcid.org/0000-0001-5732-8080","https://orcid.org/0000-0001-7375-1460","https://orcid.org/0000-0001-8778-4394","https://orcid.org/0000-0003-1519-3442","https://orcid.org/0000-0002-5896-756X","https://orcid.org/0000-0001-5390-9136","https://orcid.org/0000-0002-2989-2001","https://orcid.org/0000-0001-9514-7053"],"authorRor":["https://ror.org/01ryk1543","https://ror.org/05a4pj207","https://ror.org/052gg0110","https://ror.org/04nkhwh30","https://ror.org/0071qz696"],"catalogue":"eidc","description":"Water quality modelled outputs for daily channel discharge and depth, nitrate-N, ammonium-N, suspended sediment concentration, total phosphorus, and soluble reactive phosphorus for the Mekong River basin.  Baseline models for P and N were calibrated over 1998 to 2017.  Predictions spanning 2018 to 2098 were modelled based on eight scenarios (2 climate x 2 socioeconomic x 2 population).  \n\nPlease see Whitehead et al (2019) https://doi.org/10.1016/j.scitotenv.2019.03.315 for details.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S002847/1"],"identifier":"710fc65c-87eb-4932-9d8e-dc8328742232","incomingCitationCount":0,"givenName":["P.G.","L.","G.","H.E.","S.E.","R.","H.","C.","V."],"familyName":["Whitehead","Jin","Bussi","Voepel","Darby","Vasilopoulos","Manley","Rodda","Hutton","Hackney","Pham Dang Tri","Nguyen Nghia"],"fullName":["Whitehead, P.G.","Jin, L.","Bussi, G.","Voepel, H.E.","Darby, S.E.","Vasilopoulos, G.","Manley, R.","Rodda, H.","Hutton, C.","Hackney, C.","Pham Dang Tri, V.","Nguyen Nghia, H."],"keyword":["Mekong River Basin","sediment","soil nutrients","water quality","rice agriculture","nitrate","phosphorous","Hydrology","phosphorus"],"keywordsTheme":["Hydrology"],"keywordsOther":["sediment","rice agriculture","water quality","nitrate","phosphorus","soil nutrients"],"licence":"Open government licence","lineage":"Data are modelled outputs from the integrated catchment (INCA) models, INCA-N for nitrate related water quality, and INCA-P for phosphorus related water quality.  Please see supporting documentation for details.  ","locations":["POLYGON((95.591 8.446, 95.591 34.191, 109.447 34.191, 109.447 8.446, 95.591 8.446))"],"orcid":["https://orcid.org/0000-0001-6498-043X","https://orcid.org/0000-0001-6855-9562","https://orcid.org/0000-0001-5732-8080","https://orcid.org/0000-0001-7375-1460","https://orcid.org/0000-0001-8778-4394","https://orcid.org/0000-0003-1519-3442","https://orcid.org/0000-0002-5896-756X","https://orcid.org/0000-0001-5390-9136","https://orcid.org/0000-0002-2989-2001","https://orcid.org/0000-0001-9514-7053"],"organisation":["University of Southampton","SUNY Cortland","University of Oxford","Water Resources Associates","University of Hull","Can Tho University","Southern Institute of Water Resources Research","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/710fc65c-87eb-4932-9d8e-dc8328742232","10.5285/710fc65c-87eb-4932-9d8e-dc8328742232"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Southampton","University of Oxford"],"ror":["https://ror.org/01ryk1543","https://ror.org/05a4pj207","https://ror.org/052gg0110","https://ror.org/04nkhwh30","https://ror.org/0071qz696","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Whitehead, P.G., Jin, L., Bussi, G., Voepel, H.E., Darby, S.E., Vasilopoulos, G., Manley, R., Rodda, H., Hutton, C., Hackney, C., Pham Dang Tri, V., & Hung, N.N. (2019). Water quality modelling of the Mekong River basin: Climate change and socioeconomics drive flow and nutrient flux changes to the Mekong Delta. Science of The Total Environment, 673, 218-229"],"title":"Modelled and projected daily channel discharge, depth and water chemistry characteristics for 24 Mekong River basin subcatchments using the Integrated Catchment (INCA) model","topic":["0/Hydrology/"],"version":1.0,"view":["public","dgwr"],"shortenedDescription":"Water quality modelled outputs for daily channel discharge and depth, nitrate-N, ammonium-N, suspended sediment concentration, total phosphorus, and soluble reactive phosphorus for the Mekong River basin.  Baseline models for P and N were calibrated over 1998 to 2017...."},{"publicationDate":"2021-05-11T00:00:00.000+00:00","authorAffiliation":["Department of Plant Sciences, University of Oxford","Department of Zoology, University of Oxford","Department of Life Sciences, University of Manchester","Department of Applied Sciences, University of West England","Trees for Life"],"authorGivenName":["E.","O.T.","A.","N.","R.","D."],"authorFamilyName":["Warner","Lewis","Hector","Brown","Green","Savory","Gilbert","McDonnell"],"authorFullName":["Warner, E.","Lewis, O.T.","Hector, A.","Brown, N.","Green, R.","Savory, A.","Gilbert, D.","McDonnell, A."],"authorOrcid":["https://orcid.org/0000-0003-2236-9725","https://orcid.org/0000-0001-7935-6111","https://orcid.org/0000-0002-1309-7716","https://orcid.org/0000-0002-9955-7858","https://orcid.org/0000-0002-2147-9087"],"catalogue":"eidc","description":"Plant and carabid beetle survey data was collected in the summer of 2018 and bird survey data in the summer of 2019 in Glen Affric and Glen Moriston in the Scottish Highlands.  Data was collected using a 10 × 10 m plot in each reforestation site for plants and carabid beetles and a 50 m radius plot for birds. The same data was collected in a matched plot in an unforested, grazed area associated with each site and in a matched plot in an unforested area within the fenced site. Five pairs of plots were established in grazed and ungrazed mature Caledonian pineforest, the target of reforestation, to assess the value of the reforestation sites for biodiversity, relative to the unforested state and the target habitat.","documentType":"GEMINI_DOCUMENT","identifier":"d31bcee5-736b-4aed-bda2-c11cacd5dfc7","incomingCitationCount":0,"givenName":["E.","O.T.","A.","N.","R.","D."],"familyName":["Warner","Lewis","Hector","Brown","Green","Savory","Gilbert","McDonnell"],"fullName":["Warner, E.","Lewis, O.T.","Hector, A.","Brown, N.","Green, R.","Savory, A.","Gilbert, D.","McDonnell, A."],"keyword":["Glen Affric","Glen Moriston ","Biodiversity","carabid beetles","Caledonian pineforest"],"keywordsPlace":["Glen Affric","Glen Moriston "],"keywordsTheme":["Biodiversity"],"keywordsOther":["carabid beetles","Caledonian pineforest"],"licence":"Open government licence","lineage":"The sampling design is hierarchical. Sites are the fourteen focal reforestation sites, all sites have associated unforested areas and three sites have associated mature forest. Plots (10 × 10 m for plants and carabids, 50 m radius for birds) were established in each treatment combination, bird surveys were conducted at a subset of ten of the fourteen reforestation sites.\n\nPlants were surveyed in each plot using three randomly placed 1 × 1 m quadrats in each plot, the percentage cover of each species was recorded using the DOMIN scale. Carabid beetles were surveyed using six pitfall traps were set per plot, with two traps associated with the location of each plant survey quadrat. Two bird surveys were conducted per plot during different date intervals. All surveys were conducted between 6:00 am and 11.30 am. Surveys were conducted for 15 minutes, after a two minute settling period. Birds were identified visually or by songs/calls.","locations":["POLYGON((-5.23 57.208, -5.23 57.287, -4.726 57.287, -4.726 57.208, -5.23 57.208))"],"orcid":["https://orcid.org/0000-0003-2236-9725","https://orcid.org/0000-0001-7935-6111","https://orcid.org/0000-0002-1309-7716","https://orcid.org/0000-0002-9955-7858","https://orcid.org/0000-0002-2147-9087"],"organisation":["Department of Plant Sciences, University of Oxford","Department of Zoology, University of Oxford","Department of Life Sciences, University of Manchester","Department of Applied Sciences, University of West England","Trees for Life","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre","University of Oxford"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/d31bcee5-736b-4aed-bda2-c11cacd5dfc7","10.5285/d31bcee5-736b-4aed-bda2-c11cacd5dfc7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford","Trees for Life"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Plant species cover and carabid beetle species counts, 2018, and bird species counts, 2019, in native reforestation, unforested and mature forest areas in the Scottish Highlands","topic":["0/Biodiversity/"],"version":1.0,"view":["public","matnic"],"shortenedDescription":"Plant and carabid beetle survey data was collected in the summer of 2018 and bird survey data in the summer of 2019 in Glen Affric and Glen Moriston in the Scottish Highlands.  Data was collected using a 10 × 10 m plot in each reforestation site for plants and carabid..."},{"publicationDate":"2022-03-07T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["K.B.","J.A.","K.","S.","E.F.","B."],"authorFamilyName":["Beck","Firth","McMahon","Croft","Cole","Sheldon"],"authorFullName":["Beck, K.B.","Firth, J.A.","McMahon, K.","Croft, S.","Cole, E.F.","Sheldon, B."],"authorOrcid":["https://orcid.org/0000-0002-5027-0207","https://orcid.org/0000-0001-7183-4115","https://orcid.org/0000-0002-2689-946X","https://orcid.org/0000-0002-5240-7828"],"authorRor":["https://ror.org/052gg0110"],"catalogue":"eidc","description":"This dataset contains information about the recordings of great tits, blue tits, marsh tits and nuthatches discovering novel food patches in relation to manipulated local population densities (see 1a4dcbb3-c4fb-4bd4-acb3-d03932de9323). Prior to and during the density manipulation experiment, novel feeders were placed at random locations and the discovery of these was recorded using a Passive Integrated Transponder (PIT) tag attached to each bird and the information recorded using a Radio Frequency Identification (RFID) antenna within the feeder. The experiment took place in Wytham Woods, Oxfordshire, UK between January and March 2021, as part of a study on the effects of ecological factors on social structure and information transmission. Data collection was performed by Keith McMahon, Sam Croft and Kristina Beck. The work was supported by the Natural Environment Research Council (Grant NE/S010335/1), The ecology of behavioural contagion in natural systems. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S010335/1"],"identifier":"e250ae89-2e1f-4664-9092-5a8593d50fdf","incomingCitationCount":0,"givenName":["B.","K.B.","J.A.","K.","S.","E.F."],"familyName":["Sheldon","Beck","Firth","McMahon","Croft","Cole"],"fullName":["Sheldon, B.","Beck, K.B.","Firth, J.A.","McMahon, K.","Croft, S.","Cole, E.F."],"keyword":["Animal behaviour","ornithology","experiment","patch discovery"],"keywordsTheme":["Animal behaviour"],"keywordsOther":["ornithology","experiment","patch discovery"],"licence":"Open government licence","lineage":"Automated bird feeders were used to collect the described data. Each of the feeders had one access hole with a clear flap and an inbuilt Radio Frequency Identification (RFID) antenna within the perch. All birds equipped with a Passive Integrated Transponder (PIT) tag that landed on the perch were recorded, and the time and date of visits stored on a secure digital (SD) card. Feeders were visited every two to three days, to refill food, check feeder performance and collect data. For the final dataset, erroneous recordings (e.g. entries with a wrong date or tag number) were removed. Data are provided as comma separated value file for deposit into the EIDC.","locations":["POLYGON((-1.347 51.762, -1.347 51.781, -1.316 51.781, -1.316 51.762, -1.347 51.762))"],"orcid":["https://orcid.org/0000-0002-5240-7828","https://orcid.org/0000-0002-5027-0207","https://orcid.org/0000-0001-7183-4115","https://orcid.org/0000-0002-2689-946X"],"organisation":["University of Oxford","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e250ae89-2e1f-4664-9092-5a8593d50fdf","10.5285/e250ae89-2e1f-4664-9092-5a8593d50fdf"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/04xw4m193"],"state":"published","title":"Recordings of the discovery of novel food patches in common woodland birds in Wytham Woods, Oxfordshire, UK 2021","topic":["0/Animal behaviour/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"This dataset contains information about the recordings of great tits, blue tits, marsh tits and nuthatches discovering novel food patches in relation to manipulated local population densities (see 1a4dcbb3-c4fb-4bd4-acb3-d03932de9323). Prior to and during the density..."},{"publicationDate":"2021-09-29T00:00:00.000+00:00","authorAffiliation":["University of Oxford","University of Manchester","Trees for Life"],"authorGivenName":["E.","O.T.","A.","N.","R.","D."],"authorFamilyName":["Warner","Lewis","Hector","Brown","Green","Gilbert","McDonnell"],"authorFullName":["Warner, E.","Lewis, O.T.","Hector, A.","Brown, N.","Green, R.","Gilbert, D.","McDonnell, A."],"authorOrcid":["https://orcid.org/0000-0003-2236-9725","https://orcid.org/0000-0001-7935-6111","https://orcid.org/0000-0002-1309-7716","https://orcid.org/0000-0002-9955-7858","https://orcid.org/0000-0002-2147-9087"],"catalogue":"eidc","description":"Ecosystem functions (including aboveground carbon, topsoil carbon, topsoil nitrogen, decomposition rates, soil invertebrate feeding, tree regeneration & vegetation structure) in woodland creation sites and unforested and mature forest areas in the Scottish Highlands.","documentType":"GEMINI_DOCUMENT","identifier":"b76223dd-28ae-4b0e-acd3-3b2104eaae0c","incomingCitationCount":1,"givenName":["Emily","E.","O.T.","A.","N.","R.","D."],"familyName":["Warner","Lewis","Hector","Brown","Green","Gilbert","McDonnell"],"fullName":["Warner, E.","Lewis, O.T.","Hector, A.","Brown, N.","Green, R.","Gilbert, D.","McDonnell, A."],"keyword":["Scottish Highlands","Ecosystem function","forest expansion","woodland creation","vegetation","soil","carbon","reforestation","decomposition","nitrogen","invertebrate","regeneration","tree"],"keywordsPlace":["Scottish Highlands"],"keywordsOther":["Ecosystem function","forest expansion","woodland creation","vegetation","soil","carbon","reforestation","decomposition","nitrogen","invertebrate","regeneration","tree"],"licence":"Open government licence","lineage":"Fieldwork to establish this dataset was carried out during June-August 2018.\n\nData were collected in 10×10m survey plots, with a focal plot in 14 ungrazed woodland creation sites, matched to grazed and ungrazed unforested plots. Data were collected in a further 5 pairs of grazed and ungrazed plots in the target habitat (Caledonian pinewood).\n\nAboveground tree carbon was calculated using allometric equations based on dbh (diameter at breast height) measured in the field in July 2018.\n\nTopsoil carbon and nitrogen was calculated based on soil sampling during July 2018. Percentage carbon and nitrogen were analysed at Forest Research’s labs. Total carbon and nitrogen were calculated based on % C/N and bulk density.\n\nDecomposition rates were calculated using the Teabag Index, teabags were buried in June and reclaimed 3 months later in August.\n\nSoil invertebrate feeding was monitored using bait lamina, which were buried for 30 days from early June to early July.\n\nVegetation structure (shrub height and moss depth) and seedling regeneration were measured in the field during June and July 2018.","locations":["POLYGON((-5.23 57.2, -5.23 57.314, -4.726 57.314, -4.726 57.2, -5.23 57.2))"],"orcid":["https://orcid.org/0000-0003-2236-9725","https://orcid.org/0000-0001-7935-6111","https://orcid.org/0000-0002-1309-7716","https://orcid.org/0000-0002-9955-7858","https://orcid.org/0000-0002-2147-9087"],"organisation":["University of Oxford","University of Manchester","Trees for Life","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b76223dd-28ae-4b0e-acd3-3b2104eaae0c","10.5285/b76223dd-28ae-4b0e-acd3-3b2104eaae0c"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford","Trees for Life"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Soil and vegetation ecological function data in native reforestation, unforested and mature forest plots in the Scottish Highlands, 2018","version":1.0,"view":["public","jualob"],"shortenedDescription":"Ecosystem functions (including aboveground carbon, topsoil carbon, topsoil nitrogen, decomposition rates, soil invertebrate feeding, tree regeneration & vegetation structure) in woodland creation sites and unforested and mature forest areas in the Scottish Highland..."},{"publicationDate":"2023-12-14T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["T.W."],"authorFamilyName":["Scott"],"authorFullName":["Scott, T.W."],"authorOrcid":["https://orcid.org/0000-0002-5941-3905"],"catalogue":"eidc","description":"This code: (1) Generates equilibrium genotype frequency values. This is provided in the \"Script_to_generate_equilibrium_genotype_frequencies.m\" script. (2) Tests our relatedness expression with simulated data. This is provided in the \"Comparison_of_simulated_and_expected_relatedness.m\" script. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"07af78a7-4022-43b1-b85f-b31caf596362","incomingCitationCount":0,"givenName":["T.W."],"familyName":["Scott"],"fullName":["Scott, T.W."],"keyword":["Social evolution","Evolutionary theory"],"keywordsOther":["Social evolution","Evolutionary theory"],"licence":"Open government licence","lineage":"This came into existence through the process of writing code for MATLAB, to numerically solve equations in the paper: \"Is cooperation favoured by horizontal gene transfer?\".","orcid":["https://orcid.org/0000-0002-5941-3905"],"organisation":["University of Oxford","NERC EDS Environmental Information Data Centre"],"recordType":"Model code","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/07af78a7-4022-43b1-b85f-b31caf596362","10.5285/07af78a7-4022-43b1-b85f-b31caf596362"],"resourceStatus":"Available","resourceType":"Application","rightsHolder":["University of Oxford"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Code for generating equilibrium genotype frequency values, and checking the analytical relatedness expression with simulation","version":1.0,"view":["public","matnic"],"shortenedDescription":"This code: (1) Generates equilibrium genotype frequency values. This is provided in the \"Script_to_generate_equilibrium_genotype_frequencies.m\" script. (2) Tests our relatedness expression with simulated data. This is provided in the \"Comparison_of_simulated_and_expected_relatedness.m\"..."},{"publicationDate":"2022-04-13T00:00:00.000+00:00","authorAffiliation":["University of Oxford","State University of New York Downstate"],"authorGivenName":["D.F.","K. "],"authorFamilyName":["Erezyilmaz","Lu"],"authorFullName":["Erezyilmaz, D.F.","Lu, K."],"authorOrcid":["https://orcid.org/0000-0001-8416-8561"],"authorRor":["https://ror.org/052gg0110","https://ror.org/01q1z8k08"],"catalogue":"eidc","description":"The data resource contains Drosophila simulans backcross female mate choice (phenotype) aligned with whole-genome genotypes of 784 female backcross progeny. The data were generated in a laboratory at Stony Brook University, New York and each test was conducted in 28.5 x 95mm plastic vials. Phenotype data was collected in 2015 and the final analysis was completed in 2021. Illumina libraries were sequenced at University of Oregon G3 Genomics Center, and the multiplexed shotgun genotyping (MSG) software was run at Janelia Research Campus, Virginia. The experiments were conducted to align the genotype of females with behavioural phenotype, female preference. Three test females were allowed to choose from three males of either species. ‘Choice’ was determined by copulation, and the species of ‘chosen’ male was recorded before gDNA was extracted from the female.\n\nStandard molecular biology was used to generate Illumina libraries from individual backcross females for sequencing. Deniz Erezyilmaz was responsible for data collection and interpretation. Those genomes with incomplete or inconsistent genomes due to sparse reads/coverage were eliminated from the analysis.\n\nThe research was funded through NERC grant NE/S010351/1. Investigating the dual role of mate choice genes in behavioural isolation and hybridization.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S010351/1"],"identifier":"8dde3529-1cf7-4b0f-907d-a1631f38afd7","incomingCitationCount":1,"givenName":["Deniz","D.F.","K. "],"familyName":["Erezyilmaz","Lu"],"fullName":["Erezyilmaz, D.","Erezyilmaz, D.F.","Lu, K."],"keyword":["QTL analysis","Assortative Hybridization","Quantitative trait locus (QTL) analysis","hybridisation","speciation","assortative mating","Drosophila simulans"],"keywordsOther":["QTL analysis","Assortative Hybridization","Quantitative trait locus (QTL) analysis","hybridisation","speciation","assortative mating","Drosophila simulans"],"licence":"Open government licence","lineage":"The Drosophila simulans backcross genotypes were obtained by Multiplexed Shotgun Genotyping (Andolfatto et al, 2011), and the files were thinned using David Stern’s (Janelia Research Campus) script, pull_thin (Github) were obtained by two-choice assay, females choosing between D. simulans and D. sechellia males. \n\nStandard molecular biology was used to generate Illumina libraries from individual backcross females for sequencing., as described in Andolfatto, P., Davison, D., Erezyilmaz, D., Hu, T.T., Mast, J., Sunayama-Morita, T., & Stern, D.L. (2011). Multiplexed shotgun genotyping for rapid and efficient genetic mapping. In Genome Research (Vol. 21, Issue 4, pp. 610–617). Cold Spring Harbor Laboratory.  https://doi.org/10.1101/gr.115402.110","orcid":["https://orcid.org/0000-0001-8416-8561"],"organisation":["University of Oxford","State University of New York Downstate","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8dde3529-1cf7-4b0f-907d-a1631f38afd7","10.5285/8dde3529-1cf7-4b0f-907d-a1631f38afd7"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/01q1z8k08","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Andolfatto, P., Davison, D., Erezyilmaz, D., Hu, T.T., Mast, J., Sunayama-Morita, T., & Stern, D.L. (2011). Multiplexed shotgun genotyping for rapid and efficient genetic mapping. In Genome Research (Vol. 21, Issue 4, pp. 610–617). Cold Spring Harbor Laboratory."],"title":"Genotype-phenotype association for mate choice in progeny of Drosophila simulans backcross","version":1.0,"view":["public","danor"],"shortenedDescription":"The data resource contains Drosophila simulans backcross female mate choice (phenotype) aligned with whole-genome genotypes of 784 female backcross progeny. The data were generated in a laboratory at Stony Brook University, New York and each test was conducted in 28.5..."},{"publicationDate":"2020-08-28T00:00:00.000+00:00","authorAffiliation":["University of Oxford","Queen Mary University of London","James Cook University","Institute of Entomology, Biology Centre of the Czech Academy of Sciences","University of Bristol","University College London"],"authorGivenName":["C.T.","J.C.D.","M.","A.","H.","J.J.","C-H.","E.K. ","J.","O.T. "],"authorFamilyName":["Jeffs","Terry","Higgie","Jandová","Konvičková","Brown","Lue","Schiffer","O'Brien","Bridle","Hrček","Lewis"],"authorFullName":["Jeffs, C.T.","Terry, J.C.D.","Higgie, M.","Jandová, A.","Konvičková, H.","Brown, J.J.","Lue, C.","Schiffer, M.","O'Brien, E.K.","Bridle, J.","Hrček, J.","Lewis, O.T."],"authorOrcid":["https://orcid.org/0000-0002-0626-9938","https://orcid.org/0000-0002-2397-0240","https://orcid.org/0000-0002-3608-6745","https://orcid.org/0000-0002-5203-2480","https://orcid.org/0000-0001-5145-7340","https://orcid.org/0000-0003-0711-6447","https://orcid.org/0000-0001-7935-6111"],"authorRor":["https://ror.org/052gg0110","https://ror.org/026zzn846","https://ror.org/04gsp2c11","https://ror.org/039nazg33","https://ror.org/0524sp257","https://ror.org/02jx3x895"],"catalogue":"eidc","description":"The dataset contains records of Drosophila flies and associated parasitic wasps collected along two elevational (temperature) gradients from Australian rainforest site. The data is presented at the individual Drosophila pupae level. It describes patterns of parasitism levels from fourteen sites and the structure of quantitative food webs at six sites. Also included are temperature records from each site.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/N010221/1 "],"identifier":"85657c4c-54c9-4d02-a262-455ea1c38d95","incomingCitationCount":1,"givenName":["J.C.D.","C.T.","M.","A.","H.","J.J.","C-H.","E.K. ","J.","O.T. "],"familyName":["Terry","Jeffs","Higgie","Jandová","Konvičková","Brown","Lue","Schiffer","O'Brien","Bridle","Hrček","Lewis"],"fullName":["Terry, J.C.D.","Jeffs, C.T.","Higgie, M.","Jandová, A.","Konvičková, H.","Brown, J.J.","Lue, C.","Schiffer, M.","O'Brien, E.K.","Bridle, J.","Hrček, J.","Lewis, O.T."],"keyword":["Areotetes striatiferus","Asobara sp.","Braconidae sp.","Chalcidoidea sp.","Diapriidae sp.","Drosophila bipectinata","Drosophila birchii","Drosophila bunnanda","Drosophila immigrans","Drosophila ironensis","Drosophila pallidifrons","Drosophila pandora","Drosophila pseudoananassae","Drosophila pseudotakahashii","Drosophila rubida","Drosophila simulans","Drosophila sulfurigaster","Ganaspis sp.","Kleidotoma sp.","Leptopilina boulardi","Leptopilina sp","Pachycrepoideus vindemmiae","Pteromalidae sp.","Scaptodrosophila sp.","Leptolamina sp.","Leptopilina sp."],"keywordsOther":["Areotetes striatiferus","Asobara sp.","Braconidae sp.","Chalcidoidea sp.","Diapriidae sp.","Drosophila bipectinata","Drosophila birchii","Drosophila bunnanda","Drosophila immigrans","Drosophila ironensis","Drosophila pallidifrons","Drosophila pandora","Drosophila pseudoananassae","Drosophila pseudotakahashii","Drosophila rubida","Drosophila simulans","Drosophila sulfurigaster","Ganaspis sp.","Kleidotoma sp.","Leptopilina boulardi","Leptopilina sp","Pachycrepoideus vindemmiae","Pteromalidae sp.","Scaptodrosophila sp.","Leptolamina sp.","Leptopilina sp."],"licence":"Open government licence","lineage":"All samples were collected and identified by the authors. Host pupae were collected using replicated baited bottle traps at each site. Species were identified using a combination of multiplex PCR, DNA metabarcoding and Sanger sequencing described in the associated paper (https://doi.org/10.1101/2020.07.21.213678), with reference to morphologically identified voucher specimens collected from the same site.","locations":["POLYGON((145.792 -19.014, 145.792 -18.195, 146.291 -18.195, 146.291 -19.014, 145.792 -19.014))"],"orcid":["https://orcid.org/0000-0002-0626-9938","https://orcid.org/0000-0002-2397-0240","https://orcid.org/0000-0002-3608-6745","https://orcid.org/0000-0002-5203-2480","https://orcid.org/0000-0001-5145-7340","https://orcid.org/0000-0003-0711-6447","https://orcid.org/0000-0001-7935-6111"],"organisation":["Queen Mary University of London","University of Oxford","James Cook University","Institute of Entomology, Biology Centre of the Czech Academy of Sciences","University of Bristol","University College London","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/85657c4c-54c9-4d02-a262-455ea1c38d95","10.5285/85657c4c-54c9-4d02-a262-455ea1c38d95"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/026zzn846","https://ror.org/052gg0110","https://ror.org/04gsp2c11","https://ror.org/039nazg33","https://ror.org/0524sp257","https://ror.org/02jx3x895","https://ror.org/04xw4m193"],"state":"published","title":"Drosophila-parasitoid interactions along an elevation gradient in an Australian rainforest, 2016","version":1.0,"view":["public","margla"],"shortenedDescription":"The dataset contains records of Drosophila flies and associated parasitic wasps collected along two elevational (temperature) gradients from Australian rainforest site. The data is presented at the individual Drosophila pupae level. It describes patterns of parasitism..."},{"publicationDate":"2022-02-24T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["K.B.","J.A.","K.","S.","E.F.","B."],"authorFamilyName":["Beck","Firth","McMahon","Croft","Cole","Sheldon"],"authorFullName":["Beck, K.B.","Firth, J.A.","McMahon, K.","Croft, S.","Cole, E.F.","Sheldon, B."],"authorOrcid":["https://orcid.org/0000-0002-5027-0207","https://orcid.org/0000-0001-7183-4115","https://orcid.org/0000-0002-2689-946X","https://orcid.org/0000-0002-5240-7828"],"authorRor":["https://ror.org/052gg0110"],"catalogue":"eidc","description":"This dataset contains information about local population densities of great tits, blue tits, marsh tits and nuthatches from a manipulation experiment. The time, location and bird species were recorded using a Passive Integrated Transponder (PIT) tag attached to each bird and the information recorded using a Radio Frequency Identification (RFID) antenna within the feeder. Population density was manipulated by programming automated feeders to only open for a specific set of individuals (creating low- and high-density treatments). Local population densities were recorded using automated bird feeders at six experimental and two control sites prior to and during the manipulation. The experiment took place in Wytham Woods, Oxfordshire, UK between January and March 2021, as part of a study on the effects of ecological factors on social structure and information transmission. The work was supported by the Natural Environment Research Council (Grant NE/S010335/1, The ecology of behavioural contagion in natural systems.)","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S010335/1"],"identifier":"1a4dcbb3-c4fb-4bd4-acb3-d03932de9323","incomingCitationCount":0,"givenName":["K.B.","J.A.","K.","S.","E.F.","B."],"familyName":["Beck","Firth","McMahon","Croft","Cole","Sheldon"],"fullName":["Beck, K.B.","Firth, J.A.","McMahon, K.","Croft, S.","Cole, E.F.","Sheldon, B."],"keyword":["Animal behaviour","ornithology","population density"],"keywordsTheme":["Animal behaviour"],"keywordsOther":["ornithology","population density"],"licence":"Open government licence","lineage":"Automated bird feeders were used to collect the described data. Each of the feeders had one access hole with a clear flap and an inbuilt Radio Frequency Identification (RFID) antenna within the perch. All birds equipped with a Passive Integrated Transponder (PIT) tag that landed on the perch got recorded, and the time and date of visits stored on a Secure Digital (SD) card. The flap can be programmed to open only for specified PIT tagged individuals. This allowed us to manipulate local densities by specifically restricting access to each feeder. Feeders were visited every two to three days, to refill food, check feeder performance and collect data. For the final dataset, erroneous recordings (e.g. entries with a wrong date or tag number) were removed. Data are provided as comma separated value files for deposit into the EIDC.   ","locations":["POLYGON((-1.349 51.759, -1.349 51.785, -1.317 51.785, -1.317 51.759, -1.349 51.759))"],"orcid":["https://orcid.org/0000-0002-5027-0207","https://orcid.org/0000-0001-7183-4115","https://orcid.org/0000-0002-2689-946X","https://orcid.org/0000-0002-5240-7828"],"organisation":["University of Oxford","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1a4dcbb3-c4fb-4bd4-acb3-d03932de9323","10.5285/1a4dcbb3-c4fb-4bd4-acb3-d03932de9323"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/04xw4m193"],"state":"published","title":"Local population density of woodland birds from a manipulation experiment in Wytham Woods, Oxfordshire, UK 2021","topic":["0/Animal behaviour/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"This dataset contains information about local population densities of great tits, blue tits, marsh tits and nuthatches from a manipulation experiment. The time, location and bird species were recorded using a Passive Integrated Transponder (PIT) tag attached to each..."},{"publicationDate":"2022-04-13T00:00:00.000+00:00","authorAffiliation":["University of Oxford","State University of New York"],"authorGivenName":["D.F.","K."],"authorFamilyName":["Erezyilmaz","Lu"],"authorFullName":["Erezyilmaz, D.F.","Lu, K."],"authorOrcid":["https://orcid.org/0000-0001-8416-8561"],"authorRor":["https://ror.org/052gg0110","https://ror.org/01q1z8k08"],"catalogue":"eidc","description":"The data resource contains Drosophila simulans-sechellia backcross female mate choice (phenotype) aligned with whole-genome genotypes of 692 female backcross progeny. The data was generated in a laboratory at Stony Brook University New York and each test was conducted in 28.5 x 95mm plastic vials. Phenotype data was collected in 2015 and the final analysis was completed in 2021. Illumina libraries were sequenced at University of Oregon G3 Genomics Center, and the multiplexed shotgun genotyping (MSG) software was run at Janelia Research Campus Virginia.\n\nThe experiments were conducted to align the genotype of females with behavioural phenotype, female preference. Three test females were allowed to choose from three males of either species. ‘Choice’ was determined by copulation, and the species of ‘chosen’ male was recorded before gDNA was extracted from the female. \n\nStandard molecular biology was used to generate Illumina libraries from individual backcross females for sequencing. Deniz Erezyilmaz was responsible for data collection and interpretation. Those genomes with ambiguous genotypes at more than 25% of markers due to sparse reads/coverage were eliminated from the analysis.\n\nThe research was funded through NERC grant NE/S010351/1. Investigating the dual role of mate choice genes in behavioural isolation and hybridization.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S010351/1"],"identifier":"871c537d-2a84-432f-8597-7e895e0ffdcb","incomingCitationCount":0,"givenName":["Deniz","D.F.","K."],"familyName":["Erezyilmaz","Lu"],"fullName":["Erezyilmaz, D.","Erezyilmaz, D.F.","Lu, K."],"keyword":["Drosophila simulans","Drosophila sechellia "],"keywordsOther":["Drosophila simulans","Drosophila sechellia "],"licence":"Open government licence","lineage":"The Drosophila simulans-sechellia backcross genotypes were obtained by Multiplexed Shotgun Genotyping (Andolfatto et al, 2011), and the files were thinned using David Stern’s (Janelia Research Campus) script, pull_thin (github.com/dstern/pull_thin) were obtained by two-choice assay, females choosing between D. simulans and D. sechellia males.\n\nStandard molecular biology was used to generate Illumina libraries from individual backcross females for sequencing, as described in: Andolfatto, P., Davison, D., Erezyilmaz, D., Hu, T.T., Mast, J., Sunayama-Morita, T., & Stern, D.L. (2011). Multiplexed shotgun genotyping for rapid and efficient genetic mapping. In Genome Research (Vol. 21, Issue 4, pp. 610–617). Cold Spring Harbor Laboratory. https://doi.org/10.1101/gr.115402.110","orcid":["https://orcid.org/0000-0001-8416-8561"],"organisation":["University of Oxford","State University of New York","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/871c537d-2a84-432f-8597-7e895e0ffdcb","10.5285/871c537d-2a84-432f-8597-7e895e0ffdcb"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/01q1z8k08","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Andolfatto, P., Davison, D., Erezyilmaz, D., Hu, T.T., Mast, J., Sunayama-Morita, T., & Stern, D.L. (2011). Multiplexed shotgun genotyping for rapid and efficient genetic mapping. In Genome Research (Vol. 21, Issue 4, pp. 610–617). Cold Spring Harbor Laboratory."],"title":"Genotype-phenotype association for mate choice in a Drosophila simulans-sechellia backcross population","version":1.0,"view":["public","danor"],"shortenedDescription":"The data resource contains Drosophila simulans-sechellia backcross female mate choice (phenotype) aligned with whole-genome genotypes of 692 female backcross progeny. The data was generated in a laboratory at Stony Brook University New York and each test was conducted..."},{"publicationDate":"2024-09-05T00:00:00.000+00:00","authorAffiliation":["University of Oxford","Aarhus University","Highlands Rewilding Ltd"],"authorGivenName":["E.","A.","J.A.","C.","P."],"authorFamilyName":["Warner","Hector","Kristensen","Brown","Whitehorn","Atkinson"],"authorFullName":["Warner, E.","Hector, A.","Kristensen, J.A.","Brown, C.","Whitehorn, P.","Atkinson, C."],"authorOrcid":["https://orcid.org/0000-0003-2236-9725","https://orcid.org/0000-0002-1309-7716","https://orcid.org/0000-0001-7168-9405"],"authorRor":["https://ror.org/052gg0110","https://ror.org/01aj84f44"],"catalogue":"eidc","description":"This dataset contains baseline soil carbon and nitrogen content within a native forest creation site on the Beldorney Estate, Aberdeenshire, Scotland. 17 samples were collected on a 100 m grid at the site prior to planting. The 100 m grid was extended into adjacent grassland that won’t be planted and 8 additional samples were collected. The 100 m grid samples were all collected in September 2022. Within the planting area 17 plots were left unplanted, these will be used to track natural tree regeneration, and additional soil samples were collected here in November 2022. Soil carbon and nitrogen content will be tracked at the site as the planted and naturally regenerating trees establish.\n\nThe work was supported by Natural Environment Research Council (NE/W004976/1) as part of the Agile Initiative at the Oxford Martin School and Leverhulme Trust as part of the Leverhulme Centre for Nature Recovery at the University of Oxford. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/W004976/1"],"identifier":"75fc1418-b0ff-4dca-9b78-70c3c82d94b7","incomingCitationCount":0,"givenName":["E.","A.","J.A.","C.","P."],"familyName":["Warner","Hector","Kristensen","Brown","Whitehorn","Atkinson"],"fullName":["Warner, E.","Hector, A.","Kristensen, J.A.","Brown, C.","Whitehorn, P.","Atkinson, C."],"keyword":["Soil","Soil carbon","soil nitrogen","native woodland planting","grassland"],"keywordsTheme":["Soil"],"keywordsOther":["Soil carbon","soil nitrogen","native woodland planting","grassland"],"licence":"Open government licence","lineage":"Soil samples were collected using an auger in September and November 2022. Samples were dried, sieved, and weighed in the lab. Subsamples of the sieved soil were ground and analysed for soil carbon and nitrogen content using an elemental analyser.","locations":["POLYGON((-2.975 57.403, -2.975 57.412, -2.962 57.412, -2.962 57.403, -2.975 57.403))"],"orcid":["https://orcid.org/0000-0003-2236-9725","https://orcid.org/0000-0002-1309-7716","https://orcid.org/0000-0001-7168-9405"],"organisation":["University of Oxford","Aarhus University","Highlands Rewilding Ltd","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/75fc1418-b0ff-4dca-9b78-70c3c82d94b7","10.5285/75fc1418-b0ff-4dca-9b78-70c3c82d94b7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford","Highlands Rewilding Ltd"],"ror":["https://ror.org/052gg0110","https://ror.org/01aj84f44","https://ror.org/04xw4m193"],"state":"published","title":"Baseline soil carbon and nitrogen content in a woodland creation experiment, Aberdeenshire, Scotland, 2022","topic":["0/Soil/"],"version":1.0,"view":["public","shar1"],"shortenedDescription":"This dataset contains baseline soil carbon and nitrogen content within a native forest creation site on the Beldorney Estate, Aberdeenshire, Scotland. 17 samples were collected on a 100 m grid at the site prior to planting. The 100 m grid was extended into adjacent..."},{"publicationDate":"2008-09-30T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["S."],"authorFamilyName":["Whatmore"],"authorFullName":["Whatmore, S."],"authorRor":["https://ror.org/052gg0110"],"catalogue":"eidc","description":"This dataset consists of computer code transcripts for two proprietary flood risk models from a study as part of the NERC Rural Economy and Land Use (RELU) programme. This project was conceived in order to address the public controversies generated by the risk management strategies and forecasting technologies associated with diffuse environmental problems such as flooding and pollution. Environmental issues play an ever-increasing role in all of our daily lives. However, controversies surrounding many of these issues, and confusion surrounding the way in which they are reported, mean that sectors of the public risk becoming increasingly disengaged. To try to reverse this trend and regain public trust and engagement, this project aimed to develop a new approach to interdisciplinary environmental science, involving non-scientists throughout the process. Examining the relationship between science and policy, and in particular how to engage the public with scientific research findings, a major diffuse environmental management issue was chosen as a focus - flooding. As part of this approach, non-scientists were recruited alongside the investigators in forming Competency Groups - an experiment in democratising science. The Competency Groups were composed of researchers and laypeople for whom flooding is a matter of particular concern. The groups worked together to share different perspectives - on why flooding is a problem, on the role of science in addressing the problem, and on new ways of doing science together. We aimed to achieve four substantive contributions to knowledge: 1. To analyse how the knowledge claims and modelling technologies of hydrological science are developed and put into practice by policy makers and commercial organisations (such as insurance companies) in flood risk management. 2. To develop an integrated model for forecasting the in-river and floodplain effects of rural land management practices. 3. To experiment with a new approach to public engagement in the production of interdisciplinary environmental science, involving the use of Competency Groups. 4. To evaluate this new approach to doing public science differently and to identify lessons learnt that can be exported beyond this particular project to other fields of knowledge controversy. This dataset consists of computer code transcripts for two proprietary flood risk models. Flood risk and modelling interview transcripts from this study are available at the UK Data Archive under study number 6620 (see online resources). Further documentation for this study may be found through the RELU Knowledge Portal and the project's ESRC funding award web page (see online resources).","documentType":"GEMINI_DOCUMENT","funder":["RELU"],"grant":["RES-227-25-0018"],"identifier":"0a385f48-9ae8-44be-af02-39fbebac1bf5","incomingCitationCount":0,"givenName":["S.","Stuart","Gillian"],"familyName":["Whatmore","Lane","Willis"],"fullName":["Whatmore, S.","Lane, S.","Willis, G."],"keyword":["Rural Economy and Land Use Programme","Understanding Environmental Knowledge Controversies: the Case for Flood Risk Management","Malton","North yorkshire","Pickering","Ryedale (district)","Academic personnel","Environmental engineering","Environmental management","Environmental policy","Floods","Land drainage","Modelling","Public opinion","Rural planning","Science policy","Specialists","Specialization","2007-2010"],"keywordsProject":["Rural Economy and Land Use Programme","Understanding Environmental Knowledge Controversies: the Case for Flood Risk Management"],"keywordsOther":["Malton","North yorkshire","Pickering","Ryedale (district)","Academic personnel","Environmental engineering","Environmental management","Environmental policy","Floods","Land drainage","Modelling","Public opinion","Rural planning","Science policy","Specialists","Specialization","2007-2010"],"licence":"Non-Open government licence","lineage":"Research funded by Economic and Social Research Council, Natural Environment Research Council and Biotechnology and Biological Sciences Research Council. Award Number: RES-224-26-0041 Development of two new models was undertaken with the basic aim of estimating the effects of rural land management measures upon downstream flood risk in two separate case studies; Pickering ('bunding' model) and Uckfield ('overflow' model). The focus of these modelling approaches was on harnessing a greater depth of the information available to the modeller than perhaps traditionally used. In addition, the model development process was steered by Competency Groups in each respective area. This collaborative process drew on three identifiable knowledge sources: 1. experiential, as held by both academics and local members of the CGs 2. theoretical and encoded to the ways in which we tend to see the world as Newtonian (e.g. flood water has to go somewhere; it must conserve mass) 3 data-based, in terms of the records of rainfall and water level that we had obtained and which were used to develop and to test assumptions The two models developed were specifically tailored to the regional flooding problem by the innovative development process.","locations":["POLYGON((-6.375 49.9, -6.375 55.82, 1.79 55.82, 1.79 49.9, -6.375 49.9))"],"organisation":["University of Oxford","Durham University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Model code","resourceIdentifier":["1414489256812","https://catalogue.ceh.ac.uk/id/0a385f48-9ae8-44be-af02-39fbebac1bf5"],"resourceStatus":"Available","resourceType":"Application","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/01v29qb04","https://ror.org/04xw4m193"],"state":"published","supplementalName":["RELU Data Archive"],"title":"Flood model scripts - RELU Understanding environmental knowledge controversies","version":1.0,"view":["public","rstu"],"shortenedDescription":"This dataset consists of computer code transcripts for two proprietary flood risk models from a study as part of the NERC Rural Economy and Land Use (RELU) programme. This project was conceived in order to address the public controversies generated by the risk management..."},{"publicationDate":"2024-11-12T00:00:00.000+00:00","authorAffiliation":["University of Oxford","Brunel University of London","Lancaster University"],"authorGivenName":["A.","K.S.","I.","T.T-H.","W.","P.","S.","J.","M.","B."],"authorFamilyName":["Yang","Ng","Thompson","Tsui","Zhang","Nair","Qiu","Ingram","Zurek","Gupta","Hasnain","Surridge"],"authorFullName":["Yang, A.","Ng, K.S.","Thompson, I.","Tsui, T.T.","Zhang, W.","Nair, P.","Qiu, S.","Ingram, J.","Zurek, M.","Gupta, B.","Hasnain, S.","Surridge, B."],"authorOrcid":["https://orcid.org/0000-0001-5974-247X"],"authorRor":["https://ror.org/052gg0110","https://ror.org/00dn4t376","https://ror.org/04f2nsd36"],"catalogue":"eidc","description":"This dataset contains the annual flow data of organic waste and nutrients (nitrogen and phosphorus) in the region of Leicester City and Leicestershire Country in the UK, for the year of 2019.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/W004976/1"],"identifier":"df329c40-cd4d-48d9-90d7-968f69df2279","incomingCitationCount":0,"givenName":["A.","K.S.","I.","T.T-H.","W.","P.","S.","J.","M.","B."],"familyName":["Yang","Ng","Thompson","Tsui","Zhang","Nair","Qiu","Ingram","Zurek","Gupta","Hasnain","Surridge"],"fullName":["Yang, A.","Ng, K.S.","Thompson, I.","Tsui, T.T.","Zhang, W.","Nair, P.","Qiu, S.","Ingram, J.","Zurek, M.","Gupta, B.","Hasnain, S.","Surridge, B."],"keyword":["Environmental risk","Environmental survey","Material Flow Analysis","organic waste","nutrient"],"keywordsTheme":["Environmental risk","Environmental survey"],"keywordsOther":["Material Flow Analysis","organic waste","nutrient"],"licence":"Open government licence","lineage":"The dataset was generated through material flow analysis (MFA), which was based on the Environment Agency’s waste flow dataset for the year of 2019.","locations":["POLYGON((-1.593 52.349, -1.593 52.975, -0.637 52.975, -0.637 52.349, -1.593 52.349))"],"orcid":["https://orcid.org/0000-0001-5974-247X"],"organisation":["University of Oxford","Brunel University of London","Lancaster University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/df329c40-cd4d-48d9-90d7-968f69df2279","10.5285/df329c40-cd4d-48d9-90d7-968f69df2279"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/00dn4t376","https://ror.org/04f2nsd36","https://ror.org/04xw4m193"],"state":"published","title":"Annual flow data of municipal organic waste and nutrients, Leicestershire, UK, 2019","topic":["0/Environmental risk/","0/Environmental survey/"],"version":1.0,"view":["public","shar1"],"shortenedDescription":"This dataset contains the annual flow data of organic waste and nutrients (nitrogen and phosphorus) in the region of Leicester City and Leicestershire Country in the UK, for the year of 2019."},{"publicationDate":"2024-12-19T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["C.A.L.","Y."],"authorFamilyName":["Dahlsjö","Malhi"],"authorFullName":["Dahlsjö, C.A.L.","Malhi, Y."],"authorOrcid":["https://orcid.org/0000-0003-3795-1523"],"authorRor":["https://ror.org/052gg0110"],"catalogue":"eidc","description":"All data were collected in 15 plots across Wytham Woods, near Oxford in southern England. The data contributed to a project on the ecological impact of ash dieback and were used to quantify the differences between habitats with varying levels of ash dieback represented by different treatments as outlined in the metadata. \nGround flora species and percentage cover collected in May between 2021–2024. \nMonthly (bi-weekly in autumn) fine litter fall data separated into categories of e.g. twigs, leaves, seeds, etc. Dry weights are available for each category along with days between sampling occasions and litter fall trap size. Data available between 2020–2024. \nLeaf litter feeding invertebrate data collected on four occasions between September–November 2022. Invertebrate wet weights are available from replicated soil pits and quadrats across 15 plots enabling both spatial and temporal analyses. \n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/T007648/1"],"identifier":"2dbbe33b-582b-434e-92f6-9c7786a37ce9","incomingCitationCount":0,"givenName":["C.A.L.","Y."],"familyName":["Dahlsjö","Malhi"],"fullName":["Dahlsjö, C.A.L.","Malhi, Y."],"keyword":["Biodiversity","invertebrates","ash dieback","ground flora","fine litter fall"],"keywordsTheme":["Biodiversity"],"keywordsOther":["invertebrates","ash dieback","ground flora","fine litter fall"],"licence":"Open government licence","lineage":"The data have gone through minimal processing. The raw data are available alongside comments and meta data for data cleaning purposes. \nGround flora data were generated through species identifications and estimates of percentage cover in nine quadrats (1m x 1m) in each plot. \nFine litter fall data were generated by identifying, drying, and weighing different litter categories. \nLeaf litter feeding invertebrate data were generated by identifying and weighing each individual in the lab following extraction from soil pits or litter quadrats. \n","locations":["POLYGON((-1.359 51.754, -1.359 51.787, -1.294 51.787, -1.294 51.754, -1.359 51.754))"],"orcid":["https://orcid.org/0000-0003-3795-1523"],"organisation":["University of Oxford","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/2dbbe33b-582b-434e-92f6-9c7786a37ce9","10.5285/2dbbe33b-582b-434e-92f6-9c7786a37ce9"],"resourceStatus":"Embargoed","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/04xw4m193"],"state":"published","title":"Woodland ground flora, fine litter fall, and leaf litter feeding invertebrate data from habitats with varying levels of ash dieback, Wytham Woods, Oxfordshire, UK, 2020-2024","topic":["0/Biodiversity/"],"version":1.0,"view":["public","katwri"],"shortenedDescription":"All data were collected in 15 plots across Wytham Woods, near Oxford in southern England. The data contributed to a project on the ecological impact of ash dieback and were used to quantify the differences between habitats with varying levels of ash dieback represented..."},{"publicationDate":"2023-02-20T00:00:00.000+00:00","authorAffiliation":["University of Oxford","University of Groningen"],"authorGivenName":["D.","N.","J.C.","S.F."],"authorFamilyName":["Erezyilmaz","Doubovetzky","Billeter","Goodwin"],"authorFullName":["Erezyilmaz, D.","Doubovetzky, N.","Billeter, J.C.","Goodwin, S.F."],"authorOrcid":["https://orcid.org/0000-0001-8416-8561","https://orcid.org/0000-0001-6219-3125","https://orcid.org/0000-0001-7796-4068","https://orcid.org/0000-0002-0552-4140"],"catalogue":"eidc","description":"This dataset provides measurements of the cuticular pheromone, 7,11-heptacosadiene of individual female vinegar flies. The purpose of the dataset is to compare the levels between two sibling species, Drosophila simulans and Drosophila sechellia. Single female virgins were isolated from males at eclosion, aged five days, and then washed in hexane to extract cuticular hydrocarbons. The extracts were analyzed by gas chromatography relative to an internal standard. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S010351/1"],"identifier":"7abe787a-4561-4715-8b49-983faa4c0787","incomingCitationCount":0,"givenName":["D.","N.","J.C.","S.F."],"familyName":["Erezyilmaz","Doubovetzky","Billeter","Goodwin"],"fullName":["Erezyilmaz, D.","Doubovetzky, N.","Billeter, J.C.","Goodwin, S.F."],"keyword":["Cuticular hydrocarbons","contact pheromone","long-chain fatty acids","Drosophila courtship","gas chromatography"],"keywordsOther":["Cuticular hydrocarbons","contact pheromone","long-chain fatty acids","Drosophila courtship","gas chromatography"],"licence":"Open government licence","lineage":"Drosophila females that were five days old were anaesthetised on ice for ten minutes. Individual female flies were then transferred to 150uL pure HPLC grade hexane within a 200uL glass vial that was fitted with a glass insert. The vial with the fly inside was vortexed to extract the hydrocarbons. Afterwards the fly was removed, the hexane extract was dried down under a gentle flow of nitrogen, and the vial was shipped to Groningen for gas chromatograph analysis. The retention time in minutes of each peak relative to an internal standard (C26), was used to measure size and identify 7,11-heptacosadiene. The area underneath each peak, relative to the standard was used to measure the quantity of 7,11-heptacosadiene. ChemStation software (Agilent technologies) was used to estimate area under the peak. ","orcid":["https://orcid.org/0000-0001-8416-8561","https://orcid.org/0000-0001-6219-3125","https://orcid.org/0000-0001-7796-4068","https://orcid.org/0000-0002-0552-4140"],"organisation":["University of Oxford","University of Groningen","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7abe787a-4561-4715-8b49-983faa4c0787","10.5285/7abe787a-4561-4715-8b49-983faa4c0787"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Levels of the pheromone 7,11-heptacosadiene in the sibling species Drosophila simulans and Drosophila sechellia","version":1.0,"view":["public","glenn"],"shortenedDescription":"This dataset provides measurements of the cuticular pheromone, 7,11-heptacosadiene of individual female vinegar flies. The purpose of the dataset is to compare the levels between two sibling species, Drosophila simulans and Drosophila sechellia. Single female virgins..."},{"publicationDate":"2025-02-24T00:00:00.000+00:00","authorAffiliation":["University of Oxford","Ludwig-Maximilians-Universität München"],"authorGivenName":["G.","L."],"authorFamilyName":["Larson","Frantz"],"authorFullName":["Larson, G.","Frantz, L."],"authorOrcid":["https://orcid.org/0000-0002-4092-0392","https://orcid.org/0000-0001-8030-3885"],"catalogue":"eidc","description":"This data set contains information on the age of Sus scrofa (pig) bones and teeth from archaeological sites in the Philippines and the Pacific Islands as estimated by AMS radiocarbon dating. Samples were selected for radiocarbon dating and palaeogenomic analysis from the following archaeological sites in the Philippines and Pacific Islands (Palau): Pamayan (Philippines), Savidug (Philippines) and Uchul a Rois (Palau). Radiocarbon dating was carried out at the Oxford Radiocarbon Accelerator Unit following published protocols. This work was supported by NERC grant NE/S00078X/1.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S00078X/1"],"identifier":"3187bfa1-6346-4569-9062-b5414ec1dd62","incomingCitationCount":0,"givenName":["G.","L."],"familyName":["Larson","Frantz"],"fullName":["Larson, G.","Frantz, L."],"keyword":["archaeology","radiocarbon dating","Sus scrofa","Southeast Asia","Pacific","Philippines ","Palau"],"keywordsOther":["archaeology","radiocarbon dating","Sus scrofa","Southeast Asia","Pacific","Philippines ","Palau"],"licence":"Non-Open government licence","lineage":"Bone and tooth samples were collected by collaborating archaeologists and sent to the PalaeoBARN for analyses: \n●\tUchul A Rois, Palau (site date range: 900-1450 AD)\n●\tPamayan, Philippines (site date range: 1420–1630 AD)\n●\tSavidug Dune Site, Philippines (600-1000 BP)\nFollowing aDNA analysis, samples were submitted to the Oxford Radiocarbon Accelerator Unit for dating analysis.\n","locations":["POLYGON((134.468 7.334, 134.468 7.367, 134.491 7.367, 134.491 7.334, 134.468 7.334))","POLYGON((121.836 20.298, 121.836 20.324, 121.851 20.324, 121.851 20.298, 121.836 20.298))","POLYGON((121.872 20.291, 121.872 20.322, 121.892 20.322, 121.892 20.291, 121.872 20.291))"],"orcid":["https://orcid.org/0000-0002-4092-0392","https://orcid.org/0000-0001-8030-3885"],"organisation":["University of Oxford","Ludwig-Maximilians-Universität München","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/3187bfa1-6346-4569-9062-b5414ec1dd62","10.5285/3187bfa1-6346-4569-9062-b5414ec1dd62"],"resourceStatus":"Embargoed","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Radiocarbon dating of Sus scrofa (pig) remains from archaeological sites in the Philippines and Pacific Islands","version":1.0,"view":["public","glenn"],"shortenedDescription":"This data set contains information on the age of Sus scrofa (pig) bones and teeth from archaeological sites in the Philippines and the Pacific Islands as estimated by AMS radiocarbon dating. Samples were selected for radiocarbon dating and palaeogenomic analysis from..."},{"publicationDate":"2021-10-28T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["M."],"authorFamilyName":["Buechel"],"authorFullName":["Buechel, M."],"authorOrcid":["https://orcid.org/0000-0002-5047-1631"],"authorRor":["https://ror.org/052gg0110"],"catalogue":"eidc","description":"Data comprise a set of broadleaf afforestation scenarios (provided as netCDF files) that may be run with the Joint UK Land Environment Simulator (JULES), a community land surface model. The scenarios are based on the CEH Land Cover 2000 classification. Afforestation takes place according to catchment structure and existing land cover.\n\nScenarios cover twelve river catchments in Great Britain: Dee, Tay, Ouse, Ure, Derwent, Thames, Avon, Tamar, Severn at Bewdley , Severn at Haw Bridge, Ribble and Clyde.\n\nAfforestation scenarios relate to two catchment properties: - (1) River network structure and (2) Land use.  By using these two catchment properties, in conjunction with different extents of afforestation, up to 288 afforestation scenarios per catchment are generated.\n\nThis dataset was created as part of the NERC doctoral training partnerships (grant number NE/L002612/1).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/L002612/1"],"identifier":"f484ff54-9139-462e-b37a-347a69f78500","incomingCitationCount":0,"givenName":["Marcus","M."],"familyName":["Buechel"],"fullName":["Buechel, M."],"keyword":["Hydrology","scenario","JULES","Avon","Clyde","Dee","Derwent","Ouse","Ribble","Severn at Haw Bridge","Tamar","Tay","Thames","Ure","CHESS-land","Severn at Bewdley","hydrology","afforestation"],"keywordsTheme":["Hydrology"],"keywordsOther":["scenario","JULES","Avon","Clyde","Dee","Derwent","Ouse","Ribble","Severn at Haw Bridge","Tamar","Tay","Thames","Ure","CHESS-land","Severn at Bewdley","hydrology","afforestation"],"licence":"Open government licence","lineage":"The data is based on the UKCEH Land Cover 2000 raster at 25 m2. Drainage basin areas were discretised using the IHDTM (50 m2) and streams created using ArcGIS 10.6. Land cover scenarios were converted to fractions of the eight different land cover types according to JULES base configuration at a 1 km2 grid scale. Each of the eight land fractions rasters were then combined in a netCDF file using the Python packages rasterio and netCDF4 to create the land cover scenarios in a format for JULES to process. Land maps generated were compared to the CHESS-land dataset to ensure that they were generated accurately.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-5047-1631"],"organisation":["University of Oxford","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f484ff54-9139-462e-b37a-347a69f78500","10.5285/f484ff54-9139-462e-b37a-347a69f78500"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/04xw4m193"],"state":"published","title":"Potential afforestation scenarios based on catchment structure and land cover for twelve catchments in Great Britain for use with the Joint UK Land Environment Simulator (JULES)","topic":["0/Hydrology/"],"version":1.0,"view":["public","phtr"],"shortenedDescription":"Data comprise a set of broadleaf afforestation scenarios (provided as netCDF files) that may be run with the Joint UK Land Environment Simulator (JULES), a community land surface model. The scenarios are based on the CEH Land Cover 2000 classification. Afforestation..."},{"publicationDate":"2024-01-24T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["T.W."],"authorFamilyName":["Scott"],"authorFullName":["Scott, T.W."],"authorOrcid":["https://orcid.org/0000-0002-5941-3905"],"catalogue":"eidc","description":"This code: (1) Generates data for the weak-selection mathematical model. This is contained in the \"Generate_data_for_island_model_weak_selection\" script. (2) Generates data for the agent-based simulation model, which accounts for stronger selection and finite populations. This is contained in the \"Generate_data_for_agent_based_simulation\" script. (3) Generates data for the version of the agent-based simulation model where there is no tag mutation, in which balancing selection is examined via tag fixation times. This is contained in the \"Generate_data_for_balancing_selection_finite_pop\" script.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V011537/1"],"identifier":"aec1e55f-f6ac-4673-9e93-706b44df88f1","incomingCitationCount":0,"givenName":["T.W."],"familyName":["Scott"],"fullName":["Scott, T.W."],"keyword":["Evolutionary theory","Social evolution"],"keywordsOther":["Evolutionary theory","Social evolution"],"licence":"Open government licence","lineage":"This came into existence though the process of writing code for MATLAB, to numerically solve equations in the paper \"Multiple social encounters can eliminate Crozier’s paradox and stabilise genetic kin recognition\", and to construct agent-based simulations.","orcid":["https://orcid.org/0000-0002-5941-3905"],"organisation":["University of Oxford","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/aec1e55f-f6ac-4673-9e93-706b44df88f1","10.5285/aec1e55f-f6ac-4673-9e93-706b44df88f1"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Code for generating data for the weak-selection mathematical model and agent-based simulation models, for whether multiple social encounters can stabilise genetic kin recognition","version":1.0,"view":["public","matnic"],"shortenedDescription":"This code: (1) Generates data for the weak-selection mathematical model. This is contained in the \"Generate_data_for_island_model_weak_selection\" script. (2) Generates data for the agent-based simulation model, which accounts for stronger selection and finite populations...."},{"publicationDate":"2024-02-19T00:00:00.000+00:00","authorAffiliation":["Environmental Change Institute"],"authorGivenName":["J."],"authorFamilyName":["Verschuur"],"authorFullName":["Verschuur, J."],"authorOrcid":["https://orcid.org/0000-0002-5277-4353"],"catalogue":"eidc","description":"This dataset contains the projected fuel demand per vessel type in the year 2050 at 1377 ports around the world. The baseline fuel demand and the projected throughput at each port are also provided. Fourteen different trade scenarios are considered and trips shorter than 1000 km are excluded as these will likely be electrified.  The projected fuel demand is given in tonnes of Heavy Fuel Oil.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/W004976/1"],"identifier":"f22a6c34-bd82-4fde-911c-16793f2a6752","incomingCitationCount":0,"givenName":["J."],"familyName":["Verschuur"],"fullName":["Verschuur, J."],"keyword":["merchant shipping","fuel","international trade","decarbonization","trade projections"],"keywordsOther":["merchant shipping","fuel","international trade","decarbonization","trade projections"],"licence":"Open government licence","lineage":"Data are generated by coupling a previously developed Global Maritime Transport Model (OxMarTrans) with a vessel database including fuel consumption. This enables the quantification of present-day fuel demand at ports globally. This is combined with trade projections for 2050 (compared to 2015) which are used to scale fuel demand into the future. The dataset provided is the end-result of this, with fuel demand at the port-level provided for each future trade scenario. Quality assurance is provided by comparing the global fuel demand estimates with other modelling studies, showing that our estimates compare closely with other studies. ","locations":["POLYGON((-180 -90, -180 90, 180 90, 180 -90, -180 -90))"],"orcid":["https://orcid.org/0000-0002-5277-4353"],"organisation":["Environmental Change Institute","University of Oxford","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/f22a6c34-bd82-4fde-911c-16793f2a6752","10.5285/f22a6c34-bd82-4fde-911c-16793f2a6752"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/04xw4m193"],"state":"published","title":"Maritime fuel demand projections for the year 2050 at 1377 global ports","version":1.0,"view":["public","jenroe"],"shortenedDescription":"This dataset contains the projected fuel demand per vessel type in the year 2050 at 1377 ports around the world. The baseline fuel demand and the projected throughput at each port are also provided. Fourteen different trade scenarios are considered and trips shorter..."},{"publicationDate":"2024-09-26T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["E.","W.","D.","L."],"authorFamilyName":["Warner","Heeney","Bowen","Crowley"],"authorFullName":["Warner, E.","Heeney, W.","Bowen, D.","Crowley, L."],"authorOrcid":["https://orcid.org/0000-0003-2236-9725"],"authorRor":["https://ror.org/052gg0110"],"catalogue":"eidc","description":"This dataset contains biodiversity data focussing on invertebrates (soil, ground, tree canopy), and plants collected from The Carbon Community woodland creation experiment in Wales. This includes measurements from 72 plots, covering experimental treatment combinations of woodland type (native broadleaf vs sitka spruce), enhanced weathering (with/without basalt addition), and soil microbiome inoculation (with/without soil from mature habitat type), compared to a grassland control treatment. \nThe experiment was established in April 2021 and aims to assess strategies for maximising woodland carbon storage. The biodiversity data from each experimental plot was collected in summer 2023. \n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Leverhulme Trust"],"grant":["NE/W004976/1"],"identifier":"dea46de1-9072-4342-b944-e485ccc1324a","incomingCitationCount":0,"givenName":["E.","W.","D.","L."],"familyName":["Warner","Heeney","Bowen","Crowley"],"fullName":["Warner, E.","Heeney, W.","Bowen, D.","Crowley, L."],"keyword":["Biodiversity","Environmental survey","invertebrates","plant biodiversity","soil carbon","enhanced weathering","soil microbiome inoculation","woodland and forest","The Carbon Community"],"keywordsTheme":["Biodiversity","Environmental survey"],"keywordsOther":["invertebrates","plant biodiversity","soil carbon","enhanced weathering","soil microbiome inoculation","woodland and forest","The Carbon Community"],"licence":"Open government licence","lineage":"The experiment has a randomised blocked design, with 8 blocks of the 9 treatments, giving a total of 72 replicate plots. \nInvertebrate samples were collected from the soil (invertebrates extracted from soil cores using Tullgren funnels), ground layer (pitfall trapping) and tree canopy (beating) in June/July 2023. Invertebrates were identified to a minimum of Order in the lab in autumn/winter 2023. All carabid beetles from the pitfall trap samples were identified to species.\nPlant data was recorded directly in the field in June/July 2023, with percentage cover estimates assigned using the DOMIN scale.\n","locations":["POLYGON((-3.752 52.057, -3.752 52.065, -3.743 52.065, -3.743 52.057, -3.752 52.057))"],"orcid":["https://orcid.org/0000-0003-2236-9725"],"organisation":["University of Oxford","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/dea46de1-9072-4342-b944-e485ccc1324a","10.5285/dea46de1-9072-4342-b944-e485ccc1324a"],"resourceStatus":"Embargoed","resourceType":"Dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/052gg0110","https://ror.org/04xw4m193"],"state":"published","title":"Invertebrate and plant biodiversity data from a woodland creation experiment, collected two years post-establishment, Wales, 2023","topic":["0/Biodiversity/","0/Environmental survey/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"This dataset contains biodiversity data focussing on invertebrates (soil, ground, tree canopy), and plants collected from The Carbon Community woodland creation experiment in Wales. This includes measurements from 72 plots, covering experimental treatment combinations..."},{"publicationDate":"2023-12-12T00:00:00.000+00:00","authorAffiliation":["University of Oxford"],"authorGivenName":["T.W."],"authorFamilyName":["Scott"],"authorFullName":["Scott, T.W."],"authorOrcid":["https://orcid.org/0000-0002-5941-3905"],"catalogue":"eidc","description":"This code contains scripts for generating data (specifically, these scripts numerically implement our mathematical model).\nThere are three data generating scripts: \"Script_for_generating_parameter_sweep_data.m\", \"Script_for_generating_single_trial_data.m\", \"Script_for_generating_initial_genotype_frequencies.m\". Running the \"Script_for_generating_parameter_sweep_data.m\" script will generate long-term (equilibrium) results for a range of d (parasite virulence) and lag (parasite evolutionary lag) values, and save these results in matrices. Running the \"Script_for_generating_single_trial_data.m\" script will generate over-time (dynamical) results for a specific set of parameter values. Both of these scripts call the \"Script_for_generating_initial_genotype_frequencies.m\" in order to generate the initial genotype frequencies that start off each run.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V011537/1"],"identifier":"0b78e33c-1f81-4125-9558-c354292bda92","incomingCitationCount":0,"givenName":["T.W."],"familyName":["Scott"],"fullName":["Scott, T.W."],"keyword":["Evolutionary theory","Social evolution"],"keywordsOther":["Evolutionary theory","Social evolution"],"licence":"Open government licence","lineage":"This came into existence though the process of writing code for MATLAB, to numerically solve equations in the paper \"Host-parasite coevolution and the stability of genetic kin recognition\".","orcid":["https://orcid.org/0000-0002-5941-3905"],"organisation":["University of Oxford","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0b78e33c-1f81-4125-9558-c354292bda92","10.5285/0b78e33c-1f81-4125-9558-c354292bda92"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Oxford"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Code for generating long-term equilibrium results for a range of parasite virulence and parasite evolutionary lag values, and dynamical results for specific parameter values","version":1.0,"view":["public","matnic"],"shortenedDescription":"This code contains scripts for generating data (specifically, these scripts numerically implement our mathematical model).\nThere are three data generating scripts: \"Script_for_generating_parameter_sweep_data.m\", \"Script_for_generating_single_trial_data.m\", \"Script_for_generating_initial_genotype_frequencies.m\"...."}],"facets":[{"fieldName":"topic","displayName":"Topic","hierarchical":true,"admin":false,"results":[{"name":"Agriculture","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CUniversity+of+Oxford&facet=topic%7C0%2FAgriculture%2F","active":false,"count":69},{"name":"Animal behaviour","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CUniversity+of+Oxford&facet=topic%7C0%2FAnimal+behaviour%2F","active":false,"count":78},{"name":"Biodiversity","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CUniversity+of+Oxford&facet=topic%7C0%2FBiodiversity%2F","active":false,"count":274},{"name":"Climate and climate change","url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CUniversity+of+Oxford&facet=topic%7C0%2FClimate+and+climate+change%2F","active":false,"count":162},{"name":"Ecosystem 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