{"numFound":26,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=rightsHolder%7CUniversity+of+Stirling&facet=recordType%7CDataset","nextPage":"http://catalogue.ceh.ac.uk/eidc/documents?page=2&facet=rightsHolder%7CUniversity+of+Stirling&facet=recordType%7CDataset","results":[{"publicationDate":"2023-05-24T00:00:00.000+00:00","authorAffiliation":["University of Newcastle","University of Stirling"],"authorGivenName":["Z.","R.S.","D.","N.J."],"authorFamilyName":["Pattison","Quilliam","Oliver","Willby"],"authorFullName":["Pattison, Z.","Quilliam, R.S.","Oliver, D.","Willby, N.J."],"authorOrcid":["https://orcid.org/0000-0002-5243-0876","https://orcid.org/0000-0001-7020-4410","https://orcid.org/0000-0002-6200-562X","https://orcid.org/0000-0002-1020-0933"],"authorRor":["https://ror.org/01kj2bm70","https://ror.org/045wgfr59"],"catalogue":"eidc","description":"This dataset contains information about water quality based on faecal indicators at eighteen lakes in each of three lake districts: \n -  Greater Glasgow conurbation, Scotland\n -  Cumbria, NW England\n -  Norfolk, E England.\n\nLakes were sampled once in each of three seasons (spring, summer and autumn) in either 2016 (Norfolk) or 2017 (Cumbria and Greater Glasgow) with faecal indicators being quantified at three discrete sampling stations in each lake (>50m apart) and at three points at each station (i.e. nine samples per lake per sampling date).  Faecal indicators were quantified based on standard dilution, membrane filtration and incubation, followed by colony counting.\n\nThe data were collected to investigate the fine scale connectivity between Faecal Indicator Organisms (FIO) densities within water bodies and diffuse and point source inputs from the adjacent catchment and from biological vectors. They also provide an indication of the relative sources of variation in reported concentrations that is relevant for environmental regulatory purposes.\n\nThe work was supported by the Natural Environment Research Council grant NE/N006437/1 (Hydroscape: connectivity x stressor interactions in freshwater habitats).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/N006437/1"],"identifier":"5f988cd4-479d-4e35-8835-42f80ebc1698","incomingCitationCount":0,"givenName":["Z.","R.S.","D.","N.J."],"familyName":["Pattison","Quilliam","Oliver","Willby"],"fullName":["Pattison, Z.","Quilliam, R.S.","Oliver, D.","Willby, N.J."],"keyword":["Water quality","Connectivity","spatial variation","faecal indicators","Human health","microbiology","water quality","human health","Rural-urban"],"keywordsTheme":["Water quality"],"keywordsOther":["Connectivity","spatial variation","faecal indicators","Human health","microbiology","water quality","human health","Rural-urban"],"licence":"Open government licence","lineage":"Sub-surface water samples obtained from multiple discrete points within 18 water bodies in each of three lake districts via wading and shore-based sampling.\n\nStandard water body characteristics (area, elevation, perimeter etc) are available from the UK Lakes Portal (https://eip.ceh.ac.uk/apps/lakes/).\n\nWater samples for microbial analysis were stored at 4 degrees C and processed within six hours of collection. 100ml samples at three dilutions were filtered through 0.45-um membrane filters, placed onto the surface of Membrane Lactose Glucoronide Agar (MLGA agar). Plates were incubated at 37 degrees C and counted after 24 hours. Counts are reported as number of Colony Forming Units (CFU) per 100 ml water.\n\nData limitations: spatial sampling points within each water body were established with a handheld GPS with typical accuracy of +/- 3-5m. Concentrations of Faecal Indicator Organisms (FIOs), especially in water, are highly spatially and temporally variable over short distances and time scales. The data therefore provide a near instantaneous picture of the spatial variation in FIO concentrations within a water body at a given time. The data are suitable for an assessment of relative sources of variation in FIO concentrations (i.e. within sample location, between sample location, between site, between district and between season).\n\nData were added to an Excel spreadsheet and exported as .csv files for deposit into the EIDC.","locations":["POLYGON((-4.636 52.117, -4.636 56.032, 1.939 56.032, 1.939 52.117, -4.636 52.117))"],"orcid":["https://orcid.org/0000-0002-5243-0876","https://orcid.org/0000-0001-7020-4410","https://orcid.org/0000-0002-6200-562X","https://orcid.org/0000-0002-1020-0933"],"organisation":["NERC EDS Environmental Information Data Centre","University of Newcastle","University of Stirling"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/5f988cd4-479d-4e35-8835-42f80ebc1698","10.5285/5f988cd4-479d-4e35-8835-42f80ebc1698"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/04xw4m193","https://ror.org/01kj2bm70","https://ror.org/045wgfr59"],"state":"published","supplementalName":["Lakes portal"],"title":"Faecal indicator data from 54 lakes in Greater Glasgow, Cumbria, and Norfolk, UK, 2016-2017","topic":["0/Water quality/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"This dataset contains information about water quality based on faecal indicators at eighteen lakes in each of three lake districts: \n -  Greater Glasgow conurbation, Scotland\n -  Cumbria, NW England\n -  Norfolk, E England.\n\nLakes were sampled once in each of three seasons..."},{"publicationDate":"2023-05-04T00:00:00.000+00:00","authorAffiliation":["University of Stirling","Durham University","Technical University of Dresden","Weihenstephan-Triesdorf University of Applied Sciences"],"authorGivenName":["P.","D.","M.","C.","A."],"authorFamilyName":["Morley","Donoghue","Van der Maaten-Theunissen","Zang","Jump"],"authorFullName":["Morley, P.","Donoghue, D.","Van der Maaten-Theunissen, M.","Zang, C.","Jump, A."],"authorOrcid":["https://orcid.org/0000-0002-7503-2520","https://orcid.org/0000-0002-9931-9083","https://orcid.org/0000-0002-2942-9180","https://orcid.org/0000-0002-9843-854X","https://orcid.org/0000-0002-2167-6451"],"authorRor":["https://ror.org/045wgfr59","https://ror.org/01v29qb04","https://ror.org/042aqky30","https://ror.org/00gzkxz88"],"catalogue":"eidc","description":"This dataset comprises forest inventory (diameter at breast height, tree height, social class and relative crown distance) and tree canopy health data (extent of overall damage, discolouration and defoliation) collected in 2021 from sites within core protected areas of the UNESCO Rhӧn Biosphere Reserve dominated by European beech (Fagus sylvatica) forest. The study forests were subject to the extreme drought event that impacted central Europe in 2018/2019 and this project sought to collect data to enable the analysis of individual tree and stand level characteristics that influence the response (canopy damage and defoliation) of European beech trees to extreme drought events. Field assessments of individual tree and stand canopy health were carried out within this project collecting data comprising canopy condition assessments and measurements of individual tree size and stand demography.  \n\nThe work was supported by the Natural Environment Research Council (Grant NE/V00929X/1).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V00929X/1"],"identifier":"4df17a8f-9854-4b6e-8578-d99fbefb1352","incomingCitationCount":0,"givenName":["P.","D.","M.","C.","A."],"familyName":["Morley","Donoghue","Van der Maaten-Theunissen","Zang","Jump"],"fullName":["Morley, P.","Donoghue, D.","Van der Maaten-Theunissen, M.","Zang, C.","Jump, A."],"keyword":["Germany","Canopy Condition","Extreme Drought","Forest Health"],"keywordsPlace":["Germany"],"keywordsOther":["Canopy Condition","Extreme Drought","Forest Health"],"licence":"Open government licence","lineage":"Forest inventory data were measured alongside canopy condition following protocol set out in the International Co-operative Programme on Assessment and Monitoring of Air Pollution Effects on Forests (ICP Forests) Manual on methods and criteria for harmonized sampling, assessment, monitoring and analysis of the effects of air pollution on forests Part IV Visual Assessment of Crown Condition and Damaging Agents. The dataset provided here detailed the complete set of individual tree measurements as measured in the field for 38 sites using 10m fixed radius plots. ","locations":["POLYGON((9.706 50.115, 9.706 50.72, 10.448 50.72, 10.448 50.115, 9.706 50.115))"],"orcid":["https://orcid.org/0000-0002-7503-2520","https://orcid.org/0000-0002-9931-9083","https://orcid.org/0000-0002-2942-9180","https://orcid.org/0000-0002-9843-854X","https://orcid.org/0000-0002-2167-6451"],"organisation":["University of Stirling","Durham University","Technical University of Dresden","Weihenstephan-Triesdorf University of Applied Sciences","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/4df17a8f-9854-4b6e-8578-d99fbefb1352","10.5285/4df17a8f-9854-4b6e-8578-d99fbefb1352"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling","Durham University"],"ror":["https://ror.org/045wgfr59","https://ror.org/01v29qb04","https://ror.org/042aqky30","https://ror.org/00gzkxz88","https://ror.org/04xw4m193"],"state":"published","title":"Post-drought forest inventory and tree canopy health data, Rhӧn Biosphere Reserve, Germany, 2021","version":1.0,"view":["public","matnic"],"shortenedDescription":"This dataset comprises forest inventory (diameter at breast height, tree height, social class and relative crown distance) and tree canopy health data (extent of overall damage, discolouration and defoliation) collected in 2021 from sites within core protected areas..."},{"publicationDate":"2023-09-22T00:00:00.000+00:00","authorAffiliation":["University of Jyväskylä","University of Stirling","UK Centre for Ecology & Hydrology"],"authorGivenName":["P.","I.","D.A. ","M.","L.","J.","S."],"authorFamilyName":["Salmi","Pölönen","Beckmann","Calderini","May","Olszewska","Perozzi","Pääkkönen","Taipale","Hunter"],"authorFullName":["Salmi, P.","Pölönen, I.","Beckmann, D.A.","Calderini, M.","May, L.","Olszewska, J.","Perozzi, L.","Pääkkönen, S.","Taipale, S.","Hunter, P."],"authorOrcid":["https://orcid.org/0000-0003-3247-2259","https://orcid.org/0000-0002-5129-7364","https://orcid.org/0009-0007-0457-6428","https://orcid.org/0000-0003-2532-3167","https://orcid.org/0000-0003-3385-9973","https://orcid.org/0000-0002-4910-2206","https://orcid.org/0000-0002-2548-0835","https://orcid.org/0000-0001-7510-7337","https://orcid.org/0000-0001-7269-795X"],"authorRor":["https://ror.org/05n3dz165","https://ror.org/045wgfr59","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset describes the concentrations of photosynthetic pigments (Chlorophylls, carotenoids and phycocyanin) measured by HPLC and spectrophotometry in water samples of 20 lochs in Scotland. Data were collected between May and June 2022.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Academy of Finland","European Union","Stirling and Clackmannanshire ","Scottish Government"],"grant":["NE/R016429/1","321780","776480 "],"identifier":"7794cbfa-1d74-4885-b303-8c20f4608728","incomingCitationCount":0,"givenName":["P.","I.","D.A. ","M.","L.","J.","S."],"familyName":["Salmi","Pölönen","Beckmann","Calderini","May","Olszewska","Perozzi","Pääkkönen","Taipale","Hunter"],"fullName":["Salmi, P.","Pölönen, I.","Beckmann, D.A.","Calderini, M.","May, L.","Olszewska, J.","Perozzi, L.","Pääkkönen, S.","Taipale, S.","Hunter, P."],"keyword":["carotenoid","phycocyanin","phytoplankton","chlorophyll","water quality","spectrophotometry","lake"],"keywordsOther":["carotenoid","phycocyanin","phytoplankton","chlorophyll","water quality","spectrophotometry","lake"],"licence":"Open government licence","lineage":"Water samples were collected by grab sampling from the surface water layers. Sampling sites were located along the lake shores, except at Loch Leven, where boats were used to collect samples from the open water.\n\nChlorophylls and carotenoids were determined with High Performance Liquid Chromatography (HPLC). Phycocyanin was determined by spectrophotometry.\n\nSamples for HPLC and spectrophotometry were collected on glass fibre filters (GF/F Whatman or Fisherbrand MF300) so that the filters were not clogged but were notably coloured.\n\nThe HPLC sample filters were folded to enclose the samples and wrapped in aluminium foil before flash-freezing them by submerging them in liquid nitrogen and then storing them at -80 °C. Sample filters for spectrophotometry were stored at -20 °C.\n\nFilters were shipped on dry-ice to the analysis laboratories where they were stored at -80 °C (HPLC) and 20 °C (spectrophotometry) and analysed within 4-6 months of collection. Details of the HPLC protocol and spectrophotometry are given in data_descriptor.docx.","locations":["POLYGON((-5.164 55.925, -5.164 56.759, -2.263 56.759, -2.263 55.925, -5.164 55.925))"],"orcid":["https://orcid.org/0000-0003-3247-2259","https://orcid.org/0000-0002-5129-7364","https://orcid.org/0009-0007-0457-6428","https://orcid.org/0000-0003-2532-3167","https://orcid.org/0000-0003-3385-9973","https://orcid.org/0000-0002-4910-2206","https://orcid.org/0000-0002-2548-0835","https://orcid.org/0000-0001-7510-7337","https://orcid.org/0000-0001-7269-795X"],"organisation":["University of Jyväskylä","University of Stirling","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7794cbfa-1d74-4885-b303-8c20f4608728","10.5285/7794cbfa-1d74-4885-b303-8c20f4608728"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Jyväskylä","UK Centre for Ecology & Hydrology","University of Stirling"],"ror":["https://ror.org/05n3dz165","https://ror.org/045wgfr59","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Photosynthetic pigments in water samples from 20 lochs in Scotland, May-June 2022","version":1.0,"view":["public","glenn"],"shortenedDescription":"This dataset describes the concentrations of photosynthetic pigments (Chlorophylls, carotenoids and phycocyanin) measured by HPLC and spectrophotometry in water samples of 20 lochs in Scotland. Data were collected between May and June 2022."},{"publicationDate":"2025-04-09T00:00:00.000+00:00","authorAffiliation":["University of Stirling"],"authorGivenName":["M.J.","H.L.","R.","D.M.","R.S."],"authorFamilyName":["Ormsby","White","Metcalf","Oliver","Quilliam"],"authorFullName":["Ormsby, M.J.","White, H.L.","Metcalf, R.","Oliver, D.M.","Quilliam, R.S."],"authorOrcid":["https://orcid.org/0000-0002-3991-2336","https://orcid.org/0000-0002-6200-562X","https://orcid.org/0000-0001-7020-4410"],"authorRor":["https://ror.org/045wgfr59"],"catalogue":"eidc","description":"This dataset contains information relating to the survival and persistence of clinically relevant strains of E. coli on plastic and cotton, under environmentally relevant conditions. The data encompass bacterial strain identity, material type, timepoints (days), bacterial concentration (CFU/ml) and survival percentages. Data were sampled over a 28-day period using culture-based approaches; and the ability of isolates to cause disease following their recovery was determined through the use of a Galleria mellonella model.\n\nThis work was supported by the UKRI Natural Environment Research Council (NERC) as part of the GCRF SPACES project [grant number NE/V005847/1] and the Plastic Vectors project, “Microbial hitch-hikers of marine plastics: the survival, persistence & ecology of microbial communities in the ‘Plastisphere’” [grant number NE/S005196/1].","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V005847/1","NE/S005196/1"],"identifier":"268cab8c-459c-4bf8-9b90-838c4d18efb2","incomingCitationCount":0,"givenName":["M.J.","H.L.","R.","D.M.","R.S."],"familyName":["Ormsby","White","Metcalf","Oliver","Quilliam"],"fullName":["Ormsby, M.J.","White, H.L.","Metcalf, R.","Oliver, D.M.","Quilliam, R.S."],"keyword":["Pollution","plastic waste","biofilm","plastisphere","human pathogens","public health","wastewater"],"keywordsTheme":["Pollution"],"keywordsOther":["plastic waste","biofilm","plastisphere","human pathogens","public health","wastewater"],"licence":"Open government licence","lineage":"Biofilm formation, persistence and pathogenicity of E. coli were investigated through controlled laboratory experiments. Biofilms were generated on various materials in nutrient-rich and surface water environments, quantified using crystal violet staining, and analysed in triplicate. Persistence was assessed by recovering E. coli from biofilms over 28 days, followed by serial dilution, and selective plating.\n\nPathogenicity was evaluated using Galleria mellonella larvae, with standardised inoculation protocols and survival monitoring for 72 hours. Data underwent thorough validation at each stage, including replication, and selective media confirmation, ensuring high reliability and accuracy before submission.\n","orcid":["https://orcid.org/0000-0002-3991-2336","https://orcid.org/0000-0002-6200-562X","https://orcid.org/0000-0001-7020-4410"],"organisation":["University of Stirling","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/268cab8c-459c-4bf8-9b90-838c4d18efb2","10.5285/268cab8c-459c-4bf8-9b90-838c4d18efb2"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/04xw4m193"],"state":"published","title":"Survival and persistence of clinically relevant E. coli on plastic waste under simulated environmental conditions","topic":["0/Pollution/"],"version":1.0,"view":["public","katwri"],"shortenedDescription":"This dataset contains information relating to the survival and persistence of clinically relevant strains of E. coli on plastic and cotton, under environmentally relevant conditions. The data encompass bacterial strain identity, material type, timepoints (days), bacterial..."},{"publicationDate":"2023-05-05T00:00:00.000+00:00","authorAffiliation":["University of Stirling","Durham University"],"authorGivenName":["P.","A.","D."],"authorFamilyName":["Morley","Jump","Donoghue"],"authorFullName":["Morley, P.","Jump, A.","Donoghue, D."],"authorOrcid":["https://orcid.org/0000-0002-7503-2520","https://orcid.org/0000-0002-2167-6451","https://orcid.org/0000-0002-9931-9083"],"catalogue":"eidc","description":"This dataset comprises four RGB unmanned aerial vehicle (UAV) images collected in September 2020 of European beech (Fagus sylvatica) forest within core protected areas of the UNESCO Rhӧn Biosphere Reserve, Germany. The study forests were subject to the extreme drought event that impacted central Europe in 2018/2019 and this project sought to collect data to enable the analysis of individual tree and stand level response (canopy damage and defoliation) of European beech trees to extreme drought events. The RGB images available in this dataset have approx. 3cm pixel size with an associated 10cm pixel digital elevation model (DEM) and are suitable for identifying individual trees and the degree of canopy damage (defoliation, discolouration, and mortality) sustained by individuals/stands within the forest. \n\nThe work was supported by the Natural Environment Research Council (Grant NE/V00929X/1).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V00929X/1"],"identifier":"b2d17962-3c7f-4193-a180-cde885d1a83e","incomingCitationCount":0,"givenName":["P.","A.","D."],"familyName":["Morley","Jump","Donoghue"],"fullName":["Morley, P.","Jump, A.","Donoghue, D."],"keyword":["Germany","Forest Health","UAV","RGB","Canopy Condition","Extreme Drought"],"keywordsPlace":["Germany"],"keywordsOther":["Forest Health","UAV","RGB","Canopy Condition","Extreme Drought"],"licence":"Open government licence","lineage":"The RGB UAV data and associated Digital Elevation Model were collected using a DJI Phantom 4 UAV. Individual images were processed by the NERC Field Spectroscopy Facility with the orthorectified mosaics made available.","locations":["POLYGON((10.082 50.466, 10.082 50.508, 10.116 50.508, 10.116 50.466, 10.082 50.466))"],"orcid":["https://orcid.org/0000-0002-7503-2520","https://orcid.org/0000-0002-2167-6451","https://orcid.org/0000-0002-9931-9083"],"organisation":["University of Stirling","Durham University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b2d17962-3c7f-4193-a180-cde885d1a83e","10.5285/b2d17962-3c7f-4193-a180-cde885d1a83e"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling","Durham University"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Unmanned aerial vehicle images of drought-stressed European beech forests in the Rhӧn Biosphere Reserve, Germany, 2020","version":1.0,"view":["public","matnic"],"shortenedDescription":"This dataset comprises four RGB unmanned aerial vehicle (UAV) images collected in September 2020 of European beech (Fagus sylvatica) forest within core protected areas of the UNESCO Rhӧn Biosphere Reserve, Germany. The study forests were subject to the extreme drought..."},{"publicationDate":"2024-07-15T00:00:00.000+00:00","authorAffiliation":["University of Stirling"],"authorGivenName":["R.","H.L. "],"authorFamilyName":["Metcalf","Fellows","White","Quilliam"],"authorFullName":["Metcalf, R.","Fellows, R.","White, H.L.","Quilliam, R."],"authorOrcid":["https://orcid.org/0000-0002-1463-427X","https://orcid.org/0000-0001-7020-4410"],"authorRor":["https://ror.org/045wgfr59"],"catalogue":"eidc","description":"In this mesocosm study, three types of wet wipes (plastic containing, and home and commercially compostable) colonised with E. coli were buried in beach sand and their degradation, tensile strength, and concentration of E. coli was quantified over 15 weeks. \nWipes were firstly passed through a series of treatments to simulate their journey from the bathroom to the beach. Water characteristics (pH, salinity) of these water types were measured.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S005196/1 ","NE/V005847/1"],"identifier":"19a8083b-afa4-40b9-91bf-7a529eea870d","incomingCitationCount":0,"givenName":["R.","H.L. "],"familyName":["Metcalf","Fellows","White","Quilliam"],"fullName":["Metcalf, R.","Fellows, R.","White, H.L.","Quilliam, R."],"keyword":["Pollution","public health","environmental pathogens","sewage discharge","plastic pollution","sand microbiology","microbiology"],"keywordsTheme":["Pollution"],"keywordsOther":["public health","environmental pathogens","sewage discharge","plastic pollution","sand microbiology","microbiology"],"licence":"Open government licence","lineage":"At weekly timepoints (for 15 weeks), four of each wet wipe type were randomly selected, and removed from the mesocosm using sterile forceps. The loosely adhering sand was shaken off and each wet wipe transferred into a sterile glass vial containing 20 ml phosphate-buffered saline (PBS). Vials were then vortexed at 1500 rpm for 5 min and E. coli enumerated by filtering the PBS through 0.45 μm filters, which were placed onto selective media and incubated at 37°C. The wet wipes were removed from the glass vials and left to dry overnight. The following day, a 50 N digital force meter was used to quantify tensile strength by measuring the force required to break each wipe. Wipes were also photographed to determine degradation visually.\nBackground bacterial concentrations were measured by filtering 100 ml water through 0.45 μm cellulose acetate membranes and placed onto selective media.\n","orcid":["https://orcid.org/0000-0002-1463-427X","https://orcid.org/0000-0001-7020-4410"],"organisation":["University of Stirling","University of Stirling ","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/19a8083b-afa4-40b9-91bf-7a529eea870d","10.5285/19a8083b-afa4-40b9-91bf-7a529eea870d"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Stirling "],"ror":["https://ror.org/045wgfr59","https://ror.org/04xw4m193"],"state":"published","title":"Tensile strength and concentrations of E. coli colonising three types of wet wipes in a sand mesocosm","topic":["0/Pollution/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"In this mesocosm study, three types of wet wipes (plastic containing, and home and commercially compostable) colonised with E. coli were buried in beach sand and their degradation, tensile strength, and concentration of E. coli was quantified over 15 weeks. \nWipes were..."},{"publicationDate":"2025-06-12T00:00:00.000+00:00","authorAffiliation":["University of Stirling"],"authorGivenName":["Michael","Luke","Hannah","Rosie","David","Richard"],"authorFamilyName":["Ormsby","Woodford","White","Fellows","Oliver","Quilliam"],"authorFullName":["Ormsby, M.","Woodford, L.","White, H.","Fellows, R.","Oliver, D.","Quilliam, R."],"authorOrcid":["https://orcid.org/0000-0002-3991-2336","https://orcid.org/0000-0003-2530-2120","https://orcid.org/0009-0003-8928-2189","https://orcid.org/0000-0002-6200-562X","https://orcid.org/0000-0001-7020-4410"],"authorRor":["https://ror.org/045wgfr59"],"catalogue":"eidc","description":"This dataset contains information relating to the survival and persistence of clinically relevant strains of toxigenic Vibrio cholerae on plastic and vegetation, under environmentally relevant conditions. The data encompass bacterial strain identity, material type, timepoints (days), bacterial concentration (CFU/ml) and survival percentages. Data were sampled over a 28-day period using culture-based approaches; and the ability of isolates to cause disease following their recovery was determined through the use of a Galleria mellonella model. The ability of isolates to persist on materials, dissociate from materials into water bodies, and recolonise materials was also determined.\n\nThis work was supported by the UKRI Natural Environment Research Council (NERC) as part of the GCRF SPACES project [grant number NE/V005847/1] and the Plastic Vectors project, “Microbial hitch-hikers of marine plastics: the survival, persistence & ecology of microbial communities in the ‘Plastisphere’” [grant number NE/S005196/1].","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V005847/1","NE/S005196/1"],"identifier":"b9bfdb6f-5e5e-496f-bf0c-bb9931f6046b","incomingCitationCount":0,"givenName":["Michael ","Michael","Luke","Hannah","Rosie","David","Richard"],"familyName":["Ormsby","Woodford","White","Fellows","Oliver","Quilliam"],"fullName":["Michael Ormsby","Ormsby, M.","Woodford, L.","White, H.","Fellows, R.","Oliver, D.","Quilliam, R."],"keyword":["Environmental risk","Climate and climate change","Water quality","Biofilm","Human Pathogens","Plastic Pollution","Plastisphere","Public Health"],"keywordsTheme":["Environmental risk","Climate and climate change","Water quality"],"keywordsOther":["Biofilm","Human Pathogens","Plastic Pollution","Plastisphere","Public Health"],"licence":"Open government licence","lineage":"Data were generated through laboratory experiments investigating the persistence, virulence, and survival of clinically relevant strains of toxigenic Vibrio cholerae. Bacteria were cultured on materials (Polyethylene [PE], polypropylene [PP] and banana leaf [BL]) and analysed for persistence over time (up to 28 days) and virulence using Galleria mellonella larvae. Materials (PE, PP and BL) were prepared and inoculated under controlled laboratory conditions. V. cholerae strains were inoculated onto materials in nutrient-rich and surface water environments. Sampling was taken at defined time points (7, 14, 21, 28 days). G. mellonella larvae were used to evaluate virulence, and survival was assessed over 72 h. The experiments utilised standard laboratory equipment such as 96-well plates and incubators. G. mellonella larvae were sourced from a local supplier and used within one week of delivery. Instrumentation used for bacterial enumeration, including the plate reader, was calibrated according to standard laboratory protocols. The data underwent rigorous quality control through replication (biological triplicates), statistical analysis (ANOVA), and controlled experimental conditions (e.g., temperature and material consistency). Statistical methods including ANOVA and Tukey’s post-hoc tests were applied to assess treatment effects and survival outcomes.\n","orcid":["https://orcid.org/0000-0002-3991-2336","https://orcid.org/0000-0003-2530-2120","https://orcid.org/0009-0003-8928-2189","https://orcid.org/0000-0002-6200-562X","https://orcid.org/0000-0001-7020-4410"],"organisation":["University of Stirling","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/b9bfdb6f-5e5e-496f-bf0c-bb9931f6046b","10.5285/b9bfdb6f-5e5e-496f-bf0c-bb9931f6046b"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/04xw4m193"],"state":"published","title":"Survival and persistence of clinically relevant strains of toxigenic Vibrio cholerae on plastic and vegetation, under environmentally relevant conditions","topic":["0/Environmental risk/","0/Climate and climate change/","0/Water quality/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains information relating to the survival and persistence of clinically relevant strains of toxigenic Vibrio cholerae on plastic and vegetation, under environmentally relevant conditions. The data encompass bacterial strain identity, material type,..."},{"publicationDate":"2022-06-27T00:00:00.000+00:00","authorAffiliation":["University of Newcastle","University of Stirling"],"authorGivenName":["Z.","R.S.","D.","Nigel J."],"authorFamilyName":["Pattison","Quilliam","Oliver","Willby"],"authorFullName":["Pattison, Z.","Quilliam, R.S.","Oliver, D.","Willby, N.J."],"authorOrcid":["https://orcid.org/0000-0002-5243-0876","https://orcid.org/0000-0001-7020-4410","https://orcid.org/0000-0002-6200-562X","https://orcid.org/0000-0002-1020-0933"],"authorRor":["https://ror.org/01kj2bm70","https://ror.org/045wgfr59"],"catalogue":"eidc","description":"This dataset contains information about water quality based on faecal indicators at 15 lakes in the Greater Glasgow conurbation, Scotland. Lakes were sampled in winter (2016/17) and summer (2017) with faecal indicators being quantified at high spatial resolution (up to 60 points per lake depending on water body size) in sediment and water from each lake.  Faecal indicators were quantified based on standard dilution, membrane filtration and incubation for water, and incubation in bacteria-specific broth, followed by plating and incubation for sediment extracts.  Contextual information about water quality, water bird densities, and land cover in different buffer sizes is also provided for each lake. The data were collected to investigate how connectivity and stressors interact to determine biodiversity and ecosystem function in freshwaters.\n\nThe work was supported by the Natural Environment Research Council grant NE/N006437/1 (Hydroscape: connectivity x stressor interactions in freshwater habitats)\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/N006437/1 "],"identifier":"34df30f2-3163-4c11-8743-3732e49220fb","incomingCitationCount":0,"givenName":["Nigel J.","Z.","R.S.","D."],"familyName":["Willby","Pattison","Quilliam","Oliver"],"fullName":["Willby, N.J.","Pattison, Z.","Quilliam, R.S.","Oliver, D."],"keyword":["Glasgow","Water quality","microbiology","urban area","faecal indicators","spatial variation","connectivity"],"keywordsPlace":["Glasgow"],"keywordsTheme":["Water quality"],"keywordsOther":["microbiology","urban area","faecal indicators","spatial variation","connectivity"],"licence":"Open government licence","lineage":"Sub-surface water samples and cores of the upper 5cm of sediment obtained from multiple geolocated points within each of 15 water bodies via boat-based sampling.\n\nFor consistency all sites were sampled 3 hours after sunrise in summer (July) and on ice-free days in winter (Dec/Jan). Sampling intensity was dependent on water body size. Bird distribution and numbers were recorded for an hour from a suitable vantage point at the same time of sampling.\n\nA separate water sample was collected from a mid-point in each site for laboratory analysis of metals, nutrients and other standard determinands (Thermo iCap 6000 Series or Dionex DX-120). Dissolved oxygen, pH, electrical conductivity and temperature were measured in the field using a HACH multiprobe.\n\nStandard water body characteristics (area, elevation, perimeter etc) are sourced from the U.K. Lakes Portal (https://eip.ceh.ac.uk/apps/lakes/)\n\nWater samples for microbial analysis were stored at 4 C and processed within 6 h of collection. 100ml samples at three dilutions were filtered through 0.45-m membrane filters, placed onto the surface of Membrane Lactose Glucoronide Agar (MLGA) agar. Plates were incubated at 37 deg C and counted after 24 h. Counts are reported as colony forming unit (CFU) per 100 ml water.\n\nA mixture of sediment (~2.5 g) and 50ml Phosphate buffered saline (PBS) was used to enumerate E. coli in the sediment. All sediment dilutions were made by placing samples in sterile PBS and shaking them. Each dilution was spread using disposable sterile loops onto MLGA agar plates and incubated at 37 deg C for 24 hours before counting colonies. To quantify abundance of Campylobacter, I. Enterococci, E. coli 0157 and E.coli in sediment a single composite 1g subsample was placed into a sterilised glass vial of 100ml LB broth. A 100ug sample of the aliquot of each sample was spread over the surface of agar plates with a disposable sterile loop and incubated following isolation and incubation protocol for each type of bacteria. Colonies were counted, and results are reported as CFU per g oven-dried soil.\n\nData were added to an Excel spreadsheet and exported as a .csv file for deposit into the EIDC.","locations":["POLYGON((-4.603 55.674, -4.603 55.983, -3.834 55.983, -3.834 55.674, -4.603 55.674))"],"orcid":["https://orcid.org/0000-0002-1020-0933","https://orcid.org/0000-0002-5243-0876","https://orcid.org/0000-0001-7020-4410","https://orcid.org/0000-0002-6200-562X"],"organisation":["University of Stirling","University of Newcastle","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/34df30f2-3163-4c11-8743-3732e49220fb","10.5285/34df30f2-3163-4c11-8743-3732e49220fb"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/01kj2bm70","https://ror.org/04xw4m193"],"state":"published","supplementalName":["Hydroscape website"],"title":"High spatial resolution seasonal distributions of faecally-derived waterborne and sediment bacteria in standing waters, Glasgow, UK, 2016-2017","topic":["0/Water quality/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"This dataset contains information about water quality based on faecal indicators at 15 lakes in the Greater Glasgow conurbation, Scotland. Lakes were sampled in winter (2016/17) and summer (2017) with faecal indicators being quantified at high spatial resolution (up..."},{"publicationDate":"2024-08-09T00:00:00.000+00:00","authorAffiliation":["University of Stirling","University of California Riverside"],"authorGivenName":["R.","H.L.","V. ","M.J.","D.O.","R. "],"authorFamilyName":["Metcalf","White","Moresco","Ormsby","Oliver","Quilliam"],"authorFullName":["Metcalf, R.","White, H.L.","Moresco, V.","Ormsby, M.J.","Oliver, D.O.","Quilliam, R."],"authorOrcid":["https://orcid.org/0000-0002-1463-427X","https://orcid.org/0000-0001-7020-4410"],"catalogue":"eidc","description":"The data includes concentrations of faecal indicator organisms isolated from the plastic waste and natural substrates found on Scottish beaches, as well as the antibiotic resistance of selected strains of these organisms.\nSewage-associated plastic waste, and naturally occurring substrates (seaweed and sand), were collected in 2021 from ten beaches along the Firth of Forth estuary (Scotland, UK). The concentrations of faecal indicator organisms (FIOs), E. coli and intestinal enterococci (IE), and potential human pathogens (Vibrio spp.) on the plastic waste and natural substrates were  analysed using selective media. Minimum inhibitory concentration (MIC) analysis was used to determine antibiotic resistance in selected strains.\n","documentType":"GEMINI_DOCUMENT","identifier":"9d0a6437-f01e-4cf3-9f83-86d2f4ead869","incomingCitationCount":0,"givenName":["R.","H.L.","V. ","M.J.","D.O.","R. "],"familyName":["Metcalf","White","Moresco","Ormsby","Oliver","Quilliam"],"fullName":["Metcalf, R.","White, H.L.","Moresco, V.","Ormsby, M.J.","Oliver, D.O.","Quilliam, R."],"keyword":["Beach pollution","Environmental pathogens","Plastic pollution","Plastisphere","Sewage discharge","Wet wipes"],"keywordsOther":["Beach pollution","Environmental pathogens","Plastic pollution","Plastisphere","Sewage discharge","Wet wipes"],"licence":"Open government licence","lineage":"Sewage-associated plastic waste (wipes, cotton bud sticks and sanitary products) was collected from ten beaches. All samples were stored at 4 °C and processed within 48 h.\nReplicate composite samples of wipes, cotton bud sticks and seaweed from each site were pre-enriched in non-selective media Luria-Bertani (LB) broth or Vibrio selective Bile Peptone broth at 37 °C in a shaking incubator for 18 h. Following pre-enrichment, serial dilutions were carried out in phosphate buffered saline (PBS) and dilutions were plated onto selective media. All plates were inverted and incubated. The presence or absence of target bacteria on all sewage-associated plastic waste samples was determined by enumerating colony forming units (CFUs).\nMinimum inhibitory concentration (MIC): Representative individual colonies of E. coli, IE and Vibrio spp. isolated from seaweed, wet wipe, and cotton bud stick samples, were picked off agar plates, grown further overnight in LB broth, and subjected to MIC analysis to determine antibiotic resistance to  amoxicillin, ampicillin, streptomycin, cephalexin, and tetracycline at varying concentrations. Two-fold serial dilutions of each antibiotic were made in LB broth in 96-well plates. Bacterial cultures were adjusted to an optical density at a wavelength of 600nm (OD600nm) of 0.1, and 10 μL added to each well of a 96-well plate. Samples were incubated overnight at 37 °C.\n","locations":["POLYGON((-3.878 55.848, -3.878 56.277, -2.747 56.277, -2.747 55.848, -3.878 55.848))"],"orcid":["https://orcid.org/0000-0002-1463-427X","https://orcid.org/0000-0001-7020-4410"],"organisation":["University of Stirling","University of California Riverside","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9d0a6437-f01e-4cf3-9f83-86d2f4ead869","10.5285/9d0a6437-f01e-4cf3-9f83-86d2f4ead869"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Concentrations and antibiotic resistance of faecal indicator organisms and human pathogens associated with sewage waste on Scottish beaches, 2021","version":1.0,"view":["public","elsdhi"],"shortenedDescription":"The data includes concentrations of faecal indicator organisms isolated from the plastic waste and natural substrates found on Scottish beaches, as well as the antibiotic resistance of selected strains of these organisms.\nSewage-associated plastic waste, and naturally..."},{"publicationDate":"2023-08-11T00:00:00.000+00:00","authorAffiliation":["University of Stirling","TU Dresden","Technical University of Munich"],"authorGivenName":["C.","A.","K.","M.","P."],"authorFamilyName":["Mercer","Jump","O'Sullivan","van der Maaten-Theunissen","Zang","Morley"],"authorFullName":["Mercer, C.","Jump, A.","O'Sullivan, K.","van der Maaten-Theunissen, M.","Zang, C.","Morley, P."],"authorOrcid":["https://orcid.org/0000-0001-5811-0980","https://orcid.org/0000-0002-2167-6451","https://orcid.org/0000-0001-9062-8886","https://orcid.org/0000-0002-7503-2520"],"authorRor":["https://ror.org/045wgfr59","https://ror.org/042aqky30","https://ror.org/02kkvpp62"],"catalogue":"eidc","description":"This dataset includes tree ring width data, derived from tree cores, that were sampled from sites across the Rhön Biosphere Reserve (Germany). At each chosen site three trees were cored, with two or three cores taken per cored tree. Data was collected in August 2021. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V00929X/1"],"identifier":"8d6effc3-54f2-4770-ac34-63320eb9e4e2","incomingCitationCount":0,"givenName":["C.","A.","K.","M.","P."],"familyName":["Mercer","Jump","O'Sullivan","van der Maaten-Theunissen","Zang","Morley"],"fullName":["Mercer, C.","Jump, A.","O'Sullivan, K.","van der Maaten-Theunissen, M.","Zang, C.","Morley, P."],"keyword":["Germany","dendrochronology","European beech","climate change","drought"],"keywordsPlace":["Germany"],"keywordsOther":["dendrochronology","European beech","climate change","drought"],"licence":"Open government licence","lineage":"Tree cores were sampled using increment borers. At each site three trees were chosen for coring, with two or three cores taken per tree. \n\nCores were sanded and ring widths measured based on high-resolution images of the sanded cores. Cores were cross-dated and summary statistics used to compare cross-dating accuracy. The dataset contains the resulting dated ring width series.","locations":["POLYGON((9.7 50.19, 9.7 50.58, 10.28 50.58, 10.28 50.19, 9.7 50.19))"],"orcid":["https://orcid.org/0000-0001-5811-0980","https://orcid.org/0000-0002-2167-6451","https://orcid.org/0000-0001-9062-8886","https://orcid.org/0000-0002-7503-2520"],"organisation":["University of Stirling","TU Dresden","Technical University of Munich","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8d6effc3-54f2-4770-ac34-63320eb9e4e2","10.5285/8d6effc3-54f2-4770-ac34-63320eb9e4e2"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/042aqky30","https://ror.org/02kkvpp62","https://ror.org/04xw4m193"],"state":"published","title":"European beech tree ring data, Rhön Biosphere Reserve, Germany, 2021","version":1.0,"view":["public","glenn"],"shortenedDescription":"This dataset includes tree ring width data, derived from tree cores, that were sampled from sites across the Rhön Biosphere Reserve (Germany). At each chosen site three trees were cored, with two or three cores taken per cored tree. Data was collected in August 2021...."},{"publicationDate":"2024-06-28T00:00:00.000+00:00","authorAffiliation":["Biological and Environmental Sciences, School of Natural Sciences, University of Stirling"],"authorGivenName":["A.S.","G."],"authorFamilyName":["Jump","Li"],"authorFullName":["Jump, A.S.","Li, G."],"authorOrcid":["https://orcid.org/0000-0002-2167-6451","https://orcid.org/0000-0002-8238-2801"],"authorRor":["https://ror.org/045wgfr59"],"catalogue":"eidc","description":"This dataset contains year-by-year tree inter-annual growth measurements (dendroecology, ring width) covering 1900-2019. European Beech tree cores were sampled in late 2019 at 12 sites in Bulgaria, Albania, Kosovo, and Spain. Measurements took place to fill the climatic gaps that European Beech Tree Ring Network (EBTRN) has not well covered at the hot and dry European distribution edges.","documentType":"GEMINI_DOCUMENT","identifier":"5a749178-cc87-4ccc-88e5-ea7c464f067b","incomingCitationCount":0,"givenName":["A.S.","G.","Guangqi"],"familyName":["Jump","Li"],"fullName":["Jump, A.S.","Li, G."],"keyword":["dendrometry","Europe","Phenology","European Beech","tree rings","tree ring width","tree growth","tree"],"keywordsInstrument":["dendrometry"],"keywordsPlace":["Europe"],"keywordsTheme":["Phenology"],"keywordsOther":["European Beech","tree rings","tree ring width","tree growth","tree"],"licence":"Open government licence","lineage":"In late 2019 fieldwork, European Beech tree cores were sampled at 12 sites of European beech in Bulgaria, Albania, Kosovo, and Spain. At least 15 trees per site and two cores per tree were sampled for those 12 sites. \nThe new tree cores were processed following the standard dendrology. They were first air-dried in the shade and ventilated space, then mounted onto the carrier before sanded by sandpaper from raw to fine grits (80, 120, 300, 600, 1200). \nAll cores were scanned into 2400 PPI images.\nTree core images were measured by the CDendro, with a precision of 0.01mm. \nFor each site, all measurements are cross-dated virtually and statistically, and COFECH is used to control the cross-dating quality.","locations":["POLYGON((-11 35, -11 72, 41 72, 41 35, -11 35))"],"orcid":["https://orcid.org/0000-0002-2167-6451","https://orcid.org/0000-0002-8238-2801"],"organisation":["Biological and Environmental Sciences, School of Natural Sciences, University of Stirling","NERC EDS Environmental Information Data Centre","University of Stirling"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/5a749178-cc87-4ccc-88e5-ea7c464f067b","10.5285/5a749178-cc87-4ccc-88e5-ea7c464f067b"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/04xw4m193"],"state":"published","title":"Beech tree ring data from hot and dry European distribution edges, 2019","topic":["0/Phenology/"],"version":1.0,"view":["public","rafbar"],"shortenedDescription":"This dataset contains year-by-year tree inter-annual growth measurements (dendroecology, ring width) covering 1900-2019. European Beech tree cores were sampled in late 2019 at 12 sites in Bulgaria, Albania, Kosovo, and Spain. Measurements took place to fill the climatic..."},{"publicationDate":"2025-04-09T00:00:00.000+00:00","authorAffiliation":["University of Stirling"],"authorGivenName":["M.J.","L.","H.L.","R.","R.S."],"authorFamilyName":["Ormsby","Woodford","White","Fellows","Quilliam"],"authorFullName":["Ormsby, M.J.","Woodford, L.","White, H.L.","Fellows, R.","Quilliam, R.S."],"authorOrcid":["https://orcid.org/0000-0002-3991-2336","https://orcid.org/0000-0003-2530-2120","https://orcid.org/0000-0001-7020-4410"],"authorRor":["https://ror.org/045wgfr59"],"catalogue":"eidc","description":"This dataset contains information relating to the survival and persistence of Salmonella spp. on plastic and glass, under conditions simulant of environmental UV exposure. The data encompass bacterial strain identity, material type, timepoints (days), temperature (°C), bacterial concentration (CFU/ml), survival percentages, and regression parameters. Data were sampled over a 21-day period using culture-based approaches; and the ability of isolates to cause disease following their recovery was determined through the use of a Galleria mellonella model.\n\nThis work was supported by the UKRI Natural Environment Research Council (NERC) as part of the GCRF SPACES project [grant number NE/V005847/1] and the Plastic Vectors project, “Microbial hitch-hikers of marine plastics: the survival, persistence & ecology of microbial communities in the ‘Plastisphere’” [grant number NE/S005196/1].\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V005847/1","NE/S005196/1"],"identifier":"57ef148f-8cfb-4ba6-b673-114b22b21613","incomingCitationCount":0,"givenName":["M.J.","L.","H.L.","R.","R.S."],"familyName":["Ormsby","Woodford","White","Fellows","Quilliam"],"fullName":["Ormsby, M.J.","Woodford, L.","White, H.L.","Fellows, R.","Quilliam, R.S."],"keyword":["Pollution","biofilm","environmental pollution","plastic pollution","public health","waste management","UV radiation"],"keywordsTheme":["Pollution"],"keywordsOther":["biofilm","environmental pollution","plastic pollution","public health","waste management","UV radiation"],"licence":"Open government licence","lineage":"Biofilm formation, persistence, pathogenicity, and die-off rates of Salmonella were investigated through controlled laboratory experiments. Biofilms were generated on various materials in nutrient-rich and surface water environments and analysed by CFU analysis. Persistence was assessed by recovering Salmonella from biofilms over 28 days, followed by serial dilution, selective plating, and confirmatory PCR targeting the ttr gene.\n\nPathogenicity was evaluated using Galleria mellonella larvae, with standardised inoculation protocols and survival monitoring for 72 hours. Die-off rates were determined by log10 transformation of CFU counts and modelled using linear regression, with statistical analyses (ANOVA, Holm-Šídák's multiple comparisons post-hoc tests) to evaluate treatment effects. Data underwent thorough validation at each stage, including replication, selective media confirmation, and regression modelling, ensuring high reliability and accuracy before submission.\n","orcid":["https://orcid.org/0000-0002-3991-2336","https://orcid.org/0000-0003-2530-2120","https://orcid.org/0000-0001-7020-4410"],"organisation":["University of Stirling","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/57ef148f-8cfb-4ba6-b673-114b22b21613","10.5285/57ef148f-8cfb-4ba6-b673-114b22b21613"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/04xw4m193"],"state":"published","title":"Survival of Salmonella Typhimurium on plastic waste under simulated environmental UV stress conditions","topic":["0/Pollution/"],"version":1.0,"view":["public","katwri"],"shortenedDescription":"This dataset contains information relating to the survival and persistence of Salmonella spp. on plastic and glass, under conditions simulant of environmental UV exposure. The data encompass bacterial strain identity, material type, timepoints (days), temperature (°C),..."},{"publicationDate":"2022-04-22T00:00:00.000+00:00","authorAffiliation":["University of Stirling"],"authorGivenName":["F.X.","J.A."],"authorFamilyName":["Joly","Subke"],"authorFullName":["Joly, F.X.","Subke, J.A."],"authorOrcid":["https://orcid.org/0000-0002-4453-865X","https://orcid.org/0000-0001-9244-639X"],"authorRor":["https://ror.org/045wgfr59"],"catalogue":"eidc","description":"This dataset contains the carbon and nitrogen content of soil organic matter fractions collected along grassland-to-forest conversion chronosequences. \n\nFour chronosequences of grassland-to-forest conversion were used across Scotland, from Alyth to Craik. Soil samples were collected in summer 2018. Soil samples were collected using soil corers. In 2020, soil samples were fractionated in the laboratory, and the elemental composition of bulk soil and soil fraction samples was determined. The goal of the study was to determine the changes in the quantity of soil organic carbon and nitrogen, and the form in which these carbon and nitrogen are stored.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"ad3d4c0a-66d5-4367-a41c-5f3cdff752f7","incomingCitationCount":0,"givenName":["François-Xavier","F.X.","J.A."],"familyName":["Joly","Subke"],"fullName":["Joly, F.","Joly, F.X.","Subke, J.A."],"keyword":["Scotland","Grasslands","Scot pine","Coniferous forests","Soil carbon","Soil organic matter","Soil fractions"],"keywordsPlace":["Scotland"],"keywordsOther":["Grasslands","Scot pine","Coniferous forests","Soil carbon","Soil organic matter","Soil fractions"],"licence":"Open government licence","lineage":"The data were collected from the results of each measure made on all soil samples. These separate results were then merged by site/sample/soil depth into a single dataframe using R. ","locations":["POLYGON((-8.648 54.634, -8.648 60.861, -0.728 60.861, -0.728 54.634, -8.648 54.634))"],"orcid":["https://orcid.org/0000-0002-4453-865X","https://orcid.org/0000-0001-9244-639X"],"organisation":["University of Stirling","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/ad3d4c0a-66d5-4367-a41c-5f3cdff752f7","10.5285/ad3d4c0a-66d5-4367-a41c-5f3cdff752f7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/04xw4m193"],"state":"published","title":"Carbon and nitrogen stocks in soil organic matter fractions along grassland-to-forest conversion chronosequences across Scotland in 2018","version":1.0,"view":["public","tinzha"],"shortenedDescription":"This dataset contains the carbon and nitrogen content of soil organic matter fractions collected along grassland-to-forest conversion chronosequences. \n\nFour chronosequences of grassland-to-forest conversion were used across Scotland, from Alyth to Craik. Soil samples..."},{"publicationDate":"2024-06-26T00:00:00.000+00:00","authorAffiliation":["University of Stirling"],"authorGivenName":["R.","A."],"authorFamilyName":["Metcalf","Akinbobola","Quilliam"],"authorFullName":["Metcalf, R.","Akinbobola, A.","Quilliam, R."],"authorOrcid":["https://orcid.org/0000-0002-1463-427X","https://orcid.org/0000-0002-6617-2791","https://orcid.org/0000-0001-7020-4410"],"catalogue":"eidc","description":"This dataset contains characterisation data, thermotolerance data, anti-fungal drug resistance data and virulence data of Candida isolates from different types of plastic pollution. Samples were collected from marine, estuarine and freshwater environments, and screened for pathogenic species of Candida. These Candida isolates were subsequently assessed for their thermotolerance, anti-fungal drug resistance, and their pathogenicity in a Galleria model of infection. \nData were collected as part of grants NE/V005847/1, Sustainable Plastic Attitudes to benefit Communities and their Environments (SPACES), and NE/S005196/1, Microbial hitch-hikers of marine plastics: the survival, persistence & ecology of microbial communities in the 'Plastisphere'.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V005847/1","NE/S005196/1"],"identifier":"4477f77c-c1c9-44e4-baeb-3353954c8355","incomingCitationCount":0,"givenName":["R.","A."],"familyName":["Metcalf","Akinbobola","Quilliam"],"fullName":["Metcalf, R.","Akinbobola, A.","Quilliam, R."],"keyword":["Central Scotland","Pollution","antifungal resistance","environmental pollution","fungal pathogens","plastisphere","pathogenic yeast","virulence"],"keywordsPlace":["Central Scotland"],"keywordsTheme":["Pollution"],"keywordsOther":["antifungal resistance","environmental pollution","fungal pathogens","plastisphere","pathogenic yeast","virulence"],"licence":"Open government licence","lineage":"At each site, plastic was collected using sterile forceps and placed into sterile ziplock bags. Candida species were recovered from replicate composite samples of each plastic type from each site using selective media. Twenty-seven colonies were isolated, and glycerol stocks prepared and frozen at -20°C.\n\nColony PCR was carried out with primers targeting the ITS region to identify the five common pathogenic species of Candida, i.e., C. albicans, C. glabrata, C. krusei, C. parapsilosis, and C. tropicalis. Different amplicon sizes were used to differentiate between distinct Candida species and three reference clinical pathogenic strains of C. albicans (strain SC 5314), C. glabrata (strain ATCC 2001) and C. tropicalis (strain CAY676), were included as positive controls.\n\nTo further confirm the identity of each isolate, the ITS1 region was amplified and sequenced. All purified PCR products underwent Sanger sequencing and species identification was confirmed using NCBI’s Basic Local Alignment Search Tool.\n\nEach Candida isolate were subjected to minimum inhibitory concentration (MIC) analysis to determine antifungal resistance following the European Committee on Antimicrobial susceptibility testing (EUCAST) antifungal MIC method for yeasts. Resistance to four antifungals at ten concentrations was examined: amphotericin B (0.008 – 4 mg/L), caspofungin (0.008 – 4 mg/L), fluconazole (0.125 – 64 mg/L), voriconazole (0.008 – 4 mg/L).\nTo determine the thermotolerance profile, each isolate underwent an initial incubation at 18°C (simulating an environmental temperature) or 38°C (simulating human body temperature) for 24 h, before being moved to one of three different temperatures (18, 28 or 38°C) where their growth was measured. Absorbance at 570 nm was measured before and after incubation in a spectrophotometer to determine the growth of the isolates. \n\nGalleria melonella was used as an infection model to investigate the pathogenicity of the Candida isolates. Groups of 10 larvae were injected with 10 µL of Candida cells (105 CFU/larvae) into the hemocoel via the last right pro-limb. All experiments were conducted in biological triplicate. An inoculation of 10 µL PBS was used as a control to account for mortality caused by physical injury or infection by contamination. Following injection, larvae were incubated at 37°C, and survival evaluated every 24 h for a total of 120 h. Larvae were considered dead when they did not respond to a touch stimulus.\n","locations":["POLYGON((-6.196 55.398, -6.196 56.753, -0.681 56.753, -0.681 55.398, -6.196 55.398))"],"orcid":["https://orcid.org/0000-0002-1463-427X","https://orcid.org/0000-0002-6617-2791","https://orcid.org/0000-0001-7020-4410"],"organisation":["University of Stirling","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/4477f77c-c1c9-44e4-baeb-3353954c8355","10.5285/4477f77c-c1c9-44e4-baeb-3353954c8355"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/04xw4m193","https://ror.org/045wgfr59"],"state":"published","title":"Characterisation, minimum inhibitory concentration, thermotolerance and virulence of Candida isolated from environmental plastic pollution, Scotland, 2023","topic":["0/Pollution/"],"version":1.0,"view":["public","hajd"],"shortenedDescription":"This dataset contains characterisation data, thermotolerance data, anti-fungal drug resistance data and virulence data of Candida isolates from different types of plastic pollution. Samples were collected from marine, estuarine and freshwater environments, and screened..."},{"publicationDate":"2025-01-08T00:00:00.000+00:00","authorAffiliation":["University of Stirling","Forest Research"],"authorGivenName":["E.","K.","M.","K.J."],"authorFamilyName":["Waddell","Fuentes-Montemayor","Watts","Guy","Park"],"authorFullName":["Waddell, E.","Fuentes-Montemayor, E.","Watts, K.","Guy, M.","Park, K.J."],"authorOrcid":["https://orcid.org/0000-0003-2555-6390","https://orcid.org/0000-0002-5550-9432","https://orcid.org/0000-0002-1832-9475","https://orcid.org/0000-0001-6080-7197"],"authorRor":["https://ror.org/045wgfr59","https://ror.org/03wcc3744"],"catalogue":"eidc","description":"In 2021 and 2022 a total of 60 broadleaved woodland restoration sites from Central Scotland (2021) and English Midlands (2022) and a further six wildcard sites made up of ancient woodlands (2 in Scotland and 2 in England) and rewilding sites (2 in England) were surveyed to calculate metrics of ecological complexity from biodiversity and habitat structure data. In each woodland, we monitored ground flora (surveyed using quadrats), adult trees (within circular plots), tree seedlings and saplings (transects), volume of deadwood (measured within transects), canopy cover estimations, invertebrates on understorey vegetation (surveyed by tray beating) and (mostly) flying invertebrates (surveyed using Malaise traps).  Information on site characteristics were collected, including age of the restoration site, former land-use and features of the surrounding landscape.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V006444/1"],"identifier":"8c997943-1f90-4897-87b3-491eaef534ec","incomingCitationCount":0,"givenName":["E.","K.","M.","K.J."],"familyName":["Waddell","Fuentes-Montemayor","Watts","Guy","Park"],"fullName":["Waddell, E.","Fuentes-Montemayor, E.","Watts, K.","Guy, M.","Park, K.J."],"keyword":["Scotland","England","Biodiversity"],"keywordsPlace":["Scotland","England"],"keywordsTheme":["Biodiversity"],"licence":"Open government licence","lineage":"Basic field instruments were used to mark plot positions (GPS), set out the plots (20 m tape measures), measure the adult trees and volume of deadwood (diameter at breast height (DBH) measuring tape) and collect invertebrate samples (tray beating kit and Malaise trap). \nIn each site, five circular plots (radius 10 m) were established with their centres randomly decided in advance using ArcGIS. Sampling of our 30 Scottish woodland restorations sites occurred in 2021, for our 30 English woodland restoration sites and our six wildcards, sampling occurred in 2022.  Data processing and lab-based identification continued into 2023.  Plants:  Ten 2 x 2 m quadrats were undertaken, two per circular plot.  The presence or absence of all vascular plant species found within the quadrat was recorded. Tree richness and structure:  The diameter-at-breast height (dbh; 1.3m) was recorded for all large trees ≥7 cm dbh within the 10 m radius plot and all small trees ≥4<7 cm dbh were measured within a sub-plot of 3 m radius. All trees were identified to genus. Tree sapling and seedlings: Tree saplings <4 cm dbh and above 50 cm in height were identified to genus and the number of individuals counted within 1 m either side of a 20 m transect running through the plot centre, with tree seedlings below 50 cm in height identified and counted within 0.5 m either side the 20 m transect. Deadwood: In each plot, all deadwood within a 4 x 20 m transect running North-South was measured and both the rate of decay and type of deadwood recorded. Canopy cover: In each plot, three canopy cover measurements were taken at the plot centre and above each quadrat (15 per site) using ‘PercentageCover’ application (available to download for iOS devices at percentagecover.com). Understorey invertebrates: Invertebrate communities in trees (>1.5 m in height) were sampled using beating trays (110×86 cm tray and 10 seconds beating) at two points per plot (n=10/site). Each woodland was surveyed twice (c. 8 weeks apart).  Invertebrates in Malaise traps: A Malaise trap was deployed twice in each woodland for one week at a time to survey (mostly) flying invertebrates. Site characteristics:  Site location was recorded using GPS.  Information on site history (including site age and former land-use) was recorded based on historic maps and information from landowners.  Surrounding land use cover was recorded based on the UCKCEH Landcover Map.\nAll field workers had previous experience in either botany or entomology as well as undergoing extensive training in the species encounter.  Data was collected in the field using pre-prepared data sheets. Data sheets were checked both visually before digital data entry, and any suspected errors were checked with raw field data sheets.  \nNot all identifications are to species level with this varying depending on taxonomic expertise. \n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0003-2555-6390","https://orcid.org/0000-0002-5550-9432","https://orcid.org/0000-0002-1832-9475","https://orcid.org/0000-0001-6080-7197"],"organisation":["University of Stirling","Forest Research","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8c997943-1f90-4897-87b3-491eaef534ec","10.5285/8c997943-1f90-4897-87b3-491eaef534ec"],"resourceStatus":"Embargoed","resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/03wcc3744","https://ror.org/04xw4m193"],"state":"published","title":"Insect, plant and tree data from woodland restoration sites in Central Scotland, 2021 and English Midlands, 2022 ","topic":["0/Biodiversity/"],"version":1.0,"view":["public","shofer"],"shortenedDescription":"In 2021 and 2022 a total of 60 broadleaved woodland restoration sites from Central Scotland (2021) and English Midlands (2022) and a further six wildcard sites made up of ancient woodlands (2 in Scotland and 2 in England) and rewilding sites (2 in England) were surveyed..."},{"publicationDate":"2024-08-09T00:00:00.000+00:00","authorAffiliation":["University of Stirling"],"authorGivenName":["R.","L.","H.L.","M.","S."],"authorFamilyName":["Metcalf","Messer","White","Ormsby","Matallana-Surget","Quilliam"],"authorFullName":["Metcalf, R.","Messer, L.","White, H.L.","Ormsby, M.","Matallana-Surget, S.","Quilliam, R."],"authorOrcid":["https://orcid.org/0000-0002-1463-427X","https://orcid.org/0000-0001-7020-4410"],"authorRor":["https://ror.org/045wgfr59"],"catalogue":"eidc","description":"This dataset holds realistic environmental concentrations of potential pathogens colonising microplastic beads (nurdles) collected from ten Scottish beaches. Observed measures include concentrations and the present genes of Klebsiella bacteria isolated from the nurdles, as well as the salinity, electrical conductivity, turbidity, and polymer composition of the nurdles. \n\nIn addition, an infection experiment was conducted to measure the virulence of the Klebsiella bacteria. Galleria melonella larvae were infected with the isolated Klebsiella bacteria and the number of living larvae was recorded. \n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S005196/1","NE/V005847/1"],"identifier":"fdd72810-a57f-444f-83cf-f2351ef4c940","incomingCitationCount":0,"givenName":["R.","L.","H.L.","M.","S."],"familyName":["Metcalf","Messer","White","Ormsby","Matallana-Surget","Quilliam"],"fullName":["Metcalf, R.","Messer, L.","White, H.L.","Ormsby, M.","Matallana-Surget, S.","Quilliam, R."],"keyword":["Environmental survey","Pollution","public health","plastic pollution","human pathogens","plastisphere","antimicrobial resistance","virulence"],"keywordsTheme":["Environmental survey","Pollution"],"keywordsOther":["public health","plastic pollution","human pathogens","plastisphere","antimicrobial resistance","virulence"],"licence":"Open government licence","lineage":"Microplastic beads were collected from ten Scottish beaches (Erskine, Yellowcraig, Largs, Irvine, Ayr, Turnberry, Montrose, Broughty Ferry, Portobello and Eyemouth) and bacteria were removed for quantification of target bacteria. Bacteria were quantified using selective media and positive colony-forming units (CFU) were enumerated. \n\nWater temperature and salinity at each site were also measured with a thermometer and a salinity refractometer (RGBS).\n\nFourier Transform Infrared Spectrometry (FTIR) was conducted on a Thermo Scientific Nicolet is50 FTIR to identify the polymer composition of the nurdles.\n\nThe virulence of the isolated Klebsiella was studied for one of the sites, Brought Ferry. Galleria mellonella model of infection was used to determine the virulence of each of the selected Klebsiella strains following their isolation from the microplastic beads and sand. After injection, larvae were incubated at and inspected 24, 48 and 72 h post-injection; larvae were considered dead when they did not respond to touch stimuli.\n","locations":["POLYGON((-7.796 54.677, -7.796 58.005, -1.081 58.005, -1.081 54.677, -7.796 54.677))"],"orcid":["https://orcid.org/0000-0002-1463-427X","https://orcid.org/0000-0001-7020-4410"],"organisation":["University of Stirling","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/fdd72810-a57f-444f-83cf-f2351ef4c940","10.5285/fdd72810-a57f-444f-83cf-f2351ef4c940"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Related omic data is stored on the National Center for Biotechnology Information"],"title":"Nurdle characteristics with associated bacterial concentrations and virulence of Klebsiella isolates from Scottish beaches, 2022","topic":["0/Environmental survey/","0/Pollution/"],"version":1.0,"view":["public","elsdhi"],"shortenedDescription":"This dataset holds realistic environmental concentrations of potential pathogens colonising microplastic beads (nurdles) collected from ten Scottish beaches. Observed measures include concentrations and the present genes of Klebsiella bacteria isolated from the nurdles,..."},{"publicationDate":"2025-05-02T00:00:00.000+00:00","authorAffiliation":["University of Stirling"],"authorGivenName":["L","H","R","M","C"],"authorFamilyName":["Woodford","White","Fellows","Ormsby","Pow","Quilliam"],"authorFullName":["Woodford, L.","White, H.","Fellows, R.","Ormsby, M.","Pow, C.","Quilliam, R."],"authorOrcid":["https://orcid.org/0000-0003-2530-2120"],"catalogue":"eidc","description":"This dataset contains mesocosm experimental data quantifying the ability of the bacterium Salmonella enterica Serovar Typhimurium (S. Typhimurium) to persist on microplastic beads in podzol and loamy soil. Persistence was determined through measuring surviving colony forming units (CFUs) of S. Typhimurium on the plastics after destructive sampling of the mesocosm jars. The results of a  flooding and leachate experiment are also included, containing transfer potential and leachate gradients of S. Typhimurium in each soil under ambient, and flooding conditions. Water was added to soil columns containing the microbeads to simulate flooding, and the CFUs in the water and on virgin plastics were measured to determine transfer potential. In the persistence experiment samples were measured on days 1, 2, 3, 4, 7, 10, 14, 21, 28 and 35,  and in the transfer and leachate experiments samples were measured after 7, 14 and 21 days, with four replicates being taken at each time point.\n\nThis dataset was created as part of a study investigating how human pathogens enter agricultural environments via flooding or contaminated irrigation, and to determine the survivability of S. Typhimurium in these soils. This work is supported by the National Environmental Research Council (NE/V005847/1).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V005847/1"],"identifier":"0bfdfa23-15f8-4ffd-b1dc-e77178af0304","incomingCitationCount":0,"givenName":["Luke","L","H","R","M","C"],"familyName":["Woodford","White","Fellows","Ormsby","Pow","Quilliam"],"fullName":["Woodford, L.","White, H.","Fellows, R.","Ormsby, M.","Pow, C.","Quilliam, R."],"keyword":["Environmental risk","Pollution","Soil","Water quality","plastic pollution","human pathogens","flooding","plastisphere","leachate","salmonella","mesocosm experiment"],"keywordsTheme":["Environmental risk","Pollution","Soil","Water quality"],"keywordsOther":["plastic pollution","human pathogens","flooding","plastisphere","leachate","salmonella","mesocosm experiment"],"licence":"Open government licence","lineage":"Mesocosm experiments were designed in two stages. For the persistence experiment jars were filled with two soil types and microplastic beads were mixed with the soils and left. At each time point destructive sampling was used to recover the beads and measure the surviving CFUs of S. Typhimurium on the plastics. In the flooding and leachate experiment, water was added to columns containing beads and the CFUs recovered in the water was recorded (flooding) and CFUs on virgin plastics was used to measure transfer. In the persistence experiment samples were measured on days 1, 2, 3, 4, 7, 10, 14, 21, 28 and 35,  and  in the transfer and leachate experiments samples were measured after 7, 14 and 21 days, with four replicates being taken each at each time point.\n","orcid":["https://orcid.org/0000-0003-2530-2120"],"organisation":["University of Stirling","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0bfdfa23-15f8-4ffd-b1dc-e77178af0304","10.5285/0bfdfa23-15f8-4ffd-b1dc-e77178af0304"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Woodford, L., Fellows, R., White, H. L., Ormsby, M. J., Pow, C. J., & Quilliam, R. S. (2024). Survival and transfer potential of Salmonella enterica serovar Typhimurium colonising polyethylene microplastics in contaminated agricultural soils. In Environmental Science and Pollution Research (Vol. 31, Issue 39, pp. 51353–51363). Springer Science and Business Media LLC. "],"title":"Survival rates and transfer potential measurements of Salmonella enterica Serovar Typhimurium colonising polyethylene microplastics in contaminated agricultural soils","topic":["0/Environmental risk/","0/Pollution/","0/Soil/","0/Water quality/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"This dataset contains mesocosm experimental data quantifying the ability of the bacterium Salmonella enterica Serovar Typhimurium (S. Typhimurium) to persist on microplastic beads in podzol and loamy soil. Persistence was determined through measuring surviving colony..."},{"publicationDate":"2021-04-13T00:00:00.000+00:00","authorAffiliation":["University of Stirling","UK Centre for Ecology & Hydrology"],"authorGivenName":["J.","D.","N.A.","K.","M."],"authorFamilyName":["Burrows","Copplestone","Beresford","Raines","Tinsley"],"authorFullName":["Burrows, J.","Copplestone, D.","Beresford, N.A.","Raines, K.","Tinsley, M."],"authorOrcid":["https://orcid.org/0000-0002-0239-4053","https://orcid.org/0000-0002-1468-9545","https://orcid.org/0000-0002-8722-0238","https://orcid.org/0000-0002-7864-0126","https://orcid.org/0000-0002-7715-1259"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains information on the volume of nectar consumed, metabolic rate and activity of bumblebees that were exposed to environmentally relevant dose rates of ionising radiation at the University of Stirling. Data is for two connected experiments collected via direct observation in a laboratory setting. The first experiment investigates variables during and after 10-days of radiation exposure and the second investigates these variables under a dose rate gradient.\n\nFunding for this work was via the TREE project funded by the NERC, Environment Agency and Radioactive Waste Management Ltd. under the RATE programme.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"0da32d7f-eea1-4200-8fde-3a32d0d9ed05","incomingCitationCount":0,"givenName":["J.","D.","N.A.","K.","M.","Jess"],"familyName":["Burrows","Copplestone","Beresford","Raines","Tinsley"],"fullName":["Burrows, J.","Copplestone, D.","Beresford, N.A.","Raines, K.","Tinsley, M."],"keyword":["Radioecology","Ionising radiation","Life history","Insects","Resource allocation","Pollinator","Energy budget","Eco-toxicology","Radiological contamination"],"keywordsTheme":["Radioecology"],"keywordsOther":["Ionising radiation","Life history","Insects","Resource allocation","Pollinator","Energy budget","Eco-toxicology","Radiological contamination"],"licence":"Open government licence","lineage":"All data were generated by the authors. Radiation dose rates were verified using dosimeters that were placed at each bumblebee position prior to the experiment. Environmental variables such as temperature and humidity were monitored with nine data loggers before, during and after the experiment. All calculations were checked for errors before data was accepted.","orcid":["https://orcid.org/0000-0002-0239-4053","https://orcid.org/0000-0002-1468-9545","https://orcid.org/0000-0002-8722-0238","https://orcid.org/0000-0002-7864-0126","https://orcid.org/0000-0002-7715-1259"],"organisation":["University of Stirling","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/0da32d7f-eea1-4200-8fde-3a32d0d9ed05","10.5285/0da32d7f-eea1-4200-8fde-3a32d0d9ed05"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Nectar consumption, metabolic rate and activity datasets for bumblebees exposed to ecologically relevant radiation dose rates","topic":["0/Radioecology/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains information on the volume of nectar consumed, metabolic rate and activity of bumblebees that were exposed to environmentally relevant dose rates of ionising radiation at the University of Stirling. Data is for two connected experiments collected..."},{"publicationDate":"2025-06-12T00:00:00.000+00:00","authorAffiliation":["University of Stirling"],"authorGivenName":["Michael","Luke","Rosie","Hannah","Richard"],"authorFamilyName":["Ormsby","Woodford","Fellows","White","Quilliam"],"authorFullName":["Ormsby, M.","Woodford, L.","Fellows, R.","White, H.","Quilliam, R."],"authorOrcid":["https://orcid.org/0000-0002-3991-2336","https://orcid.org/0000-0003-2530-2120","https://orcid.org/0009-0003-8928-2189","https://orcid.org/0000-0001-9842-7798","https://orcid.org/0000-0001-7020-4410"],"authorRor":["https://ror.org/045wgfr59"],"catalogue":"eidc","description":"This dataset contains information relating to the rate of colonisation of E. coli O157 on plastic and banana leaf, under simulated environmental conditions. The data encompass bacterial strain identity, material type, timepoints (days), temperature (°C), and bacterial concentration (CFU/ml). Data were sampled over defined periods using culture-based approaches.\n\nThis work was supported by the UKRI Natural Environment Research Council (NERC) as part of the GCRF SPACES project [grant number NE/V005847/1] and the Plastic Vectors project, “Microbial hitch-hikers of marine plastics: the survival, persistence & ecology of microbial communities in the ‘Plastisphere’” [grant number NE/S005196/1].","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/V005847/1","NE/S005196/1"],"identifier":"abbc69c2-b799-4892-a339-fb1ffa4ea2f0","incomingCitationCount":0,"givenName":["Michael","Luke","Rosie","Hannah","Richard"],"familyName":["Ormsby","Woodford","Fellows","White","Quilliam"],"fullName":["Michael Ormsby","Ormsby, M.","Woodford, L.","Fellows, R.","White, H.","Quilliam, R."],"keyword":["Environmental risk","Water quality","Plastisphere","Biofilm","Wastewater","E. coli O157","AMR"],"keywordsTheme":["Environmental risk","Water quality"],"keywordsOther":["Plastisphere","Biofilm","Wastewater","E. coli O157","AMR"],"licence":"Open government licence","lineage":"Data were generated through laboratory experiments investigating the persistence,  and survival of a clinically relevant strain of E. coli. Bacteria were cultured on materials (Banana Leaf and HDPE) and analysed for persistence over time. Materials (Banana Leaf and HDPE) were prepared and inoculated under controlled laboratory conditions. E. coli strains were inoculated onto materials in nutrient-rich and surface water environments. Sampling was taken at defined time points (7, 14, 21, 28 days).  The experiments utilised standard laboratory equipment such as 96-well plates and incubators. Instrumentation used for bacterial enumeration, including the plate reader, was calibrated according to standard laboratory protocols. The data underwent rigorous quality control through replication (biological triplicates), statistical analysis (ANOVA), and controlled experimental conditions (e.g., temperature and material consistency). Statistical methods including ANOVA and Tukey’s post-hoc tests were applied to assess treatment effects and survival outcomes.\n","orcid":["https://orcid.org/0000-0002-3991-2336","https://orcid.org/0000-0003-2530-2120","https://orcid.org/0009-0003-8928-2189","https://orcid.org/0000-0001-9842-7798","https://orcid.org/0000-0001-7020-4410"],"organisation":["University of Stirling","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/abbc69c2-b799-4892-a339-fb1ffa4ea2f0","10.5285/abbc69c2-b799-4892-a339-fb1ffa4ea2f0"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Stirling"],"ror":["https://ror.org/045wgfr59","https://ror.org/04xw4m193"],"state":"published","title":"Colonisation rates of E. coli on plastic and banana leaf under simulated environmental conditions","topic":["0/Environmental risk/","0/Water quality/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains information relating to the rate of colonisation of E. coli O157 on plastic and banana leaf, under simulated environmental conditions. The data encompass bacterial strain identity, material type, timepoints (days), temperature (°C), and bacterial..."},{"publicationDate":"2021-06-08T00:00:00.000+00:00","authorAffiliation":["University of Stirling","NEIF Radiocarbon Laboratory"],"authorGivenName":["F.X.","J.A.","M."],"authorFamilyName":["Joly","Subke","Garnett"],"authorFullName":["Joly, F.X.","Subke, J.A.","Garnett, M."],"authorOrcid":["https://orcid.org/0000-0002-4453-865X","https://orcid.org/0000-0001-9244-639X","https://orcid.org/0000-0001-6486-2126"],"authorRor":["https://ror.org/045wgfr59"],"catalogue":"eidc","description":"The dataset contains the radiocarbon age of soil organic matter fractions collected along grassland-to-forest conversion chronosequences across Scotland. Soil samples were collected in summer 2018. \n\nIn summer 2019, soil samples were fractionated and the radiocarbon age of bulk soil and soil fraction samples determined by accelerator mass spectrometry.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/P011098/1"],"identifier":"0dd45f6f-0536-4ee3-9932-58bac019d2c6","incomingCitationCount":0,"givenName":["F.X.","J.A.","M.","Francois-Xavier"],"familyName":["Joly","Subke","Garnett"],"fullName":["Joly, F.X.","Subke, J.A.","Garnett, M.","Joly, F."],"keyword":["Grasslands","Scot pine","Coniferous forests","Soil carbon","Soil organic matter","Soil fractions","Radiocarbon","Scotland"],"keywordsOther":["Grasslands","Scot pine","Coniferous forests","Soil carbon","Soil organic matter","Soil fractions","Radiocarbon","Scotland"],"licence":"Open government licence","lineage":"All data were generated by the authors. 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