{"numFound":15,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=topic%7C0%2FEvolutionary+ecology%2F","results":[{"publicationDate":"2021-11-29T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["K.E.","J.J.","J.A."],"authorFamilyName":["Criswell","Head","Gillis"],"authorFullName":["Criswell, K.E.","Head, J.J.","Gillis, J.A."],"authorOrcid":["https://orcid.org/0000-0002-4004-0192","https://orcid.org/0000-0002-2237-6901","https://orcid.org/0000-0003-2062-3777"],"catalogue":"eidc","description":"CT scans of adult little skates (Leucoraja erinacea). These scans consist of series of tiff images that can be imported into CT segmenting software to reconstruct their shape in three dimensions. Supplemental files include CT scanning parameters, landmark coordinates for each vertebra in each skate, up to vertebra 70, as well as an R script with code for analysing vertebral shape using morphometrics and segmented linear regression tests.\n\nComputed tomography scans of three adult little skates were obtained in order to quantitatively study vertebral column morphology and regionalization. The skate fins were removed to facilitate shipping to our scanning facility, and so the scans include only the head, gill basket, and axial column. The specimens are now housed in the University of Cambridge Museum of Zoology (specimen identification numbers 2021.50.1, 20201.50.2, and 2021.50.3). ","documentType":"GEMINI_DOCUMENT","identifier":"9d7810c7-92af-47b2-81ec-365aafc39691","incomingCitationCount":0,"givenName":["K.E.","J.J.","J.A."],"familyName":["Criswell","Head","Gillis"],"fullName":["Criswell, K.E.","Head, J.J.","Gillis, J.A."],"keyword":["Biodiversity","Evolutionary ecology","Chondrichthyan","Leucoraja erinacea","Little skate","anatomy","fish","morphology"],"keywordsTheme":["Biodiversity","Evolutionary ecology"],"keywordsOther":["Chondrichthyan","Leucoraja erinacea","Little skate","anatomy","fish","morphology"],"licence":"Open government licence","lineage":"The skates were collected by the Marine Biological Laboratory in Woods Hole, MA, USA, in the waters off the Massachusetts coast in the summer of 2019. The specimens were fixed in 4% paraformaldehyde for one week, rinsed in water, and stored in 70% ethanol. Computed tomography scans were obtained at the Cambridge Biotomography Centre by Keturah Smithson, a trained CT technician, using a Nikon  XTEK H 225 ST MicroCT scanner. Post-processing to optimise CT reconstructions and minimise scan artefacts was performed in Nikon’s CT-Pro program, and scan reslicing was performed using VG STUDIOMAX (Volume Graphics).","orcid":["https://orcid.org/0000-0002-4004-0192","https://orcid.org/0000-0002-2237-6901","https://orcid.org/0000-0003-2062-3777"],"organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/9d7810c7-92af-47b2-81ec-365aafc39691","10.5285/9d7810c7-92af-47b2-81ec-365aafc39691"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Morphological and morphometric data on the axial skeleton of the little skate, Leucoraja erinacea","topic":["0/Biodiversity/","0/Evolutionary ecology/"],"version":1.0,"view":["public","jualob"],"shortenedDescription":"CT scans of adult little skates (Leucoraja erinacea). These scans consist of series of tiff images that can be imported into CT segmenting software to reconstruct their shape in three dimensions. Supplemental files include CT scanning parameters, landmark coordinates..."},{"publicationDate":"2024-05-17T00:00:00.000+00:00","authorAffiliation":["Jazz Pharmaceuticals","University of Liverpool","Woodland Trust","Lancaster University"],"authorGivenName":["C.Z.","G.A.","J.A.","E.J.","C.J.","S.","R."],"authorFamilyName":["Hahn","Airey","Crawford","Sayer","Stevens","Paterson","Whitlock"],"authorFullName":["Hahn, C.Z.","Airey, G.A.","Crawford, J.A.","Sayer, E.J.","Stevens, C.J.","Paterson, S.","Whitlock, R."],"authorOrcid":["https://orcid.org/0000-0002-8399-4682","https://orcid.org/0000-0002-3322-4487","https://orcid.org/0000-0002-2390-1763","https://orcid.org/0000-0002-1307-2981","https://orcid.org/0000-0002-7067-8365"],"catalogue":"eidc","description":"This dataset contains information on the performance of soil microbial communities (from field soil washes), soil synthetic microbial populations (from isolates within a single bacterial genus) and plants each originating from either drought and control long-term climate treatments at the Buxton Climate Change Impacts Lab (BCCIL), in a microcosm experiment. Plant and microbe provenance were manipulated to effect different combinations of climate ancestry in different microcosm pots. In addition, a factorial watering treatment (control or drought treatment) was applied. Isolates of Pseudomonas used to found experimental populations of soil microbes had been sampled from the roots of Festuca ovina in the control and drought treatments at BCCIL. \n\nVariables measured included soil respiration, plant traits, plant available soil nutrients, soil enzyme activities, soil respiration responses to substrate addition (in a substrate utilisation profiling assay), and soil respiration responses to drought (in a substrate utilisation profiling assay). ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/P013392/1"],"identifier":"e09db3ad-c54a-4f99-bf3c-37ee63fc2998","incomingCitationCount":0,"givenName":["C.Z.","G.A.","J.A.","E.J.","C.J.","S.","R."],"familyName":["Hahn","Airey","Crawford","Sayer","Stevens","Paterson","Whitlock"],"fullName":["Hahn, C.Z.","Airey, G.A.","Crawford, J.A.","Sayer, E.J.","Stevens, C.J.","Paterson, S.","Whitlock, R."],"keyword":["Evolutionary ecology","Bacillus","soil bacteria","Pseudomonas","soil ecology","soil","experimental evolution","drought","grassland","climate change"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["Bacillus","soil bacteria","Pseudomonas","soil ecology","soil","experimental evolution","drought","grassland","climate change"],"licence":"Open government licence","lineage":"Bacterial isolates from BCCIL (44 from genus Pseudomonas) were raised in liquid media and used to create artificial populations of isolates representing the drought treatment at BCCIL (22 isolates equally represented by titre) and the control treatment at BCCIL (22 isolates equally represented). In addition, soil wash inoculum representing the entire soil microbial community at Buxton was prepared either from fresh drought treatment or control treatment soil from BCCIL. These synthetic bacterial populations and climate adapted microbial communities were used to inoculate sterilised soil-plant microcosms in pots (~1000 ml soil volume). Soil was autoclaved before inclusion in the pots while plants (Festuca ovina with ancestry in different treatments at BCCIL) were surface sterilised using a bleach solution. \n\nThe F. ovina plants used in the experiment had two parents who were either both sampled from the drought treatment at Buxton (11 clonal lines, representing plant drought adaptation) or both sampled from the control treatment at Buxton (11 clonal lines, representing plant control treatment adaptation). Each of the populations of plants representing the two climate ancestries were exposed to a total of eight treatments. \n\nFirst, the type of inoculation (either artificial Pseudomonas population or field soil-wash community) was varied (two levels). Second the origin of the soil microbes was varied (drought or control; two levels). Finally a watering treatment was imposed (control or drought; two levels). These treatments were combined factorially for a total of eight treatment combinations. Experimental replicates were assigned randomly to tables (blocks) in a polytunnel. \n\nMicrocosms in the control watering treatment were topped up to field capacity, whereas those in the drought treatment were not watered (with a target volumetric soil content of 5%). Substrate utilisation profiling was carried out by taking soil samples from the microcosms at the end of the experiment, which were amended with different substrates (water, glucose, cellulose, artificial root exudate) or experimentally dried in the lab prior to evaluation of respiration in MicroResp(TM) colourimetric microplates using a FLUOstar Omega spectrophotometer (BMG Labtech, Ortenberg, Germany) before to detect CO2 efflux. \n\nSoil respiration was measured with a Li Cor Li 8100 IRGA and Li Cor 8150 Multiplexer. Soil enzyme activity was measured via the addition of fluorescently labelled substrates to soil enzyme extractions with detection of fluorescence on a FLUOstar Omega spectrophotometer. Plant available nutrients were assessed using Plant Root Simulator probes (Western Ag). ","orcid":["https://orcid.org/0000-0002-8399-4682","https://orcid.org/0000-0002-3322-4487","https://orcid.org/0000-0002-2390-1763","https://orcid.org/0000-0002-1307-2981","https://orcid.org/0000-0002-7067-8365"],"organisation":["Jazz Pharmaceuticals","University of Liverpool","Woodland Trust","Lancaster University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e09db3ad-c54a-4f99-bf3c-37ee63fc2998","10.5285/e09db3ad-c54a-4f99-bf3c-37ee63fc2998"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Liverpool"],"ror":["https://ror.org/04xw4m193"],"state":"published","title":"Responses of drought-adapted plants and soil microbial communities to drought conditions in plant-soil microcosms","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","glenn"],"shortenedDescription":"This dataset contains information on the performance of soil microbial communities (from field soil washes), soil synthetic microbial populations (from isolates within a single bacterial genus) and plants each originating from either drought and control long-term climate..."},{"publicationDate":"2015-07-22T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Institute of Freshwater Ecology"],"authorGivenName":["Laurence","A.E.","A."],"authorFamilyName":["Carvalho","Bailey-Watts","Kirika"],"authorFullName":["Carvalho, L.","Bailey-Watts, A.E.","Kirika, A."],"authorOrcid":["https://orcid.org/0000-0002-9768-9902"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"The dataset comprises counts of four planktonic diatom taxa collected from Loch Leven from 1968-2007 by staff at the Centre for Ecology & Hydrology and its predecessor bodies, as part of their long-term monitoring programme of the lake. Count units are the density of cells per millilitre of water for four species; Asterionella formosa, Aulacoseira spp, Diatoma spp, Unicellular centric diatoms. Counts are of weekly to monthly frequency and from a single sampling station","documentType":"GEMINI_DOCUMENT","identifier":"de5ca6cc-02e9-42bc-a39e-80ec8acbffba","incomingCitationCount":1,"givenName":["Laurence","A.E.","A."],"familyName":["Carvalho","Bailey-Watts","Kirika"],"fullName":["Carvalho, L.","Bailey-Watts, A.E.","Kirika, A."],"keyword":["Loch Leven","Kinross","Scotland","UK","Evolutionary ecology","Unicellular centric diatoms","diatom"],"keywordsPlace":["Loch Leven","Kinross","Scotland","UK"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["Unicellular centric diatoms","diatom"],"licence":"Open government licence","lineage":"Validation of data was in line with protocols referenced in the supporting documents. The dataset was quality controlled by all three authors who have worked on the Loch Leven long-term monitoring project since 1968. Dr Tony Bailey-Watts counted all the pre-2001 data and this was checked and collated by Alex Kirika.  Dr Laurence Carvalho counted and checked all the data from 2001-2007.","locations":["POLYGON((-3.422 56.174, -3.422 56.223, -3.325 56.223, -3.325 56.174, -3.422 56.174))"],"orcid":["https://orcid.org/0000-0002-9768-9902"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","Institute of Freshwater Ecology","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["1434722728144","https://catalogue.ceh.ac.uk/id/de5ca6cc-02e9-42bc-a39e-80ec8acbffba","10.5285/de5ca6cc-02e9-42bc-a39e-80ec8acbffba"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Loch Leven diatom counts 1968-2007","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","dcmo"],"shortenedDescription":"The dataset comprises counts of four planktonic diatom taxa collected from Loch Leven from 1968-2007 by staff at the Centre for Ecology & Hydrology and its predecessor bodies, as part of their long-term monitoring programme of the lake. Count units are the density of..."},{"publicationDate":"2017-10-20T00:00:00.000+00:00","authorAffiliation":["University of Cambridge","University of Zurich","University of Jyväskylä"],"authorGivenName":["R","H","J"],"authorFamilyName":["Thorogood","Kokko","Mappes"],"authorFullName":["Thorogood, R.","Kokko, H.","Mappes, J."],"authorOrcid":["https://orcid.org/0000-0001-5010-2177","https://orcid.org/0000-0002-5772-4881","https://orcid.org/0000-0002-1117-5629"],"authorRor":["https://ror.org/013meh722","https://ror.org/02crff812","https://ror.org/05n3dz165"],"catalogue":"eidc","description":"The data set describes foraging decisions by great tits (Parus major), held in temporary captivity.  Data were collected from birds caught from forest at the University of Jyväskylä Research Station, Konnevesi (62°37.7'N 026°17'E), Finland, and were collected during the winter of 2013-2014.  Birds were presented with (1) two different coloured plastic cups, or (2) two different artificial prey (almond pieces inside a paper packet and printed with a black and white symbol). One symbol was made bitter-tasting by soaking the almond piece in chloroquine, and learning behaviour was recorded over three trials.  Half of the birds in both experiments were presented videos of a demonstrator great tit, to provide social information about prey characteristics and unpalatability.  Data were collected to test hypotheses about the evolutionary consequences of social information use by predators as part of a NERC-funded Independent Research Fellowship.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/K00929X/1"],"identifier":"db55406b-c9a1-4a9e-88c2-2abbcb4bcad3","incomingCitationCount":2,"givenName":["Rose","R","H","J"],"familyName":["Thorogood","Kokko","Mappes"],"fullName":["Thorogood, R.","Kokko, H.","Mappes, J."],"keyword":["Konnevesi","Animal behaviour","Evolutionary ecology","Wild bird","foraging","prey defence","aposematism","Great tit","Parus major","animal behaviour","bird","evolution"],"keywordsPlace":["Konnevesi"],"keywordsTheme":["Animal behaviour","Evolutionary ecology"],"keywordsOther":["Wild bird","foraging","prey defence","aposematism","Great tit","Parus major","animal behaviour","bird","evolution"],"licence":"Open government licence","lineage":"Data on foraging decisions of wild great tits (Paris major), held in captivity temporarily, were collected between 17th October 2013 - 24th January 2014 in central Finland.  Data were generated during two procedures, with 14 out of 56 birds used to generate both parts of the dataset. Half of the birds were presented with video playback before the foraging test to provide social information about food options. ","locations":["POLYGON((18.584 58.655, 18.584 65.608, 32.416 65.608, 32.416 58.655, 18.584 58.655))"],"orcid":["https://orcid.org/0000-0001-5010-2177","https://orcid.org/0000-0002-5772-4881","https://orcid.org/0000-0002-1117-5629"],"organisation":["University of Cambridge","University of Zurich","University of Jyväskylä","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/db55406b-c9a1-4a9e-88c2-2abbcb4bcad3","10.5285/db55406b-c9a1-4a9e-88c2-2abbcb4bcad3"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/02crff812","https://ror.org/05n3dz165","https://ror.org/04xw4m193"],"state":"published","title":"Foraging behaviour of Parus major held in temporary captivity","topic":["0/Animal behaviour/","0/Evolutionary ecology/"],"version":1.0,"view":["public","tinzha"],"shortenedDescription":"The data set describes foraging decisions by great tits (Parus major), held in temporary captivity.  Data were collected from birds caught from forest at the University of Jyväskylä Research Station, Konnevesi (62°37.7'N 026°17'E), Finland, and were collected during..."},{"publicationDate":"2024-01-15T00:00:00.000+00:00","authorAffiliation":["University of Cambridge"],"authorGivenName":["K.E.","J.J."],"authorFamilyName":["Criswell","Head"],"authorFullName":["Criswell, K.E.","Head, J.J."],"authorRor":["https://ror.org/013meh722"],"catalogue":"eidc","description":"Computed tomography (CT) scans of 212 museum specimens, including mostly cartilaginous and bony fishes as well as several reptiles and amphibians, were obtained to quantitatively study vertebral column morphology and regionalisation. The specimens are housed in the University of Cambridge Museum of Zoology or the Natural History Museum in London (specimen identification numbers can be found in the supporting documentation). \n\nThese data consist of \n1) series of tiff images that can be imported into CT segmenting software to reconstruct their shape in three dimensions; \n2) STL files of each vertebra for a subset of the specimens scanned;\n3) 3D landmark coordinates or measurements for each vertebra for a subset of taxa scanned;\n4) tables of results from regionalisation analyses, and\n5) photographs of eight fossil fish specimens\n\nSupplemental files include details of the data collection procedures, specimen identification numbers and updated taxonomy, and CT scanning parameters for all scans.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S000739/1"],"identifier":"1c76e443-da02-4bc4-a041-0f79adc016be","incomingCitationCount":0,"givenName":["K.E.","J.J."],"familyName":["Criswell","Head"],"fullName":["Criswell, K.E.","Head, J.J."],"keyword":["Evolutionary ecology","morphology","fish","anatomy","axial regionalisation","vertebral column"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["morphology","fish","anatomy","axial regionalisation","vertebral column"],"licence":"Open government licence","lineage":"Computed tomography scans of museum specimens were obtained at the Cambridge Biotomography Centre using a Nikon  XTEK H 225 ST MicroCT scanner. Post-processing to optimise CT reconstructions and minimise scan artefacts was performed in Nikon’s CT-Pro program, and scan reslicing was performed using VG STUDIOMAX (Volume Graphics). Segmentation of CT scans resulting STL files was performed in either Mimics (Materialise) or VG STUDIOMAX (Volume Graphics). Landmark coordinates of vertebrae were plotted using Stratovan Checkpoint. Regionalisation analyses were conducted in the R software environment, with method details described in the supporting documentation for the data ","organisation":["University of Cambridge","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1c76e443-da02-4bc4-a041-0f79adc016be","10.5285/1c76e443-da02-4bc4-a041-0f79adc016be"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Cambridge"],"ror":["https://ror.org/013meh722","https://ror.org/04xw4m193"],"state":"published","supplementalName":["hox gene expression predicts tetrapod-like axial regionalization in the skate, Leucoraja erinacea"],"title":"Morphological and morphometric data on the axial skeletons of vertebrates from museum specimens","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","shar1"],"shortenedDescription":"Computed tomography (CT) scans of 212 museum specimens, including mostly cartilaginous and bony fishes as well as several reptiles and amphibians, were obtained to quantitatively study vertebral column morphology and regionalisation. The specimens are housed in the..."},{"publicationDate":"2019-02-05T00:00:00.000+00:00","authorAffiliation":["University of Liverpool","University of York"],"authorGivenName":["J.","D.W.","K."],"authorFamilyName":["Bro-Jorgensen","Franks","Meise"],"authorFullName":["Bro-Jorgensen, J.","Franks, D.W.","Meise, K."],"authorOrcid":["https://orcid.org/0000-0003-2899-8477","https://orcid.org/0000-0002-4832-7470","https://orcid.org/0000-0001-5184-8384"],"authorRor":["https://ror.org/04xs57h96","https://ror.org/04m01e293"],"catalogue":"eidc","description":"This dataset contains information about various aspects of the alarm communication network of African savannah herbivores. Data were collected in April 2015 and between September 2015 and October 2016 in the Masai Mara National Reserve, in southern Kenya (1°30’S, 35°10’E). Research focused on the 12 most common herbivore species in the ecosystem. For each of these species, the dataset provides information on vigilance rates, the probability to alarm call in response to different predators, the responsiveness to heterospecific alarm calls, as well as the relative abundance and grouping behaviour of species. Details on study species, study design and data analysis are provided in the supporting documentation. \n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/L007185/1"],"identifier":"cc0794f0-748a-42aa-b491-2f9b65c771a6","incomingCitationCount":2,"givenName":["Jakob","J.","D.W.","K."],"familyName":["Bro-Jorgensen","Franks","Meise"],"fullName":["Bro-Jorgensen, J.","Franks, D.W.","Meise, K."],"keyword":["Evolutionary ecology","Animal behaviour","Thomson gazelle","Gazella thomsonii","Grant gazelle","Gazella granti","Impala","Aepyceros melampus","Desert warthog","Common warthog","Phacochoerus aethiopicus","Ostrich","Struthio camelus","Topi","Tsessebe","Damaliscus lunatus","Hartebeest","Alcelaphus buselaphus","Blue wildebeest","Connochaetes taurinus","Plains zebra","Equus quagga","African buffalo","Syncerus caffer","Common eland","Tragelaphus oryx","Northern giraffe","Giraffa camelopardalis"],"keywordsTheme":["Evolutionary ecology","Animal behaviour"],"keywordsOther":["Thomson gazelle","Gazella thomsonii","Grant gazelle","Gazella granti","Impala","Aepyceros melampus","Desert warthog","Common warthog","Phacochoerus aethiopicus","Ostrich","Struthio camelus","Topi","Tsessebe","Damaliscus lunatus","Hartebeest","Alcelaphus buselaphus","Blue wildebeest","Connochaetes taurinus","Plains zebra","Equus quagga","African buffalo","Syncerus caffer","Common eland","Tragelaphus oryx","Northern giraffe","Giraffa camelopardalis"],"licence":"Open government licence","lineage":"The study was conducted in the Masai Mara National Reserve as part a joint study between the University of Liverpool and the University of York. Field data were collected by experienced observers following standardised protocols. Vigilance data were video-recorded and vigilance rates subsequently analysed in BORIS, the Behavioural Observation Research Interactive Software. Responses to predator dummies were categorized based on the occurrence of alarm calls within 5 minutes of predator detection. Playback experiments were video-recorded and analysed in BORIS using a clearly defined behavioural protocol. In each case, we excluded experiments that have been disturbed by approaching predators, humans or alarm calling heterospecifics (including alarm calling conspecifics in vigilance recordings). Species counts were conducted along a pre-defined track on three different study plains. Again, we excluded sightings of groups with predators close by. The full description of the methodology is available in the metadata file submitted with this data set. Data were entered within 48 hours of recording and checked for accidental typos and unusual values.","locations":["POLYGON((34.6 -1.503, 34.6 -1.071, 35.1 -1.071, 35.1 -1.503, 34.6 -1.503))"],"orcid":["https://orcid.org/0000-0003-2899-8477","https://orcid.org/0000-0002-4832-7470","https://orcid.org/0000-0001-5184-8384"],"organisation":["University of Liverpool","University of York","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/cc0794f0-748a-42aa-b491-2f9b65c771a6","10.5285/cc0794f0-748a-42aa-b491-2f9b65c771a6"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/04xs57h96","https://ror.org/04m01e293","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Meise, K., Franks, D. W., & Bro-Jørgensen, J. (2018). Multiple adaptive and non-adaptive processes determine responsiveness to heterospecific alarm calls in African savannah herbivores. Proceedings of the Royal Society B: Biological Sciences, 285(1882), 20172676"],"title":"Interspecific communication in African savannah herbivores","topic":["0/Evolutionary ecology/","0/Animal behaviour/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains information about various aspects of the alarm communication network of African savannah herbivores. Data were collected in April 2015 and between September 2015 and October 2016 in the Masai Mara National Reserve, in southern Kenya (1°30’S, 35°10’E)...."},{"publicationDate":"2013-06-25T00:00:00.000+00:00","authorAffiliation":["National Museums Scotland","University of Lethbridge","University of the West of Scotland","The Natural History Museum","University of Manchester","Imperial College London","University of Abertay"],"authorGivenName":["S. A.","A. N.","M. A.","E.","P. M.","A.","R.","R. L.","P."],"authorFamilyName":["Walsh","Iwaniuk","Knoll","Bourdon","Barrett","Milner","Nudds","Abel","Dello Sterpaio"],"authorFullName":["Walsh, S.A.","Iwaniuk, A.N.","Knoll, M.A.","Bourdon, E.","Barrett, P.M.","Milner, A.","Nudds, R.","Abel, R.L.","Dello Sterpaio, P."],"authorRor":["https://ror.org/00pxfwe85","https://ror.org/044j76961","https://ror.org/027m9bs27","https://ror.org/041kmwe10","https://ror.org/04mwwnx67"],"catalogue":"eidc","description":"This dataset comprises cast reconstructions of brain cavity space in 60 extant avian species, derived from X-ray micro computed-tomography scan image stacks. Each reconstruction was made using Materialise Mimics 14.11 to create volumetric models (brain cavity casts) that were then transformed into the polygon mesh stereolithograph (STL) files archived here. Brain cavity cast models are in most cases accompanied by casts of main vascular features (e.g., carotid arteries) and the olfactory nerves (CN I). A data file (Data_TableComma Separated Values) based on values reported in Table 1 of Walsh et al. (2013: doi:10.1371/journal.pone.0067176) is included that records volume values used in the original analysis, and coding of cerebellar flocculus morphology.","documentType":"GEMINI_DOCUMENT","identifier":"4e15f483-5b05-409e-acc0-5117fc24e90b","incomingCitationCount":1,"givenName":["Stig","S. A.","A. N.","M. A.","E.","P. M.","A.","R.","R. L.","P."],"familyName":["Walsh","Iwaniuk","Knoll","Bourdon","Barrett","Milner","Nudds","Abel","Dello Sterpaio"],"fullName":["Walsh, S.","Walsh, S.A.","Iwaniuk, A.N.","Knoll, M.A.","Bourdon, E.","Barrett, P.M.","Milner, A.","Nudds, R.","Abel, R.L.","Dello Sterpaio, P."],"keyword":["Evolutionary ecology","Animal phylogenetics","biological locomotion","bird flight","dinosaurs","paleobiology","vision","bird"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["Animal phylogenetics","biological locomotion","bird flight","dinosaurs","paleobiology","vision","bird"],"licence":"Open government licence","lineage":"Data were collected from avian osteological specimens held in the collections of National Museums Scotland, Edinburgh, and the Natural History Museum, London. These data were derived from X-ray micro-CT scans conducted using Nikon Metrology HMX ST 225 scanners at the University of Abertay, Dundee and the Natural History museum at resolutions of 12-149 µm. Voxel segmentation of brain cavity casts was conducted using Materialise Mimics 14.11 by two team members and volume values collected from these segmentations.","organisation":["National Museums Scotland","University of Lethbridge","University of the West of Scotland","The Natural History Museum","University of Manchester","Imperial College London","University of Abertay","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b","https://catalogue.ceh.ac.uk/id/4e15f483-5b05-409e-acc0-5117fc24e90b"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","ror":["https://ror.org/00pxfwe85","https://ror.org/044j76961","https://ror.org/027m9bs27","https://ror.org/041kmwe10","https://ror.org/04mwwnx67","https://ror.org/04xw4m193"],"state":"published","title":"Digital 3D models and measurements of avian brain cavity, blood vessel and nerve endocasts","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","kath"],"shortenedDescription":"This dataset comprises cast reconstructions of brain cavity space in 60 extant avian species, derived from X-ray micro computed-tomography scan image stacks. Each reconstruction was made using Materialise Mimics 14.11 to create volumetric models (brain cavity casts)..."},{"publicationDate":"2024-04-04T00:00:00.000+00:00","authorAffiliation":["University of Sheffield","Natural History Museum, London"],"authorGivenName":["G.H.","Z.K.","E.C.","T.","N.","A.P."],"authorFamilyName":["Thomas","Varley","Hughes","Guillerme","Cooper","Beckerman"],"authorFullName":["Thomas, G.H.","Varley, Z.K.","Hughes, E.C.","Guillerme, T.","Cooper, N.","Beckerman, A.P."],"authorOrcid":["https://orcid.org/0000-0002-1982-6051","https://orcid.org/0009-0003-6814-7279","https://orcid.org/0000-0003-4682-6257","https://orcid.org/0000-0003-4325-1275","https://orcid.org/0000-0003-4919-8655","https://orcid.org/0000-0002-4797-9143"],"authorRor":["https://ror.org/05krs5044","https://ror.org/039zvsn29"],"catalogue":"eidc","description":"The data consists of 3D surface scans of the beaks of 662 museum specimens of sixteen species (representing fifteen families of passerine birds: Fringillidae, Ploceidae, Passeridae, Viduidae, Thraupidae, Estrildidae, Artamidae, Cardinalidae, Sittidae, Prunellidae, Motacillidae, Emberizidae, Alaudidae, Cinclidae, Bombycillidae). Each species has scans from between 23 and 31 specimens with the exception of chaffinches (Fringilla coelebs), with scans from 230 specimens representing fourteen subspecies.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/T000139/1"],"identifier":"e53b2c4f-fc2e-47a9-b5b7-cc3a59f790ac","incomingCitationCount":0,"givenName":["Gavin","G.H.","Z.K.","E.C.","T.","N.","A.P."],"familyName":["Thomas","Varley","Hughes","Guillerme","Cooper","Beckerman"],"fullName":["Thomas, G.","Thomas, G.H.","Varley, Z.K.","Hughes, E.C.","Guillerme, T.","Cooper, N.","Beckerman, A.P."],"keyword":["Evolutionary ecology","Aves","passerines","chaffinch","Passeriformes","morphometrics","morphology","Fringillidae","Ploceidae","Passeridae","Viduidae","Thraupidae","Estrildidae","Artamidae","Cardinalidae","Sittidae","Prunellidae","Motacillidae","Emberizidae","Alaudidae","Cinclidae","Bombycillidae","bird"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["Aves","passerines","chaffinch","Passeriformes","morphometrics","morphology","Fringillidae","Ploceidae","Passeridae","Viduidae","Thraupidae","Estrildidae","Artamidae","Cardinalidae","Sittidae","Prunellidae","Motacillidae","Emberizidae","Alaudidae","Cinclidae","Bombycillidae","bird"],"licence":"Open government licence","lineage":"The data were generated using a MechScan Macro 3D structured white light scanner. All scans were taken at the Natural History Museum, Akeman Street, Tring. Scans were processed using FlexScan3D and output as ply format files. Linear measurement data (see metadata file) were collected using digital callipers and additional data transcribed from specimen labels.","orcid":["https://orcid.org/0000-0002-1982-6051","https://orcid.org/0009-0003-6814-7279","https://orcid.org/0000-0003-4682-6257","https://orcid.org/0000-0003-4325-1275","https://orcid.org/0000-0003-4919-8655","https://orcid.org/0000-0002-4797-9143"],"organisation":["University of Sheffield","Natural History Museum, London","Natural History Museum","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e53b2c4f-fc2e-47a9-b5b7-cc3a59f790ac","10.5285/e53b2c4f-fc2e-47a9-b5b7-cc3a59f790ac"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Sheffield","Natural History Museum"],"ror":["https://ror.org/05krs5044","https://ror.org/039zvsn29","https://ror.org/04xw4m193"],"state":"published","title":"Three-dimensional surface scans of the beaks of specimens of Chaffinches and other passerine birds ","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","jenroe"],"shortenedDescription":"The data consists of 3D surface scans of the beaks of 662 museum specimens of sixteen species (representing fifteen families of passerine birds: Fringillidae, Ploceidae, Passeridae, Viduidae, Thraupidae, Estrildidae, Artamidae, Cardinalidae, Sittidae, Prunellidae, Motacillidae,..."},{"publicationDate":"2024-07-26T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Forest Research","University of Edinburgh"],"authorGivenName":["J.","A.","R.","S.","E."],"authorFamilyName":["Baker","Perry","Cottrell","Ennos","Green","James","Cavers"],"authorFullName":["Baker, J.","Perry, A.","Cottrell, J.","Ennos, R.","Green, S.","James, E.","Cavers, S."],"authorOrcid":["https://orcid.org/0009-0003-0514-4644","https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-6355-1326","https://orcid.org/0000-0001-5401-297X","https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/03wcc3744","https://ror.org/01nrxwf90"],"catalogue":"eidc","description":"This dataset contains measurements from eleven traits on 285 plants that were grown in a randomised block designed common garden trial at the UKCEH Edinburgh. Seedlings were grown from seed during 2015-2018, and the traits were measured in December 2020. The trees are from sixteen different populations across the UK.\n\nVariables measured include: stem length, stem diameter, stem angle, main stem branches, needle length and width, extension, number of stems, number of internodes, length of internodes, and total spread.\n\nThis data was gathered as part of a project on juniper conservation genetics that also includes an analysis of the population genetics of UK junipers. The main goal of the project is to evaluate the standing genetic variation of populations using both quantitative and population genetic analyses.","documentType":"GEMINI_DOCUMENT","funder":["Scottish Forestry Trust","The Botanist Foundation","Woodland Trust","Forest Research","UK Centre for Ecology & Hydrology"],"identifier":"330cf3ac-21c3-4fa8-ab76-528f8cb2fbb8","incomingCitationCount":0,"givenName":["J.","A.","R.","S.","E."],"familyName":["Baker","Perry","Cottrell","Ennos","Green","James","Cavers"],"fullName":["Baker, J.","Perry, A.","Cottrell, J.","Ennos, R.","Green, S.","James, E.","Cavers, S."],"keyword":["Evolutionary ecology","quantitative genetics","common garden trial","trait measurements","glasshouse","juniper trees","phenotypic data","phenotypic","species trait","conservation"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["quantitative genetics","common garden trial","trait measurements","glasshouse","juniper trees","phenotypic data","phenotypic","species trait","conservation"],"licence":"Open government licence","lineage":"The plants from the 2015-2018 germination trial were potted up and placed into a randomised block design in December 2018. Trait measurements occurred in December 2020. Full descriptions of each trait and how they were measured will be available in the metadata file.\n\nBecause plants emerged over the course of about three years, they were assigned an “age class” corresponding to when they were potted up, with 1 being the oldest age class (potted first) and 5 being the youngest (potted last)\nIn the case of multi-stemmed plants, leader length was taken on up to four of the largest stems and averaged. \n\nThe internode length, leaf length and leaf width variables are the averages of three measurements each. \n\nMean spread is the average of two measurements taken perpendicularly from one another to span the area of growth as seen from above the plant. \n\nLeaf morphology data were only measured on two of the three blocks (190 of 289 plants).","orcid":["https://orcid.org/0009-0003-0514-4644","https://orcid.org/0000-0002-7889-7597","https://orcid.org/0000-0001-6355-1326","https://orcid.org/0000-0001-5401-297X","https://orcid.org/0000-0003-2139-9236"],"organisation":["UK Centre for Ecology & Hydrology","Forest Research","University of Edinburgh","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/330cf3ac-21c3-4fa8-ab76-528f8cb2fbb8","10.5285/330cf3ac-21c3-4fa8-ab76-528f8cb2fbb8"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/03wcc3744","https://ror.org/01nrxwf90","https://ror.org/04xw4m193"],"state":"published","title":"Trait data of juniper trees from 16 UK populations in a common garden glasshouse trial","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","jashun"],"shortenedDescription":"This dataset contains measurements from eleven traits on 285 plants that were grown in a randomised block designed common garden trial at the UKCEH Edinburgh. Seedlings were grown from seed during 2015-2018, and the traits were measured in December 2020. The trees are..."},{"publicationDate":"2019-01-31T00:00:00.000+00:00","authorAffiliation":["Imperial College London"],"authorGivenName":["O.","V."],"authorFamilyName":["Osborne","Savolainen"],"authorFullName":["Osborne, O.","Savolainen, V."],"authorOrcid":["https://orcid.org/0000-0002-1213-1169","https://orcid.org/0000-0001-5350-9984"],"authorRor":["https://ror.org/041kmwe10"],"catalogue":"eidc","description":"The dataset describes the effect of soil type, soil sterilisation and drought treatment on survival rate and growth of Howea belmoreana and Howea forsteriana, grown from seed in an experiment on Lord Howe Island for 30 months. The data describe the number of surviving plants per replicate, as well as height and number of leaves of individual plants at two timepoints. The work was carried out by Dr Owen Osborne and Prof. Vincent Savolainen, Imperial College London, and was funded by the NERC grant NE/M015742/1.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/M015742/1"],"identifier":"eb9f4320-3c8e-4bfe-bb58-9a6df63f3f37","incomingCitationCount":0,"givenName":["Owen","O.","V."],"familyName":["Osborne","Savolainen"],"fullName":["Osborne, O.","Savolainen, V."],"keyword":[" Lord Howe Island","Evolutionary ecology","Howea belmoreana","Howea forsteriana"],"keywordsPlace":[" Lord Howe Island"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["Howea belmoreana","Howea forsteriana"],"licence":"Open government licence","lineage":"The dataset describes the results of a long-term common garden experiment. Seeds of Howea belmoreana and Howea forsteriana were planted in 140 boxes (50 seeds per box; 7000 seeds in total) and grown outdoors under shade canopies at the Lord Howe Island Nursery, Lord Howe Island, New South Wales, Australia. Seeds were collected wild from six locations on Lord Howe Island. They were then planted in two native soil types from the island: calcareous and volcanic soil. For half of the replicates for each soil type-species combination, the soil was sterilised with an industrial soil steamer. Boxes were then sealed and left to germinate and establish. After 14 months, survival rate was recorded for each replicate box and plant height and leaf number was recorded for all surviving seedlings. At this point all seedlings were re-potted into individual pots and their order was randomised. After another 16 months, seedling survival, leaf number and height were again recorded. Half of the seedlings for each soil type-species-sterilisation treatment combination were then subjected to drought conditions for two weeks. Final survival rates were recoded two months after this. The data package contains two datasets. The first records the survival rate of each replicate (50 seed box) at each time point. The second records height, number of leaves and survival for each surviving seedling. Full materials and methods are included in the supplementary information.","locations":["POLYGON((159.03 -31.607, 159.03 -31.489, 159.119 -31.489, 159.119 -31.607, 159.03 -31.607))"],"orcid":["https://orcid.org/0000-0002-1213-1169","https://orcid.org/0000-0001-5350-9984"],"organisation":["Imperial College London","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/eb9f4320-3c8e-4bfe-bb58-9a6df63f3f37","10.5285/eb9f4320-3c8e-4bfe-bb58-9a6df63f3f37"],"resourceStatus":"Available","resourceType":"Dataset","ror":["https://ror.org/041kmwe10","https://ror.org/04xw4m193"],"state":"published","title":"Phenotypic measurements of Howea belmoreana and Howea forsteriana from a common garden experiment on Lord Howe Island","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","phtr"],"shortenedDescription":"The dataset describes the effect of soil type, soil sterilisation and drought treatment on survival rate and growth of Howea belmoreana and Howea forsteriana, grown from seed in an experiment on Lord Howe Island for 30 months. The data describe the number of surviving..."},{"publicationDate":"2013-09-30T00:00:00.000+00:00","authorAffiliation":["University of Exeter","National Marine Fisheries Service","British Antarctic Survey","Scottish Universities Environmental Research Centre"],"authorGivenName":["T.W.","E.J.","R.A.","R.A.R.","S."],"authorFamilyName":["Bodey","Ward","Phillips","McGill","Bearhop"],"authorFullName":["Bodey, T.W.","Ward, E.J.","Phillips, R.A.","McGill, R.A.R.","Bearhop, S."],"authorRor":["https://ror.org/03yghzc09","https://ror.org/033mqx355","https://ror.org/01rhff309","https://ror.org/05jfq2w07"],"catalogue":"eidc","description":"This dataset comprises the delta-13C and delta-15N stable isotopic information from two tissue samples (whole blood and mantle feathers) from 16 adults of 8 species of Southern Ocean procellariform collected at Bird Island, South Georgia during the austral summer 2001-2002. There have been numerous long-term research projects carried out at Bird Island under the auspices of the British Antarctic Survey, and this data represents one very small component that has been used to examine inter-specific competition in both the breeding and non-breeding periods.","documentType":"GEMINI_DOCUMENT","identifier":"d2c301d4-8a77-4571-9667-01168356a2d3","incomingCitationCount":0,"givenName":["Thomas W.","T.W.","E.J.","R.A.","R.A.R.","S."],"familyName":["Bodey","Ward","Phillips","McGill","Bearhop"],"fullName":["Bodey, T.W.","Ward, E.J.","Phillips, R.A.","McGill, R.A.R.","Bearhop, S."],"keyword":["Evolutionary ecology","diet","feathers","Procellariiformes","seabird","stable isotope","blood (tissue)","bird","isotope"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["diet","feathers","Procellariiformes","seabird","stable isotope","blood (tissue)","bird","isotope"],"licence":"Open government licence","lineage":"Blood samples were centrifuged within 1-3 h to separate cells and plasma, then kept frozen at -20degreesC until freeze-dried and homogenised for analysis. Lipids were not extracted from blood cells as this is considered unnecessary. Feather samples were dried, stored in sealed plastic bags, then later ground to a fine powder in a freezer mill operating at liquid N temperature prior to analysis. C and N isotope ratios were measured by continuous-flow isotope ratio mass spectrometry, using a Carlo Erba (model NA 1500) elemental analyzer (EA) linked to a Finnigan Tracer Mat and a Costech (model ECS 4010) EA combined with a Thermo Finnigan Delta Plus XP. Three internal laboratory standards were analysed for every ten unknown samples, and measurement precision of both Delta15N and Delta13C was estimated to be less than or equal to 0.2 parts per thousand. Internal standards are routinely (once a month) calibrated against International Atomic Energy Agency and National Institute of Standards and Technology stable isotope reference materials. ","locations":["POLYGON((-180 -90, -180 -60, 180 -60, 180 -90, -180 -90))"],"organisation":["University of Exeter","National Marine Fisheries Service","British Antarctic Survey","Scottish Universities Environmental Research Centre","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre","UK Centre for Ecology & Hydrology"],"recordType":"Dataset","resourceIdentifier":["1382537542770","https://catalogue.ceh.ac.uk/id/d2c301d4-8a77-4571-9667-01168356a2d3","10.5285/d2c301d4-8a77-4571-9667-01168356a2d3"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/03yghzc09","https://ror.org/033mqx355","https://ror.org/01rhff309","https://ror.org/05jfq2w07","https://ror.org/04xw4m193","https://ror.org/00pggkr55"],"state":"published","title":"Southern Ocean procellariform blood and feather stable isotope data","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","rstu"],"shortenedDescription":"This dataset comprises the delta-13C and delta-15N stable isotopic information from two tissue samples (whole blood and mantle feathers) from 16 adults of 8 species of Southern Ocean procellariform collected at Bird Island, South Georgia during the austral summer 2001-2002...."},{"publicationDate":"2014-10-10T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","The University of Edinburgh"],"authorGivenName":["W.","U.","A.","S."],"authorFamilyName":["Wachowiak","Trivedi","Telford","Cavers"],"authorFullName":["Wachowiak, W.","Trivedi, U.","Telford, A.","Cavers, S."],"authorOrcid":["https://orcid.org/0000-0003-2139-9236"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Data from whole transcriptome sequencing of the four European pine species - Pinus sylvestris (Scots pine), P. mugo (Dwarf mountain pine), P. uliginosa (Mountain pine) and P. uncinata (Peat-bog pine). Those data include\n  1) transcriptome sequence of a reference Scots pine sample generated using Illumina paired-end sequencing technology and\n  2) information about single nucleotide polymorphisms (SNPs) in 17 samples collected across the European range, compared to the reference Scots pine sample.\n\nThese genomic resources were produced to advance the study of the genetic basis of adaptive variation and speciation in pines. ","documentType":"GEMINI_DOCUMENT","identifier":"b6900166-ded6-4f7a-8734-484b6f77b2f1","incomingCitationCount":2,"givenName":["W.","U.","A.","S.","Witold"],"familyName":["Wachowiak","Trivedi","Telford","Cavers"],"fullName":["Wachowiak, W.","Trivedi, U.","Telford, A.","Cavers, S."],"keyword":["Europe","Evolutionary ecology","Pinus sylvestris","Pinus mugo","Pinus uliginosa","Pinus uncinata"],"keywordsPlace":["Europe"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["Pinus sylvestris","Pinus mugo","Pinus uliginosa","Pinus uncinata"],"licence":"Open government licence","lineage":"1. Lineage of the reference transcriptome sequence of Scots pine samples from Glen Tanar (Scotland). Total Ribonucleic acid (RNA) was extracted from needles using Spectrum (TM) Plant Total RNA Kit (Sigma). A template complementary DNA (cDNA) library was prepared using ®TruSeq RNA Sample Preparation Kit (Illumina). The cDNA library was sequenced using Illumina HiSeq 2000 platform at Edinburgh Genomics, the University of Edinburgh, Scotland (Illumina, San Diego, California). 100 base, paired-end reads were generated and assembled de novo into contigs using Trinity (version r2012-06-08). The reference transcript sequence contains 40798 contigs in total. \n\n2. The single nucleotide polymorphism (SNP) data file was prepared by aligning sixteen samples to the reference, a sample set that included P. sylvestris (four samples), P. mugo (five samples), P. uncinata (four samples) and P. uliginosa (three samples). Samples collected between 2006 and 2010.","locations":["POLYGON((-5.5 40, -5.5 61.5, 29.5 61.5, 29.5 40, -5.5 40))"],"orcid":["https://orcid.org/0000-0003-2139-9236"],"organisation":["Centre for Ecology & Hydrology","The University of Edinburgh","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["1412239567948","https://catalogue.ceh.ac.uk/id/b6900166-ded6-4f7a-8734-484b6f77b2f1","10.5285/b6900166-ded6-4f7a-8734-484b6f77b2f1"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Comparative transcriptomics of a complex of four European pine species","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","danor"],"shortenedDescription":"Data from whole transcriptome sequencing of the four European pine species - Pinus sylvestris (Scots pine), P. mugo (Dwarf mountain pine), P. uliginosa (Mountain pine) and P. uncinata (Peat-bog pine). Those data include\n  1) transcriptome sequence of a reference Scots..."},{"publicationDate":"2013-03-20T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology","Université catholique de Louvain","Oxford Brookes University"],"authorGivenName":["M.","H.","C.J."],"authorFamilyName":["Gibbs","Van Dyck","Breuker"],"authorFullName":["Gibbs, M.","Van Dyck, H.","Breuker, C.J."],"authorOrcid":["https://orcid.org/0000-0002-4091-9789"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/02495e989","https://ror.org/04v2twj65"],"catalogue":"eidc","description":"This dataset contains information on life history, wing morphological and reproductive traits of Pararge aegeria (L.). \n\nThe data was collected from an eco-evolutionary study examining how male and female Pararge aegeria from woodland and agricultural landscape populations were affected by development on drought stressed host plants. The data of life history cover total development time and sex of the studied species. The data of wing morphology include total development time, sex, wing loading, the mean of forewing melanin, the mean of forewing:aspect ratio, and the total wing area. The data of female reproductive output are mean egg size, longevity, number of days until first egg laid, fecundity, arcine square root of the percentage of eggs hatched and the percentage of eggs hatched. All the data have adult mass, population name, landscape type and treatments. \n\nFurther information can be found in Gibbs, M., Van Dyck, H., & Breuker, C. J. (2011). Development on drought-stressed host plants affects life history, flight morphology and reproductive output relative to landscape structure. Evolutionary Applications, 5(1), 66-75.  https://doi.org/10.1111/j.1752-4571.2011.00209.x","documentType":"GEMINI_DOCUMENT","identifier":"2de1edee-4871-4cd6-b600-6e610f5a5ece","incomingCitationCount":0,"givenName":["Melanie","M.","H.","C.J."],"familyName":["Gibbs","Van Dyck","Breuker"],"fullName":["Gibbs, M.","Van Dyck, H.","Breuker, C.J."],"keyword":["Evolutionary ecology","Pararge aegeria"],"keywordsTheme":["Evolutionary ecology"],"keywordsOther":["Pararge aegeria"],"licence":"Non-Open government licence","lineage":"To create host plants for Pararge aegeria larval rearing, potted plants of the grass species Poa trivialis were grown under standard conditions. Plants were randomly assigned to one of two treatment groups: control or drought-stressed and watered according to protocol. Newly hatched P. aegeria larvae were randomly selected and collected from four different outbred laboratory stock populations that originated from two different landscape types in Belgium: two populations from a deciduous woodland landscape and two populations from an agricultural landscape. The larvae were placed on either control or drought-stressed potted P. trivialis plants and reared in a climate room in common garden conditions until emergence as an adult. The rearing pots were spatially randomized with respect to population of origin and host plant treatment group. To determine how growth on drought stressed host plants differentially affects woodland and agricultural landscape larval development and survival the following data were recorded: total development time (days) and mean egg to adult survival per population. To measure fecundity and egg hatching success, on the day of emergence adult female P. aegeria from each of the host plant treatment groups (control vs. drought stressed) were randomly chosen and placed individually in netted cages along with a potted P. trivialis for oviposition and a male for mating. Fifty females of woodland landscape of origin and 50 of agricultural landscape of origin were set up. To determine whether development on drought stressed host plants differentially affects resource allocation to reproduction in females from woodland versus agricultural landscapes the following data were collected: total number of eggs laid by a female during life, mean lifetime egg size (mm2), and lifespan (days). To determine how growth on drought stressed host plants differentially influences resource allocation to flight morphological traits in both male and female P. aegeria from woodland versus agricultural landscapes, digital images were taken of the dorsal wing surface under carefully controlled light conditions. Using these digital pictures, forewing surface area (mm2), hindwing surface area (mm2), forewing length (mm) and forewing melanization, were measured using the image analysing software Image J 1.38x. Wing loading was calculated as total body weight / total wing area. Mean forewing length and mean forewing surface area were determined for each individual, and these measures were used to calculate forewing aspect ratio: forewing length2/forewing area. For each trait measured, damaged wings were excluded from analyses. Based on repeat measurements of a random subset of 30 individuals, the amount of measurement error because of imaging and digitizing was negligible. Full methods can be found in the manuscript: Gibbs M, Van Dyck H & Breuker CJ. (2012) Development on drought stressed host plants affects life history, flight morphology and reproductive output relative to landscape structure. Evolutionary Applications, volume 5(1), 66-75.","orcid":["https://orcid.org/0000-0002-4091-9789"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","Université catholique de Louvain","Oxford Brookes University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["1317635339015","10.5285/2de1edee-4871-4cd6-b600-6e610f5a5ece","https://catalogue.ceh.ac.uk/id/2de1edee-4871-4cd6-b600-6e610f5a5ece"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","ror":["https://ror.org/00pggkr55","https://ror.org/02495e989","https://ror.org/04v2twj65","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Gibbs, M., Van Dyck, H., & Breuker, C. J. (2011). Development on drought-stressed host plants affects life history, flight morphology and reproductive output relative to landscape structure. Evolutionary Applications, 5(1), 66-75. "],"title":"Life history, wing morphology and reproductive output of Pararge aegeria L. on drought stressed host plants","topic":["0/Evolutionary ecology/"],"version":1.0,"view":["public","weig"],"shortenedDescription":"This dataset contains information on life history, wing morphological and reproductive traits of Pararge aegeria (L.). \n\nThe data was collected from an eco-evolutionary study examining how male and female Pararge aegeria from woodland and agricultural landscape populations..."},{"publicationDate":"2024-08-23T00:00:00.000+00:00","authorAffiliation":["University of Liverpool","The Australian National University","Aarhus University","Netherlands Institute of Ecology","University of Leeds","University of Zurich","University of St Andrews","University of East Anglia","Universidade de Lisboa","Martin-Luther University Halle-Wittenberg","University of Bristol","University of Münster","Vrije Universiteit Amsterdam","University of Padova","University of Lincoln","Université de Rennes","The University of New South Wales","Stockholm University"],"authorGivenName":["F.","D. 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To identify studies, we performed a systematic literature search using the online database Web of Science in August 2021 (see Dougherty et al. (2024) for details). From this search, 781 studies were screened, and 339 studies met our inclusion criteria. These studies all experimentally manipulate temperature in a laboratory setting, usually for more than five days. The studies tested 308 species in total, all of which are invertebrates, mostly from the order Insecta (77%) or Arachnida (15%). \n\nFrom these studies we extracted reported data for the average reproductive output and adult lifespan (plus associated variances and sample sizes) for each tested temperature treatment. Means and variances were then converted into standardised effect sizes for further meta-analysis. We used the standardised mean difference (SMD) in reproduction or adult lifespan between pairwise temperature treatments as the effect size (response variable). SMDs were calculated in a pairwise fashion in relation to a single ‘reference’ treatment. The reference treatment was assigned as: a) the treatment closest to the rearing temperature of the study population, or b) the treatment with a temperature closest to 25℃ (in the absence of a reported rearing temperature).\n\nFor each effect size, we also report information relating to the focal species (e.g. taxonomic group, focal sex, habitat, fertilisation mode) and relevant methodological details (e.g. experimental temperature, exposure duration, which life stage was exposed).\n\nThe dataset consists of all data needed to repeat the meta-analyses: two csv files containing extracted effect size data, and two phylogenetic trees showing the relationships between the species included in the analysis.\n\nThis work was funded by the Natural Environment Research Council (NE/X011550/1 & NE/P002692/1), the Biotechnology and Biological Sciences Research Council (BB/W016753/1), the Australian Research Council (Future Fellowship FT220100276), the German Research Foundation (DFG, Heisenberg fellowship FR 2973/11-1), and the European Society for Evolutionary Biology.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council","Australian Research Council","German Research Foundation","European Society for Evolutionary Biology"],"grant":["NE/P002692/1","NE/X011550/1","BB/W016753/1","FT220100276","FR 2973/11-1"],"identifier":"59abe798-1b39-4555-b3a6-8c301a61bcaa","incomingCitationCount":1,"givenName":["F.","D. 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R."],"familyName":["Frost","Noble","Schou","Rowe","Rees","Lüpold","Chatten","Smithson","Cole","Simões","Lindenbaum","Koppik","Weaving","Canal Domenech","Churchill","Zizzari","Ellers","Gigliotti","Graziano","Iossa","De Nardo","Pilakouta","Meena","Ramm","Nakagawa","Bretman","Fricke","Snook","Price","Dougherty"],"fullName":["Frost, F.","Noble, D.W.A.","Schou, M.F.","Rowe, M.","Rees, J.","Lüpold, S.","Chatten, A.","Smithson, C.H.","Cole, B.J.","Simões, P.","Lindenbaum, I.","Koppik, M.","Weaving, H.","Canal Domenech, B.","Churchill, E.","Zizzari, Z.V.","Ellers, J.","Gigliotti, S.","Graziano, M.","Iossa, G.","De Nardo, A.N.","Pilakouta, N.","Meena, A.","Ramm, S.A.","Nakagawa, S.","Bretman, A.","Fricke, F.","Snook, R.R.","Price, T.A.R.","Dougherty, L.R."],"keyword":["Phenology","Biodiversity","Evolutionary ecology","Animal behaviour","Climate and climate change","meta-analysis","animal reproduction","temperature","heat stress","cold stress","climate change impact","egg","animal population"],"keywordsTheme":["Phenology","Biodiversity","Evolutionary ecology","Animal behaviour","Climate and climate change"],"keywordsOther":["meta-analysis","animal reproduction","temperature","heat stress","cold stress","climate change impact","egg","animal population"],"licence":"Open government licence","lineage":"The project used a sample of papers collected following a systematic literature search by Dougherty et al. (2024). We searched this database for any studies which reported temperature effects on both reproduction and longevity/survival of the same species. We then extracted all relevant effect size data from these papers. Altogether, we extracted data from 339 studies and for 308 invertebrate species.","orcid":["https://orcid.org/0000-0003-2382-2990","https://orcid.org/0000-0001-9460-8743","https://orcid.org/0000-0001-5521-5269","https://orcid.org/0000-0001-9747-041X","https://orcid.org/0009-0008-0212-2446","https://orcid.org/0000-0002-5069-1992","https://orcid.org/0009-0003-5378-0661","https://orcid.org/0000-0002-0032-8124","https://orcid.org/0000-0002-2747-2580","https://orcid.org/0000-0002-4253-1200","https://orcid.org/0000-0002-3433-7248","https://orcid.org/0000-0002-9093-0556","https://orcid.org/0000-0003-1447-5704","https://orcid.org/0000-0003-0910-8600","https://orcid.org/0000-0002-9945-3071","https://orcid.org/0000-0003-2665-1971","https://orcid.org/0009-0004-4726-8204","https://orcid.org/0000-0001-8850-9036","https://orcid.org/0000-0001-6813-4361","https://orcid.org/0000-0003-3708-1492","https://orcid.org/0000-0001-8503-520X","https://orcid.org/0000-0001-9731-3924","https://orcid.org/0000-0001-7786-7364","https://orcid.org/0000-0002-7765-5182","https://orcid.org/0000-0002-4421-3337","https://orcid.org/0000-0002-0691-6779","https://orcid.org/0000-0003-1852-1448","https://orcid.org/0000-0002-4394-6301","https://orcid.org/0000-0003-1406-0680"],"organisation":["University of Liverpool","The Australian National University","Aarhus University","Netherlands Institute of Ecology","University of Leeds","University of Zurich","University of St Andrews","University of East Anglia","Universidade de Lisboa","Martin-Luther University Halle-Wittenberg","University of Bristol","University of Münster","Vrije Universiteit Amsterdam","University of Padova","University of Lincoln","Université de Rennes","The University of New South Wales","Stockholm University","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/59abe798-1b39-4555-b3a6-8c301a61bcaa","10.5285/59abe798-1b39-4555-b3a6-8c301a61bcaa"],"resourceStatus":"Available","resourceType":"Non-geographic dataset","rightsHolder":["University of Liverpool"],"ror":["https://ror.org/04xs57h96","https://ror.org/019wvm592","https://ror.org/01aj84f44","https://ror.org/01g25jp36","https://ror.org/024mrxd33","https://ror.org/02crff812","https://ror.org/02wn5qz54","https://ror.org/026k5mg93","https://ror.org/01c27hj86","https://ror.org/05gqaka33","https://ror.org/0524sp257","https://ror.org/00pd74e08","https://ror.org/008xxew50","https://ror.org/03yeq9x20","https://ror.org/015m7wh34","https://ror.org/03r8z3t63","https://ror.org/05f0yaq80","https://ror.org/04xw4m193"],"state":"published","title":"Reproductive output and adult lifespan of 308 invertebrate species subjected to temperature variations, from a meta-analysis of published literature","topic":["0/Phenology/","0/Biodiversity/","0/Evolutionary ecology/","0/Animal behaviour/","0/Climate and climate change/"],"version":1.0,"view":["public","rafbar"],"shortenedDescription":"This dataset contains extracted data from studies reporting the effect of temperature on animal reproduction and adult lifespan. 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