{"numFound":50,"page":1,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?facet=topic%7C0%2FEnvironmental+survey%2F&facet=funder%7CEnvironment+Agency&facet=funder%7CNatural+Environment+Research+Council&facet=resourceStatus%7CAvailable&facet=recordType%7CDataset&facet=rightsHolder%7CUK+Centre+for+Ecology+%26+Hydrology","nextPage":"http://catalogue.ceh.ac.uk/eidc/documents?page=2&facet=topic%7C0%2FEnvironmental+survey%2F&facet=funder%7CEnvironment+Agency&facet=funder%7CNatural+Environment+Research+Council&facet=resourceStatus%7CAvailable&facet=recordType%7CDataset&facet=rightsHolder%7CUK+Centre+for+Ecology+%26+Hydrology","results":[{"publicationDate":"2022-05-04T00:00:00.000+00:00","authorAffiliation":["Botanical Society of Britain and Ireland","UK Centre for Ecology & Hydrology"],"authorGivenName":["K.J.","Oliver L."],"authorFamilyName":["Walker","Pescott"],"authorFullName":["Walker, K.J.","Pescott, O.L."],"authorOrcid":["https://orcid.org/0000-0002-0685-8046"],"authorRor":["https://ror.org/02krbn758","https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Dataset contains lists of plant indicator species extracted from the JNCC Common Standards habitat monitoring guidance for the UK. The Common Standards Monitoring (CSM) approach was developed in order to standardise the monitoring of designated nature conservation sites. As well as extracting (and sometimes interpreting) the plant species noted in the CSM guidance documents, we provide links to CSM habitats, National Vegetation Classification communities, National Plant Monitoring Scheme (https://www.npms.org.uk) indicator species, and provide current taxonomic names in a lookup table.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"2c433c5b-8d15-49a7-aae7-b1f027d17e0e","incomingCitationCount":0,"givenName":["K.J.","Oliver L."],"familyName":["Walker","Pescott"],"fullName":["Walker, K.J.","Pescott, O.L."],"keyword":["Environmental survey","Biodiversity","Protected sites monitoring","Plants","Condition","surveillance","habitat"],"keywordsTheme":["Environmental survey","Biodiversity"],"keywordsOther":["Protected sites monitoring","Plants","Condition","surveillance","habitat"],"licence":"Open government licence","lineage":"Data were extracted from existing JNCC documentation by Kevin Walker. These were subjected to checks from habitat experts during the developing of the National Plant Monitoring Scheme (see e.g. Pescott et al. 2019; https://doi.org/10.1371/journal.pone.0215891). Species names were validated through automated look-ups to the BSBI database, following by manual checking, the results of which are included in this deposit.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-0685-8046"],"organisation":["Botanical Society of Britain and Ireland","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/2c433c5b-8d15-49a7-aae7-b1f027d17e0e","10.5285/2c433c5b-8d15-49a7-aae7-b1f027d17e0e"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/02krbn758","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["National Plant Monitoring Scheme","Pescott OL, Walker KJ, Harris F, New H, Cheffings CM, Newton N, et al. (2019) The design, launch and assessment of a new volunteer-based plant monitoring scheme for the United Kingdom. PLoS ONE 14(4): e0215891."],"title":"Plant indicator species for JNCC Common Standards habitat monitoring, UK","topic":["0/Environmental survey/","0/Biodiversity/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"Dataset contains lists of plant indicator species extracted from the JNCC Common Standards habitat monitoring guidance for the UK. The Common Standards Monitoring (CSM) approach was developed in order to standardise the monitoring of designated nature conservation sites...."},{"publicationDate":"2025-06-24T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["S.","V.","A.","L.","E.S.","J.R.","D.B.","M.","M.A.","H.M.","N.J.","J.G.","P.","D.","H.","T.","G.","Y.","W.D.","R.","G.V.","F.","P.M.","R.J.","O.","J.L.","E.J.","H.C.","A.C.","J.B."],"authorFamilyName":["Stanley","Antoniou","Askquith-Ellis","Ball","Bennett","Blake","Boorman","Brookes","Clarke","Cooper","Cowan","Cumming","Evans","Farrand","Fry","Harvey","Houghton-Carr","Howson","Jiménez-Arranz","Keen","Khamis","Leeson","Lord","Morrison","Nash","O'Callaghan","Retter","Rylett","Scarlett","Smith","St Quintin","Swain","Szczykulska","Teagle","Thornton","Trill","Vincent","Ward","Warwick","Winterbourn"],"authorFullName":["Stanley, S.","Antoniou, V.","Askquith-Ellis, A.","Ball, L.","Bennett, E.S.","Blake, J.R.","Boorman, D.B.","Brookes, M.","Clarke, M.A.","Cooper, H.M.","Cowan, N.J.","Cumming, A.","Evans, J.G.","Farrand, P.","Fry, M.","Harvey, D.","Houghton-Carr, H.","Howson, T.","Jiménez-Arranz, G.","Keen, Y.","Khamis, D.","Leeson, S.","Lord, W.D.","Morrison, R.","Nash, G.V.","O'Callaghan, F.","Retter, A.","Rylett, D.","Scarlett, P.M.","Smith, R.J.","St Quintin, P.","Swain, O.","Szczykulska, M.","Teagle, S.","Thornton, J.L.","Trill, E.J.","Vincent, P.","Ward, H.C.","Warwick, A.C.","Winterbourn, J.B."],"authorOrcid":["https://orcid.org/0000-0002-8303-2969","https://orcid.org/0000-0001-6011-4075","https://orcid.org/0000-0002-0203-5958","https://orcid.org/0000-0001-7398-9268","https://orcid.org/0000-0002-1033-4712","https://orcid.org/0000-0002-6436-5266","https://orcid.org/0000-0002-7439-0393","https://orcid.org/0000-0002-1382-3407","https://orcid.org/0000-0002-7473-7916","https://orcid.org/0000-0001-5704-9006","https://orcid.org/0000-0003-4194-1416","https://orcid.org/0000-0003-1142-4039","https://orcid.org/0009-0003-9102-5413","https://orcid.org/0000-0003-4465-2169","https://orcid.org/0000-0002-9822-316X","https://orcid.org/0009-0004-4445-8272","https://orcid.org/0000-0003-2987-488X","https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0003-1611-2042","https://orcid.org/0000-0002-7426-1153","https://orcid.org/0000-0002-6447-6740","https://orcid.org/0000-0002-5820-7093","https;//orcid.org/0000-0002-8824-8435","https://orcid.org/0000-0002-8350-4823","https://orcid.org/0000-0002-6233-8942","https://orcid.org/0000-0001-8881-185X","https://orcid.org/0000-0002-1318-5281"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains daily and sub-daily hydrometeorological and soil moisture observations from the COSMOS-UK (cosmic-ray soil moisture) monitoring network from October 2013 to the end of 2024 . These data are from 51 sites across the UK recording a range of hydrometeorological and soil variables.\n\nEach site in the network records the following hydrometeorological and soil data at 30-minute resolution: Radiation (short wave, long wave, and net), precipitation, atmospheric pressure, air temperature, wind speed and direction, humidity, soil heat flux, and soil temperature and volumetric water content (VWC), measured by point sensors at various depths.\n\nEach site hosts a cosmic-ray sensing probe; a novel sensor technology which counts fast neutrons in the surrounding atmosphere. In combination with the recorded hydrometeorological data, neutron counts are used to derive VWC over a field scale (COSMOS VWC), provide at daily resolution.\n\nThe presence of snow leads to erroneously high measurements of COSMOS VWC due to all the extra water in the surrounding area. Included in the daily data are indications of snow days, on which, the COSMOS VWC are adjusted, and the snow water equivalent (SWE) is given.\n\nThe potential evapotranspiration (PE), derived from recorded hydrometeorological and soil are also included at daily resolution.\n\nTwo levels of quality control are carried out, firstly data is run through a series of automated checks, such as range tests and spike tests, and then all data is manually inspected each week  where any other faults are picked up, including sensor faults or connection issues. Quality control flags are provided for all recorded (30 minute) data , indicating the reason for any missing data.\n\nThis  work was supported by the Natural Environment Research Council award number NE/Y006208/1 as part of the UKCEH NC-UK programme delivering National Capability.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/Y006208/1"],"identifier":"2dce161d-2fab-47bb-9fe6-38e7ed1ae18a","incomingCitationCount":0,"givenName":["R.J.","S.","V.","A.","L.","E.S.","J.R.","D.B.","M.","M.A.","H.M.","N.J.","J.G.","P.","D.","H.","T.","G.","Y.","W.D.","R.","G.V.","F.","P.M.","O.","J.L.","E.J.","H.C.","A.C.","J.B."],"familyName":["Smith","Stanley","Antoniou","Askquith-Ellis","Ball","Bennett","Blake","Boorman","Brookes","Clarke","Cooper","Cowan","Cumming","Evans","Farrand","Fry","Harvey","Houghton-Carr","Howson","Jiménez-Arranz","Keen","Khamis","Leeson","Lord","Morrison","Nash","O'Callaghan","Retter","Rylett","Scarlett","St Quintin","Swain","Szczykulska","Teagle","Thornton","Trill","Vincent","Ward","Warwick","Winterbourn"],"fullName":["Richard Smith","Stanley, S.","Antoniou, V.","Askquith-Ellis, A.","Ball, L.","Bennett, E.S.","Blake, J.R.","Boorman, D.B.","Brookes, M.","Clarke, M.A.","Cooper, H.M.","Cowan, N.J.","Cumming, A.","Evans, J.G.","Farrand, P.","Fry, M.","Harvey, D.","Houghton-Carr, H.","Howson, T.","Jiménez-Arranz, G.","Keen, Y.","Khamis, D.","Leeson, S.","Lord, W.D.","Morrison, R.","Nash, G.V.","O'Callaghan, F.","Retter, A.","Rylett, D.","Scarlett, P.M.","Smith, R.J.","St Quintin, P.","Swain, O.","Szczykulska, M.","Teagle, S.","Thornton, J.L.","Trill, E.J.","Vincent, P.","Ward, H.C.","Warwick, A.C.","Winterbourn, J.B."],"keyword":["COSMOS-UK","Agriculture","Climate and climate change","Ecosystem services","Environmental survey","Hydrology","Land use","Soil","Absolute humidity","Atmospheric pressure","Cosmic-Ray sensing probe","Longwave radiation","Shortwave radiation","Net radiation","Potential evapotranspiration","Rainfall","Relative humidity","Soil heat flux","Soil humidity","Soil temperature","Soil water content","Soil wetness","Soil depth 2cm","Soil depth 5cm","Soil depth 10cm","Soil depth 20cm","Soil depth 50cm","UK","Volumetric water content","VWC","Wind direction","Wind speed","Latent heat","Sensible heat","atmospheric humidity","air temperature","soil","soil moisture","atmospheric precipitation","evapotranspiration"],"keywordsProject":["COSMOS-UK"],"keywordsTheme":["Agriculture","Climate and climate change","Ecosystem services","Environmental survey","Hydrology","Land use","Soil"],"keywordsOther":["Absolute humidity","Atmospheric pressure","Cosmic-Ray sensing probe","Longwave radiation","Shortwave radiation","Net radiation","Potential evapotranspiration","Rainfall","Relative humidity","Soil heat flux","Soil humidity","Soil temperature","Soil water content","Soil wetness","Soil depth 2cm","Soil depth 5cm","Soil depth 10cm","Soil depth 20cm","Soil depth 50cm","UK","Volumetric water content","VWC","Wind direction","Wind speed","Latent heat","Sensible heat","atmospheric humidity","air temperature","soil","soil moisture","atmospheric precipitation","evapotranspiration"],"observedPropertyValue":["DATE_TIME","LWIN","LWOUT","SWIN","SWOUT","RN","PRECIP","PRECIP_TIPPING","PRECIP_RAINE","PA","TA","WS","WD","Q","RH","SNOW_DEPTH","UX","UY","UZ","G1","G2","TDT1_TSOIL","TDT2_TSOIL","TDT1_VWC","TDT2_VWC","TDT3_TSOIL","TDT4_TSOIL","TDT3_VWC","TDT4_VWC","TDT5_TSOIL","TDT6_TSOIL","TDT5_VWC","TDT6_VWC","TDT7_TSOIL","TDT8_TSOIL","TDT7_VWC","TDT8_VWC","TDT9_TSOIL","TDT10_TSOIL","TDT9_VWC","TDT10_VWC","STP_TSOIL2","STP_TSOIL5","STP_TSOIL10","STP_TSOIL20","STP_TSOIL50"],"observedPropertyTitle":["DateTime","Incoming longwave radiation","Mean incoming longwave radiation","Mean outgoing longwave radiation","Mean incoming shortwave radiation","Mean outgoing shortwave radiation","Mean Net radiation","Total precipitation from Pluvio","Total precipitation from tipping bucket","Total precipitation from rain[e]","Mean atmospheric pressure","Mean air temperature","Mean wind speed","Mean wind direction","Maen absolute humidity","mean relative humidity","Snow depth","Mean X component of wind speed","Mean Y component of wind speed","Mean Z component of wind speed","Mean heat flux 1","Mean heat flux 2","Soil temperature from TDT sensor 2 at 10 cm","Soil temperature from TDT sensor 1 at 10 cm","Volumetric water content from TDT sensor 1 at 10 cm","Volumetric water content from TDT sensor 2 at 10 cm","Soil temperature from TDT sensor 4 at 5 cm","Soil temperature from TDT sensor 3 at 5 cm","Volumetric water content from TDT sensor 3 at 5 cm","Volumetric water content from TDT sensor 4 at 5 cm","Soil temperature from TDT sensor 5 at 15 cm","Soil temperature from TDT sensor 6 at 15 cm","Volumetric water content from TDT sensor 5 at 15 cm","Volumetric water content from TDT sensor 6 at 15 cm","Soil temperature from TDT sensor 7 at 25 cm","Soil temperature from TDT sensor 8 at 25 cm","Volumetric water content from TDT sensor 7 at 25 cm","Volumetric water content from TDT sensor 8 at 25 cm","Soil temperature from TDT sensor 9 at 50 cm","Soil temperature from TDT sensor 10 at 50 cm","Volumetric water content from TDT sensor 9 at 50 cm","Volumetric water content from TDT sensor 10 at 50 cm","Mean soil temperature at depth 2 cm","Mean soil temperature at depth 5 cm","Mean soil temperature at depth 10 cm","Mean soil temperature at depth 20 cm","Mean soil temperature at depth 50 cm"],"licence":"Open government licence","lineage":"Hydrometeorological and soil observations are recorded at sites around the UK using an array of sensors. Every hour, the raw data collected is sent to UKCEH in Wallingford, where it is subject to quality control. Soil volumetric water content data are derived from 30-minute hydrometeorological data and data from the cosmic-ray sensing probe by Python scripts run every hour. The data are calculated using the method outlined in Evans et al. 2016. Snow water equivalents are derived by Python scripts at the end of the day from the hydrometeorological data according to Wallbank et al., 2020. Potential evapotranspiration data are derived by Python scripts at the end of the day from the hydrometeorological data according to the Penman-Monteith method, (FAO Crop evapotranspiration - Guidelines for computing crop water requirements - FAO Irrigation and drainage paper 56). All data (including raw, quality controlled and derived) is saved in an Oracle database.\n","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0002-6447-6740","https://orcid.org/0000-0002-8303-2969","https://orcid.org/0000-0001-6011-4075","https://orcid.org/0000-0002-0203-5958","https://orcid.org/0000-0001-7398-9268","https://orcid.org/0000-0002-1033-4712","https://orcid.org/0000-0002-6436-5266","https://orcid.org/0000-0002-7439-0393","https://orcid.org/0000-0002-1382-3407","https://orcid.org/0000-0002-7473-7916","https://orcid.org/0000-0001-5704-9006","https://orcid.org/0000-0003-4194-1416","https://orcid.org/0000-0003-1142-4039","https://orcid.org/0009-0003-9102-5413","https://orcid.org/0000-0003-4465-2169","https://orcid.org/0000-0002-9822-316X","https://orcid.org/0009-0004-4445-8272","https://orcid.org/0000-0003-2987-488X","https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0003-1611-2042","https://orcid.org/0000-0002-7426-1153","https://orcid.org/0000-0002-5820-7093","https;//orcid.org/0000-0002-8824-8435","https://orcid.org/0000-0002-8350-4823","https://orcid.org/0000-0002-6233-8942","https://orcid.org/0000-0001-8881-185X","https://orcid.org/0000-0002-1318-5281"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/2dce161d-2fab-47bb-9fe6-38e7ed1ae18a","10.5285/2dce161d-2fab-47bb-9fe6-38e7ed1ae18a"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Daily and sub-daily hydrometeorological and soil moisture data (2013-2024) [COSMOS-UK]","topic":["0/Agriculture/","0/Climate and climate change/","0/Ecosystem services/","0/Environmental survey/","0/Hydrology/","0/Land use/","0/Soil/"],"version":1.0,"view":["public","katwri"],"shortenedDescription":"This dataset contains daily and sub-daily hydrometeorological and soil moisture observations from the COSMOS-UK (cosmic-ray soil moisture) monitoring network from October 2013 to the end of 2024 . These data are from 51 sites across the UK recording a range of hydrometeorological..."},{"publicationDate":"2020-05-07T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Institute of Environmental Assessment and Water Research"],"authorGivenName":["C.L.","C.","M. ","N.A.","L.A."],"authorFamilyName":["Barnett","Wells","Izquierdo","Beresford","Walker"],"authorFullName":["Barnett, C.L.","Wells, C.","Izquierdo, M.","Beresford, N.A.","Walker, L.A."],"authorOrcid":["https://orcid.org/0000-0002-8722-0238"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Data comprise stable element concentrations for a range of elements, radionuclide activity concentrations for the isotopes K-40 and Cs-137 and radionuclide and stable element concentration ratios.\n\nSamples of soil, water, vegetation (grasses, trees, herbaceous plants and shrubs), fungi, earthworms, bees, wood mice, bank voles, common frogs, frogspawn and European toads were collected between March 2015 and October 2016 from two forests in north-east England. The study was conducted to target representative terrestrial species of the ICRPs Reference Animals and Plants.\n\nFunding for this work was via the TREE project funded by NERC, the Environment Agency and Radioactive Waste Management Ltd. under the RATE programme.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Environment Agency","Radioactive Waste Management Ltd"],"grant":["NE/L000318/1"],"identifier":"8f85c188-a915-46ac-966a-95fcb1491be6","incomingCitationCount":1,"givenName":["Cath","C.L.","C.","M. ","N.A.","L.A."],"familyName":["Barnett","Wells","Izquierdo","Beresford","Walker"],"fullName":["Barnett, C.","Barnett, C.L.","Wells, C.","Izquierdo, M.","Beresford, N.A.","Walker, L.A."],"keyword":["TREE","Radioecology","Environmental risk","Environmental survey","radionuclide","caesium"],"keywordsProject":["TREE"],"keywordsTheme":["Radioecology","Environmental risk","Environmental survey"],"keywordsOther":["radionuclide","caesium"],"licence":"Open government licence","lineage":"Data consist of stable element and radionuclide concentrations, and estimated concentration ratios for biota, soil and water collected from two forests in north-east England (March 2015 to October 2016). Samples were analysed by ICP-MS and, where sample size was sufficient, gamma analysis.\n\nSoil: pH and loss on ignition were determined.\n\nWater: Samples were filtered through Whatman 541 filter paper. \n\nWood mice: Trapping was conducted using \"Longworth\" traps. Randomly selected individuals were dissected and a beetle (Dermestes maculatus) colony was used to clean the bones of soft tissue. \n\nBank voles: Trapping was conducted as for Wood mice. Vole samples were ashed. \n\nBee species: Pan traps were placed on the ground. Bees collected were bulked by species and homogenised in an agate mortar. \n\nEarthworms: Worms were collected by digging to circa 30 cm, they were rinsed in de-ionised water and placed on damp tissue paper to allow gut evacuation. Samples were bulked by species and homogenised by agate mortar. \n\nCommon frogs and spawn: Frogs were collected by hand during darkness. Randomly selected individuals were dissected and a beetle colony used to clean bones. Spawn samples were washed in de-ionised water and freeze-dried prior to homogenisation in an agate mortar. \n\nEuropean toads: Toads were collected as for frogs. Randomly selected individuals had their gastrointestinal tract removed, the remaining carcass was washed in de-ionised water and then ashed. \n\nRoe deer: Deer were obtained via the Forestry Commission. Animals were dissected and all bone/carcass samples were cleaned by placing in a beetle colony. Tissue samples were freeze dried and homogenised using an agate mill or mortar. \n\nPine Trees: Samples were collected of small branches, needles and heartwood core (sampled using an increment borer). Samples were air dried (~20oC) and the needles and branches subsequently finely ground using an agate mill or mortar (dependent upon size); the core samples were reduced manually to ~5mm in diameter. \n\nWild grasses: Samples of both leaf and flowering stems were collected. They were air dried and finely ground (using an agate mill or mortar dependent upon sample size). \nHerbaceous plants and shrubs: Opportunistic samples were collected from a variety of species abundant at the main sampling sites and from areas where the roe deer were obtained.  Samples were air dried and finely ground (using an agate mill or mortar). \n\nFungi: Opportunistic samples of fungal fruiting bodies were collected mainly from areas where the roe deer were obtained. Samples were identified by species, oven dried (~60oC) and subsequently finely ground (~2mm) using either an agate mortar or \"coffee\" grinder depending upon sample size. Species were bulked by sampling location and, were possible, by feeding strategy. \n\nICP-MS analysis was conducted using a Thermo-Fisher Scientific iCAP-Q. Samples subjected to ashing pre-treatment had undissolved black particles in the solutions which suggests digestion was incomplete. Similarly, TMAH digestion is not able to fully digest plant material therefore variable degrees of dissolution were observed; pine tree core samples showed poor dissolution rates and therefore the iodine concentrations reported may be underestimated. Digestion of replicates, reference materials and blanks were undertaken to check accuracy and precision. Detection limits were calculated as three times the standard deviation of the reagent blanks. \n\nGamma analysis was conducted using hyper-pure germanium detectors calibrated for efficiency using a certified reference solution (National Physics Laboratory R08-04). Spectra were analysed using Canberra Apex software and activity concentrations decay corrected to the day of sampling. Replicate analyses were conducted on random samples and process blanks for quality assurance purposes. ","locations":["POLYGON((-2.892 53.197, -2.892 55.44, 1.197 55.44, 1.197 53.197, -2.892 53.197))"],"orcid":["https://orcid.org/0000-0002-8722-0238"],"organisation":["UK Centre for Ecology & Hydrology","Institute of Environmental Assessment and Water Research","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/8f85c188-a915-46ac-966a-95fcb1491be6","10.5285/8f85c188-a915-46ac-966a-95fcb1491be6"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["Transfer parameters for ICRP reference animals and plants collected from a forest ecosystem. Barnett, C.L.; Beresford, N.A.; Walker, L.A.; Baxter, M.; Wells, C.; Copplestone, D. (2014). Radiation and Environment Biophysics, 53, 125-149. "],"title":"Element and radionuclide concentrations in wildlife (including representative species of the ICRP's Reference Animals and Plants) and associated soils from forests in north-east England, 2015-2016","topic":["0/Radioecology/","0/Environmental risk/","0/Environmental survey/"],"version":1.0,"view":["public","jgar"],"shortenedDescription":"Data comprise stable element concentrations for a range of elements, radionuclide activity concentrations for the isotopes K-40 and Cs-137 and radionuclide and stable element concentration ratios.\n\nSamples of soil, water, vegetation (grasses, trees, herbaceous plants..."},{"publicationDate":"2024-10-28T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["H.","H.T.","M.A.","M.M.","B.A.","J.B.","P.O.","G.","S.J.","S.C."],"authorFamilyName":["Feuchtmayr","Carter","Clarke","De Ville","Dodd","James","Keenan","Rhodes","Thackeray","Maberly"],"authorFullName":["Feuchtmayr, H.","Carter, H.T.","Clarke, M.A.","De Ville, M.M.","Dodd, B.A.","James, J.B.","Keenan, P.O.","Rhodes, G.","Thackeray, S.J.","Maberly, S.C."],"authorOrcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0002-3808-1534"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at the North Basin of Windermere in Cumbria, England that began in 1945 for some variables. The data have been collected by the UK Centre for Ecology & Hydrology (UKCEH). The data available to download comprise surface temperature (TEMP) in degree Celsius, surface oxygen saturation (OXYG) in % air-saturation, Secchi depth (SECC) in metres, alkalinity (ALKA) in µg per litre as CaCO3 and pH. Ammonium (NH4N), nitrate (NO3N), soluble reactive phosphate (PO4P), total phosphorus (TOTP), dissolved reactive silicon expressed as SiO2 (SIO2) and phytoplankton chlorophyll a (TOCA) are all given in µg per litre. Water samples are based on a sample integrated from 0 to 7m. All data are from January 2019 until the end of 2020.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1","NE/Y006208/1"],"identifier":"24a87e14-3ab4-4c27-be10-e499ad80804a","incomingCitationCount":0,"givenName":["H.","H.T.","M.A.","M.M.","B.A.","J.B.","P.O.","G.","S.J.","S.C."],"familyName":["Feuchtmayr","Carter","Clarke","De Ville","Dodd","James","Keenan","Rhodes","Thackeray","Maberly"],"fullName":["Feuchtmayr, H.","Carter, H.T.","Clarke, M.A.","De Ville, M.M.","Dodd, B.A.","James, J.B.","Keenan, P.O.","Rhodes, G.","Thackeray, S.J.","Maberly, S.C."],"keyword":["Lake District","Environmental survey","Water quality","Lake monitoring","lake water temperature","dissolved oxygen","secchi depth","algae","phytoplankton","lake water chemistry"],"keywordsPlace":["Lake District"],"keywordsTheme":["Environmental survey","Water quality"],"keywordsOther":["Lake monitoring","lake water temperature","dissolved oxygen","secchi depth","algae","phytoplankton","lake water chemistry"],"licence":"Open government licence","lineage":"Measurements are made from a boat at a marked location (buoy) at the deepest part of the lake. \nPlease note that the data presented here are raw data that have not yet been quality controlled and calibrated. However, data has been double entered and checked visually. Missing data are due to weather conditions, covid-19 restrictions or staff shortage.\n","locations":["POLYGON((-2.985 54.367, -2.985 54.425, -2.898 54.425, -2.898 54.367, -2.985 54.367))"],"orcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0002-3808-1534"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/24a87e14-3ab4-4c27-be10-e499ad80804a","10.5285/24a87e14-3ab4-4c27-be10-e499ad80804a"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a data from Windermere North Basin, UK, 2019-2020","topic":["0/Environmental survey/","0/Water quality/"],"version":1.0,"view":["public","tinzha"],"shortenedDescription":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at the North Basin of Windermere in Cumbria, England that began in 1945 for some..."},{"publicationDate":"2024-03-15T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["H.","G.","K."],"authorFamilyName":["Feuchtmayr","Rankin","McShane","Le Quesne"],"authorFullName":["Feuchtmayr, H.","Rankin, G.","McShane, G.","Le Quesne, K."],"authorOrcid":["https://orcid.org/0000-0002-2028-4843"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains hourly water temperature data and hourly air temperature data of an experimental mesocosm facility from 21st April to 7th November 2023. The sixteen mesocosms (1 m deep, 2 m diameter) were filled with water from Windermere. The water temperature was measured every five minutes and an hourly average was calculated. Air temperature was measured by a weather station within the mesocosm compound. The experiment aimed to investigate different N:P nutrient ratios and water temperature was measured as this is an important factor needed to understand the results. ","documentType":"GEMINI_DOCUMENT","funder":["European Commission, Directorate-General for Research & Innovation","Natural Environment Research Council"],"grant":["871081 ","NE/X00497X/1"],"identifier":"406aee8f-3b85-4be6-ae7d-c92c8168a06f","incomingCitationCount":0,"givenName":["H.","G.","K."],"familyName":["Feuchtmayr","Rankin","McShane","Le Quesne"],"fullName":["Feuchtmayr, H.","Rankin, G.","McShane, G.","Le Quesne, K."],"keyword":["AQUACOSM-plus","Environmental survey","freshwater","mesocosm experiment","water temperature","air temperature"],"keywordsProject":["AQUACOSM-plus"],"keywordsTheme":["Environmental survey"],"keywordsOther":["freshwater","mesocosm experiment","water temperature","air temperature"],"licence":"Open government licence","lineage":"The water for the 16 mesocosms was collected from Windermere on 29th and 30th March 2023 and nutrients were added to some of the mesocosms throughout the experiment. Water temperature was measured every 5 minutes by platinum resistance thermometers (PRT) shaded by a plastic cover, sited around mid-depth, radially offset by 30 cm from the mesocosms’ side wall and logged by a Campbell Scientific Data Logger. The hourly average presented here is calculated from 5-minutely data over the following hour, e.g., the value for 1 p.m. is the average of the data between 1 and 1:55 p.m. All data are given in GMT (Greenwich Mean Time) and dates from 21st April to 7th November 2023. \n\nWhenever the difference between the hourly averaged two water temperature sensor data was less than 0.2 °C, the average between both temperatures was calculated. If the difference was larger than 0.2 °C, data were checked against the overall average of the temperature sensors recorded by each data logger. Whenever the difference was larger than 0.2 °C, one of the two temperature sensors had drifted either higher than the average or below the average temperature. In those cases, this sensor was ignored and only data from one temperature sensor was used during those occasions (see table in the supporting documentation).\n\nAir temperature was measured at a weather station within the mesocosm compound (Vaisala weather transmitter WXT520) at around 2.7m height.\n","locations":["POLYGON((-2.776 54.013, -2.776 54.015, -2.774 54.015, -2.774 54.013, -2.776 54.013))"],"orcid":["https://orcid.org/0000-0002-2028-4843"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/406aee8f-3b85-4be6-ae7d-c92c8168a06f","10.5285/406aee8f-3b85-4be6-ae7d-c92c8168a06f"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Hourly water temperature of 16 experimental mesocosms and hourly air temperature from April to November 2023","topic":["0/Environmental survey/"],"version":1.0,"view":["public","jenroe"],"shortenedDescription":"This dataset contains hourly water temperature data and hourly air temperature data of an experimental mesocosm facility from 21st April to 7th November 2023. The sixteen mesocosms (1 m deep, 2 m diameter) were filled with water from Windermere. The water temperature..."},{"publicationDate":"2022-12-23T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Unaffiliated"],"authorGivenName":["C.","R.","J."],"authorFamilyName":["Andrews","Snazell","Dick"],"authorFullName":["Andrews, C.","Snazell, R.","Dick, J."],"authorOrcid":["https://orcid.org/0000-0003-2428-272X","https://orcid.org/0000-0002-4180-9338"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Data was collected to look at long-term trends in invertebrate ground predators.  This dataset consists of count data (by gender) for all species of spider collected from three habitats (mire, dwarf-shrub heath, pine woodland) at the Cairngorms Environmental Change Network (ECN) site between 2004 and 2021.\n\nSpiders were collected in pitfall traps on a two-weekly basis between March and early November.  Each habitat contained ten pitfall traps, spaced 10 m apart.  Samples were aggregated by habitat and collection date prior to analysis.  The number of male and females of each species was recorded by the same expert araneologist for the duration (2004-2021).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","NatureScot"],"grant":["NE/R016429/1"],"identifier":"6077cd88-ad40-44bd-806a-fa3cebaa29d7","incomingCitationCount":0,"givenName":["C.","R.","J."],"familyName":["Andrews","Snazell","Dick"],"fullName":["Andrews, C.","Snazell, R.","Dick, J."],"keyword":["Cairngorms","ECN","Environmental Change Network ","Environmental survey","spider"],"keywordsPlace":["Cairngorms"],"keywordsProject":["ECN","Environmental Change Network "],"keywordsTheme":["Environmental survey"],"keywordsOther":["spider"],"licence":"Open government licence","lineage":"Data was collected and processed using ECN standard methodology (available from the ECN website).  \n\nSampling data was crosschecked with returned species data to ensure trapping dates and locations were correct within the dataset.  Additional data was added to clearly label transect age (see supporting documentation).\n\nThe data was manually checked for errors but has not been through an exhaustive QC process which is recommended as good practice prior to use.","locations":["POLYGON((-3.861 57.075, -3.861 57.118, -3.803 57.118, -3.803 57.075, -3.861 57.075))"],"orcid":["https://orcid.org/0000-0003-2428-272X","https://orcid.org/0000-0002-4180-9338"],"organisation":["UK Centre for Ecology & Hydrology","Unaffiliated","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/6077cd88-ad40-44bd-806a-fa3cebaa29d7","10.5285/6077cd88-ad40-44bd-806a-fa3cebaa29d7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"UK Environmental Change Network (ECN) Cairngorm spider data 2004-2021 v2","topic":["0/Environmental survey/"],"version":2.0,"view":["public","danor"],"shortenedDescription":"Data was collected to look at long-term trends in invertebrate ground predators.  This dataset consists of count data (by gender) for all species of spider collected from three habitats (mire, dwarf-shrub heath, pine woodland) at the Cairngorms Environmental Change..."},{"publicationDate":"2025-01-23T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["H.","M.A.","B.A.","A.G.","J.B.","M.","E.B.","G. ","G.","S.J.","S.C."],"authorFamilyName":["Feuchtmayr","Clarke","Dodd","Guyatt","Hunt","James","Kelsall","Mackay","McShane","Rankin","Rhodes","Thackeray","Maberly"],"authorFullName":["Feuchtmayr, H.","Clarke, M.A.","Dodd, B.A.","Guyatt, H.","Hunt, A.G.","James, J.B.","Kelsall, M.","Mackay, E.B.","McShane, G.","Rankin, G.","Rhodes, G.","Thackeray, S.J.","Maberly, S.C."],"authorOrcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0003-3541-5903"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at Blelham Tarn in Cumbria, England that began in 1945 for some variables. The data have been collected by the UK Centre for Ecology & Hydrology (UKCEH). The data available to download comprise surface temperature (TEMP) in degree Celsius, surface oxygen saturation (OXYG) in % air-saturation, Secchi depth (SECC) in metres, alkalinity (ALKA) in µg per litre as CaCO3 and pH. Ammonium (NH4N), nitrate (NO3N), soluble reactive phosphate (PO4P), total phosphorus (TOTP), dissolved reactive silicon expressed as SiO2 (SIO2) and phytoplankton chlorophyll a (TOCA) are all given in µg per litre. Water samples are based on a sample integrated from 0 to 5 m. All data are from January 2021 until the end of 2022.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1","NE/Y006208/1"],"identifier":"3890dcf8-da31-430c-942e-4baa5219a7b7","incomingCitationCount":0,"givenName":["H.","M.A.","B.A.","A.G.","J.B.","M.","E.B.","G. ","G.","S.J.","S.C.","Heidrun"],"familyName":["Feuchtmayr","Clarke","Dodd","Guyatt","Hunt","James","Kelsall","Mackay","McShane","Rankin","Rhodes","Thackeray","Maberly"],"fullName":["Feuchtmayr, H.","Clarke, M.A.","Dodd, B.A.","Guyatt, H.","Hunt, A.G.","James, J.B.","Kelsall, M.","Mackay, E.B.","McShane, G.","Rankin, G.","Rhodes, G.","Thackeray, S.J.","Maberly, S.C."],"keyword":["Lake District","UK-SCAPE","NC-UK","Environmental survey","Lake monitoring","Lake water temperature","Lake water chemistry","dissolved oxygen","secchi depth","algae","phytoplankton"],"keywordsPlace":["Lake District"],"keywordsProject":["UK-SCAPE","NC-UK"],"keywordsTheme":["Environmental survey"],"keywordsOther":["Lake monitoring","Lake water temperature","Lake water chemistry","dissolved oxygen","secchi depth","algae","phytoplankton"],"licence":"Open government licence","lineage":"Please note that the data presented here are raw data that have not yet been quality-controlled and calibrated. However, the data has been double-entered and checked visually. Missing data are due to weather conditions, COVID-19 restrictions, or staff shortages.\nMeasurements are made from a boat at a marked location (buoy) at the deepest part of the lake. When it was not possible to visit the buoy, samples were taken from the shore, thus water samples were not integrated on these occasions, marked as Flag 2.\n","locations":["POLYGON((-2.985 54.393, -2.985 54.399, -2.973 54.399, -2.973 54.393, -2.985 54.393))"],"orcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0003-3541-5903"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/3890dcf8-da31-430c-942e-4baa5219a7b7","10.5285/3890dcf8-da31-430c-942e-4baa5219a7b7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a data from Blelham Tarn, UK, 2021-2022","topic":["0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at Blelham Tarn in Cumbria, England that began in 1945 for some variables. The data..."},{"publicationDate":"2023-05-30T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Unaffiliated","Botanical Society of Britain and Ireland","Vegetation Survey and Assessment Ltd"],"authorGivenName":["L.E. ","P. ","R. ","S.L.","J.","R.F.","O.L."],"authorFamilyName":["Ridding","Hawes","Walls","Pilkington","Bailey","Pywell","Pescott"],"authorFullName":["Ridding, L.E.","Hawes, P.","Walls, R.","Pilkington, S.L.","Bailey, J.","Pywell, R.F.","Pescott, O.L."],"authorOrcid":["https://orcid.org/0000-0003-3141-8795","https://orcid.org/0000-0001-6431-9959","https://orcid.org/0000-0002-0685-8046"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/02krbn758"],"catalogue":"eidc","description":"Vascular plant and bryophyte survey data from a 33-year chronosequence on bare chalk, used to investigate primary succession. The bare chalk plots were created from archaeological excavations on Down Farm, north Dorset, between the years 1986 and 2018, resulting in 13 different plots. The vascular plant survey was carried out in July 2019 using 50 cm x 50 cm quadrats. Quadrats were recorded every 1 m along a 16 m transect in each of the 13 plots. The bryophyte survey was carried out in February 2020 using 20 cm x 20 cm quadrats, along the same transects for 11 of the 13 plots. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","Biotechnology and Biological Sciences Research Council"],"grant":["NE/N018125/1 "],"identifier":"358eb380-74a0-4acd-9df2-696fdf13a6d7","incomingCitationCount":0,"givenName":["L.E. ","P. ","R. ","S.L.","J.","R.F.","O.L."],"familyName":["Ridding","Hawes","Walls","Pilkington","Bailey","Pywell","Pescott"],"fullName":["Ridding, L.E.","Hawes, P.","Walls, R.","Pilkington, S.L.","Bailey, J.","Pywell, R.F.","Pescott, O.L."],"keyword":["Dorset","Environmental survey","vascular plant","succession","chalk","bryophyte"],"keywordsPlace":["Dorset"],"keywordsTheme":["Environmental survey"],"keywordsOther":["vascular plant","succession","chalk","bryophyte"],"licence":"Open government licence","lineage":"A total of 13 transects (16 m in length) were set up in July 2019, with one in each of the excavated blocks dated 1986, 2004–2008, and 2013–2018 (2 blocks were excavated in 2016). The percentage cover of vascular plant species were recorded in 50 cm x 50 cm quadrats every 1 m along each of the 13 transects, giving a total of 208 quadrats. Vascular plants were identified to species level, with the exception of Taraxacum microspecies. The percentage cover of bryophytes were recorded in February 2020 using the same methodology, but with a 20 cm x 20 cm quadrat. Two plots were not recorded for bryophytes, the first of which (excavated in 2006) was due to rubble left on the plot, which would have influenced the colonisation of bryophytes and the second plot (excavated in 2016) was excluded due to time constraints, as there was already another plot recorded of this age. Bryophytes were identified to species level, with the exception of a few small and/or infertile individuals, where it was only possible to classify specimens to a group level (affecting some Didymodon and Bryum species).\nData were collected by experienced field ecologists. Paper data sheets were digitised into Excel and were checked for any anomalies.\n","locations":["POLYGON((-2.007 50.929, -2.007 50.933, -2.001 50.933, -2.001 50.929, -2.007 50.929))"],"orcid":["https://orcid.org/0000-0003-3141-8795","https://orcid.org/0000-0001-6431-9959","https://orcid.org/0000-0002-0685-8046"],"organisation":["UK Centre for Ecology & Hydrology","Unaffiliated","Botanical Society of Britain and Ireland","Vegetation Survey and Assessment Ltd","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/358eb380-74a0-4acd-9df2-696fdf13a6d7","10.5285/358eb380-74a0-4acd-9df2-696fdf13a6d7"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/02krbn758","https://ror.org/04xw4m193"],"state":"published","title":"Vascular plant and bryophyte survey from a 33-year chronosequence on bare chalk, Dorset, 2019-2020","topic":["0/Environmental survey/"],"version":1.0,"view":["public","shofer"],"shortenedDescription":"Vascular plant and bryophyte survey data from a 33-year chronosequence on bare chalk, used to investigate primary succession. The bare chalk plots were created from archaeological excavations on Down Farm, north Dorset, between the years 1986 and 2018, resulting in..."},{"publicationDate":"2021-05-14T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["H.","H.T.","M.A.","M.M.","B.A.","J.","J.B.","P.O.","E.B.","G.","S.J.","S.C."],"authorFamilyName":["Feuchtmayr","Carter","Clarke","De Ville","Dodd","Fletcher","James","Keenan","Mackay","Rhodes","Thackeray","Maberly"],"authorFullName":["Feuchtmayr, H.","Carter, H.T.","Clarke, M.A.","De Ville, M.M.","Dodd, B.A.","Fletcher, J.","James, J.B.","Keenan, P.O.","Mackay, E.B.","Rhodes, G.","Thackeray, S.J.","Maberly, S.C."],"authorOrcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0002-3808-1534","https://orcid.org/0000-0002-8788-8449","https://orcid.org/0000-0003-3541-5903"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at the South Basin of Windermere in Cumbria, England that began in 1945 for some variables. The data have been collected by the UK Centre for Ecology & Hydrology (UKCEH). The data available to download comprise surface temperature (TEMP) in degree Celsius, surface oxygen saturation (OXYG) in % air-saturation, Secchi depth (SECC) in metres, alkalinity (ALKA) in µg per litre as CaCO3 and pH. Ammonium (NH4N), nitrate (NO3N), soluble reactive phosphate (PO4P), total phosphorus (TOTP), dissolved reactive silicon expressed as SiO2 (SIO2) and phytoplankton chlorophyll a (TOCA) are all given in µg per litre. Water samples are based on a sample integrated from 0 to 7m. Measurements are made from a boat at a marked location (buoy) at the deepest part of the lake. All data are from January 2014 until the end of 2018.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"1ccff678-9e27-4290-8f12-a9d0c048d52f","incomingCitationCount":0,"givenName":["H.","H.T.","M.A.","M.M.","B.A.","J.","J.B.","P.O.","E.B.","G.","S.J.","S.C."],"familyName":["Feuchtmayr","Carter","Clarke","De Ville","Dodd","Fletcher","James","Keenan","Mackay","Rhodes","Thackeray","Maberly"],"fullName":["Feuchtmayr, H.","Carter, H.T.","Clarke, M.A.","De Ville, M.M.","Dodd, B.A.","Fletcher, J.","James, J.B.","Keenan, P.O.","Mackay, E.B.","Rhodes, G.","Thackeray, S.J.","Maberly, S.C."],"keyword":["Water quality","Environmental survey","UK-SCAPE"],"keywordsTheme":["Water quality","Environmental survey"],"keywordsOther":["UK-SCAPE"],"licence":"Open government licence","lineage":"Water samples are based on a sample integrated from 0 to 7 m. Measurements are made from a boat at a marked location (buoy) at the deepest part of the lake. Samples were analysed in UKCEH laboratories.","locations":["POLYGON((-3.005 54.264, -3.005 54.388, -2.888 54.388, -2.888 54.264, -3.005 54.264))"],"orcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0002-3808-1534","https://orcid.org/0000-0002-8788-8449","https://orcid.org/0000-0003-3541-5903"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/1ccff678-9e27-4290-8f12-a9d0c048d52f","10.5285/1ccff678-9e27-4290-8f12-a9d0c048d52f"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a data from Windermere South Basin, 2014 to 2018","topic":["0/Water quality/","0/Environmental survey/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at the South Basin of Windermere in Cumbria, England that began in 1945 for some..."},{"publicationDate":"2021-05-14T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["H.","M.A.","M.M.","B.A.","J.","J.B.","E.B.","M.G.","G.","S.J.","S.C."],"authorFamilyName":["Feuchtmayr","Clarke","De Ville","Dodd","Fletcher","James","Mackay","Pereira","Rhodes","Thackeray","Maberly"],"authorFullName":["Feuchtmayr, H.","Clarke, M.A.","De Ville, M.M.","Dodd, B.A.","Fletcher, J.","James, J.B.","Mackay, E.B.","Pereira, M.G.","Rhodes, G.","Thackeray, S.J.","Maberly, S.C."],"authorOrcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0002-3808-1534","https://orcid.org/0000-0002-8788-8449","https://orcid.org/0000-0003-3541-5903"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at Esthwaite Water in Cumbria, England that began in 1945 for some variables. 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When it was not possible to visit the buoy, samples were taken from the shore. Water samples are based on a sample integrated from 0 to 5 m. Samples were analysed in UKCEH laboratories.","locations":["POLYGON((-3.001 54.345, -3.001 54.374, -2.966 54.374, -2.966 54.345, -3.001 54.345))"],"orcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0002-3808-1534","https://orcid.org/0000-0002-8788-8449","https://orcid.org/0000-0003-3541-5903"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/89ff964d-4aed-4b66-8669-71d42c5add52","10.5285/89ff964d-4aed-4b66-8669-71d42c5add52"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a data from Esthwaite Water, 2014 to 2018","topic":["0/Environmental survey/","0/Water quality/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at Esthwaite Water in Cumbria, England that began in 1945 for some variables. 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Unfortunately, due to funding shortages, the long-term monitoring of Bassenthwaite Lake ended early 2019.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"fe579fbf-e371-4320-8875-a8af8736f3e5","incomingCitationCount":0,"givenName":["H.","S.","H.T.","M.A.","M.M.","B.A.","J.","J.B.","E.B.","S.J.","S.C."],"familyName":["Feuchtmayr","Beith","Carter","Clarke","De Ville","Dodd","Fletcher","James","Mackay","Thackeray","Maberly"],"fullName":["Feuchtmayr, H.","Beith, S.","Carter, H.T.","Clarke, M.A.","De Ville, M.M.","Dodd, B.A.","Fletcher, J.","James, J.B.","Mackay, E.B.","Thackeray, S.J.","Maberly, S.C."],"keyword":["UK-SCAPE","Water quality","Environmental survey"],"keywordsProject":["UK-SCAPE"],"keywordsTheme":["Water quality","Environmental survey"],"licence":"Open government licence","lineage":"Measurements are made from a boat at a marked location (buoy) at the deepest part of the lake. 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Data consist of individual observations of plants, and other habitat characteristics, at the metre-scale; observations are accompanied by percentage cover information recorded according to the Domin frequency-abundance scale commonly used in plant community ecology. Other information provided includes the plot type (size, shape, according to the NPMS classification), the volunteer-recorded NPMS habitat, the date of sampling, and information regarding the spatial location of the plot. Information contained within the metadata file should allow users to reconstruct the sampling history (including gaps) of any plot that has been sampled within the NPMS scheme between 2015 and 2023.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1 "],"identifier":"eb135726-9039-441c-8335-1aab5f6dda21","incomingCitationCount":0,"fullName":["National Plant Monitoring Scheme "],"keyword":["National Plant Monitoring Scheme","NMPS","UK-SCAPE","Environmental survey","plant community","habitat","environmental monitoring","vegetation"],"keywordsProject":["National Plant Monitoring Scheme","NMPS","UK-SCAPE"],"keywordsTheme":["Environmental survey"],"keywordsOther":["plant community","habitat","environmental monitoring","vegetation"],"licence":"Open government licence","lineage":"Data are collected directly from volunteers into a custom Indicia database system (www.indicia.org.uk) through the National Plant Monitoring Scheme (NPMS) website (www.npms.org.uk) or app. The Indicia system is built on a PostgreSQL/PostGIS database, and the data presented here were extracted directly from this master database using appropriate SQL queries. 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When it was not possible to visit the buoy, samples were taken from the shore, thus water samples were not integrated on these occasions, marked as Flag 2. \nPlease note that the data presented here are raw data that have not yet been quality controlled and calibrated. However, data has been double entered and checked visually. Missing data are due to weather conditions, covid-19 restrictions or staff shortage.\n","locations":["POLYGON((-3.001 54.345, -3.001 54.374, -2.966 54.374, -2.966 54.345, -3.001 54.345))"],"orcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0002-3808-1534","https://orcid.org/0000-0003-3541-5903"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/26ea7dfb-59f2-4dc5-b1ee-e9270167a6a2","10.5285/26ea7dfb-59f2-4dc5-b1ee-e9270167a6a2"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a data from Esthwaite Water, UK, 2019-2020","topic":["0/Environmental survey/"],"version":1.0,"view":["public","tinzha"],"shortenedDescription":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at Esthwaite Water in Cumbria, England that began in 1945 for some variables. The..."},{"publicationDate":"2020-02-27T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","University of Innsbruck"],"authorGivenName":["R.","M.","H.M.","J.G.","R.L.","H.C.","N.P."],"authorFamilyName":["Morrison","Brooks","Cooper","Evans","Rowe","Ward","McNamara"],"authorFullName":["Morrison, R.","Brooks, M.","Cooper, H.M.","Evans, J.G.","Rowe, R.L.","Ward, H.C.","McNamara, N.P."],"authorOrcid":["https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0002-7439-0393","https://orcid.org/0000-0002-1382-3407","https://orcid.org/0000-0002-7554-821X","https://orcid.org/0000-0001-8881-185X","https://orcid.org/0000-0002-5143-5819"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains time series observations of surface-atmosphere exchanges of net ecosystem carbon dioxide exchange (NEE), sensible heat (H) and latent heat (LE), and momentum (τ) measured at a field of winter wheat in Lincolnshire, UK during the 2012 growing season. \n\nTurbulent flux densities were monitored using the micrometeorological eddy covariance (EC) technique between 5th April 2012 and 8th August 2012. The dataset includes ancillary weather and soil physics observations, as well as variables describing atmospheric turbulence and the quality of the turbulent flux observations.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"c00ac145-6a55-4698-a6ed-13c95d178c96","incomingCitationCount":0,"givenName":["R.","M.","H.M.","J.G.","R.L.","H.C.","N.P.","Hollie"],"familyName":["Morrison","Brooks","Cooper","Evans","Rowe","Ward","McNamara"],"fullName":["Morrison, R.","Brooks, M.","Cooper, H.M.","Evans, J.G.","Rowe, R.L.","Ward, H.C.","McNamara, N.P.","Cooper, H."],"keyword":["Soil","Environmental survey","carbon dioxide","carbon dioxide flux","energy  flux","water flux"],"keywordsTheme":["Soil","Environmental survey"],"keywordsOther":["carbon dioxide","carbon dioxide flux","energy  flux","water flux"],"licence":"Open government licence","lineage":"Turbulent flux densities were calculated from the raw EC data using the EddyPRO® Flux Calculation Software Version 6.1.\n\nQuality Control of EC data involved removal of statistical outliers and tests that theoretical requirements for the successful application of the EC technique were not violated significantly. \n\nData gaps in EC data (NEE, LE, H) and the partitioning of NEE into gross ecosystem production and total ecosystem production were performed using the REddyProc Package for R (Reichstein et al., 2019).\n\nFurther details are available in the supporting documentation.","locations":["POLYGON((-0.619 53.294, -0.619 53.345, -0.523 53.345, -0.523 53.294, -0.619 53.294))"],"orcid":["https://orcid.org/0000-0002-1847-3127","https://orcid.org/0000-0002-7439-0393","https://orcid.org/0000-0002-1382-3407","https://orcid.org/0000-0002-7554-821X","https://orcid.org/0000-0001-8881-185X","https://orcid.org/0000-0002-5143-5819"],"organisation":["UK Centre for Ecology & Hydrology","University of Innsbruck","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c00ac145-6a55-4698-a6ed-13c95d178c96","10.5285/c00ac145-6a55-4698-a6ed-13c95d178c96"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Eddy covariance measurements of carbon dioxide, energy and water fluxes at a winter wheat field, Lincolnshire, UK, 2012","topic":["0/Soil/","0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains time series observations of surface-atmosphere exchanges of net ecosystem carbon dioxide exchange (NEE), sensible heat (H) and latent heat (LE), and momentum (τ) measured at a field of winter wheat in Lincolnshire, UK during the 2012 growing season...."},{"publicationDate":"2020-03-11T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","University of Liverpool","Ptyxis Ecology","Natural England"],"authorGivenName":["R.J.","R.H.","J.","M.","C.M."],"authorFamilyName":["Rose","Marrs","O'Reilly","Furness","Wood"],"authorFullName":["Rose, R.J.","Marrs, R.H.","O'Reilly, J.","Furness, M.","Wood, C.M."],"authorOrcid":["https://orcid.org/0000-0001-9993-5743","https://orcid.org/0000-0002-0394-2998"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"The dataset consists of plant species data from a range of upland vegetation types.  The study sites are situated within the Moor House National Nature Reserve in the North Pennines, UK.  The area is grazed by free-ranging sheep and paired plots of grazed and ungrazed vegetation were set up at nine locations between 1953 and 1972.  These plots have been monitored using the same (pin frame) methods at irregular intervals between their establishment and 2016.  Within each plot fixed transect and frame positions are used.  The data includes structural and frequency data for vascular plants and presence/absence data for bryophytes and lichens.\n\nThe plots were set up and are currently maintained by Natural England (NE) and its predecessor bodies and since 1982 they have been monitored by the Environmental Change Network (ECN) through the UK Centre for Ecology and Hydrology (UKCEH).","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"c72ab043-1b02-42c9-94e8-c1cae42b3dc8","incomingCitationCount":1,"givenName":["R.J.","R.H.","J.","M.","C.M.","Rob"],"familyName":["Rose","Marrs","O'Reilly","Furness","Wood"],"fullName":["Rose, R.J.","Marrs, R.H.","O'Reilly, J.","Furness, M.","Wood, C.M.","Rose, R."],"keyword":["Moor House National Nature Reserve","Biodiversity","Environmental survey","Land cover","vegetation","grazing"],"keywordsPlace":["Moor House National Nature Reserve"],"keywordsTheme":["Biodiversity","Environmental survey","Land cover"],"keywordsOther":["vegetation","grazing"],"licence":"Open government licence","lineage":"The fixed plots are permanently marked with wooden posts or metal markers so that the transect and pin frame positions can be relocated using tape measures and a metal detector.  All surveys were done by botanical experts with previous upland vegetation recording experience and specimens not identified in the field were collected and examined in the laboratory.  The data was collected on paper recording sheets and double checked post entry into the datafile.","locations":["POLYGON((-2.373 54.624, -2.373 54.785, -2.05 54.785, -2.05 54.624, -2.373 54.624))"],"orcid":["https://orcid.org/0000-0001-9993-5743","https://orcid.org/0000-0002-0394-2998"],"organisation":["UK Centre for Ecology & Hydrology","University of Liverpool","Ptyxis Ecology","Natural England","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/c72ab043-1b02-42c9-94e8-c1cae42b3dc8","10.5285/c72ab043-1b02-42c9-94e8-c1cae42b3dc8"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Long-term monitoring of vegetation in exclosure and grazing plots at Moor House National Nature Reserve, 1953-2016","topic":["0/Biodiversity/","0/Environmental survey/","0/Land cover/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"The dataset consists of plant species data from a range of upland vegetation types.  The study sites are situated within the Moor House National Nature Reserve in the North Pennines, UK.  The area is grazed by free-ranging sheep and paired plots of grazed and ungrazed..."},{"publicationDate":"2025-01-23T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["H.","H.T.","M.A.","B.A.","J.B.","P.O.","M.","E.B.","G.","S.J.","S.C."],"authorFamilyName":["Feuchtmayr","Carter","Clarke","Dodd","James","Keenan","Kelsall","Mackay","McShane","Rankin","Rhodes","Thackeray","Maberly"],"authorFullName":["Feuchtmayr, H.","Carter, H.T.","Clarke, M.A.","Dodd, B.A.","James, J.B.","Keenan, P.O.","Kelsall, M.","Mackay, E.B.","McShane, G.","Rankin, G.","Rhodes, G.","Thackeray, S.J.","Maberly, S.C."],"authorOrcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0003-3541-5903"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at the South Basin of Windermere in Cumbria, England that began in 1945 for some variables. The data have been collected by the UK Centre for Ecology & Hydrology (UKCEH). The data available to download comprise surface temperature (TEMP) in degree Celsius, surface oxygen saturation (OXYG) in % air-saturation, Secchi depth (SECC) in metres, alkalinity (ALKA) in µg per litre as CaCO3 and pH. Ammonium (NH4N), nitrate (NO3N), soluble reactive phosphate (PO4P), total phosphorus (TOTP), dissolved reactive silicon expressed as SiO2 (SIO2) and phytoplankton chlorophyll a (TOCA) are all given in µg per litre. Water samples are based on a sample integrated from 0 to 7m. All data are from January 2021 until the end of 2022.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/S011641/1","NE/Y006208/1"],"identifier":"732f6134-bb94-44af-99b1-8f2732532bf9","incomingCitationCount":0,"givenName":["H.","H.T.","M.A.","B.A.","J.B.","P.O.","M.","E.B.","G.","S.J.","S.C.","Heidrun"],"familyName":["Feuchtmayr","Carter","Clarke","Dodd","James","Keenan","Kelsall","Mackay","McShane","Rankin","Rhodes","Thackeray","Maberly"],"fullName":["Feuchtmayr, H.","Carter, H.T.","Clarke, M.A.","Dodd, B.A.","James, J.B.","Keenan, P.O.","Kelsall, M.","Mackay, E.B.","McShane, G.","Rankin, G.","Rhodes, G.","Thackeray, S.J.","Maberly, S.C."],"keyword":["Lake District","UK-SCAPE","NC-UK","Environmental survey","Lake monitoring ","lake water temperature","Lake water chemistry","secchi depth","algae","phytoplankton","dissolved oxygen"],"keywordsPlace":["Lake District"],"keywordsProject":["UK-SCAPE","NC-UK"],"keywordsTheme":["Environmental survey"],"keywordsOther":["Lake monitoring ","lake water temperature","Lake water chemistry","secchi depth","algae","phytoplankton","dissolved oxygen"],"licence":"Open government licence","lineage":"Please note that the data presented here are raw data that have not yet been quality controlled and calibrated. However, data has been double entered and checked visually. Missing data are due to weather conditions, covid-19 restrictions or staff shortages.\nMeasurements are made from a boat at a marked location (buoy) at the deepest part of the lake.\n","locations":["POLYGON((-3.005 54.264, -3.005 54.388, -2.888 54.388, -2.888 54.264, -3.005 54.264))"],"orcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0003-3541-5903"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/732f6134-bb94-44af-99b1-8f2732532bf9","10.5285/732f6134-bb94-44af-99b1-8f2732532bf9"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a data from Windermere South Basin, UK, 2021-2022","topic":["0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at the South Basin of Windermere in Cumbria, England that began in 1945 for some..."},{"publicationDate":"2020-03-27T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University"],"authorGivenName":["S.","W.","A."],"authorFamilyName":["Cavers","Wachowiak","Perry"],"authorFullName":["Cavers, S.","Wachowiak, W.","Perry, A."],"authorOrcid":["https://orcid.org/0000-0003-2139-9236","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0002-7889-7597"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/04g6bbq64"],"catalogue":"eidc","description":"The dataset contains  genotypes for samples used to validate a 50K single nucleotide polymorphism (SNP, DNA mutation) Axiom array for Scots pine (Pinus sylvestris) and closely related members of the Pinus mugo complex.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"7ee55609-d6b1-4693-8b36-2bf84fef76c2","incomingCitationCount":1,"givenName":["S.","W.","A.","Stephen"],"familyName":["Cavers","Wachowiak","Perry"],"fullName":["Cavers, S.","Wachowiak, W.","Perry, A."],"keyword":["Biodiversity","Environmental survey","Natural selection ","Speciation ","Divergence ","Polymorphism ","Genotyping ","SNPs","Population genomics ","Genomic ","Micoarray "],"keywordsTheme":["Biodiversity","Environmental survey"],"keywordsOther":["Natural selection ","Speciation ","Divergence ","Polymorphism ","Genotyping ","SNPs","Population genomics ","Genomic ","Micoarray "],"licence":"Open government licence","lineage":"Samples &  Validation of the array was carried out using a subset of 87 samples, which included four species of pine (Pinus sylvestris: SY; P. mugo: MU; P. uncinata: UN; P. uliginosa: UL). DNA was extracted from needles using a Qiagen DNeasy 96 kit following the manufacturer’s instructions. Needles were dried on silica gel prior to extraction and DNA was quantified using a Qubit spectrophotometer to ensure a minimum standardized concentration of 35ng/µl. The quality of genomic DNA was also checked visually for fragmentation on 1%  agarose gel.\n\n Genotyping was done at Edinburgh Genomics following DNA amplification, fragmentation, chip hybridisation, single-base extension through DNA ligation and signal amplification performed according to the Affymetrix Axiom® Assay protocol. Genotyping was performed in 384-well format on a GeneTitan according to the manufacturer’s procedure. Genotype calls were performed using Axiom Analysis Suite software as recommended by the manufacturer (ThermoFisher). Samples were assigned to an analysis group based on their call rate (CR) and dish QC (DQC: a metric provided by ThermoFisher which is generated by measuring signals at multiple sites in the genome known not to vary among individuals), using the following thresholds: DQC 'high' ≥ 0.82; DQC 'low' < 0.82; CR 'high' ≥ 96; CR 'low' < 96. Analyses: 1) DQC high + CR high; 2) DQC high + CR low; 3) DQC low + CR low. High quality samples (N=529), with high CR and DQC, were used to set thresholds for allele calls. Posteriors for allele calls were subsequently used as priors for analyses 2 (N = 753) and 3 (N = 251).","locations":["POLYGON((-18.359 37.192, -18.359 67.115, 24.839 67.115, 24.839 37.192, -18.359 37.192))"],"orcid":["https://orcid.org/0000-0003-2139-9236","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0002-7889-7597"],"organisation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/7ee55609-d6b1-4693-8b36-2bf84fef76c2","10.5285/7ee55609-d6b1-4693-8b36-2bf84fef76c2"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04g6bbq64","https://ror.org/04xw4m193"],"state":"published","title":"Scots pine single nucleotide polymorphism (SNP) genotypes for Axiom array validation","topic":["0/Biodiversity/","0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"The dataset contains  genotypes for samples used to validate a 50K single nucleotide polymorphism (SNP, DNA mutation) Axiom array for Scots pine (Pinus sylvestris) and closely related members of the Pinus mugo complex."},{"publicationDate":"2024-11-25T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["L.","S.","E.","P.A.","B.A.","H.","I.","M.","A.","C.M.","D.A."],"authorFamilyName":["Bentley","Reinsch","Dhiedt","Henrys","Emmett","Risser","Tandy","Lebron","Brentegani","Garbutt","Wood","Robinson"],"authorFullName":["Bentley, L.","Reinsch, S.","Dhiedt, E.","Henrys, P.A.","Emmett, B.A.","Risser, H.","Tandy, S.","Lebron, I.","Brentegani, M.","Garbutt, A.","Wood, C.M.","Robinson, D.A."],"authorOrcid":["https://orcid.org/0000-0001-5055-7673","https://orcid.org/0000-0003-4649-0677","https://orcid.org/0000-0003-2575-6800","https://orcid.org/0000-0003-4758-1482","https://orcid.org/0000-0002-2713-4389","https://orcid.org/0000-0001-9819-1092","https://orcid.org/0000-0003-0662-0991","https://orcid.org/0000-0001-8610-9717","https://orcid.org/0000-0002-9145-9786","https://orcid.org/0000-0002-0394-2998","https://orcid.org/0000-0001-7290-4867"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset consists of measures of topsoil (0-15 cm) physico-chemical properties from 575 soils sampled from 146 x 1 km squares across Great Britain collected in winter 2021 as part of the UKCEH Countryside Survey. The properties included are: pH, soil organic matter (loss on ignition, LOI), derived carbon concentration and carbon stock from LOI (SOC), soil group, soil bulk density of fine earth, soil moisture of wet soil, fine earth volumetric water content (dry), and nitrogen concentration and stock.\n\nThe UKCEH Countryside Survey is a unique study or 'audit' of the natural resources of the UK's countryside. The sample sites are chosen from a stratified random sample, based on a 15 by 15 km grid of GB. Surveys have been carried out in 1978, 1984, 1990, 1998 and 2007 by the UK Centre for Ecology & Hydrology (UKCEH) and predecessors, with repeated visits to most of the squares. The countryside is sampled and surveyed using rigorous scientific methods, allowing us to compare new results with those from previous surveys. In this way, we can detect the gradual and subtle changes that occur in the UK's countryside over time. In addition to soil data, vegetation species data are also gathered by the current phase of the UKCEH Countryside Survey. \n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability and through the UKCEH National Capability for UK Challenges Programme NE/Y006208/1.\n","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1","NE/Y006208/1"],"identifier":"38d6f5b4-4d03-4006-aa55-91894378ef27","incomingCitationCount":0,"givenName":["S.","L.","E.","P.A.","B.A.","H.","I.","M.","A.","C.M.","D.A."],"familyName":["Reinsch","Bentley","Dhiedt","Henrys","Emmett","Risser","Tandy","Lebron","Brentegani","Garbutt","Wood","Robinson"],"fullName":["Reinsch, S.","Bentley, L.","Dhiedt, E.","Henrys, P.A.","Emmett, B.A.","Risser, H.","Tandy, S.","Lebron, I.","Brentegani, M.","Garbutt, A.","Wood, C.M.","Robinson, D.A."],"keyword":["Environmental survey","derived carbon concentration","electrical conductivity","fine earth volumetric water content","SOC","soil","soil bulk density of fine earth","soil nitrogen","soil organic matter","soil pH","soil organic carbon","UK-SCAPE","NC UK","Great Britain"],"keywordsTheme":["Environmental survey"],"keywordsOther":["derived carbon concentration","electrical conductivity","fine earth volumetric water content","SOC","soil","soil bulk density of fine earth","soil nitrogen","soil organic matter","soil pH","soil organic carbon","UK-SCAPE","NC UK","Great Britain"],"licence":"Open government licence","lineage":"The 1km grid squares sampled in the topsoil winter survey were selected from the whole Countryside Survey (CS) square population. Squares featuring only non-target habitats (Broadleaved and Coniferous woodlands, Bogs and Fen, Marsh, and Swamp) were excluded. Care was taken to replicate the CS square distribution within environmental zones as closely as possible within the given constraints.\n\nWithin each of the 146 x 1-km sample squares, a set of soil samples were taken from up to 5 pre-determined randomly dispersed locations (where practically possible). The soil sample analysed for soil metrics was taken using a black plastic core ('C-core'), 15 cm long, from a location co-incident with vegetation surveys.\nAfter collection, the soil cores were refrigerated and stored until posted, usually within a couple of days, to laboratories at the UK Centre for Ecology & Hydrology (UKCEH), Bangor and Lancaster. Analysed data were transferred to secure databases at UKCEH following sample analysis.\n\nA robust system is in place to apply quality assurance (QA) checks to the data on a regular basis. UKCEH laboratory staff and data scientists developed a data workflow to ensure the highest possible data standard using R-scripts and guidance documents. 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