{"numFound":75,"page":2,"rows":20,"url":"http://catalogue.ceh.ac.uk/eidc/documents?page=2&facet=topic%7C0%2FEnvironmental+survey%2F&facet=topic%7C0%2FRadioecology%2F&facet=funder%7CNatural+Environment+Research+Council&facet=topic%7C0%2FEnvironmental+risk%2F&facet=funder%7CRadioactive+Waste+Management+Ltd&facet=funder%7CEnvironment+Agency&facet=rightsHolder%7CUK+Centre+for+Ecology+%26+Hydrology","prevPage":"http://catalogue.ceh.ac.uk/eidc/documents?facet=topic%7C0%2FEnvironmental+survey%2F&facet=topic%7C0%2FRadioecology%2F&facet=funder%7CNatural+Environment+Research+Council&facet=topic%7C0%2FEnvironmental+risk%2F&facet=funder%7CRadioactive+Waste+Management+Ltd&facet=funder%7CEnvironment+Agency&facet=rightsHolder%7CUK+Centre+for+Ecology+%26+Hydrology","nextPage":"http://catalogue.ceh.ac.uk/eidc/documents?page=3&facet=topic%7C0%2FEnvironmental+survey%2F&facet=topic%7C0%2FRadioecology%2F&facet=funder%7CNatural+Environment+Research+Council&facet=topic%7C0%2FEnvironmental+risk%2F&facet=funder%7CRadioactive+Waste+Management+Ltd&facet=funder%7CEnvironment+Agency&facet=rightsHolder%7CUK+Centre+for+Ecology+%26+Hydrology","results":[{"publicationDate":"2020-03-24T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["S.G.","J.W.","P.A.","H.A.","B.M.","R.F."],"authorFamilyName":["Jarvis","Redhead","Henrys","Risser","Da Silva Osório","Pywell"],"authorFullName":["Jarvis, S.G.","Redhead, J.W.","Henrys, P.A.","Risser, H.A.","Da Silva Osório, B.M.","Pywell, R.F."],"authorOrcid":["https://orcid.org/0000-0001-5382-5135","https://orcid.org/0000-0002-2233-3848","https://orcid.org/0000-0003-4758-1482","https://orcid.org/0000-0001-9819-1092","https://orcid.org/0000-0001-5540-4203","https://orcid.org/0000-0001-6431-9959"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"CEH Land Cover plus: Pesticides maps annual average pesticide applications across England, Wales and Scotland. 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The product builds upon the Centre for Ecology & Hydrology (CEH) Land Cover® Plus: Crops product. \n\nThese maps were created under the NERC funded ASSIST (Achieving Sustainable Agricultural Systems) project to enable exploration of the impacts of agrochemical usage on the environment, enabling farmers and policymakers to implement better, more sustainable agricultural practices.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"99a2d3a8-1c7d-421e-ac9f-87a2c37bda62","incomingCitationCount":4,"givenName":["S.G.","J.W.","P.A.","H.A.","B.M.","R.F."],"familyName":["Jarvis","Redhead","Henrys","Risser","Da Silva Osório","Pywell"],"fullName":["Jarvis, S.G.","Redhead, J.W.","Henrys, P.A.","Risser, H.A.","Da Silva Osório, B.M.","Pywell, R.F."],"keyword":["ASSIST","Achieving Sustainable Agricultural Systems","Mapping","Land use","Agriculture","Environmental risk","2,4-DB","2,4-D","Acetamiprid","Active 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environment, enabling farmers and policymakers to implement better, more sustainable agricultural practices.\n\nThe maps use data from the Fera Pesticide Utilisation Surveys (PUS), SASA Pesticide Survey Unit and CEH Land Cover® plus: Crops and have been assessed for quality. For further information, please see the supporting documentation available with this data product.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0001-5382-5135","https://orcid.org/0000-0002-2233-3848","https://orcid.org/0000-0003-4758-1482","https://orcid.org/0000-0001-9819-1092","https://orcid.org/0000-0001-5540-4203","https://orcid.org/0000-0001-6431-9959"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/99a2d3a8-1c7d-421e-ac9f-87a2c37bda62","10.5285/99a2d3a8-1c7d-421e-ac9f-87a2c37bda62"],"resourceStatus":"Controlled","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"CEH Land Cover plus: Pesticides 2012-2017 (England, Scotland and Wales)","topic":["0/Mapping/","0/Land use/","0/Agriculture/","0/Environmental risk/"],"version":1.0,"view":["public","clamw"],"shortenedDescription":"CEH Land Cover plus: Pesticides maps annual average pesticide applications across England, Wales and Scotland. The product provides application estimates for 162 different active ingredients including herbicides, insecticides, molluscicides and fungicides. It is produced..."},{"publicationDate":"2021-05-14T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["H.","S.","H.T.","M.A.","M.M.","B.A.","J.","J.B.","E.B.","S.J.","S.C."],"authorFamilyName":["Feuchtmayr","Beith","Carter","Clarke","De Ville","Dodd","Fletcher","James","Mackay","Thackeray","Maberly"],"authorFullName":["Feuchtmayr, H.","Beith, S.","Carter, H.T.","Clarke, M.A.","De Ville, M.M.","Dodd, B.A.","Fletcher, J.","James, J.B.","Mackay, E.B.","Thackeray, S.J.","Maberly, S.C."],"authorOrcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0002-3808-1534","https://orcid.org/0000-0002-8788-8449","https://orcid.org/0000-0003-3541-5903"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling by the UK Centre for Ecology & Hydrology (UKCEH) at Bassenthwaite Lake in Cumbria, England. The data available to download comprise surface temperature (TEMP) in degree Celsius, surface oxygen saturation (OXYG) in % air-saturation, Secchi depth (SECC) in metres, alkalinity (ALKA) in µg per litre as CaCO3 and pH. Ammonium (NH4N), nitrate (NO3N), soluble reactive phosphate (PO4P), total phosphorus (TOTP), dissolved reactive silicon expressed as SiO2 (SIO2) and phytoplankton chlorophyll a (TOCA) are all given in µg per litre. Water samples are based on a sample integrated from 0 to 5 m. Measurements are made from a boat at a marked location (buoy) at the deepest part of the lake. When it was not possible to visit the buoy, samples were taken from the shore, thus water samples were not integrated on these occasions, marked as Flag 2. All data are from January 2014 until the end of 2018. Unfortunately, due to funding shortages, the long-term monitoring of Bassenthwaite Lake ended early 2019.\n\nThis work was supported by the Natural Environment Research Council award number NE/R016429/1 as part of the UK-SCAPE programme delivering National Capability.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/R016429/1"],"identifier":"fe579fbf-e371-4320-8875-a8af8736f3e5","incomingCitationCount":0,"givenName":["H.","S.","H.T.","M.A.","M.M.","B.A.","J.","J.B.","E.B.","S.J.","S.C."],"familyName":["Feuchtmayr","Beith","Carter","Clarke","De Ville","Dodd","Fletcher","James","Mackay","Thackeray","Maberly"],"fullName":["Feuchtmayr, H.","Beith, S.","Carter, H.T.","Clarke, M.A.","De Ville, M.M.","Dodd, B.A.","Fletcher, J.","James, J.B.","Mackay, E.B.","Thackeray, S.J.","Maberly, S.C."],"keyword":["UK-SCAPE","Water quality","Environmental survey"],"keywordsProject":["UK-SCAPE"],"keywordsTheme":["Water quality","Environmental survey"],"licence":"Open government licence","lineage":"Measurements are made from a boat at a marked location (buoy) at the deepest part of the lake. When it was not possible to visit the buoy, samples were taken from the shore. Water samples are based on a sample integrated from 0 to 5 m. Samples were analysed in UKCEH laboratories.","locations":["POLYGON((-3.25 54.624, -3.25 54.68, -3.185 54.68, -3.185 54.624, -3.25 54.624))"],"orcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0002-3808-1534","https://orcid.org/0000-0002-8788-8449","https://orcid.org/0000-0003-3541-5903"],"organisation":["UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/fe579fbf-e371-4320-8875-a8af8736f3e5","10.5285/fe579fbf-e371-4320-8875-a8af8736f3e5"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a data from Bassenthwaite Lake, 2014 to 2018","topic":["0/Water quality/","0/Environmental survey/"],"version":1.0,"view":["public","margla"],"shortenedDescription":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling by the UK Centre for Ecology & Hydrology (UKCEH) at Bassenthwaite Lake in Cumbria,..."},{"publicationDate":"2025-07-11T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Center for Large Landscape Conservation","University of North Texas","University of Aberdeen","Eco2librium Company Ltd","Wildlife Research & Training Institute","Unaffiliated","Kenya Forest Service"],"authorGivenName":["J.M.","P.","R.K."," A.J.","E.S.","C.","J.M.J.","E.","A.","D.","L.","H.","G."],"authorFamilyName":["Bullock","Beier","Broughton","Gregory","Spence","Burkett","Travis","Amutabi","Analo","Atai","Espira","Kipleting","Juma","Lukaria","Makalasia","Malema","Wendot"],"authorFullName":["Bullock, J.M.","Beier, P.","Broughton, R.K.","Gregory, A.J.","Spence, E.S.","Burkett, C.","Travis, J.M.J.","Amutabi, C.","Analo, C.","Atai, E.","Espira, A.","Kipleting, D.","Juma, C.","Lukaria, L.","Makalasia, C.","Malema, H.","Wendot, G."],"authorOrcid":["https://orcid.org/0000-0003-0529-4020","https://orcid.org/0000-0002-4297-4343","https://orcid.org/0000-0002-6838-9628","https://orcid.org/0000-0003-1905-3236","https://orcid.org/0000-0003-1595-0167","https://orcid.org/0000-0002-5785-4272"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/02bv7qz69","https://ror.org/00v97ad02","https://ror.org/016476m91","https://ror.org/0526r9902"],"catalogue":"eidc","description":"This dataset contains information on the trap-setting operations and the number and species of animals captured during systematic sampling surveys in natural habitats of Kenya between 2021 and 2022. The trapping data include dates of setting, checking and removal at multiple locations. Trapping at each location typically involved 3-5 nights per trap line, but this could vary. The trap lines typically comprised 12 pairs of traps each set 10 metres apart along a transect line, with geographical coordinates for the centre of a pair of traps along the trap line. Animals were primarily captured for tissue collection for genetic analysis (not included in this dataset) to investigate the effectiveness of habitat corridors for promoting movement.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council","U.S. National Science Foundation (NSF)"],"grant":["NE/T006935/1"],"identifier":"de1d9de7-c0b9-4e53-b848-334bcf120d2c","incomingCitationCount":0,"givenName":["J.M.","P.","R.K."," A.J.","E.S.","C.","J.M.J.","E.","A.","D.","L.","H.","G."],"familyName":["Bullock","Beier","Broughton","Gregory","Spence","Burkett","Travis","Amutabi","Analo","Atai","Espira","Kipleting","Juma","Lukaria","Makalasia","Malema","Wendot"],"fullName":["Bullock, J.M.","Beier, P.","Broughton, R.K.","Gregory, A.J.","Spence, E.S.","Burkett, C.","Travis, J.M.J.","Amutabi, C.","Analo, C.","Atai, E.","Espira, A.","Kipleting, D.","Juma, C.","Lukaria, L.","Makalasia, C.","Malema, H.","Wendot, G."],"keyword":["Biodiversity","Environmental survey","carnivores","forest","animal corridor","habitat corridors","mustelid","rodent","Sherman traps","woodland ecosystem","woodland"],"keywordsTheme":["Biodiversity","Environmental survey"],"keywordsOther":["carnivores","forest","animal corridor","habitat corridors","mustelid","rodent","Sherman traps","woodland ecosystem","woodland"],"licence":"Open government licence","lineage":"Animals were captured during standardized trapping surveys with Sherman traps, and Tomahawk traps in systematic arrays. Trapping targeted small-medium sized rodents, carnivores and opossums. Captured animals were identified to species, marked individually, biometrics were recorded (ear size, hind foot and tail length), and tissue samples were collected, generally from the ear. The animals were then released alive. Trap and capture data are linked via a primary key field.\nAt each trap check, data from captured animals were recorded in the field on data sheets, and then later computerized by entering into spreadsheets. Data were checked against original field records for quality assurance and validation.\n","locations":["POLYGON((33.559 -4.912, 33.559 5.269, 42.084 5.269, 42.084 -4.912, 33.559 -4.912))"],"orcid":["https://orcid.org/0000-0003-0529-4020","https://orcid.org/0000-0002-4297-4343","https://orcid.org/0000-0002-6838-9628","https://orcid.org/0000-0003-1905-3236","https://orcid.org/0000-0003-1595-0167","https://orcid.org/0000-0002-5785-4272"],"organisation":["UK Centre for Ecology & Hydrology","Center for Large Landscape Conservation","University of North Texas","University of Aberdeen","Eco2librium Company Ltd","Wildlife Research & Training Institute","Unaffiliated","Kenya Forest Service","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/de1d9de7-c0b9-4e53-b848-334bcf120d2c"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology","Center for Large Landscape Conservation"],"ror":["https://ror.org/00pggkr55","https://ror.org/02bv7qz69","https://ror.org/00v97ad02","https://ror.org/016476m91","https://ror.org/0526r9902","https://ror.org/04xw4m193"],"state":"published","title":"Monitoring data from small mammal trapping in forest habitats in Kenya, 2021-2022","topic":["0/Biodiversity/","0/Environmental survey/"],"version":1.0,"view":["public","elsdhi"],"shortenedDescription":"This dataset contains information on the trap-setting operations and the number and species of animals captured during systematic sampling surveys in natural habitats of Kenya between 2021 and 2022. 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The biometric data (whole egg weight, length and breadth, etc) are recorded on a MSAccess form which uploads directly to an Oracle database. Chemistry batch files containing concentrations of the different contaminants in tissues and eggs are loaded directly into an Oracle database.","locations":["POLYGON((-8.648 49.864, -8.648 60.861, 1.768 60.861, 1.768 49.864, -8.648 49.864))"],"orcid":["https://orcid.org/0000-0003-3740-0019"],"organisation":["UK Centre for Ecology & Hydrology","Department of Environmental Chemistry, Institute of Environmental Diagnostics and Water Studies, CSIC","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/43487d30-ba23-424e-a2bb-d04dd121875c","10.5285/43487d30-ba23-424e-a2bb-d04dd121875c"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/056yktd04","https://ror.org/04xw4m193"],"state":"published","title":"Perfluorinated compounds (PFCs) in eggs of the northern gannet (Morus bassanus) from two UK colonies, 1977-2014","topic":["0/Pollution/","0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"Data comprise concentrations of Perfluorinated compounds in the eggs of the marine sentinel species the Northern gannet (Morus bassanus), from colonies in Ailsa Craig in the Irish Sea (eastern Atlantic), and Bass Rock in the North Sea, United Kingdom. The study reports..."},{"publicationDate":"2022-10-19T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","University of Liverpool","National Grid"],"authorGivenName":["C.J.","S.","J.R.","A.J.","D."],"authorFamilyName":["Feeney","Godfrey","Cooper","Plater","Dodds"],"authorFullName":["Feeney, C.J.","Godfrey, S.","Cooper, J.R.","Plater, A.J.","Dodds, D."],"authorOrcid":["https://orcid.org/0000-0003-2175-1842","https://orcid.org/0000-0001-7480-5758","https://orcid.org/0000-0003-4957-2774","https://orcid.org/0000-0001-7043-227X"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This dataset contains information about predicted future erosion hazards to electricity transmission towers at a site in the Mersey River valley. River channel change and floodplain erosion rates were simulated under 6 hypothetical flow scenarios, covering the years 2018 to 2050. These scenarios include: “baseline” where we assumed the 32 years of flow from 2018 to 2050 matched the preceding 32-year period; and “plus 10, 20, 30, 40 & 50%” where we assumed daily averaged flow magnitudes increased by 10, 20, 30, 40 or 50%, depending on the scenario. Simulations were run using the CAESAR-Lisflood landscape evolution model. Input files that were used to drive the simulations include a 15-metre resolution DEM covering a ~4.5 km long reach of river valley, and daily-averaged flow inputs (m3 s-1). Landscape changes over time were extracted at the locations of each electricity transmission tower, with the severity of erosion used to judge the relative risks of each tower from future climate change.\n\nThe work was supported by the Natural Environment Research Council (Grant NE/S01697X/1) as part of the project: ‘Erosion Hazards in River Catchments: Making Critical Infrastructure More Climate Resilient’.","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":[" NE/S01697X/1 NE/R016429/1 "],"identifier":"78bc21a9-39e0-4efc-992c-5587439fe6be","incomingCitationCount":1,"givenName":["C.J.","S.","J.R.","A.J.","D.","Christopher"],"familyName":["Feeney","Godfrey","Cooper","Plater","Dodds"],"fullName":["Feeney, C.J.","Godfrey, S.","Cooper, J.R.","Plater, A.J.","Dodds, D.","Feeney, C."],"keyword":["Environmental risk","CAESAR-Lisflood","erosion","hazard","climate change","river","floodplain","infrastructure","electricity"],"keywordsTheme":["Environmental risk"],"keywordsOther":["CAESAR-Lisflood","erosion","hazard","climate change","river","floodplain","infrastructure","electricity"],"licence":"Open government licence","lineage":"Historic river channel changes were quantified for the years 1976-2018 by digitising channel boundaries from old Ordnance Survey maps and aerial imagery. Floodplain erosion and deposition rates (m2 yr-1) were estimated by overlaying the digitised channel features to create a time-series of landscape evolution. The years 1976-2018 represent a combined overlapping record where we have available OS maps and aerial imagery, as well as continuous recorded daily-averaged flow data for the Ashton Weir (station no. 69007) from the National River Flow Archive. The CAESAR-Lisflood model was calibrated using this historic flow series and a modified version of a LiDAR DEM from the Environment Agency. Simulation results during calibration were compared against digitised historic channel changes, with the 2 best results chosen for simulation of future flow scenarios. A total of 12 simulations was run to determine which of 40 electricity transmission towers would be at greatest risk from river channel erosion. These 12 simulations consist of the 2 calibrated models × 6 hypothetical future flow scenarios.\n\nThe CAESAR-Lisflood model simulates processes using deterministic algorithms. This means that without changing inputs, the model can be run repeatedly and return an identical result. Input files necessary to run the CAESAR-Lisflood model are included in this dataset so that this repeatability can be independently verified. R code is also provided to allow the user to reproduce most of the analyses reported in the associated paper.\n\nRiver channel change is a “chaotic” process, which means prediction of its future dynamics is riddled with uncertainties. Added to this, our chosen flow scenarios are hypothetical, and constructed by multiplying the most recent historical 32-year flow record by 1-1.5 depending on the scenario. Thus, care should be taken when interpreting our results. We suggest that we can accurately pinpoint which towers are most at risk from future erosion, but not the exact timings of these risks.","locations":["POLYGON((-2.4 53.43, -2.4 53.46, -2.34 53.46, -2.34 53.43, -2.4 53.43))"],"orcid":["https://orcid.org/0000-0003-2175-1842","https://orcid.org/0000-0001-7480-5758","https://orcid.org/0000-0003-4957-2774","https://orcid.org/0000-0001-7043-227X"],"organisation":["UK Centre for Ecology & Hydrology","University of Liverpool","National Grid","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/78bc21a9-39e0-4efc-992c-5587439fe6be","10.5285/78bc21a9-39e0-4efc-992c-5587439fe6be"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","supplementalDescription":["If the user wishes to recreate the model outputs, they will need to use the CAESAR-Lisflood model, which is available from:\n\nWe would also recommend using version 4 of R to run any of the R scripts"],"title":" Predicted erosion hazards to electricity transmission towers in the Mersey River valley under hypothetical future flow scenarios, 2018-2050","topic":["0/Environmental risk/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains information about predicted future erosion hazards to electricity transmission towers at a site in the Mersey River valley. River channel change and floodplain erosion rates were simulated under 6 hypothetical flow scenarios, covering the years..."},{"publicationDate":"2020-03-27T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University"],"authorGivenName":["S.","W.","A."],"authorFamilyName":["Cavers","Wachowiak","Perry"],"authorFullName":["Cavers, S.","Wachowiak, W.","Perry, A."],"authorOrcid":["https://orcid.org/0000-0003-2139-9236","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0002-7889-7597"],"authorRor":["https://ror.org/00pggkr55","https://ror.org/04g6bbq64"],"catalogue":"eidc","description":"This dataset contains ~50,000 single nucleotide polymorphisms (SNPs, DNA mutations) for Scots pine (Pinus sylvestris) and closely related members of the Pinus mugo complex, which were selected for inclusion on a 50K SNP Axiom array","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"identifier":"cbaa464a-ac18-42bf-8518-c746d8d97270","incomingCitationCount":1,"givenName":["S.","W.","A.","Stephen"],"familyName":["Cavers","Wachowiak","Perry"],"fullName":["Cavers, S.","Wachowiak, W.","Perry, A."],"keyword":["Environmental survey","Micoarray","Speciation","Natural selection ","Divergence ","Polymorphism ","Genotyping "],"keywordsTheme":["Environmental survey"],"keywordsOther":["Micoarray","Speciation","Natural selection ","Divergence ","Polymorphism ","Genotyping "],"licence":"Open government licence","lineage":"The array comprised 49,829 SNPs from several sources, as follows. The majority (N = 49,052) were obtained from transcriptome sequencing of four pine species: Pinus sylvestris, P. mugo, P. uncinata and P. uliginosa (Wachowiak et al., 2015). These included SNPs which were common to all species and also SNPs fixed in one species and polymorphic within and among others. The set of SNPs identified by Wachowiak et al. (2015) was filtered by the array manufacturer (Thermo Fisher) based on p-convert values signifying the SNP array quality, and a list of recommended and non-recommended SNP probes (avoiding SNPs with polymorphisms within 35 bp) was provided to the authors. A further set of SNPs (N = 578) were included from candidate genes (N = 279), which had been resequenced in previous population genetic studies of the pine species (Kujala & Savolainen, 2012; Mosca, Eckert, Di Pierro, et al., 2012; Palmé, Wright, & Savolainen, 2008; Wachowiak, Balk, & Savolainen, 2009; Wachowiak, Zaborowska, et al., 2018). Variation in mitochondrial DNA (mtDNA) was targeted using a set of SNPs (N = 14) which had been discovered by Donnelly et al. (2017). A set of SNPs putatively associated with susceptibility to Dothistroma needle blight (discovered in Pinus radiata, ENA accession numbers ERS1034542-53) were also included (N = 185).\n","locations":["POLYGON((-14.932 34.883, -14.932 61.601, 17.984 61.601, 17.984 34.883, -14.932 34.883))"],"orcid":["https://orcid.org/0000-0003-2139-9236","https://orcid.org/0000-0003-2898-3523","https://orcid.org/0000-0002-7889-7597"],"organisation":["UK Centre for Ecology & Hydrology","Adam Mickiewicz University","NERC EDS Environmental Information Data Centre","NERC Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/cbaa464a-ac18-42bf-8518-c746d8d97270","10.5285/cbaa464a-ac18-42bf-8518-c746d8d97270"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04g6bbq64","https://ror.org/04xw4m193"],"state":"published","title":"Scots pine single nucleotide polymorphisms (SNP) for Axiom array","topic":["0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains ~50,000 single nucleotide polymorphisms (SNPs, DNA mutations) for Scots pine (Pinus sylvestris) and closely related members of the Pinus mugo complex, which were selected for inclusion on a 50K SNP Axiom array"},{"publicationDate":"2016-03-04T00:00:00.000+00:00","authorAffiliation":["Centre for Ecology & Hydrology"],"authorGivenName":["E.C.","H.","J.L.","A.J.","S.A.","M.","E."],"authorFamilyName":["Rowe","Toberman","Adams","Lawlor","Thacker","Patel","Tipping"],"authorFullName":["Rowe, E.C.","Toberman, H.","Adams, J.L.","Lawlor, A.J.","Thacker, S.A.","Patel, M.","Tipping, E."],"authorOrcid":["https://orcid.org/0000-0001-6618-6512"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"Data comprise bracken biomass, soil and bracken chemistry (for example mass, bulk density, pH, carbon, nitrogen and the concentration of a range of other elements) precipitation, percentage ground cover of plant species and site information. Samples were collected between 21st July and 6th August 2014 at 49 plots in the English lake district and Snowdonia in Wales. Plots were located in stands with minimum 80% bracken cover and which had not been trampled by grazing animals. The study was funded by the UK Natural Environment Research Council under the Macronutrient Cycling Research Programme, as part of the Long-Term, Large-Scale (LTLS) project (Grant no. NE/J011533/1), and by the University of Liverpool (Grant no. NE/J011630/1). ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/J011533/1"],"identifier":"5b89d8f3-86f0-431c-844f-eda5ddae9042","incomingCitationCount":1,"givenName":["Ed","E.C.","H.","J.L.","A.J.","S.A.","M.","E."],"familyName":["Rowe","Toberman","Adams","Lawlor","Thacker","Patel","Tipping"],"fullName":["Rowe, E.","Rowe, E.C.","Toberman, H.","Adams, J.L.","Lawlor, A.J.","Thacker, S.A.","Patel, M.","Tipping, E."],"keyword":["Snowdonia","Lake District","Environmental survey","Soil","macronutrient","micronutrient","productivity","NPP","limitation","potassium","molybdenum","stochiometry","Bracken","Pteridium","nitrogen","soil","phosphorus"],"keywordsPlace":["Snowdonia","Lake District"],"keywordsTheme":["Environmental survey","Soil"],"keywordsOther":["macronutrient","micronutrient","productivity","NPP","limitation","potassium","molybdenum","stochiometry","Bracken","Pteridium","nitrogen","soil","phosphorus"],"licence":"Open government licence","lineage":"References to accompany lineage are available from supporting information. Mean annual precipitation data were obtained for each location from the CEH-GEAR dataset, an interpolated grid based on a network of meteorological stations (Tanguy et al., 2014). The altitude of each location was determined in the field using a GPS device. Site-specific N deposition estimates were obtained from APIS (APIS, 2015). Plots of 1x 1 m were demarcated, and all plant species occurring in the plot were recorded. Bracken fronds that emerged from within the plot were cut at ground level, bulked and weighed. A subsample of approximately 500g was weighed, dried at 60°C to constant weight, and re-weighed to determine moisture content for calculating total dry bracken biomass. All other vegetation in the plot was cut at ground level and at the plot boundaries, and dried at 60°C to constant weight. A 25g subsample of dry bracken fronds was ground for chemical analysis. Carbon and N contents were determined by oxidative combustion followed by thermal conductivity detection using a Vario EL elemental analyser (Elementar Analysensysteme GmbH, Hanau, Germany). Subsamples were digested using a method based on EPA (2007) in a 3:1 mixture of hydrochloric acid and nitric acid in sealed Teflon vessels, heated to 175°C over a period of 7 minutes and held at 175°C for 4.5 minutes. After cooling, the vessel contents were filtered and diluted to volume. Concentrations of P, K, Ca and Mg were measured by Inductively Coupled Plasma Optical Emission Spectrometry using an Optima 7300DV analyser (Perkin Elmer, Waltham, Massachusetts USA).\n\nSoil was sampled from three places within the plot using a 5 cm diameter split-tube auger. Plant litter was removed, and the auger was inserted to 15 cm depth. In a few plots this was not possible due to the presence of stones, and instead holes were excavated to 15 cm depth and their dimensions recorded. The fresh sample was weighed, and a subsample removed and weighed. Moisture content was determined by measuring the weight of the subsample after drying for three days at 60 oC, and the organic C concentration was determined by measuring weight after ignition at 350 oC for three days. The total dry weight of soil was determined, and used to calculate bulk density on the basis of the total volume of the auger or excavated holes. The pH of fresh soil was measured in a slurry of 10 g soil in 25 mL deionised water. The remaining fresh soil sample was air-dried, and stones and roots not passing through a 2 mm sieve were removed. The soil was then ground, and subsamples were taken for chemical analysis. Concentrations of soil total C, N, P, K, Ca and Mg were determined using the same methods as for plant tissue analysis. Organic P was obtained as the difference between total P and inorganic P concentrations. A 0.5 g milled sub-sample was used for the extraction of inorganic P using 25 ml of 0.5 M sulphuric acid, which was shaken for 16 hours, centrifuged at 10 000 rpm for 30 minutes and filtered into 50 ml test tubes. The filtrate was analysed for total inorganic P using molybdate colorimetry with a Seal Analytical AQ2 discrete analyser. \n\nSoil total N/C ratio was used as an indicator of N availability. The other nutrient elements were expressed as stocks, since mass concentration may under-represent availability in dense mineral soils and element/C ratio may underrepresent availability in more organic soils (Rowe et al., 2012). Stocks (g m-2) in the top 15 cm of soil were calculated using the bulk density measurement. The stock of organic P, and total element stocks of K, Ca and Mg, were used as indicators of availability.\n\nSpecies occurrence was used to characterise environmental conditions on the basis of indicator scores (Diekmann, 2003). Environmental trait scores for European species were defined by Ellenberg et al. (1992) on axes corresponding to fertility ('Ellenberg N'), alkalinity ('Ellenberg R'), moisture ('Ellenberg F') and light availability ('Ellenberg L'). In the current study, plot-specific values on each of these axes were calculated as the mean values for the species present of indicator scores as recalculated for UK species by Hill et al. (2000). Cover-weighting was not applied, in part to prevent the scores for bracken itself dominating the mean scores, but also since basing indicator scores on presence-absence data reduces the effect of short-term environmental variation (Kafer and Witte, 2004).","locations":["POLYGON((-4.166 53.119, -4.166 54.662, -2.532 54.662, -2.532 53.119, -4.166 53.119))"],"orcid":["https://orcid.org/0000-0001-6618-6512"],"organisation":["UK Centre for Ecology & Hydrology","Centre for Ecology & Hydrology","NERC Environmental Information Data Centre","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/5b89d8f3-86f0-431c-844f-eda5ddae9042","10.5285/5b89d8f3-86f0-431c-844f-eda5ddae9042"],"resourceStatus":"Available","resourceType":"Dataset","rightsHolder":["UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Survey of bracken biomass, soil chemistry and other environmental factors in Snowdonia and the Lake District in 2014 [LTLS]","topic":["0/Environmental survey/","0/Soil/"],"version":1.0,"view":["public","jgar"],"shortenedDescription":"Data comprise bracken biomass, soil and bracken chemistry (for example mass, bulk density, pH, carbon, nitrogen and the concentration of a range of other elements) precipitation, percentage ground cover of plant species and site information. Samples were collected between..."},{"publicationDate":"2024-10-02T00:00:00.000+00:00","authorAffiliation":["Bangor University"],"authorGivenName":["J.","T. ","A. ","Z. "],"authorFamilyName":["Atkin-Willoughby","Peters","Smith","Wang"],"authorFullName":["Atkin-Willoughby, J.","Peters, T.","Smith, A.","Wang, Z."],"authorOrcid":["https://orcid.org/0000-0002-3192-2628"],"authorRor":["https://ror.org/006jb1a24"],"catalogue":"eidc","description":"This dataset contains daily germination rates of temperate tree species’ seed under elevated ozone fumigation in a closed chamber system. Daily counts of germinated sees were made. The seeds were exposed to an ambient and +60 parts per billion ozone treatment for approximately one month in the winter of 2024. Species tested were Betula pendula, Pinus sylvestris and Picea sitchensis. These data were collected to examine the possible effect of ozone on timing and percentage success of seed germination. ","documentType":"GEMINI_DOCUMENT","funder":["Natural Environment Research Council"],"grant":["NE/X018318/1"],"identifier":"e0226c12-f07a-48a6-8bef-9ae9e0a7d249","incomingCitationCount":0,"givenName":["J.","T. ","A. ","Z. ","Jack"],"familyName":["Atkin-Willoughby","Peters","Smith","Wang"],"fullName":["Atkin-Willoughby, J.","Peters, T.","Smith, A.","Wang, Z."],"keyword":["Environmental survey","tree species","Betula pendula","Pinus sylvestris","Picea sitchensis","ozone","tree","Scots pine","Sitka spruce","silver birch","germination"],"keywordsTheme":["Environmental survey"],"keywordsOther":["tree species","Betula pendula","Pinus sylvestris","Picea sitchensis","ozone","tree","Scots pine","Sitka spruce","silver birch","germination"],"licence":"Open government licence","lineage":"The closed chamber ozone fumigation system is located at the Climate Change Research Centre, Henfaes Farm, Abergwyngregyn. A minimum of 40 seeds were fumigated per chamber per species, maximum 80 seeds. Visual examination of seeds for radical emergence was used as the threshold for seed dormancy breaking/germination initiation, which was checked daily. New germinants for each day were recorded. Obvious errors in the data (decreases in germination total) were corrected prior to upload to EIDC. The data were collected by PhD candidate Jack Atkin-Willoughby from Bangor University and UK Centre for Ecology and Hydrology. ","orcid":["https://orcid.org/0000-0002-3192-2628"],"organisation":["Bangor University","UK Centre for Ecology & Hydrology","NERC EDS Environmental Information Data Centre"],"recordType":"Dataset","resourceIdentifier":["https://catalogue.ceh.ac.uk/id/e0226c12-f07a-48a6-8bef-9ae9e0a7d249","10.5285/e0226c12-f07a-48a6-8bef-9ae9e0a7d249"],"resourceStatus":"Embargoed","resourceType":"Non-geographic dataset","rightsHolder":["Bangor University","UK Centre for Ecology & Hydrology"],"ror":["https://ror.org/006jb1a24","https://ror.org/00pggkr55","https://ror.org/04xw4m193"],"state":"published","title":"Daily germination rates of temperate tree species’ seed under elevated ozone fumigation ","topic":["0/Environmental survey/"],"version":1.0,"view":["public","clwe"],"shortenedDescription":"This dataset contains daily germination rates of temperate tree species’ seed under elevated ozone fumigation in a closed chamber system. Daily counts of germinated sees were made. The seeds were exposed to an ambient and +60 parts per billion ozone treatment for approximately..."},{"publicationDate":"2025-05-12T00:00:00.000+00:00","authorAffiliation":["UK Centre for Ecology & Hydrology"],"authorGivenName":["Heidrun","B.A.","H.","A.G.","K.","E.B.","G.","S.J."],"authorFamilyName":["Feuchtmayr","Dodd","Guyatt","Hunt","Le Quesne","Mackay","McShane","Moorhouse","Rankin","Rhodes","Thackeray"],"authorFullName":["Feuchtmayr, H.","Dodd, B.A.","Guyatt, H.","Hunt, A.G.","Le Quesne, K.","Mackay, E.B.","McShane, G.","Moorhouse, H.","Rankin, G.","Rhodes, G.","Thackeray, S.J."],"authorOrcid":["https://orcid.org/0000-0002-2028-4843","https://orcid.org/0000-0001-7038-9881","https://orcid.org/0000-0003-0488-3843","https://orcid.org/0000-0003-3274-2706"],"authorRor":["https://ror.org/00pggkr55"],"catalogue":"eidc","description":"This is part of an ongoing long-term monitoring dataset of surface temperature, surface oxygen, water clarity, water chemistry and phytoplankton chlorophyll a from fortnightly sampling at Esthwaite Tarn in Cumbria, England. The data available to download comprise surface temperature (TEMP) in degree Celsius, surface oxygen saturation (OXYG) in % air-saturation, Secchi depth (SECC) in metres, alkalinity (ALKA) in µg per litre as CaCO3 and pH. Total ammoniacal nitrogen (NH4N), total oxidised nitrogen (TON), soluble reactive phosphate (PO4P), total phosphorus (TOTP), dissolved reactive silicon expressed as SiO2 (SIO2) and phytoplankton chlorophyll a (TOCA) are all given in µg per litre. Water samples are based on a sample integrated from 0 to 5 m. Water chemistry values below the detection limit, are indicated by a < sign in the column titled ‘sign(if