PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX dcat: <http://www.w3.org/ns/dcat#>
PREFIX dcmitype: <http://purl.org/dc/dcmitype/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX geo: <http://www.opengis.net/ont/geosparql#>
PREFIX vcard: <http://www.w3.org/2006/vcard/ns#>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX odrs: <http://schema.theodi.org/odrs#>
PREFIX sosa: <http://www.w3.org/ns/sosa/>
PREFIX sdo: <https://schema.org/>
PREFIX ef: <http://www.w3.org/2015/03/inspire/ef/>
PREFIX doo: <https://digital.ceh.ac.uk/ontology/doo/>
PREFIX adms: <http://www.w3.org/ns/adms#>
PREFIX : <https://catalogue.ceh.ac.uk/id/>
:3ae572f6-4862-47ae-b4a0-4b9c496b5b54
dcterms:title "Python code for building and training a generative adversarial network for demographic inferences from genomic data" ;
dcterms:identifier "https://catalogue.ceh.ac.uk/id/3ae572f6-4862-47ae-b4a0-4b9c496b5b54","https://doi.org/10.5285/3ae572f6-4862-47ae-b4a0-4b9c496b5b54" ;
dcterms:bibliographicCitation "Pui, C.S., Fumagalli, M., Mathieson, S. (2023). Python code for building and training a generative adversarial network for demographic inferences from genomic data. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/3ae572f6-4862-47ae-b4a0-4b9c496b5b54" ;
dcterms:description "A collection of python and bash scripts to implement, train and deploy a generative adversarial network for population genetic inferences. The networks have been tuned to be deployed to genomic data from Anopheles mosquitoes. However, the general framework can be applied to other species. It requires the input data to be in Variant Call Format (VCF) format and the simulations need to be in msprime format." ;
dcterms:provenance [
a dcterms:ProvenanceStatement ;
rdfs:label "The methodology can be applied to up to two populations at the same time. The code uses the keras python package and the scripts have been tested via simulations. Inferences were tested using simulations with known output, and the power to infer the ground truth was recovered. Simulations can be performed using msprime or SLiM."
] ;
dcat:contactPoint
<https://orcid.org/0000-0002-4084-2953> ;
dcterms:publisher
<https://ror.org/04xw4m193> ;
dcterms:subject
"generative adversarial network",
"population genetics",
"demographic inference" ;
prov:wasGeneratedBy
<https://gtr.ukri.org/projects?ref=NE/X009637/1> ;
a dcmitype:Software ;
dcterms:license <https://spdx.org/licenses/OGL-UK-3.0.ttl>
;
dcterms:accessRights <http://vocab.nerc.ac.uk/collection/N07/current/UNRS/> ;
dcterms:creator
<https://orcid.org/0009-0008-4956-1358>,
<https://orcid.org/0000-0002-4084-2953>,
<https://orcid.org/0000-0002-0484-0838> ;
dcterms:language <http://id.loc.gov/vocabulary/iso639-1/en> .
<https://orcid.org/0000-0002-4084-2953> a foaf:Person ;
foaf:name "Fumagalli, M." ;
foaf:familyName "Fumagalli" ;
foaf:givenName "M." ;
vcard:hasEmail "m.fumagalli@qmul.ac.uk" ;
foaf:member <https://ror.org/026zzn846> ;
.
<https://ror.org/04xw4m193> a foaf:Organization ;
foaf:name "NERC EDS Environmental Information Data Centre" ;
vcard:hasEmail "info@eidc.ac.uk" ;
foaf:member <https://ror.org/04xw4m193> ;
.
<https://orcid.org/0009-0008-4956-1358> a foaf:Person ;
foaf:name "Pui, C.S." ;
foaf:familyName "Pui" ;
foaf:givenName "C.S." ;
vcard:hasEmail "pui.siu@qmul.ac.uk" ;
foaf:member <https://ror.org/026zzn846> ;
.
<https://orcid.org/0000-0002-4084-2953> a foaf:Person ;
foaf:name "Fumagalli, M." ;
foaf:familyName "Fumagalli" ;
foaf:givenName "M." ;
vcard:hasEmail "m.fumagalli@qmul.ac.uk" ;
foaf:member <https://ror.org/026zzn846> ;
.
<https://orcid.org/0000-0002-0484-0838> a foaf:Person ;
foaf:name "Mathieson, S." ;
foaf:familyName "Mathieson" ;
foaf:givenName "S." ;
vcard:hasEmail "smathieson@haverford.edu" ;
foaf:member <https://ror.org/04fnrxr62> ;
.
<https://ror.org/026zzn846> a foaf:Organization ;
foaf:name "Queen Mary University of London" .
<https://ror.org/04fnrxr62> a foaf:Organization ;
foaf:name "Haverford College" .
<https://gtr.ukri.org/projects?ref=NE/X009637/1> a prov:Activity ; .