Comparative transcriptomics of a complex of four European pine species
type: Dataset
citation: Wachowiak, W., Trivedi, U., Telford, A., Cavers, S. (2014). Comparative transcriptomics of a complex of four European pine species. NERC Environmental Information Data Centre. (Dataset). https://doi.org/10.5285/b6900166-ded6-4f7a-8734-484b6f77b2f1
description: Data from whole transcriptome sequencing of the four European pine species - Pinus sylvestris (Scots pine), P. mugo (Dwarf mountain pine), P. uliginosa (Mountain pine) and P. uncinata (Peat-bog pine). Those data include 1) transcriptome sequence of a reference Scots pine sample generated using Illumina paired-end sequencing technology and 2) information about single nucleotide polymorphisms (SNPs) in 17 samples collected across the European range, compared to the reference Scots pine sample. These genomic resources were produced to advance the study of the genetic basis of adaptive variation and speciation in pines.
is accessible for free: true
date published: 2014-10-10
keywords: Europe
keywords: Evolutionary ecology
keywords: Pinus sylvestris
keywords: Pinus mugo
keywords: Pinus uncinata
keywords: Pinus uliginosa
creator: Wachowiak, W.
creator: Trivedi, U.
creator: Telford, A.
creator: Cavers, S.
temporal coverage: 2006-01-01/2008-12-31
spatial coverage: bbox0
license: Open Government Licence v3
distribution: distribution0
publisher: NERC EDS Environmental Information Data Centre
provider: NERC EDS Environmental Information Data Centre
included in data catalog: Environmental Information Data Centre

Evolutionary ecology
type: DefinedTerm

Pinus sylvestris
type: DefinedTerm
in defined term set: https://www.wikidata.org/

Pinus mugo
type: DefinedTerm
in defined term set: https://www.wikidata.org/

Pinus uncinata
type: DefinedTerm
in defined term set: https://www.wikidata.org/

Pinus uliginosa
type: DefinedTerm
in defined term set: https://www.wikidata.org/

s12864-015-1401-z
type: CreativeWork
citation: Wachowiak, W., Trivedi, U., Perry, A., & Cavers, S. (2015). Comparative transcriptomics of a complex of four European pine species. BMC Genomics, 16(1).

s12864-016-3079-2
type: CreativeWork
citation: Liu, J.-J., Schoettle, A. W., Sniezko, R. A., Sturrock, R. N., Zamany, A., Williams, H., … Kegley, A. (2016). Genetic mapping of Pinus flexilis major gene (Cr4) for resistance to white pine blister rust using transcriptome-based SNP genotyping. BMC Genomics, 17(1).

Environmental Information Data Centre
type: DataCatalog
alternate name: EIDC

NERC EDS Environmental Information Data Centre
type: Organization

Open Government Licence v3
type: CreativeWork
alternate name: OGL-UK-3.0

geoshape0
type: GeoShape
box: -5.5 40, 29.5 61.5

Wachowiak, W.
type: Person
family name: Wachowiak
given name: W.
affiliation: UK Centre for Ecology & Hydrology

Trivedi, U.
type: Person
family name: Trivedi
given name: U.
affiliation: The University of Edinburgh

Telford, A.
type: Person
family name: Telford
given name: A.
affiliation: UK Centre for Ecology & Hydrology

Cavers, S.
type: Person
family name: Cavers
given name: S.
affiliation: UK Centre for Ecology & Hydrology

distribution0
type: DataDownload
encoding format: application/zip

UK Centre for Ecology & Hydrology
type: Organization