{"accessLimitation":{"value":"noLimitations","availability":"Available","description":"Access to the resource is not subject to any access limitations and is available to all users without restriction.","uri":"http://vocab.nerc.ac.uk/collection/N07/current/UNRS/"},"authors":[{"familyName":"Raulo","givenName":"A.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"author","email":"aura.raulo@zoo.ox.ac.uk","nameIdentifier":"https://orcid.org/0000-0003-4860-7840","fullName":"Raulo, A."},{"familyName":"Allen","givenName":"B.E.","organisationName":"University of Liverpool","organisationIdentifier":"https://ror.org/04xs57h96","role":"author","email":"bryony.Allen@liverpool.ac.uk","nameIdentifier":"https://orcid.org/0000-0002-3811-8173","fullName":"Allen, B.E."},{"familyName":"Troitsky","givenName":"T.","organisationName":"University of Helsinki","organisationIdentifier":"https://ror.org/040af2s02","role":"author","email":"troitskytanya@gmail.com","nameIdentifier":"https://orcid.org/0000-0001-8394-6229","fullName":"Troitsky, T."},{"familyName":"Husby","givenName":"A.","organisationName":"Uppsala University","organisationIdentifier":"https://ror.org/048a87296","role":"author","email":"arild.husby@ebc.uu.se","nameIdentifier":"https://orcid.org/0000-0003-1911-8351","address":{"city":"Uppsala"},"fullName":"Husby, A."},{"familyName":"Firth","givenName":"J.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"author","nameIdentifier":"https://orcid.org/0000-0001-7183-4115","fullName":"Firth, J."},{"familyName":"Coulson","givenName":"T.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"author","email":"tim.coulson@zoo.ox.ac.uk","nameIdentifier":"https://orcid.org/0000-0001-9371-9003","fullName":"Coulson, T."},{"familyName":"Knowles","givenName":"S.C.L.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"author","email":"sarah.knowles@zoo.ox.ac.uk","nameIdentifier":"https://orcid.org/0000-0002-2368-4623","fullName":"Knowles, S.C.L."}],"availability":"Available","boundingBoxes":[{"westBoundLongitude":-0.66,"eastBoundLongitude":-0.633,"southBoundLatitude":51.398,"northBoundLatitude":51.422,"bounds":"{\"type\": \"Feature\",      \"properties\": {},      \"geometry\": {        \"type\": \"Polygon\",        \"coordinates\": [[[-0.66, 51.398], [-0.66, 51.422], [-0.633, 51.422], [-0.633, 51.398], [-0.66, 51.398]]]      }}","coordinates":"[[[-0.66, 51.398], [-0.66, 51.422], [-0.633, 51.422], [-0.633, 51.398], [-0.66, 51.398]]]"}],"citation":{"authors":["Raulo, A.","Allen, B.E.","Troitsky, T.","Husby, A.","Firth, J.","Coulson, T.","Knowles, S.C.L."],"bibtex":"https://catalogue.ceh.ac.uk/documents/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222/citation?format=bib","day":25,"doi":"10.5285/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222","month":11,"publisher":"NERC EDS Environmental Information Data Centre","resourceTypeGeneral":"dataset","ris":"https://catalogue.ceh.ac.uk/documents/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222/citation?format=ris","title":"Wild rodent trapping, tracking and sampling for genetics and gut microbiome, Silwood Park, Berkshire, November 2014 to November 2015","url":"https://doi.org/10.5285/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222","year":2022},"custodians":[{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"custodian","email":"info@eidc.ac.uk"}],"datasetReferenceDate":{"publicationDate":"2022-11-25"},"description":"This data set is a combination of trapping data, tracking data and data on the genetic relatedness and gut microbiome composition of wild rodents caught in 2.3 ha study site in Nash’s Copse, Silwood Park, from November 2014 to November 2015. As part of a longer-term capture-mark-recapture study, three species of rodents were trapped with Sherman live-traps fortnightly for 12 months: wood mouse (Apodemus sylvaticus), yellow-necked mouse (Apodemus flavicollis) and bank vole (Myodes glaerolus). Upon capture, they were measured, weighted, sexed, aged and a tissue sample and a faecal sample were collected from all mouse individuals for genetic and microbiome analyses. All rodents were released to their location of capture. First time each individual was captured, they were injected with a permanent subcutaneous identification  Radio-Frequency Identification(RFID)-tag (Passive Integrated Transponde-tag). The tagged rodents were subsequently tracked with a set of custom-made tracking devices (loggers). Loggers produced dense time-stamped occurrence data suitable for inferring spatio-temporal activity patterns of rodents, such as temporal niches, home ranges and social networks. Tissue samples were used to genotype the wood mouse population and bacterial DNA extracted from faecal samples were used to profile their gut microbiome composition.\n\nThis work was funded by a NERC independent Research Fellowship to Sarah Knowles (NE/L011867/1)","distributionFormats":[{"name":"Comma-separated values (CSV)","type":"text/csv","version":"unknown"}],"distributorContacts":[{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"distributor","email":"info@eidc.ac.uk"}],"funding":[{"funderName":"Natural Environment Research Council","funderIdentifier":"https://ror.org/02b5d8509","awardNumber":"NE/L011867/1","orcid":false,"ror":true}],"id":"c67fde7f-a1c8-4cb4-a76e-0c6d21c82222","incomingCitationCount":1,"incomingCitations":[{"description":"Raulo, A., Allen, B. E., Troitsky, T., Husby, A., Firth, J. A., Coulson, T., & Knowles, S. C. (2021). Social networks strongly predict the gut microbiota of wild mice. The ISME journal, 15(9), 2601-2613.","url":"https://doi.org/10.1038/s41396-021-00949-3"}],"infoLinks":[{"url":"https://data-package.ceh.ac.uk/sd/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222.zip","name":"Supporting information","description":"Supporting information available to assist in re-use of this dataset","function":"information","type":"OTHER"}],"inspireThemes":[{"theme":"Environmental Monitoring Facilities","uri":"http://inspire.ec.europa.eu/theme/ef"}],"keywordsOther":[{"value":"Microbiome"},{"value":"microbiota"},{"value":"gut microbiome"},{"value":"trapping"},{"value":"Sherman"},{"value":"mouse"},{"value":"wood mouse"},{"value":"bank vole"},{"value":"yellow-necked mouse"},{"value":"Apodemus"},{"value":"Myodes"},{"value":"RFID-tracking"},{"value":"social network analysis"},{"value":"home range analysis"},{"value":"microsatellites"},{"value":"kinship"},{"value":"pedigree"},{"value":"trapping","uri":"http://www.eionet.europa.eu/gemet/concept/8655"},{"value":"animal genetics","uri":"http://www.eionet.europa.eu/gemet/concept/425"},{"value":"rodent","uri":"http://www.eionet.europa.eu/gemet/concept/7306"}],"licences":[{"value":"This resource is available under the terms of the Open Government Licence","code":"license","uri":"https://eidc.ac.uk/licences/ogl/plain"}],"lineage":"Wild rodents were trapped fortnightly, tagged and continuously monitored with tracking technology for one year.  This is a natural rodent population and no experimental manipulations were made. Upon capture, faecal samples were collected from the rodents and a piece of ear tissue was collected upon first capture of each individual. Tissue samples were stored in ethanol in -20 C and faecal samples were stored without buffer in -80 C for 3 years. In 2017 DNA was extracted from the faecal samples of wood mice and their gut microbiome was characterised from this by amplification and sequencing of the V3 region of bacterial 16S rRNA marker gene. In 2018 the wood mouse population was genotyped and their pedigree reconstructed from ear tissue samples using 11 microsatellite markers. Details of the data and the cleaning process can be found from the supporting documentation.","metadataDate":"2026-06-29T16:52:13","notGEMINI":false,"onlineResources":[{"url":"https://data-package.ceh.ac.uk/data/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222","name":"Download the data","description":"Download a copy of this data","function":"download","type":"OTHER"},{"url":"https://data-package.ceh.ac.uk/sd/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222.zip","name":"Supporting information","description":"Supporting information available to assist in re-use of this dataset","function":"information","type":"OTHER"}],"pointsOfContact":[{"familyName":"Raulo","givenName":"A.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"pointOfContact","email":"aura.raulo@zoo.ox.ac.uk","nameIdentifier":"https://orcid.org/0000-0003-4860-7840","fullName":"Raulo, A.","pointOfContact":"University of Oxford"}],"publicationDate":"2022-11-25T00:00:00.000Z","publishers":[{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"publisher","email":"info@eidc.ac.uk"}],"resourceIdentifiers":[{"code":"https://catalogue.ceh.ac.uk/id/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222"},{"code":"10.5285/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222","codeSpace":"doi"}],"resourceType":{"value":"dataset"},"responsibleParties":[{"familyName":"Raulo","givenName":"A.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"author","email":"aura.raulo@zoo.ox.ac.uk","nameIdentifier":"https://orcid.org/0000-0003-4860-7840","fullName":"Raulo, A."},{"familyName":"Allen","givenName":"B.E.","organisationName":"University of Liverpool","organisationIdentifier":"https://ror.org/04xs57h96","role":"author","email":"bryony.Allen@liverpool.ac.uk","nameIdentifier":"https://orcid.org/0000-0002-3811-8173","fullName":"Allen, B.E."},{"familyName":"Troitsky","givenName":"T.","organisationName":"University of Helsinki","organisationIdentifier":"https://ror.org/040af2s02","role":"author","email":"troitskytanya@gmail.com","nameIdentifier":"https://orcid.org/0000-0001-8394-6229","fullName":"Troitsky, T."},{"familyName":"Husby","givenName":"A.","organisationName":"Uppsala University","organisationIdentifier":"https://ror.org/048a87296","role":"author","email":"arild.husby@ebc.uu.se","nameIdentifier":"https://orcid.org/0000-0003-1911-8351","address":{"city":"Uppsala"},"fullName":"Husby, A."},{"familyName":"Firth","givenName":"J.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"author","nameIdentifier":"https://orcid.org/0000-0001-7183-4115","fullName":"Firth, J."},{"familyName":"Coulson","givenName":"T.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"author","email":"tim.coulson@zoo.ox.ac.uk","nameIdentifier":"https://orcid.org/0000-0001-9371-9003","fullName":"Coulson, T."},{"familyName":"Knowles","givenName":"S.C.L.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"author","email":"sarah.knowles@zoo.ox.ac.uk","nameIdentifier":"https://orcid.org/0000-0002-2368-4623","fullName":"Knowles, S.C.L."},{"familyName":"Raulo","givenName":"A.","organisationName":"University of Oxford","organisationIdentifier":"https://ror.org/052gg0110","role":"pointOfContact","email":"aura.raulo@zoo.ox.ac.uk","nameIdentifier":"https://orcid.org/0000-0003-4860-7840","fullName":"Raulo, A.","pointOfContact":"University of Oxford"},{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"custodian","email":"info@eidc.ac.uk"},{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"publisher","email":"info@eidc.ac.uk"},{"organisationName":"Imperial College London","organisationIdentifier":"https://ror.org/041kmwe10","role":"rightsHolder","email":"aura.raulo@zoo.ox.ac.uk"}],"rightsHolders":[{"organisationName":"Imperial College London","organisationIdentifier":"https://ror.org/041kmwe10","role":"rightsHolder","email":"aura.raulo@zoo.ox.ac.uk"}],"spatialReferenceSystems":[{"code":"http://www.opengis.net/def/crs/EPSG/0/27700","title":"OSGB 1936 / British National Grid"}],"spatialRepresentationTypes":["textTable"],"temporalExtents":[{"begin":"2014-11-01","end":"2015-11-30"}],"title":"Wild rodent trapping, tracking and sampling for genetics and gut microbiome, Silwood Park, Berkshire, November 2014 to November 2015","topicCategories":[{"value":"biota","uri":"http://inspire.ec.europa.eu/metadata-codelist/TopicCategory/biota"}],"type":"dataset","uri":"https://catalogue.ceh.ac.uk/id/c67fde7f-a1c8-4cb4-a76e-0c6d21c82222","useConstraints":[{"value":"This resource is available under the terms of the Open Government Licence","code":"license","uri":"https://eidc.ac.uk/licences/ogl/plain"}]}