{"accessLimitation":{"value":"noLimitations","availability":"Available","description":"Access to the resource is not subject to any access limitations and is available to all users without restriction.","uri":"http://vocab.nerc.ac.uk/collection/N07/current/UNRS/"},"authors":[{"familyName":"Cavers","givenName":"S.","organisationName":"UK Centre for Ecology & Hydrology","organisationIdentifier":"https://ror.org/00pggkr55","role":"author","email":"enquiries@ceh.ac.uk","nameIdentifier":"https://orcid.org/0000-0003-2139-9236","fullName":"Cavers, S."},{"familyName":"Wachowiak","givenName":"W.","organisationName":"Adam Mickiewicz University","organisationIdentifier":"https://ror.org/04g6bbq64","role":"author","email":"witwac@amu.edu.pl","nameIdentifier":"https://orcid.org/0000-0003-2898-3523","address":{"country":"Poland"},"fullName":"Wachowiak, W."},{"familyName":"Perry","givenName":"A.","organisationName":"UK Centre for Ecology & Hydrology","organisationIdentifier":"https://ror.org/00pggkr55","role":"author","email":"enquiries@ceh.ac.uk","nameIdentifier":"https://orcid.org/0000-0002-7889-7597","fullName":"Perry, A."}],"availability":"Available","boundingBoxes":[{"westBoundLongitude":-14.932,"eastBoundLongitude":17.984,"southBoundLatitude":34.883,"northBoundLatitude":61.601,"bounds":"{\"type\": \"Feature\",      \"properties\": {},      \"geometry\": {        \"type\": \"Polygon\",        \"coordinates\": [[[-14.932, 34.883], [-14.932, 61.601], [17.984, 61.601], [17.984, 34.883], [-14.932, 34.883]]]      }}","coordinates":"[[[-14.932, 34.883], [-14.932, 61.601], [17.984, 61.601], [17.984, 34.883], [-14.932, 34.883]]]"}],"citation":{"authors":["Cavers, S.","Wachowiak, W.","Perry, A."],"bibtex":"https://catalogue.ceh.ac.uk/documents/cbaa464a-ac18-42bf-8518-c746d8d97270/citation?format=bib","day":27,"doi":"10.5285/cbaa464a-ac18-42bf-8518-c746d8d97270","month":3,"publisher":"NERC Environmental Information Data Centre","resourceTypeGeneral":"dataset","ris":"https://catalogue.ceh.ac.uk/documents/cbaa464a-ac18-42bf-8518-c746d8d97270/citation?format=ris","title":"Scots pine single nucleotide polymorphisms (SNP) for Axiom array","url":"https://doi.org/10.5285/cbaa464a-ac18-42bf-8518-c746d8d97270","year":2020},"custodians":[{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"custodian","email":"info@eidc.ac.uk"}],"datasetReferenceDate":{"publicationDate":"2020-03-27","releasedDate":"2020-03-31"},"description":"This dataset contains  ~50,000 single nucleotide polymorphisms (SNPs, DNA mutations) for Scots pine (Pinus sylvestris) and closely related members of the Pinus mugo complex, which were selected for inclusion on a 50K SNP Axiom array","distributionFormats":[{"name":"Plain text","type":"text/plain","version":"unknown"}],"distributorContacts":[{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"distributor","email":"info@eidc.ac.uk"}],"funding":[{"funderName":"Natural Environment Research Council","funderIdentifier":"https://ror.org/02b5d8509","orcid":false,"ror":true}],"id":"cbaa464a-ac18-42bf-8518-c746d8d97270","incomingCitationCount":1,"incomingCitations":[{"description":"Perry, A., Wachowiak, W., Downing, A., Talbot, R., & Cavers, S. (2020). Development of a single nucleotide polymorphism array for population genomic studies in four European pine species. Molecular Ecology Resources, 20(6), 1697–1705.","url":"https://doi.org/10.1111/1755-0998.13223"}],"infoLinks":[{"url":"https://data-package.ceh.ac.uk/sd/cbaa464a-ac18-42bf-8518-c746d8d97270.zip","name":"Supporting information","description":"Supporting information available to assist in re-use of this dataset","function":"information","type":"OTHER"}],"inspireThemes":[{"theme":"Environmental Monitoring Facilities","uri":"http://inspire.ec.europa.eu/theme/ef"}],"keywordsOther":[{"value":"Micoarray"},{"value":"Speciation"},{"value":"Natural selection "},{"value":"Divergence "},{"value":"Polymorphism "},{"value":"Genotyping "}],"keywordsTheme":[{"value":"Environmental survey","uri":"http://onto.nerc.ac.uk/CEHMD/topic/7"}],"licences":[{"value":"This resource is available under the terms of the Open Government Licence","code":"license","uri":"https://eidc.ac.uk/licences/ogl/plain"}],"lineage":"The array comprised 49,829 SNPs from several sources, as follows. The majority (N = 49,052) were obtained from transcriptome sequencing of four pine species: Pinus sylvestris, P. mugo, P. uncinata and P. uliginosa (Wachowiak et al., 2015). These included SNPs which were common to all species and also SNPs fixed in one species and polymorphic within and among others. The set of SNPs identified by Wachowiak et al. (2015) was filtered by the array manufacturer (Thermo Fisher) based on p-convert values signifying the SNP array quality, and a list of recommended and non-recommended SNP probes (avoiding SNPs with polymorphisms within 35 bp) was provided to the authors. A further set of SNPs (N = 578) were included from candidate genes (N = 279), which had been resequenced in previous population genetic studies of the pine species (Kujala & Savolainen, 2012; Mosca, Eckert, Di Pierro, et al., 2012; Palmé, Wright, & Savolainen, 2008; Wachowiak, Balk, & Savolainen, 2009; Wachowiak, Zaborowska, et al., 2018). Variation in mitochondrial DNA (mtDNA) was targeted using a set of SNPs (N = 14) which had been discovered by Donnelly et al. (2017). A set of SNPs putatively associated with susceptibility to Dothistroma needle blight (discovered in Pinus radiata, ENA accession numbers ERS1034542-53) were also included (N = 185).\n","metadataDate":"2026-06-29T16:13:56","notGEMINI":false,"onlineResources":[{"url":"https://data-package.ceh.ac.uk/data/cbaa464a-ac18-42bf-8518-c746d8d97270","name":"Download the data","description":"Download a copy of this data","function":"download","type":"OTHER"},{"url":"https://data-package.ceh.ac.uk/sd/cbaa464a-ac18-42bf-8518-c746d8d97270.zip","name":"Supporting information","description":"Supporting information available to assist in re-use of this dataset","function":"information","type":"OTHER"}],"pointsOfContact":[{"honorificPrefix":"Dr","familyName":"Cavers","givenName":"Stephen","organisationName":"UK Centre for Ecology & Hydrology","organisationIdentifier":"https://ror.org/00pggkr55","role":"pointOfContact","email":"enquiries@ceh.ac.uk","address":{"deliveryPoint":"Bush Estate","city":"Penicuik","administrativeArea":"Midlothian","postalCode":"EH26 0QB","country":"United Kingdom"},"fullName":"Cavers, S.","pointOfContact":"UK Centre for Ecology & Hydrology"}],"publicationDate":"2020-03-27T00:00:00.000Z","publishers":[{"organisationName":"NERC Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"publisher","email":"info@eidc.ac.uk"}],"resourceIdentifiers":[{"code":"https://catalogue.ceh.ac.uk/id/cbaa464a-ac18-42bf-8518-c746d8d97270"},{"code":"10.5285/cbaa464a-ac18-42bf-8518-c746d8d97270","codeSpace":"doi"}],"resourceType":{"value":"dataset"},"responsibleParties":[{"familyName":"Cavers","givenName":"S.","organisationName":"UK Centre for Ecology & Hydrology","organisationIdentifier":"https://ror.org/00pggkr55","role":"author","email":"enquiries@ceh.ac.uk","nameIdentifier":"https://orcid.org/0000-0003-2139-9236","fullName":"Cavers, S."},{"familyName":"Wachowiak","givenName":"W.","organisationName":"Adam Mickiewicz University","organisationIdentifier":"https://ror.org/04g6bbq64","role":"author","email":"witwac@amu.edu.pl","nameIdentifier":"https://orcid.org/0000-0003-2898-3523","address":{"country":"Poland"},"fullName":"Wachowiak, W."},{"familyName":"Perry","givenName":"A.","organisationName":"UK Centre for Ecology & Hydrology","organisationIdentifier":"https://ror.org/00pggkr55","role":"author","email":"enquiries@ceh.ac.uk","nameIdentifier":"https://orcid.org/0000-0002-7889-7597","fullName":"Perry, A."},{"honorificPrefix":"Dr","familyName":"Cavers","givenName":"Stephen","organisationName":"UK Centre for Ecology & Hydrology","organisationIdentifier":"https://ror.org/00pggkr55","role":"pointOfContact","email":"enquiries@ceh.ac.uk","address":{"deliveryPoint":"Bush Estate","city":"Penicuik","administrativeArea":"Midlothian","postalCode":"EH26 0QB","country":"United Kingdom"},"fullName":"Cavers, S.","pointOfContact":"UK Centre for Ecology & Hydrology"},{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"custodian","email":"info@eidc.ac.uk"},{"organisationName":"NERC Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"publisher","email":"info@eidc.ac.uk"},{"organisationName":"UK Centre for Ecology & Hydrology","organisationIdentifier":"https://ror.org/00pggkr55","role":"rightsHolder","email":"enquiries@ceh.ac.uk"}],"rightsHolders":[{"organisationName":"UK Centre for Ecology & Hydrology","organisationIdentifier":"https://ror.org/00pggkr55","role":"rightsHolder","email":"enquiries@ceh.ac.uk"}],"spatialReferenceSystems":[{"code":"http://www.opengis.net/def/crs/EPSG/0/4326","title":"WGS 84"}],"spatialRepresentationTypes":["textTable"],"spatialResolutions":[{"distance":"10000","uom":"urn:ogc:def:uom:EPSG::9001"}],"title":"Scots pine single nucleotide polymorphisms (SNP) for Axiom array","topicCategories":[{"value":"biota","uri":"http://inspire.ec.europa.eu/metadata-codelist/TopicCategory/biota"}],"topics":["http://onto.nerc.ac.uk/CEHMD/topic/7"],"type":"dataset","uri":"https://catalogue.ceh.ac.uk/id/cbaa464a-ac18-42bf-8518-c746d8d97270","useConstraints":[{"value":"This resource is available under the terms of the Open Government Licence","code":"license","uri":"https://eidc.ac.uk/licences/ogl/plain"}]}