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The code produces Markov chain Monte Carlo samples from a model fitted to individual-level badger data from Woodchester Park. The badger data came from and can be requested from the Animal and Plant Health Agency. Example outputs are provided in the Supporting Information. This code was developed as part of a Natural Environment Research Council funded grant (number NE/V000616/1).","distributionFormats":[{"name":"Plain text","type":"text/plain","version":"unknown"}],"distributorContacts":[{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"distributor","email":"info@eidc.ac.uk"}],"funding":[{"funderName":"Natural Environment Research Council","funderIdentifier":"https://ror.org/02b5d8509","awardNumber":"NE/V000616/1","orcid":false,"ror":true}],"id":"fe0f6bd7-ffd2-4e21-8c84-493cf4f3080d","incomingCitationCount":0,"infoLinks":[{"url":"https://data-package.ceh.ac.uk/sd/fe0f6bd7-ffd2-4e21-8c84-493cf4f3080d.zip","name":"Supporting information","description":"Supporting information available to assist in re-use of this dataset","function":"information","type":"OTHER"}],"inspireThemes":[{"theme":"Environmental Monitoring Facilities","uri":"http://inspire.ec.europa.eu/theme/ef"}],"keywordsOther":[{"value":"Bovine tuberculosis"},{"value":"badgers"},{"value":"individual forward filtering backward sampling algorithm"}],"keywordsPlace":[{"value":"Woodchester Park"}],"keywordsTheme":[{"value":"Animal behaviour","uri":"http://onto.nerc.ac.uk/CEHMD/topic/20"}],"licences":[{"value":"This resource is made available under the terms of the GPL-3.0 Licence","code":"license","uri":"https://eidc.ac.uk/licences/gpl-3.0/plain"}],"lineage":"The code was developed and tested in R over a two-year project. Careful checks on the fitted model outputs against the observed data were done in order to assess the efficacy of the code and the models developed. These are all shown in the Supporting Information.","metadataDate":"2026-06-27T13:20:14","notGEMINI":false,"onlineResources":[{"url":"https://data-package.ceh.ac.uk/data/fe0f6bd7-ffd2-4e21-8c84-493cf4f3080d","name":"Download the data","description":"Download a copy of this data","function":"download","type":"OTHER"},{"url":"https://data-package.ceh.ac.uk/sd/fe0f6bd7-ffd2-4e21-8c84-493cf4f3080d.zip","name":"Supporting information","description":"Supporting information available to assist in re-use of this dataset","function":"information","type":"OTHER"}],"pointsOfContact":[{"familyName":"McKinley","givenName":"T.J.","organisationName":"University of Exeter","role":"pointOfContact","email":"t.mckinley@exeter.ac.uk","fullName":"McKinley, T.J.","pointOfContact":"University of Exeter"}],"publicationDate":"2024-03-25T00:00:00.000Z","publishers":[{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"publisher","email":"info@eidc.ac.uk"}],"resourceIdentifiers":[{"code":"https://catalogue.ceh.ac.uk/id/fe0f6bd7-ffd2-4e21-8c84-493cf4f3080d"},{"code":"10.5285/fe0f6bd7-ffd2-4e21-8c84-493cf4f3080d","codeSpace":"doi"}],"resourceType":{"value":"model"},"responsibleParties":[{"familyName":"McKinley","givenName":"T.J.","organisationName":"University of Exeter","role":"pointOfContact","email":"t.mckinley@exeter.ac.uk","fullName":"McKinley, T.J.","pointOfContact":"University of Exeter"},{"familyName":"Konzen","givenName":"E.","organisationName":"University of Warwick","role":"author","email":"Evandro.Konzen@warwick.ac.uk","fullName":"Konzen, E."},{"familyName":"Delahay","givenName":"R.J.","organisationName":"Animal and Plant Health Agency / University of Exeter","role":"author","email":"Dez.Delahay@apha.gov.uk","fullName":"Delahay, R.J."},{"familyName":"Hodgson","givenName":"D.J.","organisationName":"University of Exeter","role":"author","email":"d.j.hodgson@exeter.ac.uk","fullName":"Hodgson, D.J."},{"familyName":"McDonald","givenName":"R.A.","organisationName":"University of Exeter","role":"author","email":"r.mcdonald@exeter.ac.uk","fullName":"McDonald, R.A."},{"familyName":"Brooks Pollock","givenName":"E.","organisationName":"University of Bristol","role":"author","email":"ellen.brooks-pollock@bristol.ac.uk","fullName":"Brooks Pollock, E."},{"familyName":"Spencer","givenName":"S.","organisationName":"University of Warwick","role":"author","email":"S.E.F.Spencer@warwick.ac.uk","fullName":"Spencer, S."},{"familyName":"McKinley","givenName":"T.J.","organisationName":"University of Exeter","role":"author","email":"t.mckinley@exeter.ac.uk","fullName":"McKinley, T.J."},{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"custodian","email":"info@eidc.ac.uk"},{"organisationName":"NERC EDS Environmental Information Data Centre","organisationIdentifier":"https://ror.org/04xw4m193","role":"publisher","email":"info@eidc.ac.uk"},{"organisationName":"University of Exeter","role":"rightsHolder"}],"rightsHolders":[{"organisationName":"University of Exeter","role":"rightsHolder"}],"supplemental":[{"description":"Detecting superspreaders in wildlife reservoirs of disease.\nEvandro Konzen, Richard J. 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