Scott, T.W.
Code for generating long-term equilibrium results for a range of parasite virulence and parasite evolutionary lag values, and dynamical results for specific parameter values
Cite this dataset as:
Scott, T.W. (2023). Code for generating long-term equilibrium results for a range of parasite virulence and parasite evolutionary lag values, and dynamical results for specific parameter values. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/0b78e33c-1f81-4125-9558-c354292bda92
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This dataset is available under the terms of the Open Government Licence
https://doi.org/10.5285/0b78e33c-1f81-4125-9558-c354292bda92
This code contains scripts for generating data (specifically, these scripts numerically implement our mathematical model).
There are three data generating scripts: "Script_for_generating_parameter_sweep_data.m", "Script_for_generating_single_trial_data.m", "Script_for_generating_initial_genotype_frequencies.m". Running the "Script_for_generating_parameter_sweep_data.m" script will generate long-term (equilibrium) results for a range of d (parasite virulence) and lag (parasite evolutionary lag) values, and save these results in matrices. Running the "Script_for_generating_single_trial_data.m" script will generate over-time (dynamical) results for a specific set of parameter values. Both of these scripts call the "Script_for_generating_initial_genotype_frequencies.m" in order to generate the initial genotype frequencies that start off each run.
There are three data generating scripts: "Script_for_generating_parameter_sweep_data.m", "Script_for_generating_single_trial_data.m", "Script_for_generating_initial_genotype_frequencies.m". Running the "Script_for_generating_parameter_sweep_data.m" script will generate long-term (equilibrium) results for a range of d (parasite virulence) and lag (parasite evolutionary lag) values, and save these results in matrices. Running the "Script_for_generating_single_trial_data.m" script will generate over-time (dynamical) results for a specific set of parameter values. Both of these scripts call the "Script_for_generating_initial_genotype_frequencies.m" in order to generate the initial genotype frequencies that start off each run.
Publication date: 2023-12-12
View numbers valid from 12 December 2023 Download numbers valid from 20 June 2024 (information prior to this was not collected)
Formats
M-file, Comma-separated values (CSV)
Provenance & quality
This came into existence though the process of writing code for MATLAB, to numerically solve equations in the paper "Host-parasite coevolution and the stability of genetic kin recognition".
Licensing and constraints
This dataset is available under the terms of the Open Government Licence
Cite this dataset as:
Scott, T.W. (2023). Code for generating long-term equilibrium results for a range of parasite virulence and parasite evolutionary lag values, and dynamical results for specific parameter values. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/0b78e33c-1f81-4125-9558-c354292bda92
Correspondence/contact details
Author
Other contacts
Rights holder
University of Oxford
Custodian
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk
Publisher
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk