Part of UKCEH UKCEH logo
UKCEH website
Griffiths, R.I.; Puissant, J.; Goodall, T.I.

Standardised counts of bacteria, fungi and micro eukaryotes abundances across geo-linked sampling locations on grassland, UK (2016)

Download/Access
PLEASE NOTE: By accessing or using this dataset, you agree to the terms of the relevant licence agreement(s). You will ensure that this dataset is cited in any publication that describes research in which the data have been used.

This dataset is available under the terms of the Open Government Licence

Download the data
https://doi.org/10.5285/11bc98b8-5f2b-4a25-804c-16010052cdb7
The data consist of standardised counts of taxon abundances (bacteria, fungi and micro eukaryotes) from soil samples collected from paired intensive and extensive grassland systems, including low and high pH parent soils, from 32 sites across the United Kingdom. The samples were collected during winter and spring 2015-2016 from sites across the UK. DNA were extracted and taxonomic marker genes assessed using high-throughput DNA sequencing techniques to yield information about the genetic diversity and abundance of the microorganisms therein.

The data were collected to help understand soil functional change in a variety of management and climatic scenarios as part of NERC U-GRASS (Understanding and enhancing soil ecosystem services and resilience in UK grass and croplands) award (NERC Reference NE/M017125/1) part of the NERC Soil Security Programme.
Publication date: 2019-09-11
40 downloads *
844 views *

More information

View numbers valid from 01 June 2023 Download numbers valid from 20 June 2024 (information prior to this was not collected)

Format

Comma-separated values (CSV)

Spatial information

Study area
Spatial representation type
Tabular (text)
Spatial reference system
WGS 84

Temporal information

Temporal extent
2015-06-15    to    2018-10-30

Provenance & quality

Soil samples were collected from 32 grassland sites across the United Kingdom. Total soil DNA was extracted from field moist soil. Extracted DNA was subject to taxonomic amplicon sequencing and bioinformatics processing at the facilities of the Molecular Ecology Group, Centre for Ecology & Hydrology, Wallingford. The compiled data set was exported as a comma separated value file for deposition into the EIDC.

Licensing and constraints

This dataset is available under the terms of the Open Government Licence

Cite this dataset as:
Griffiths, R.I.; Puissant, J.; Goodall, T.I. (2019). Standardised counts of bacteria, fungi and micro eukaryotes abundances across geo-linked sampling locations on grassland, UK (2016). NERC Environmental Information Data Centre. https://doi.org/10.5285/11bc98b8-5f2b-4a25-804c-16010052cdb7

© UK Centre for Ecology & Hydrology

Correspondence/contact details

Tim Goodall
UK Centre for Ecology & Hydrology
Environment Centre Wales, Deiniol Road
Bangor
Gwynedd
LL57 2UW
UNITED KINGDOM
 enquiries@ceh.ac.uk

Authors

Griffiths, R.I.
Centre for Ecology & Hydrology
Puissant, J.
Centre for Ecology & Hydrology
Goodall, T.I.
Centre for Ecology & Hydrology

Other contacts

Rights holder
UK Centre for Ecology & Hydrology
Custodian
NERC EDS Environmental Information Data Centre
 info@eidc.ac.uk
Publisher
NERC Environmental Information Data Centre
 info@eidc.ac.uk

Additional metadata

Topic categories
biota
INSPIRE themes
Environmental Monitoring Facilities
Soil
Keywords
16S , 18S , bacteria , Biodiversity , DNA sequencing , fungus , genetic diversity , internal transcribed spacer , ITS , micro eukaryotes , paired , ribosomal , soil , Soil , Soil
Funding
Natural Environment Research Council Award: NE/M017125/1
Last updated
27 February 2024 16:14