Criswell, K.E.; Head, J.J.
Morphological and morphometric data on the axial skeletons of vertebrates from museum specimens
Cite this dataset as:
Criswell, K.E.; Head, J.J. (2024). Morphological and morphometric data on the axial skeletons of vertebrates from museum specimens. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/1c76e443-da02-4bc4-a041-0f79adc016be
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This dataset is available under the terms of the Open Government Licence
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wget --user=YOUR_USERNAME --password=YOUR_PASSWORD --auth-no-challenge https://catalogue.ceh.ac.uk/datastore/eidchub/1c76e443-da02-4bc4-a041-0f79adc016be
https://doi.org/10.5285/1c76e443-da02-4bc4-a041-0f79adc016be
Computed tomography (CT) scans of 212 museum specimens, including mostly cartilaginous and bony fishes as well as several reptiles and amphibians, were obtained to quantitatively study vertebral column morphology and regionalisation. The specimens are housed in the University of Cambridge Museum of Zoology or the Natural History Museum in London (specimen identification numbers can be found in the supporting documentation).
These data consist of
1) series of tiff images that can be imported into CT segmenting software to reconstruct their shape in three dimensions;
2) STL files of each vertebra for a subset of the specimens scanned;
3) 3D landmark coordinates or measurements for each vertebra for a subset of taxa scanned;
4) tables of results from regionalisation analyses, and
5) photographs of eight fossil fish specimens
Supplemental files include details of the data collection procedures, specimen identification numbers and updated taxonomy, and CT scanning parameters for all scans.
These data consist of
1) series of tiff images that can be imported into CT segmenting software to reconstruct their shape in three dimensions;
2) STL files of each vertebra for a subset of the specimens scanned;
3) 3D landmark coordinates or measurements for each vertebra for a subset of taxa scanned;
4) tables of results from regionalisation analyses, and
5) photographs of eight fossil fish specimens
Supplemental files include details of the data collection procedures, specimen identification numbers and updated taxonomy, and CT scanning parameters for all scans.
Publication date: 2024-01-15
View numbers valid from 15 January 2024 Download numbers valid from 20 June 2024 (information prior to this was not collected)
Formats
Comma-separated values (CSV), Txt, stl, tiff
Temporal information
Temporal extent
2019-02-01 to 2023-06-30
Provenance & quality
Computed tomography scans of museum specimens were obtained at the Cambridge Biotomography Centre using a Nikon XTEK H 225 ST MicroCT scanner. Post-processing to optimise CT reconstructions and minimise scan artefacts was performed in Nikon’s CT-Pro program, and scan reslicing was performed using VG STUDIOMAX (Volume Graphics). Segmentation of CT scans resulting STL files was performed in either Mimics (Materialise) or VG STUDIOMAX (Volume Graphics). Landmark coordinates of vertebrae were plotted using Stratovan Checkpoint. Regionalisation analyses were conducted in the R software environment, with method details described in the supporting documentation for the data
Licensing and constraints
This dataset is available under the terms of the Open Government Licence
Cite this dataset as:
Criswell, K.E.; Head, J.J. (2024). Morphological and morphometric data on the axial skeletons of vertebrates from museum specimens. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/1c76e443-da02-4bc4-a041-0f79adc016be
Related
Supplemental information
Correspondence/contact details
Authors
Criswell, K.E.
University of Cambridge
Head, J.J.
University of Cambridge
Other contacts
Rights holder
University of Cambridge
Custodian
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk
Publisher
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk
Additional metadata
Keywords
Funding
Natural Environment Research Council Award: NE/S000739/1
Last updated
01 May 2024 07:24