Dhandapani, S. et al see all authors
Soil physico-chemistry, high-frequency soil nitrate, PLFA microbial communities, greenhouse gas emissions and litter quantity and quality under oak decline at Writtle Woodlands, Essex, UK, 2022-2023
https://doi.org/10.5285/26bbd3ed-adbd-464c-b31a-bbfb7052e9bf
Cite this dataset as:
Dhandapani, S.; Shaw, L.; McNeil, T.; Lu, B.; Booth, O.; Corbett, L.; Lunn, J.; Nightingale, A.; Niu, X.; Roose, T.; John, J.; Lin, H.; Adekanmbi, A.A.; Dudley, A.; Holt, L.; O'Brien, M.; Frost, H.; Xiao, F. (2026). Soil physico-chemistry, high-frequency soil nitrate, PLFA microbial communities, greenhouse gas emissions and litter quantity and quality under oak decline at Writtle Woodlands, Essex, UK, 2022-2023. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/26bbd3ed-adbd-464c-b31a-bbfb7052e9bf
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Creative Commons Attribution International licence
By accessing or using this dataset, you agree to the terms of the relevant licence agreement(s). You will ensure that this dataset is cited in any publication that describes research in which the data have been used.
This dataset captures one year of seasonal biogeochemical monitoring in the root zones of English oak (Quercus robur) trees affected by Acute Oak Decline (AOD), Chronic Oak Decline (COD), and healthy control trees in Writtle Woodlands, Essex, UK. Measurements include: (1) total soil nutrients at the start and end of the sampling period (2) Monthly bioavailable soil nutrients, moisture, pH, conductivity, temperature in surface soil (0-10 cm). (3) Seasonal bioavailable soil nutrients at multiple depths (0-40 cm), (4) seasonal litterfall mass and composition (leaves, seeds, wood, flowers), (5) litter chemistry (i.e., C, N, pH, and metals) (6) greenhouse gas (GHG) fluxes (CO2, CH4, N2O) from static chambers, and (7) microbial community structure derived from phospholipid fatty acid (PLFA) profiling. Data were collected between October 2022 and August 2023 at three replicated trees per health status category (AOD, COD, healthy). Measurements also include: (8) High frequency nitrate concentrations and soil moisture content obtained using in situ sensors (one sensor per tree per health status) and daily rainfall totals. The data enable assessment of temporal changes in soil chemistry, litter dynamics, microbial communities, and GHG fluxes in relation to tree health.
Publication date: 2026-04-30
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Format
Comma-separated values (CSV)
Spatial information
Study area
Spatial representation type
Tabular (text)
Spatial reference system
OSGB 1936 / British National Grid
Temporal information
Temporal extent
2022-10-01 to 2023-08-31
Provenance & quality
Soil and litter were sampled monthly or seasonally from fixed positions around nine trees (three per health class). Laboratory analyses included inorganic nitrogen by KCl extraction and Skalar SAN++ autoanalyser, available elements by Mehlich-3 extraction and ICP-OES (Perkin Elmer Avio 550 Max), total C and N by Flash 2000 Elemental Analyzer, and microbial community profiling by PLFA-GC-FID. Greenhouse gas fluxes (CO2, CH4, N2O) were measured using static chambers and gas chromatography.
High-frequency soil nitrate and moisture were monitored using a custom-built Droplet Microfluidic-Based In Situ Analyzer (University of Southampton) installed at 10 cm depth. The analyzer was laboratory-calibrated, maintained monthly, and field-recalibrated using nitrate standards.
Quality control included routine calibration and in-house reference materials.
High-frequency soil nitrate and moisture were monitored using a custom-built Droplet Microfluidic-Based In Situ Analyzer (University of Southampton) installed at 10 cm depth. The analyzer was laboratory-calibrated, maintained monthly, and field-recalibrated using nitrate standards.
Quality control included routine calibration and in-house reference materials.
Licensing and constraints
Creative Commons Attribution International licence
Cite this dataset as:
Dhandapani, S.; Shaw, L.; McNeil, T.; Lu, B.; Booth, O.; Corbett, L.; Lunn, J.; Nightingale, A.; Niu, X.; Roose, T.; John, J.; Lin, H.; Adekanmbi, A.A.; Dudley, A.; Holt, L.; O'Brien, M.; Frost, H.; Xiao, F. (2026). Soil physico-chemistry, high-frequency soil nitrate, PLFA microbial communities, greenhouse gas emissions and litter quantity and quality under oak decline at Writtle Woodlands, Essex, UK, 2022-2023. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/26bbd3ed-adbd-464c-b31a-bbfb7052e9bf
Related
Supplemental information
This dataset forms the basis of the results presented in the following pre-print or published paper
Bingyuan Lu, James Lunn, Ken Yeung, Selva Dhandapani, Liam Carter, Tiina Roose, Liz Shaw, AdrianNightingale, Xize Niu, Droplet Microfluidic-Based In Situ Analyzer for Monitoring Free Nitrate in Soil.Environmental Science & Technology 2024 58 (6), 2956-2965
Correspondence/contact details
Authors
Lu, B.
University of Glasgow
Booth, O.
University of Reading
Corbett, L.
University of Reading
Lunn, J.
University of Southampton
John, J.
University of Reading
Lin, H.
University of Reading
Dudley, A.
University of Reading
Holt, L.
University of Nottingham
Xiao, F.
University of Reading
Other contacts
Publisher
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk
Rights holder
University of Reading
Rights holder
University of Southampton
Additional metadata
Keywords
Funding
Natural Environment Research Council Award: NE/T010762/1
Natural Environment Research Council Award: NE/T010584/1
Natural Environment Research Council Award: NE/T010584/1
