Henrys, P.A.; Keith, A.M.; Robinson, D.A.; Emmett, B.A.

Model estimates of topsoil microbes [Countryside Survey]

Topsoil microbe data - Bacteria. Data is representative of 0 - 15 cm soil depth and includes bacterial community structure as assessed by ordination scores, Shannon diversity index and Simpson diversity index. Over 1000 samples from 233 1km x 1km squares across Great Britain were sampled in 2007 and analysed. See Emmett et al. 2010 for further details of sampling and Griffiths et al. 2011 for further details of methods. Estimates of mean values within selected habitats and parent material characteristics across GB were made using Countryside Survey (CS) data from 2007 using a mixed model approach. The estimated means of habitat/parent material combinations using 2007 data are modelled on dominant habitat and parent material characteristics derived from the Land Cover Map 2007 and Parent Material Model 2009, respectively. The parent material characteristic used was that which minimised AIC in each model (see dataset documentation). Please see Scott, 2008 for further details of similar statistical analysis. Areas, such as urban and littoral rock, are not sampled by CS and therefore have no associated data. Also, in some circumstances sample sizes for particular habitat/parent material combinations were insufficient to estimate mean values.

Emmett, B.A., Frogbrook, Z.L., Chamberlain P.M., Griffiths R., Pickup R., Poskitt, J., Reynolds B., Rowe E., Rowland P., Spurgeon D., Wilson J., Wood, C.M. (2008). Countryside Survey Technical Report No.03/07: Soils Manual. Centre for Ecology & Hydrology. http://nora.nerc.ac.uk/id/eprint/5201/1/CS_UK_2007_TR3%5B1%5D.pdf

Griffiths, R.I.; Thomson, B.C.; James, P.; Bell, T.; Bailey, M.; Whiteley, A.S. (2011). The bacterial biogeography of British soils. Environmental Microbiology, 13 (6). 1642-1654. https://doi.org/10.1111/j.1462-2920.2011.02480.x

Scott, W.A. (2008). CS Technical Report No.4/07: Statistical Report. Centre for Ecology & Hydrology. http://nora.nerc.ac.uk/id/eprint/5202/1/CS_UK_2007_TR4%5B1%5D.pdf

Publication date: 2014-06-26

Get the data

This dataset is made available under the terms of the Open Government Licence

Format of the data: ESRI Shapefile format

You must cite: Henrys, P.A.; Keith, A.M.; Robinson, D.A.; Emmett, B.A. (2014). Model estimates of topsoil microbes [Countryside Survey]. NERC Environmental Information Data Centre. https://doi.org/10.5285/53210c27-87fc-46e4-a3d6-e731003dc541


© UK Centre for Ecology & Hydrology. Contains British Geological Survey materials © NERC 2014. Contains Ordnance Survey data © Crown copyright and database right 2007.


Study area
Temporal extent
2007-01-01    to    2007-12-31

Provenance & quality

Data used are taken from the Countryside Survey Soils Report (Emmett et al. 2010) which can be found at http://nora.nerc.ac.uk/id/eprint/9354/1/CS_UK_2007_TR9.pdf


This dataset is included in the following collections

Model estimates of topsoil properties [Countryside Survey]

Supplemental information

Griffiths, Robert I.; Thomson, Bruce C.; James, Phillip; Bell, Thomas; Bailey, Mark; Whiteley, Andrew S.. 2011 The bacterial biogeography of British soils. Environmental Microbiology, 13 (6). 1642-1654.
Emmett, B.A., Reynolds, B., Chamberlain, P.M., Rowe, E., Spurgeon, D., Brittain, S.A., Frogbrook, Z., Hughes, S., Lawlor, A.J., Poskitt, J., Potter, E., Robinson, D.A., Scott, A., Wood, C., Woods, C. (2010). Countryside Survey: Soils Report from 2007. Technical Report No. 9/07. NERC/Centre for Ecology & Hydrology 192pp. (CEH Project Number: C03259).

Correspondence/contact details

Keith, A.M.
UK Centre for Ecology & Hydrology


Henrys, P.A.
Centre for Ecology & Hydrology
Keith, A.M.
Centre for Ecology & Hydrology
Robinson, D.A.
Centre for Ecology & Hydrology
Emmett, B.A.
Centre for Ecology & Hydrology

Other contacts

NERC EDS Environmental Information Data Centre
NERC Environmental Information Data Centre

Additional metadata

Topic categories
Broad Habitat,  Countryside Survey,  Non-metric Multidimensional Scaling ordination (NMDS),  Parent Material Model,  Shannon diversity index,  Simpson diversity index,  Soil
Spatial representation type
Spatial reference system
OSGB 1936 / British National Grid
Last updated
20 May 2022 10:42