Part of UKCEH UKCEH logo
UKCEH website
Gardner, E. et al

Bird4pop model for the simulation of foraging, dispersal and population processes of UK passerine birds

Download/Access
PLEASE NOTE: By accessing or using this model code, you agree to the terms of the relevant licence agreement(s). You will ensure that this model code is cited in any publication that describes research in which the data have been used.

Publication of this model code by the EIDC does not signify any endorsement or approval. By accessing and using the resource, you acknowledge that it is entirely at your own risk and you are solely responsible for any loss or liability that may arise

This model code is available under the terms of the Open Government Licence

Download the data
https://doi.org/10.5285/985691ce-e66b-416a-bb85-fc9ad0eca6ed
Bird4pop is a process-based model, written in R, that simulates the foraging, dispersal and population processes of nidicolous passerines. It accounts for both amount and configuration of habitat resources to predict spatially-explicit relative abundance and foraging rates, for a given input landscape. The input landcover information must be in raster format. The model can ingest a base landcover raster as well as edgecover rasters, which represent the locations of small habitat features that occupy only a fraction of a pixel. Model outputs are raster stacks with the same spatial extent and resolution as the input landcover raster.

The bird4pop model was co-developed by the UK Centre for Ecology & Hydrology and the British Trust for Ornithology. It has been parameterised for seven UK birds/bird groups (woodland specialists, woodland generalists, edge-nesting farmland birds, skylark (Alauda arvensis) – an open-nesting farmland bird, nuthatch (Sitta europaea) – a woodland specialist, robin (Erithacus rubecula) – a woodland generalist, yellowhammer (Emberiza citrinella) – an edge-nesting farmland bird). These parameter files (bird_guild_params.csv and bird_habitat_params.csv) are included. The model’s predictions have been validated against observations of these birds/bird groups collected across Great Britain through the BTO/RSPB/JNCC Breeding Bird Survey.

Data in bird_guild_params.csv includes movement ranges (breeding season foraging range, juvenile dispersal range in meters), population growth parameters (nest density per ha, mean number of chicks produced per year, growth parameters in arbitrary units) and survival parameters (yearly adult survival probability, yearly juvenile survival probability) for seven birds/bird groups (woodland specialists, woodland generalists, edge-nesting farmland birds, skylark – an open-nesting farmland bird, nuthatch – a woodland specialist, robin – a woodland generalist, yellowhammer – an edge-nesting farmland bird), used in bird4pop model.

Data in bird_habitat_params consists of scores representing the relative availability of suitable nest sites (on a scale from 0-1, where 0 = none and 1 = very high) and the relative availability of foraging resources during the breeding season (on a scale from 0-5, where 0 = none and 5 = very high) for four bird groups (woodland specialists, woodland generalists, edge-nesting farmland birds, skylark – an open-nesting farmland bird) and the 78 landcover classes, used in bird4pop model. Given scores are the mean values across n contributing experts. The data also include the number of contributing experts, the standard error on the mean score, and the alpha and beta values that describe a beta distribution consistent with the measured mean and variance for each score.

Users are recommended to get in touch with the model developers to ensure they have the most up-to-date version of the code and to receive support on model use and interpretation.
Publication date: 2024-09-30
25 downloads *
477 views *

More information

View numbers valid from 30 September 2024 Download numbers valid from 30 September 2024 (information prior to this was not collected)

Formats

Comma-separated values (CSV), R scripts (R)

Spatial information

Study area
Spatial representation types
Tabular (text)
Raster

Provenance & quality

Bird4pop model code was developed from the poll4pop model (https://doi.org/10.1111/2041-210X.13483 https://doi.org/10.5281/zenodo.4001015 ). It contains functions that are identical to those used in the poll4pop model, functions that are adapted from functions used in the poll4pop model, and new functions.

Data in bird_guild_params.csv is derived from literature data, with subsequent processing to convert units and calculate guild-level values. The growth parameters are set by selecting the values that best reproduced observed responses of woodland specialist birds to habitat fragmentation.

Data in bird_habitat_params is derived from an expert opinion questionnaire completed by four researchers. The mean scores and their standard error are weighted according to the self-reported certainty scores that experts gave alongside their habitat resource scores.

Licensing and constraints

This model code is available under the terms of the Open Government Licence

Cite this model code as:
Gardner, E.; Robinson, R.A.; Broughton, R.K.; Hinsley, S.A.; Redhead, J.W.; Woodward, I.; Pywell, R.F.; Bullock, J.M. (2024). Bird4pop model for the simulation of foraging, dispersal and population processes of UK passerine birds. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/985691ce-e66b-416a-bb85-fc9ad0eca6ed

Correspondence/contact details

Gardner, E.
UK Centre for Ecology & Hydrology
Maclean Building, Benson Lane, Crowmarsh Gifford
Wallingford
Oxfordshire
OX10 8BB
UNITED KINGDOM
 enquiries@ceh.ac.uk

Authors

Gardner, E.
UK Centre for Ecology & Hydrology
Robinson, R.A.
British Trust for Ornithology
Broughton, R.K.
UK Centre for Ecology & Hydrology
Hinsley, S.A.
UK Centre for Ecology & Hydrology
Redhead, J.W.
UK Centre for Ecology & Hydrology
Woodward, I.
British Trust for Ornithology
Pywell, R.F.
UK Centre for Ecology & Hydrology
Bullock, J.M.
UK Centre for Ecology & Hydrology

Other contacts

Rights holder
UK Centre for Ecology & Hydrology
Custodian
NERC EDS Environmental Information Data Centre
 info@eidc.ac.uk
Publisher
NERC EDS Environmental Information Data Centre
 info@eidc.ac.uk

Additional metadata

Topic categories
biota
INSPIRE theme
Species Distribution
Keywords
Animal behaviour , animal habitat , animal population , bird , bird , bird species , breeding bird , dispersal , Emberiza citrinella , Erithacus rubecula , Eurasian nuthatch , European robin , foraging behavior , land cover , model , Modelling , nesting , nuthatch , robin , Sitta europaea , skylark , United Kingdom , yellowhammer , yellowhammer
Funding
Natural Environment Research Council Award: NE/V007831/1
Last updated
18 October 2024 14:54