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Walsh, S.A. et al

Digital 3D models and measurements of avian brain cavity, blood vessel and nerve endocasts

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By accessing or using this dataset, you agree to the terms of the relevant licence agreement(s). You will ensure that this dataset is cited in any publication that describes research in which the data have been used.

© Natural Environment Research Council

When reusing these data please cite Walsh, S. A., Iwaniuk, A. N., Knoll M. A., Bourdon, E., Barrett, P. M., Milner, A. C., Nudds, R., Abel, R. L. and Dello Sterpaio, P. 2013. Avian cerebellar floccular fossa size is not a proxy for flying ability in birds. PLoS ONE, 8(6), e67176.

This dataset is made available under the terms of the Open Government Licence

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wget --user=YOUR_USERNAME --password=YOUR_PASSWORD --auth-no-challenge https://catalogue.ceh.ac.uk/datastore/eidchub/4e15f483-5b05-409e-acc0-5117fc24e90b

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https://doi.org/10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b
This dataset comprises cast reconstructions of brain cavity space in 60 extant avian species, derived from X-ray micro computed-tomography scan image stacks. Each reconstruction was made using Materialise Mimics 14.11 to create volumetric models (brain cavity casts) that were then transformed into the polygon mesh stereolithograph (STL) files archived here. Brain cavity cast models are in most cases accompanied by casts of main vascular features (e.g., carotid arteries) and the olfactory nerves (CN I). A data file (Data_TableComma Separated Values) based on values reported in Table 1 of Walsh et al. (2013: doi:10.1371/journal.pone.0067176) is included that records volume values used in the original analysis, and coding of cerebellar flocculus morphology.
Publication date: 2013-06-25
33 downloads *
783 views *

More information

View numbers valid from 01 June 2023 Download numbers valid from 20 June 2024 (information prior to this was not collected)

Formats

STL , Comma-separated values (CSV)

Temporal information

Temporal extent
2010-09-01    to    2012-03-01

Provenance & quality

Data were collected from avian osteological specimens held in the collections of National Museums Scotland, Edinburgh, and the Natural History Museum, London. These data were derived from X-ray micro-CT scans conducted using Nikon Metrology HMX ST 225 scanners at the University of Abertay, Dundee and the Natural History museum at resolutions of 12-149 µm. Voxel segmentation of brain cavity casts was conducted using Materialise Mimics 14.11 by two team members and volume values collected from these segmentations.

Licensing and constraints

This dataset is made available under the terms of the Open Government Licence

Cite this dataset as:
Walsh, S.A.; Iwaniuk, A.N.; Knoll, M.A.; Bourdon, E.; Barrett, P.M.; Milner, A.; Nudds, R.; Abel, R.L.; Dello Sterpaio, P. (2013). Digital 3D models and measurements of avian brain cavity, blood vessel and nerve endocasts. NERC Environmental Information Data Centre. https://doi.org/10.5285/4e15f483-5b05-409e-acc0-5117fc24e90b

© Natural Environment Research Council

When reusing these data please cite Walsh, S. A., Iwaniuk, A. N., Knoll M. A., Bourdon, E., Barrett, P. M., Milner, A. C., Nudds, R., Abel, R. L. and Dello Sterpaio, P. 2013. Avian cerebellar floccular fossa size is not a proxy for flying ability in birds. PLoS ONE, 8(6), e67176.

Citations

Walsh, S.A., Iwaniuk, A.N., Knoll, M.A., Bourdon, E., Barrett, P.M., Milner, A.C., ... Sterpaio, P.D. (2013). Avian Cerebellar Floccular Fossa Size Is Not a Proxy for Flying Ability in Birds. PLoS ONE, 8(6), e67176. https://doi.org/10.1371/journal.pone.0067176

Correspondence/contact details

Walsh, S.
National Museums Scotland
 s.walsh@nms.ac.uk

Authors

Walsh, S.A.
National Museums Scotland
Iwaniuk, A.N.
University of Lethbridge
Knoll, M.A.
University of the West of Scotland
Bourdon, E.
The Natural History Museum
Barrett, P.M.
The Natural History Museum
Milner, A.
The Natural History Museum
Nudds, R.
University of Manchester
Abel, R.L.
Imperial College London
Dello Sterpaio, P.
University of Abertay

Other contacts

Custodian
NERC EDS Environmental Information Data Centre
 info@eidc.ac.uk
Publisher
NERC Environmental Information Data Centre
 info@eidc.ac.uk

Additional metadata

Topic categories
biota
Keywords
Animal phylogenetics , biological locomotion , bird , bird flight , dinosaurs , Evolutionary ecology , paleobiology , vision
Last updated
21 March 2025 13:20