Farm management and longitudinal data on antibiotic use and antibiotic resistant E. coli for 53 dairy farms, South West England, 2017-2019
https://doi.org/10.5285/c9bc537a-d1c5-43a0-b146-42c25d4e8160
Cite this dataset as:
Reyher, K.; Avison, M.; Schubert, H.; Cogan, T.; Gould, V.C. (2021). Farm management and longitudinal data on antibiotic use and antibiotic resistant E. coli for 53 dairy farms, South West England, 2017-2019. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/c9bc537a-d1c5-43a0-b146-42c25d4e8160
Download/Access
PLEASE NOTE:
By accessing or using this dataset, you agree to the terms of the relevant licence agreement(s). You will ensure that this dataset is cited in any publication that describes research in which the data have been used.
This dataset is available under the terms of the Open Government Licence 
This dataset contains over 4000 faecally-contaminated environmental samples collected over 2 years across 53 dairy farms in England. The samples were analysed for E. coli resistance to amoxicillin, streptomycin, cefalexin, tetracycline and ciprofloxacin and detection of resistant strains is presented in the dataset as a binary result, along with mechanisms of resistance to third generation cephalosporins where relevant. In addition there is comprehensive farm management data including antibiotic usage data.
Publication date: 2021-09-16
View numbers valid from 01 June 2023 Download numbers valid from 20 June 2024 (information prior to this was not collected)
Format
Comma-separated values (CSV)
Spatial information
Study area
Spatial representation type
Tabular (text)
Spatial reference system
OSGB 1936 / British National Grid
Temporal information
Temporal extent
2017-01-01 to 2018-12-31
Provenance & quality
1. Records of samples taken from 53 farms including date, type and descriptive location of sample. 2. Records of microbiological analyses of the samples to identify E. coli resistant to amoxicillin, cephalexin, tetracycline, ciprofloxacin and/or streptomycin). 3. For samples where E. coli resistant to cephalexin were detected, results of laboratory testing for resistance mechanism. 4. Questionnaires administered to farmers between Jan 2017 and Jan 2019. These collected demographic and farm management data at the start and end of the data collection periods for each farm, as well as questionnaires around choices of antibiotic administered during the data collection period at the convenience of the participants. 5. Prescription medication records acquired from veterinary practices and farm records. All calculations and data entry were checked for errors before data was accepted.
Licensing and constraints
This dataset is available under the terms of the Open Government Licence
Cite this dataset as:
Reyher, K.; Avison, M.; Schubert, H.; Cogan, T.; Gould, V.C. (2021). Farm management and longitudinal data on antibiotic use and antibiotic resistant E. coli for 53 dairy farms, South West England, 2017-2019. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/c9bc537a-d1c5-43a0-b146-42c25d4e8160
Related
Correspondence/contact details
Authors
https://orcid.org/0000-0003-4912-5026
Schubert, H.
University of Bristol
Cogan, T.
University of Bristol
Gould, V.C.
University of Bristol
Other contacts
Rights holder
University of Bristol
Custodian
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk
Publisher
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk