MacDonald, H.C.; Bruford, M.W.; Ormerod, S.; Jones, T.H.
        
        Genotype data for three freshwater macroinvertebrate species in upland Wales, UK (2012-2013)
         https://doi.org/10.5285/27da4400-9835-4241-9df9-a3b598f8d274
        
       
            Cite this dataset as: 
            
           
          MacDonald, H.C.; Bruford, M.W.; Ormerod, S.; Jones, T.H. (2017). Genotype data for three freshwater macroinvertebrate species in upland Wales, UK (2012-2013). NERC Environmental Information Data Centre. https://doi.org/10.5285/27da4400-9835-4241-9df9-a3b598f8d274
             
             
            
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© Cardiff University
 This dataset is made available under the terms of the Open Government Licence  
 
          The resource consists of genotype data (genetic constitution of an individual organism) for three freshwater macroinvertebrate species, Amphinemura sulcicollis, Isoperla grammatica and Baetis rhodani collected at sites in upland Wales during May 2012 and May 2013. New nucleotide tandem repeats in DNA sequences i.e. Novel microsatellites were developed for this project so that genetic analysis could be carried out within the three species. Extra data on how microsatellite scores were grouped i.e. binned into unique alleles is provided, to aid replication. The data was generated for Hannah Macdonald's PhD thesis: to study genetic structure and diversity, demographic species history and resilience in freshwater ecosystems. 
 
The work was carried out under Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) project (Grant reference NERC NE/J014818/1). DURESS was funded by the Natural Environment Research Council (NERC) under the Biodiversity and Ecosystem Service Sustainability (BESS) programme.
         The work was carried out under Diversity in Upland Rivers for Ecosystem Service Sustainability (DURESS) project (Grant reference NERC NE/J014818/1). DURESS was funded by the Natural Environment Research Council (NERC) under the Biodiversity and Ecosystem Service Sustainability (BESS) programme.
           Publication date: 2017-09-20
          
         View numbers valid from 01 June 2023 Download numbers valid from 20 June 2024 (information prior to this was not collected)
           
          Format
Comma-separated values (CSV)
Spatial information
          Study area
         
         
          Spatial representation type
         
         
          Tabular (text)
         
        
          Spatial reference system
         
         
          OSGB 1936 / British National Grid
         
        Temporal information
          Temporal extent
         
         2012-06-15    to    2013-06-15
          
         Provenance & quality
         Samples of each invertebrate were collected by kicksampling in May in 2012 and 2013, samples were sorted and identified to genus level on site and stored in absolute ethanol. In the laboratory each larva was identified to species level using Elliott et al. (1988) and Hynes (1977). DNA was then extracted from tissue samples (see supporting information for extraction methods). Baetis rhodani samples contained cryptic species which had to be removed before genotyping, no cryptic species were identified for Amphinemura sulcicollis or Isoperla grammatica. Samples were sent for fragment analysis (Dundee Biosciences, UK) using ROX500 as the internal size standard. Fragment analysis products were visualised and scored using Genemarker v 1.91 (Holland and Parson 2011). These results were downloaded from Genemarker and allele sizes were binned by hand using the 'Binning' information (provided in the metadata) in an Excel spreadsheet. The data were then complied into master Excel spreadsheets for each invertebrate. The data were then exported as comma separated value files for ingestion into the EIDC.
        
       Licensing and constraints
 This dataset is made available under the terms of the Open Government Licence  
 
         Cite this dataset as: 
         
        MacDonald, H.C.; Bruford, M.W.; Ormerod, S.; Jones, T.H. (2017). Genotype data for three freshwater macroinvertebrate species in upland Wales, UK (2012-2013). NERC Environmental Information Data Centre. https://doi.org/10.5285/27da4400-9835-4241-9df9-a3b598f8d274
          
          
         
        © Cardiff University
Related
This dataset is included in the following collections
The DURESS project - Diversity of Upland Rivers for Ecosystem Service Sustainability
Correspondence/contact details
          MacDonald, H.
         
         
          Cardiff University
         
         
          Sir Martin Evans Building, Museum Avenue
Cardiff
CF10 3AX
UNITED KINGDOM
         
  Hannah.c.burton@gmail.com
        Cardiff
CF10 3AX
UNITED KINGDOM
Authors
          MacDonald, H.C.
         
         
          Cardiff University
         
        
          Bruford, M.W.
         
         
          Cardiff University
         
        
          Jones, T.H.
         
         
          Cardiff University
         
        Other contacts
          Rights holder
         
         
           Cardiff University
          
         
          Custodian
         
         
            NERC EDS Environmental Information Data Centre
           
  info@eidc.ac.uk
          
          Publisher
         
         
            NERC Environmental Information Data Centre
           
  info@eidc.ac.uk
           
      
 https://orcid.org/0000-0002-8174-302X
 https://orcid.org/0000-0002-8174-302X