Kramer, A.M. et al
Component model iterations for inputs into a multi-scale model describing the effect of host conditions on Hendra virus shedding, eastern Australia, 2008-2019
Cite this dataset as:
Kramer, A.M.; Faust, C.L.; Castellanos, A.A.; Fischhoff, I.R.; Peel, A.J.; Eby, P.; Ruiz-Aravena, M.; Borremans, B.; Plowright, R.K.; Han, B.A. (2025). Component model iterations for inputs into a multi-scale model describing the effect of host conditions on Hendra virus shedding, eastern Australia, 2008-2019. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/93bb37c6-ef86-4386-945d-c1a3d1e2683c
Download/Access
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This dataset is available under the terms of the Open Government Licence
Bulk download options
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wget --user=YOUR_USERNAME --password=YOUR_PASSWORD --auth-no-challenge https://catalogue.ceh.ac.uk/datastore/eidchub/93bb37c6-ef86-4386-945d-c1a3d1e2683c
https://doi.org/10.5285/93bb37c6-ef86-4386-945d-c1a3d1e2683c
The data provided here are model iteration objects and rasters needed to run the multi-scale modelling process and predict how the host condition affects probability of Hendra virus shedding.
The dataset contains predictions of three proxies for host conditions (including food shortage, rehabilitation admissions and formation of a new roost) across eastern Australia in 2008-2019. The Roost Species Distribution Model (SDM) has predictions of roost suitability. These are monthly, spatially explicit predictions of particular conditions or probability of roost occupations. The model objects are iterations of models that were initially trained on data held in figshare (https://figshare.com/s/ddb5a1584609b20f6596).
These data objects are linked with code provided at https://github.com/hanlab-ecol/BatOneHealth to be able to run the models and analyses. This includes comparisons of virus predictions of seven different multiscale model structures to observed Hendra virus shedding in field surveys. The purpose of this study was to determine if quantifying and incorporating host condition into epidemiological models improves predictions of virus shedding in space and time. The data objects relate to the 1,000 iterations run of this process to better able to account for uncertainty.
The dataset contains predictions of three proxies for host conditions (including food shortage, rehabilitation admissions and formation of a new roost) across eastern Australia in 2008-2019. The Roost Species Distribution Model (SDM) has predictions of roost suitability. These are monthly, spatially explicit predictions of particular conditions or probability of roost occupations. The model objects are iterations of models that were initially trained on data held in figshare (https://figshare.com/s/ddb5a1584609b20f6596).
These data objects are linked with code provided at https://github.com/hanlab-ecol/BatOneHealth to be able to run the models and analyses. This includes comparisons of virus predictions of seven different multiscale model structures to observed Hendra virus shedding in field surveys. The purpose of this study was to determine if quantifying and incorporating host condition into epidemiological models improves predictions of virus shedding in space and time. The data objects relate to the 1,000 iterations run of this process to better able to account for uncertainty.
Publication date: 2025-03-03
View numbers valid from 03 March 2025 Download numbers valid from 03 March 2025 (information prior to this was not collected)
Formats
TIFF, rdata
Spatial information
Study area
Spatial representation type
Raster
Spatial reference system
GDA2020/SA Lambert
Temporal information
Temporal extent
2008-01-01 to 2019-12-31
Temporal resolution
monthly
Provenance & quality
Each of the data objects (1,000 per component model) is related to training a component model using data sampled with replacement. These data objects are trained on field observations of host conditions (food shortage, rehabilitation admissions or formation of new roost) or locations and occupation of roost by black flying foxes (key Hendra virus host). Model parameters, predictor variables, and training are all described in the supplementary information. Each iteration only differs slightly in the training and testing data due to this resampling with replacement, allowing for slight variation in prediction among the runs.
Licensing and constraints
This dataset is available under the terms of the Open Government Licence
Cite this dataset as:
Kramer, A.M.; Faust, C.L.; Castellanos, A.A.; Fischhoff, I.R.; Peel, A.J.; Eby, P.; Ruiz-Aravena, M.; Borremans, B.; Plowright, R.K.; Han, B.A. (2025). Component model iterations for inputs into a multi-scale model describing the effect of host conditions on Hendra virus shedding, eastern Australia, 2008-2019. NERC EDS Environmental Information Data Centre. https://doi.org/10.5285/93bb37c6-ef86-4386-945d-c1a3d1e2683c
Supplemental information
The environmental features that are used as input data to generate the component models are stored on figshare.
Methods are detailed in the preprint.
The code to generate the component models and run multi-scale models can be found on the github repository.
Correspondence/contact details
Authors
Other contacts
Rights holder
University of Glasgow
Custodian
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk
Publisher
NERC EDS Environmental Information Data Centre
info@eidc.ac.uk
Additional metadata
Funding
U.S. Defense Advanced Research Projects Agency Award: PREEMPT D18AC00031
U.S. National Science Foundation EEID program Award: DEB-1717282
Natural Environment Research Council Award: NE/V014730/1
U.S. National Science Foundation CNH Award: DEB-1716698
U.S. National Science Foundation Rules of Life Award: EF-2133763
U.S. National Science Foundation Rules of Life Award: EF-2231624
U.S. National Science Foundation EEID program Award: DEB-1717282
Natural Environment Research Council Award: NE/V014730/1
U.S. National Science Foundation CNH Award: DEB-1716698
U.S. National Science Foundation Rules of Life Award: EF-2133763
U.S. National Science Foundation Rules of Life Award: EF-2231624
Last updated
04 March 2025 14:47